Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Error with colab notebook for nucleoprotein #17

Open
Jiacheng06 opened this issue Sep 20, 2023 · 2 comments
Open

Error with colab notebook for nucleoprotein #17

Jiacheng06 opened this issue Sep 20, 2023 · 2 comments

Comments

@Jiacheng06
Copy link

There was a strange KeyError "J" showing up when I ran the notebook, please see the fig attached. Thanks!
error

@brianhie
Copy link
Owner

The notebook uses an old version of the esm package (fair-esm==0.4.0) that supports parsing non-amino acid characters. If you want to fix the error (and reproduce the paper results), you can just revert to that version of esm. Ideally, I should also make the package robust to these kinds of inputs.

@Jiacheng06
Copy link
Author

Thanks a lot! I see.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants