diff --git a/README.md b/README.md index e9629d1..79da5fe 100644 --- a/README.md +++ b/README.md @@ -100,3 +100,13 @@ Sometimes `PseudoBulk` profiles are also useful to generate, whether it's the me The saved model files and also be re-used to predict a new query object in future by `LogisticPrediction`. +## Functions in pandasPlus: +`DF2Ann` converts a dataframe into an anndata object. + +`UpSetFromLists` plots an upset plot (barplot of Venn diagram intersections) based on lists of lists. + +`show_graph_with_labels` plots an interaction graph using edges to represent connection strength (max at 1, at least 0.9 to be shown). + +Dataframe values can also be used to calculate `zscore` and `Ginni` coefficients. + +`cellphonedb_n_interaction_Mat` and `cellphonedb_mat_per_interaction` are useful to reformat cellphonedb outputs.