From c966e1d614d288431857f75839c565a573f68d35 Mon Sep 17 00:00:00 2001 From: bkotzen Date: Wed, 20 Sep 2023 19:56:19 +0000 Subject: [PATCH 1/2] inference results for 2023-09-20 --- paper/09.20.23/allele_summary.csv | 3552 +++++++++++++++++++++++ paper/09.20.23/growth_rates_summary.csv | 3315 +++++++++++++++++++++ paper/09.20.23/metadata.txt | 6 + paper/09.20.23/pip_ranked_alleles.png | Bin 0 -> 93299 bytes paper/09.20.23/top_growth_rates.png | Bin 0 -> 53326 bytes 5 files changed, 6873 insertions(+) create mode 100644 paper/09.20.23/allele_summary.csv create mode 100644 paper/09.20.23/growth_rates_summary.csv create mode 100644 paper/09.20.23/metadata.txt create mode 100644 paper/09.20.23/pip_ranked_alleles.png create mode 100644 paper/09.20.23/top_growth_rates.png diff --git a/paper/09.20.23/allele_summary.csv b/paper/09.20.23/allele_summary.csv new file mode 100644 index 0000000..298e3b0 --- /dev/null +++ b/paper/09.20.23/allele_summary.csv @@ -0,0 +1,3552 @@ 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zn$M};zioR^mavH(FLq~c8{Z+O-+n`Ch+u>-8w4kY6>Jk%N!Ow3+a;3Oz_0Z6t5?J9 zt2XCJvP52HGXYBn1YPn9^}DG#Waw^T2CZ1zz){kRxW&UetuZt(uqA$pX9Kx=iE#pG zK>T7}aLZib{0ek^3pH*+j|Y4aXdD)mwO()IgKOf45g1k&x-_0wI#V%99v2A;A+B7_%2ifGJ6rg9l9D<&_{o#* zwJ}gt$<(Z`8Qn-aCLEc5EhpzR%Xwk_KVqkcOSy?(c?SWnk-~ok!v7?K(sl7NI}lP& zs{W8MGv5U*$+?93nzW}|IXRm_Isrn@thm#JGo&k$V+k=9r|q_d=4*Uz?n_yjQuPT! zAgN*^WANhVQlr?pKr?^iE*GV;n9;ay4CZE*>uGV!HlY+zB-*$smKb6GLqbDuy)Srk zt4*=e|?l9FAzd-v=uB_^P$iXvf5oDec4T?x|nY!FmoM<23X^06tgq!7li zc>U|_dGk1cbQpm8TMuI+qo#;UB%ufvPx1#a7H!ad7~nNP1v|534&lEM%(Oq?*X_2~ zY@cLhsS556ei`09VUmX_NR z`>M1ec?b5SKL@0|TCpPn#~F-klCY*oh~dv|VLs zOe|>E$&oZ^ovHxaf{dP?3_fUvL=4P-F!EVV4UGZh5VPxieBL0MleukOcY_5eqx$z> zmH0ho*FY@z%!mpg)M2E2LCcmSDdEC6-y`DBVG->JKjWMIBq_-Yv(usQa8IOkBES?` zOq80cDrIOx=XVU+;T21eG(s2gGf}YG^#1W+)uB*iK!_%imZbpTfSOSA0#k}Vc7>t;clY1 z%*`HLg!^NWZ2!`mOp-h|sq_AY+ao5o|Ry=a7zT6`miTR?@xz literal 0 HcmV?d00001 From 435a7cc89bda51985edca7165d708cf783856a75 Mon Sep 17 00:00:00 2001 From: bkotzen Date: Wed, 20 Sep 2023 20:00:18 +0000 Subject: [PATCH 2/2] update readme --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 3bf0fd5..ea92919 100644 --- a/README.md +++ b/README.md @@ -9,7 +9,7 @@ Welcome to the GitHub repository for [*Inferring selection effects in SARS-CoV-2 with Bayesian Viral Allele Selection*](https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1010540). The results from our main analysis are available in [paper](paper/). More recent inference results are also available: [08.10.22](paper/08.10.22/), - [09.22.22](paper/09.22.22/), [05.18.23](paper/05.18.23/), [06.15.23](paper/06.15.23/), [06.30.23](paper/06.30.23/), and [09.13.23](paper/09.13.23). + [09.22.22](paper/09.22.22/), [05.18.23](paper/05.18.23/), [06.15.23](paper/06.15.23/), [06.30.23](paper/06.30.23/), [09.13.23](paper/09.13.23), and [09.20.23](paper/09.20.23). Thanks to Benjamin Kotzen ([@bkotzen](https://www.github.com/bkotzen)) for help generating these more recent results!