Simplify repo structure (#306)

* Remove broken notebook * Remove coveralls references * update pypi links * make supported Python versions consistent * Move tox config to pyproject.toml * remove paper and benchmark directories * remove shell script * Add codecov badge * Remove paper from gitignore
brainglobe · Dec 21, 2023 · 5573d08 · 5573d08
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commit 5573d08
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diff --git a/.coveragerc b/.coveragerc
diff --git a/.gitignore b/.gitignore
@@ -28,7 +28,6 @@ brexport.html
 *.vtk
 *.nrrd
 *.tdms
-paper/created_videos
 *.mp4
 
 

diff --git a/MANIFEST.in b/MANIFEST.in
@@ -1,9 +1,7 @@
 global-include *.svg
 include brainrender/gui/icons*
 
-recursive-exclude paper *
 recursive-exclude tests *
 recursive-exclude examples *
 recursive-exclude imgs *
 recursive-exclude videos *
-recursive-exclude benchmark *
diff --git a/README.md b/README.md
@@ -7,8 +7,8 @@
 [![Python Version](https://img.shields.io/pypi/pyversions/brainrender.svg)](https://pypi.org/project/brainrender)
 [![PyPI](https://img.shields.io/pypi/v/brainrender.svg)](https://pypi.org/project/brainrender)
 [![tests](https://github.com/brainglobe/brainrender/workflows/tests/badge.svg)](https://github.com/brainglobe/brainrender/actions)
+[![codecov](https://codecov.io/gh/brainglobe/brainrender/graph/badge.svg)](https://codecov.io/gh/brainglobe/brainrender)
 [![License: GPL v3](https://img.shields.io/badge/License-GPLv3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0)
-[![Coverage Status](https://coveralls.io/repos/github/brainglobe/brainrender/badge.svg)](https://coveralls.io/github/brainglobe/brainrender)
 [![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/python/black)
 
 

diff --git a/benchmark/README.md b/benchmark/README.md
diff --git a/benchmark/__init__.py b/benchmark/__init__.py
diff --git a/benchmark/bm_animation.py b/benchmark/bm_animation.py
diff --git a/benchmark/bm_brain_regions.py b/benchmark/bm_brain_regions.py
diff --git a/benchmark/bm_cells.py b/benchmark/bm_cells.py
diff --git a/benchmark/bm_napari.py b/benchmark/bm_napari.py
diff --git a/benchmark/bm_napari_volume.py b/benchmark/bm_napari_volume.py
diff --git a/benchmark/bm_volume.py b/benchmark/bm_volume.py