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environment.yaml
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name: multiaffinity
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- _r-mutex=1.0.1=anacondar_1
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- binutils_impl_linux-64=2.36.1=h193b22a_2
- binutils_linux-64=2.36=hf3e587d_0
- bioconductor-annotate=1.70.0=r41hdfd78af_0
- bioconductor-annotationdbi=1.54.0=r41hdfd78af_0
- bioconductor-biobase=2.52.0=r41hd029910_0
- bioconductor-biocfilecache=2.0.0=r41hdfd78af_0
- bioconductor-biocgenerics=0.38.0=r41hdfd78af_0
- bioconductor-biocparallel=1.26.0=r41h399db7b_0
- bioconductor-biostrings=2.60.0=r41hd029910_0
- bioconductor-delayedarray=0.18.0=r41hd029910_0
- bioconductor-deseq2=1.32.0=r41h399db7b_0
- bioconductor-genefilter=1.74.0=r41hba52eb8_0
- bioconductor-geneplotter=1.70.0=r41hdfd78af_0
- bioconductor-genomeinfodb=1.28.0=r41hdfd78af_0
- bioconductor-genomeinfodbdata=1.2.6=r41hdfd78af_0
- bioconductor-genomicranges=1.44.0=r41hd029910_0
- bioconductor-ihw=1.20.0=r41hdfd78af_0
- bioconductor-iranges=2.26.0=r41hd029910_0
- bioconductor-keggrest=1.32.0=r41hdfd78af_0
- bioconductor-lpsymphony=1.20.0=r41h399db7b_0
- bioconductor-matrixgenerics=1.4.0=r41hdfd78af_0
- bioconductor-s4vectors=0.30.0=r41hd029910_0
- bioconductor-singlecellexperiment=1.14.1=r41hdfd78af_0
- bioconductor-summarizedexperiment=1.22.0=r41hdfd78af_0
- bioconductor-waddr=1.6.1=r41h399db7b_0
- bioconductor-xvector=0.32.0=r41hd029910_0
- bioconductor-zlibbioc=1.38.0=r41hd029910_0
- bwidget=1.9.14=ha770c72_0
- bzip2=1.0.8=h7f98852_4
- c-ares=1.17.2=h7f98852_0
- ca-certificates=2021.10.26=h06a4308_2
- cairo=1.16.0=h6cf1ce9_1008
- certifi=2021.10.8=py39h06a4308_0
- curl=7.78.0=hea6ffbf_0
- debugpy=1.4.1=py39he80948d_0
- decorator=5.0.9=pyhd8ed1ab_0
- entrypoints=0.3=pyhd8ed1ab_1003
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.13.1=hba837de_1005
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.10.4=h0708190_1
- fribidi=1.0.10=h36c2ea0_0
- gcc_impl_linux-64=9.4.0=h03d3576_8
- gcc_linux-64=9.4.0=h391b98a_0
- gettext=0.19.8.1=h0b5b191_1005
- gfortran_impl_linux-64=9.4.0=h0003116_8
- gfortran_linux-64=9.4.0=hf0ab688_0
- graphite2=1.3.13=h58526e2_1001
- gsl=2.7=he838d99_0
- gxx_impl_linux-64=9.4.0=h03d3576_8
- gxx_linux-64=9.4.0=h0316aca_0
- harfbuzz=2.9.0=h83ec7ef_0
- icu=68.1=h58526e2_0
- ipykernel=6.3.1=py39hef51801_0
- ipython=7.27.0=py39hef51801_0
- ipython_genutils=0.2.0=py_1
- jbig=2.1=h7f98852_2003
- jedi=0.18.0=py39hf3d152e_2
- joblib=1.1.0=pyhd3eb1b0_0
- jpeg=9d=h36c2ea0_0
- jupyter_client=7.0.2=pyhd8ed1ab_0
- jupyter_core=4.7.1=py39hf3d152e_0
- kernel-headers_linux-64=2.6.32=he073ed8_14
- krb5=1.19.2=hcc1bbae_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- lerc=2.2.1=h9c3ff4c_0
- libblas=3.9.0=11_linux64_openblas
- libcblas=3.9.0=11_linux64_openblas
- libcurl=7.78.0=h2574ce0_0
- libdeflate=1.7=h7f98852_5
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.3=h58526e2_2
- libgcc-devel_linux-64=9.4.0=hd854feb_8
- libgcc-ng=11.1.0=hc902ee8_8
- libgfortran-ng=11.1.0=h69a702a_8
- libgfortran5=11.1.0=h6c583b3_8
- libglib=2.68.4=h3e27bee_0
- libgomp=11.1.0=hc902ee8_8
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=11_linux64_openblas
- libnghttp2=1.43.0=h812cca2_0
- libopenblas=0.3.17=pthreads_h8fe5266_1
- libpng=1.6.37=h21135ba_2
- libsanitizer=9.4.0=h79bfe98_8
- libsodium=1.0.18=h36c2ea0_1
- libssh2=1.10.0=ha56f1ee_0
- libstdcxx-devel_linux-64=9.4.0=hd854feb_8
- libstdcxx-ng=11.1.0=h56837e0_8
- libtiff=4.3.0=hf544144_1
- libuuid=2.32.1=h7f98852_1000
- libwebp-base=1.2.1=h7f98852_0
- libxcb=1.13=h7f98852_1003
- libxml2=2.9.12=h72842e0_0
- lz4-c=1.9.3=h9c3ff4c_1
- make=4.3=hd18ef5c_1
- matplotlib-inline=0.1.2=pyhd8ed1ab_2
- ncurses=6.2=h58526e2_4
- nest-asyncio=1.5.1=pyhd8ed1ab_0
- openssl=1.1.1l=h7f8727e_0
- pandoc=2.14.2=h7f98852_0
- pango=1.48.9=hb8ff022_0
- parso=0.8.2=pyhd8ed1ab_0
- pcre=8.45=h9c3ff4c_0
- pcre2=10.37=h032f7d1_0
- pexpect=4.8.0=pyh9f0ad1d_2
- pickleshare=0.7.5=py_1003
- pip=21.2.4=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- prompt-toolkit=3.0.20=pyha770c72_0
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pygments=2.10.0=pyhd8ed1ab_0
- python=3.9.7=h49503c6_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python_abi=3.9=2_cp39
- pyzmq=22.2.1=py39h37b5a0c_0
- r=4.1=r41hd8ed1ab_1004
- r-abind=1.4_5=r41hc72bb7e_1003
- r-acepack=1.4.1=r41h859d828_1006
- r-arm=1.11_2=r41hc72bb7e_0
- r-askpass=1.1=r41hcfec24a_2
- r-assertthat=0.2.1=r41hc72bb7e_2
- r-backports=1.2.1=r41hcfec24a_0
- r-base=4.1.1=hb93adac_1
- r-base64enc=0.1_3=r41hcfec24a_1004
- r-bh=1.75.0_0=r41hc72bb7e_0
- r-bit=4.0.4=r41hcfec24a_0
- r-bit64=4.0.5=r41hcfec24a_0
- r-bitops=1.0_7=r41hcfec24a_0
- r-blob=1.2.2=r41hc72bb7e_0
- r-boot=1.3_28=r41hc72bb7e_0
- r-brio=1.1.2=r41hcfec24a_0
- r-broom=0.7.9=r41hc72bb7e_0
- r-cachem=1.0.6=r41hcfec24a_0
- r-callr=3.7.0=r41hc72bb7e_0
- r-cellranger=1.1.0=r41hc72bb7e_1003
- r-checkmate=2.0.0=r41hcfec24a_1
- r-class=7.3_19=r41hcfec24a_0
- r-cli=3.0.1=r41h03ef668_1
- r-clipr=0.7.1=r41hc72bb7e_0
- r-cluster=2.1.2=r41h859d828_0
- r-coda=0.19_4=r41hc72bb7e_0
- r-codetools=0.2_18=r41hc72bb7e_0
- r-colorspace=2.0_2=r41hcfec24a_0
- r-cpp11=0.3.1=r41hc72bb7e_0
- r-crayon=1.4.1=r41hc72bb7e_0
- r-curl=4.3.2=r41hcfec24a_0
- r-data.table=1.14.0=r41hcfec24a_0
- r-dbi=1.1.1=r41hc72bb7e_0
- r-dbplyr=2.1.1=r41hc72bb7e_0
- r-desc=1.3.0=r41hc72bb7e_0
- r-diffobj=0.3.4=r41hcfec24a_0
- r-digest=0.6.27=r41h03ef668_0
- r-dplyr=1.0.7=r41h03ef668_0
- r-dtplyr=1.1.0=r41hc72bb7e_0
- r-ellipsis=0.3.2=r41hcfec24a_0
- r-envstats=2.4.0=r41ha770c72_0
- r-eva=0.2.6=r41hc72bb7e_0
- r-evaluate=0.14=r41hc72bb7e_2
- r-fansi=0.4.2=r41hcfec24a_0
- r-farver=2.1.0=r41h03ef668_0
- r-fastmap=1.1.0=r41h03ef668_0
- r-fdrtool=1.2.16=r41hcfec24a_0
- r-filelock=1.0.2=r41hcfec24a_1002
- r-forcats=0.5.1=r41hc72bb7e_0
- r-foreign=0.8_81=r41hcfec24a_0
- r-formatr=1.11=r41hc72bb7e_0
- r-formula=1.2_4=r41hc72bb7e_0
- r-fs=1.5.0=r41h03ef668_0
- r-futile.logger=1.4.3=r41hc72bb7e_1003
- r-futile.options=1.0.1=r41hc72bb7e_1002
- r-gargle=1.2.0=r41hc72bb7e_0
- r-generics=0.1.0=r41hc72bb7e_0
- r-ggplot2=3.3.5=r41hc72bb7e_0
- r-glue=1.4.2=r41hcfec24a_0
- r-googledrive=2.0.0=r41hc72bb7e_0
- r-googlesheets4=0.3.0=r41hc72bb7e_0
- r-gridextra=2.3=r41hc72bb7e_1003
- r-gtable=0.3.0=r41hc72bb7e_3
- r-haven=2.4.3=r41h2713e49_0
- r-highr=0.9=r41hc72bb7e_0
- r-hmisc=4.5_0=r41h859d828_0
- r-hms=1.1.0=r41hc72bb7e_0
- r-htmltable=2.2.1=r41hc72bb7e_0
- r-htmltools=0.5.2=r41h03ef668_0
- r-htmlwidgets=1.5.4=r41hc72bb7e_0
- r-httr=1.4.2=r41hc72bb7e_0
- r-ids=1.0.1=r41hc72bb7e_1
- r-isoband=0.2.5=r41h03ef668_0
- r-jpeg=0.1_8.1=r41hcfec24a_1
- r-jsonlite=1.7.2=r41hcfec24a_0
- r-kernsmooth=2.23_20=r41h742201e_0
- r-knitr=1.34=r41hc72bb7e_0
- r-labeling=0.4.2=r41hc72bb7e_0
- r-lambda.r=1.2.4=r41hc72bb7e_1
- r-lattice=0.20_44=r41hcfec24a_0
- r-latticeextra=0.6_29=r41hc72bb7e_1
- r-lifecycle=1.0.0=r41hc72bb7e_0
- r-lme4=1.1_27.1=r41h03ef668_0
- r-locfit=1.5_9.4=r41hcfec24a_1
- r-lubridate=1.7.10=r41h03ef668_0
- r-magrittr=2.0.1=r41hcfec24a_1
- r-markdown=1.1=r41hcfec24a_1
- r-mass=7.3_54=r41hcfec24a_0
- r-matrix=1.3_4=r41he454529_0
- r-matrixstats=0.60.1=r41hcfec24a_0
- r-memoise=2.0.0=r41hc72bb7e_0
- r-mgcv=1.8_36=r41he454529_0
- r-mime=0.11=r41hcfec24a_0
- r-minqa=1.2.4=r41h5ee154c_1006
- r-modelr=0.1.8=r41hc72bb7e_0
- r-munsell=0.5.0=r41hc72bb7e_1003
- r-nlme=3.1_152=r41h859d828_0
- r-nloptr=1.2.2.2=r41h03ef668_0
- r-nnet=7.3_16=r41hcfec24a_0
- r-nortest=1.0_4=r41hc72bb7e_1003
- r-openssl=1.4.5=r41he36bf35_0
- r-pillar=1.6.2=r41hc72bb7e_0
- r-pkgconfig=2.0.3=r41hc72bb7e_1
- r-pkgload=1.2.1=r41h03ef668_0
- r-plogr=0.2.0=r41hc72bb7e_1003
- r-plyr=1.8.6=r41h03ef668_1
- r-png=0.1_7=r41hcfec24a_1004
- r-praise=1.0.0=r41hc72bb7e_1004
- r-prettyunits=1.1.1=r41hc72bb7e_1
- r-processx=3.5.2=r41hcfec24a_0
- r-progress=1.2.2=r41hc72bb7e_2
- r-ps=1.6.0=r41hcfec24a_0
- r-purrr=0.3.4=r41hcfec24a_1
- r-r6=2.5.1=r41hc72bb7e_0
- r-rappdirs=0.3.3=r41hcfec24a_0
- r-rcolorbrewer=1.1_2=r41h785f33e_1003
- r-rcpp=1.0.7=r41h03ef668_0
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- r-testthat=3.0.4=r41h03ef668_0
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- r-tinytex=0.33=r41hc72bb7e_0
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- r-utf8=1.2.2=r41hcfec24a_0
- r-uuid=0.1_4=r41hcfec24a_1
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- r-viridis=0.6.1=r41hc72bb7e_1
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- r-vroom=1.5.4=r41h03ef668_0
- r-waldo=0.3.0=r41hc72bb7e_0
- r-withr=2.4.2=r41hc72bb7e_0
- r-xfun=0.25=r41h03ef668_0
- r-xml=3.99_0.7=r41hcfec24a_0
- r-xml2=1.3.2=r41h03ef668_1
- r-xtable=1.8_4=r41hc72bb7e_3
- r-yaml=2.2.1=r41hcfec24a_1
- readline=8.1=h46c0cb4_0
- sed=4.8=he412f7d_0
- setuptools=52.0.0=py39h06a4308_0
- six=1.16.0=pyh6c4a22f_0
- sqlite=3.36.0=h9cd32fc_0
- sysroot_linux-64=2.12=he073ed8_14
- tk=8.6.11=h27826a3_1
- tktable=2.10=hb7b940f_3
- tornado=6.1=py39h3811e60_1
- traitlets=5.1.0=pyhd8ed1ab_0
- tzdata=2021a=he74cb21_1
- wcwidth=0.2.5=pyh9f0ad1d_2
- wheel=0.37.0=pyhd8ed1ab_1
- xorg-kbproto=1.0.7=h7f98852_1002
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- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.5=h516909a_1
- zeromq=4.3.4=h9c3ff4c_1
- zlib=1.2.11=h516909a_1010
- zstd=1.5.0=ha95c52a_0
- pip:
- argparse==1.4.0
- cycler==0.10.0
- kiwisolver==1.3.2
- matplotlib==3.3.3
- multixrank==0.0.8
- networkx==2.6.2
- numpy==1.19.5
- pandas==1.2.0
- pillow==8.3.2
- psutil==5.8.0
- pyparsing==2.4.7
- pytz==2021.1
- pyyaml==5.4.1
- scikit-learn==1.0.1
- scipy==1.6.0
- seaborn==0.11.1
prefix: /home/mar/miniconda3/envs/multiAffinity