os.replace() instead of os.rename() to save checkpoint (#260)

Fixes Windows bug #250
broadinstitute · Aug 28, 2023 · 0da3ed5 · 0da3ed5
1 parent af80d5a
commit 0da3ed5
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/cellbender/remove_background/checkpoint.py b/cellbender/remove_background/checkpoint.py
@@ -297,7 +297,7 @@ def make_tarball(files: List[str], tarball_name: str) -> bool:
         for file in files:
             # without arcname, unpacking results in unpredictable file locations!
             tar.add(file, arcname=os.path.basename(file))
-    os.rename(tarball_name + '.tmp', tarball_name)
+    os.replace(tarball_name + '.tmp', tarball_name)
     return True