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nf-training-advanced Public
Forked from seqeralabs/nf-training-advancedCustomer workshop materials
Nextflow UpdatedDec 14, 2022 -
covdist Public
simple coverage distribution profile of aligned samples. useful for sequencing center feedback and topoffs.
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dotfiles Public
Forked from mathiasbynens/dotfiles.files, including ~/.osx — sensible hacker defaults for OS X
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github-vscode-theme-iterm Public
Forked from cdalvaro/github-vscode-theme-iterm
GitHub VS Code Theme for iTerm
UpdatedMar 19, 2022 -
covviz Public
Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
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seqcover-nf Public
quality control sample coverage across genes
Nextflow MIT License UpdatedFeb 10, 2022 -
haplotyper-nf Public
haplotyper via sentieon after nf-core/sarek mapping
Nextflow MIT License UpdatedJan 6, 2022 -
sarek Public
Forked from nf-core/sarekAnalysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Nextflow MIT License UpdatedNov 3, 2021 -
idplot Public
compare sequences to a shared root reference sequence.
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arq5x.github.io Public
Forked from arq5x/arq5x.github.ioHTML Apache License 2.0 UpdatedOct 14, 2021 -
facets-nf Public
nextflow implementation of the facets data flow.
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sentieon-dnaseq-nf Public
Run DNAseq on Sarek result files
Nextflow MIT License UpdatedAug 24, 2021 -
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samplot Public
Forked from ryanlayer/samplotPlot structural variant signals from many BAMs and CRAMs
Python MIT License UpdatedJan 8, 2021 -
freebayes-nf Public
a better freebayes-parallel
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smoove-nf Public
Nextflow implementation of the smoove workflow and other tools for SV calling and QC
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ggd-recipes Public
Forked from gogetdata/ggd-recipesconda recipes for genomic data
Shell MIT License UpdatedSep 15, 2020 -
jigv Public
Forked from brentp/jigvigv.js server and automatic configuration to view bam/cram/vcf/bed
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slivar Public
Forked from brentp/slivarvariant expressions, annotation, and filtering for great good.
Nim MIT License UpdatedJan 9, 2020 -
somalier Public
Forked from brentp/somalierfast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs
Nim UpdatedDec 9, 2019 -
smoove Public
Forked from brentp/smoovestructural variant calling and genotyping with existing tools, but, smoothly.
Go Apache License 2.0 UpdatedOct 17, 2019 -
relatively Public
📊 Plotly abundance figure with absolute and relative abundances across a hierarchy
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bpbio Public
Forked from brentp/bpbioa single binary with many useful genomics subtools.
Nim MIT License UpdatedDec 10, 2018 -
prokka Public
Forked from tseemann/prokka⚡ ♒ Rapid prokaryotic genome annotation
Perl UpdatedOct 17, 2018 -
binder Public
mybinder.org - open testing.
