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Welcome to the dsde-deep-learning wiki!
First grab the Anaconda dotkit:
use Anaconda
Now create a virtual environment with conda (you can replace p2 with the name you want-- it is good to be pithy with your environment name as you will have to type it every time you want to enter it):
conda create --name p2 python
Enter your newly created environment (once you have your environment setup this is the only command you will need to get everything loaded):
source activate p2
Install all the packages you want! Press y at the prompts.
conda install keras
conda install --override-channels -c conda-forge bzip2
conda install -c bioconda pyvcf=0.6.8.dev0
conda install -c bioconda pysam
conda install -c anaconda biopython=1.68
conda install matplotlib
conda install scikit-learn
conda install -c conda-forge opencv