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Commits on Aug 22, 2024

• use raw string for regex pattern string (#95)

  xfengnefx

  authored
  d191eff

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Commits on Apr 7, 2023

• add .gitattributes to ignore eps

  brentp

  committed
  7041676

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• bump version

  brentp

  committed
  7c8e1eb

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• escape % in help text for --do-not-penalize-chimeras to fix TypeError when using 'bwameth.py --help' (#87)

  boegel

  authored
  4330567

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Commits on Mar 14, 2023

• bump version

  brentp

  committed
  af57384

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Commits on Mar 9, 2023

• see #86

  brentp

  committed
  b7aaa9f

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Commits on Jun 3, 2022

• add more info when c2t files modified more recently than .fa

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  brentp

  committed
  192d1ac

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Commits on Apr 20, 2022

• bump version

  brentp

  committed
  5297a89

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• Only split "SN" from the rest of the contig name (#80)

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  jdidion

  authored
  dcf96fd

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Commits on Feb 8, 2022

• use /dev/stdin instead of -

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  brentp

  committed
  10e8a66

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Commits on Jan 13, 2022

• force version of toolshed

  brentp

  committed
  94e2b9b

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Commits on Dec 30, 2021

• bump version

  Show description for 805ffc5
  brentp

  committed
  805ffc5

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Commits on Sep 16, 2021

• Fixed bug in argument checking which meant that only indexing ran (#73)

  chris-cheshire

  authored
  65f9260

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Commits on Sep 8, 2021

• Support for BWA-MEM2 (#71)

  Show description for c8254e6
  PoisonAlien

  authored
  c8254e6

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Commits on Sep 2, 2021

• README: Fix typo in *accurate* (#70)

  paulmenzel

  authored
  3dd4377

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Commits on Jul 10, 2021

• adding argument for not penalizing chimeric reads (#69)

  nchernia

  authored
  c110fb8

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Commits on May 11, 2021

• bam chrom name fix (#68)

  Show description for e591962
  tsy19900929

  authored
  e591962

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Commits on Feb 19, 2021

• remove dead script

  brentp

  committed
  cffb7e8

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Commits on Aug 7, 2018

• bump version

  brentp

  committed
  eb91baf

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Commits on May 16, 2018

• Merge branch 'master' of github.com:brentp/bwa-meth

  brentp

  committed
  d258870

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• bump version

  brentp

  committed
  98d15c1

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Commits on May 1, 2018

• Handle reads on stdin (#49)

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  bwlang

  authored and

  brentp

  committed
  a188df6

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Commits on Mar 14, 2018

• Merge pull request #52 from grahamgower/master

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  brentp

  authored
  a6a2ea6

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Commits on Mar 13, 2018

• c2t: don't exhaust memory when input files aren't interleaved.

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  grahamgower

  committed
  699631c

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Commits on Dec 8, 2017

• Merge pull request #47 from bwlang/interleaved_fastq

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  brentp

  authored
  10621a4

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Commits on Dec 7, 2017

• Typo fix

  bwlang

  committed
  61ae3a5

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• slightly better clarity

  bwlang

  committed
  ecfcf3c

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• Doc fix - no bam any more I think.

  bwlang

  committed
  7f3df2c

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• fixes RG for single reads

  bwlang

  committed
  e70286e

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• remove debugging output

  bwlang

  committed
  550555e

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• properly handles both paired and interleaved files - producing same number of mapped reads

  bwlang

  committed
  c53381a

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• Initial stab at interleaved support - untested

  bwlang

  committed
  f2d25cf

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Commits on Nov 3, 2017

• Merge pull request #45 from nsoranzo/master

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  brentp

  authored
  d07a0cc

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• Fix default read group to respect SAM spec

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  nsoranzo

  committed
  3ce128f

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Commits on Oct 9, 2017

• update install

  brentp

  committed
  c839fab

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