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What When using matplotlib 3.4 instead of 3.3 or older, the images displayed by ml4h.visualization_tools.hd5_mri_plots.plot_mri_tensor_as_animation display one after another instead of replacing the prior image. (The animation is no longer an animation.)
This appears to be due to https://matplotlib.org/stable/users/whats_new.html#changes-to-behavior-of-axes-creation-methods-gca-add-axes-add-subplot
How Update the usage of matplot lib to correctly replace the images.
Acceptance Criteria It appears as an animation again.
The text was updated successfully, but these errors were encountered:
Note that %matplotlib notebook instead of %matplotlib inline sorta fixes it on Jupyter, but not on JupyterLab.
%matplotlib notebook
%matplotlib inline
Sorry, something went wrong.
Testing on newer Docker images for both Terra (e.g., #469) and GCP Notebooks fixes the issue.
So this was not due to a behavior change in matplotlib 3.4, but due to some bug fixed in a more recent Python package version.
deflaux
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What
When using matplotlib 3.4 instead of 3.3 or older, the images displayed by ml4h.visualization_tools.hd5_mri_plots.plot_mri_tensor_as_animation display one after another instead of replacing the prior image. (The animation is no longer an animation.)
This appears to be due to https://matplotlib.org/stable/users/whats_new.html#changes-to-behavior-of-axes-creation-methods-gca-add-axes-add-subplot
How
Update the usage of matplot lib to correctly replace the images.
Acceptance Criteria
It appears as an animation again.
The text was updated successfully, but these errors were encountered: