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saxgamlhandler.h
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/*
Copyright (C) 2003-2004 Ronald C Beavis, all rights reserved
X! tandem
This software is a component of the X! proteomics software
development project
Use of this software governed by the Artistic license, as reproduced here:
The Artistic License for all X! software, binaries and documentation
Preamble
The intent of this document is to state the conditions under which a
Package may be copied, such that the Copyright Holder maintains some
semblance of artistic control over the development of the package,
while giving the users of the package the right to use and distribute
the Package in a more-or-less customary fashion, plus the right to
make reasonable modifications.
Definitions
"Package" refers to the collection of files distributed by the Copyright
Holder, and derivatives of that collection of files created through
textual modification.
"Standard Version" refers to such a Package if it has not been modified,
or has been modified in accordance with the wishes of the Copyright
Holder as specified below.
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for the package.
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"Reasonable copying fee" is whatever you can justify on the basis of
media cost, duplication charges, time of people involved, and so on.
(You will not be required to justify it to the Copyright Holder, but
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"Freely Available" means that no fee is charged for the item itself,
though there may be fees involved in handling the item. It also means
that recipients of the item may redistribute it under the same
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1. You may make and give away verbatim copies of the source form of the
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However, you may distribute this Package in aggregate with other
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do not represent such an executable image as a Standard Version of
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supplied by you and linked into this Package in order to emulate
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WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF
MERCHANTIBILITY AND FITNESS FOR A PARTICULAR PURPOSE.
The End
*/
// File version: 2005-06-01
/*
* saxgamlhandler.h contains the override methods necessary for compatibility with
* gaml mass spectrum file formats.
*/
#if !defined(SAXGAMLHANDLER_H)
#define SAXGAMLHANDLER_H
#include "saxhandler.h"
/**
* Uses eXpat SAX parser to parse GAML data.
*/
class SAXGamlHandler : public SAXSpectraHandler
{
public:
SAXGamlHandler( vector<mspectrum>& _pv, mspectrumcondition& _p, mscore& _m );
~SAXGamlHandler();
// -----------------------------------------------------------------------
// Overrides of SAXHandler functions
// -----------------------------------------------------------------------
/**
* Receive notification of the start of an element.
*
* <p>By default, do nothing. Application writers may override this
* method in a subclass to take specific actions at the start of
* each element (such as allocating a new tree node or writing
* output to a file).</p>
*/
void startElement(const XML_Char *el, const XML_Char **attr);
/**
* Receive notification of the end of an element.
*
* <p>By default, do nothing. Application writers may override this
* method in a subclass to take specific actions at the end of
* each element (such as finalising a tree node or writing
* output to a file).</p>
*/
void endElement(const XML_Char *el);
/**
* Receive notification of character data inside an element.
*
* <p>By default, do nothing. Application writers may override this
* method to take specific actions for each chunk of character data
* (such as adding the data to a node or buffer, or printing it to
* a file).</p>
*/
void characters(const XML_Char *s, int len);
private:
// Flags indicating parser is inside a particular tag.
bool m_bMZ;
bool m_bINT;
bool m_bInData;
bool m_bDesc;
};
#endif //SAXGAMLHANDLER_H