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The notebook uses an old version of the esm package (fair-esm==0.4.0) that supports parsing non-amino acid characters. If you want to fix the error (and reproduce the paper results), you can just revert to that version of esm. Ideally, I should also make the package robust to these kinds of inputs.
There was a strange KeyError "J" showing up when I ran the notebook, please see the fig attached. Thanks!
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