macos 13 (12 is deprecated) #360

Workflow file for this run

.github/workflows/python-package.yml at cb575ea


	name: CI

	on:
	push:
	pull_request:

	jobs:
	python:

	runs-on: ${{ matrix.os }}
	strategy:
	fail-fast: false
	matrix:
	python-version: ["3.7", "3.8", "3.9", "3.10", "3.11", "3.12"]
	os: [ubuntu-latest, macos-12, macos-14]
	exclude:
	- os: macos-14
	python-version: "3.7"

	steps:
	- uses: actions/checkout@v3
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}
	- name: Pre-install
	run: \|
	python -m pip install --upgrade pip
	pip install --no-deps .
	python -c "import bussilab"
	bussilab -h
	pip uninstall --yes bussilab
	- name: Install
	run: \|
	pip install .
	- name: Test with pytest
	env:
	BUSSILAB_TEST_NOTIFY_TOKEN: ${{ secrets.BUSSILAB_TEST_NOTIFY_TOKEN }}
	BUSSILAB_TEST_NOTIFY_CHANNEL: ${{ secrets.BUSSILAB_TEST_NOTIFY_CHANNEL }}
	run: \|
	bussilab check --import
	pip install pytest pytest-cov
	pytest -v
	NUMBA_DISABLE_JIT=1 PYTHONPATH=$PWD pytest -v --cov=bussilab
	bash <(curl -s https://codecov.io/bash)
	- name: Pyflakes
	run: \|
	pip install --upgrade pyflakes
	pyflakes bussilab
	- name: Pylint
	run: \|
	pip install --upgrade pylint
	pylint -E bussilab
	# - name: Mypy
	# run: \|
	# pip install --upgrade mypy
	# mypy bussilab
	- name: Flake8
	run: \|
	pip install --upgrade flake8
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 bussilab bin --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics \| tee flake8_report.txt
	- name: Doc
	if: ${{ matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12' }}
	run: \|
	pip install --upgrade pdoc3 jupyter nbconvert
	pdoc3 -f --html -o doc/ bussilab
	( cd examples && ./render.sh )
	mkdir doc/examples
	cp examples/*html doc/examples/
	( sudo apt-get install tree && cd doc/examples && tree -H '.' -L 1 --noreport --charset utf-8 > index.html )
	( sudo apt-get install pandoc texlive-xetex && pdoc3 -f --pdf bussilab > bussilab.md && pandoc --metadata=title:"Py-Bussilab Documentation" --from=markdown+abbreviations+tex_math_single_backslash --pdf-engine=xelatex --toc --toc-depth=4 --output=doc/bussilab.pdf bussilab.md )
	- name: Push doc to GitHub Pages
	if: ${{ matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12' && github.ref == 'refs/heads/master' }}
	env:
	BUSSILABBOT_TOKEN: ${{ secrets.BUSSILABBOT_TOKEN }}
	run: \|
	.ci/pushdoc
	- name: Upload doc to artifact
	if: ${{ matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12' }}
	uses: actions/upload-artifact@v3
	with:
	path: doc
	name: doc
	- name: Upload doc to artifact
	if: ${{ matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12' }}
	uses: actions/upload-artifact@v3
	with:
	path: flake8_report.txt
	name: flake8_report
	- name: Deploy PyPI
	if: ${{ matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12' && startsWith(github.ref, 'refs/tags/') }}
	env:
	BUSSILABBOT_PYPI: ${{ secrets.BUSSILABBOT_PYPI }}
	run: \|
	pip install twine
	python setup.py sdist
	python -m twine upload -u __token__ -p "$BUSSILABBOT_PYPI" dist/bussilab-*.tar.gz

	python36:
	# Mini test, to make sure we do not break python 3.6 compaibility for a while
	runs-on: ubuntu-20.04

	steps:
	- uses: actions/checkout@v3
	- name: Set up Python 3.6
	uses: actions/setup-python@v4
	with:
	python-version: 3.6

	- name: Install
	run: \|
	pip install .
	- name: Test with pytest
	env:
	BUSSILAB_TEST_NOTIFY_TOKEN: ${{ secrets.BUSSILAB_TEST_NOTIFY_TOKEN }}
	BUSSILAB_TEST_NOTIFY_CHANNEL: ${{ secrets.BUSSILAB_TEST_NOTIFY_CHANNEL }}
	run: \|
	bussilab check --import
	pip install pytest pytest-cov
	pytest -v
	NUMBA_DISABLE_JIT=1 PYTHONPATH=$PWD pytest -v --cov=bussilab
	bash <(curl -s https://codecov.io/bash)

	macports:
	# The type of runner that the job will run on
	runs-on: ${{ matrix.os }}
	strategy:
	fail-fast: false
	matrix:
	os: [macos-13, macos-14]


	# Steps represent a sequence of tasks that will be executed as part of the job
	steps:
	# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
	- uses: actions/checkout@v3

	# Runs a single command using the runners shell
	- name: Install MacPorts
	run: \|
	curl -LO https://raw.githubusercontent.com/GiovanniBussi/macports-ci/master/macports-ci
	source ./macports-ci install
	- name: Setup environment
	run: \|
	# 3.11 and 3.12 failing for some unknown reason on GHA
	# this is only failing with MacOS-12, maybe it's worth checking why
	# meanwhil they are disabled
	echo MACPORTS_PY_VERSIONS="3.9 3.10" >> $GITHUB_ENV
	- name: Install python
	run: \|
	for pyver in $MACPORTS_PY_VERSIONS
	do
	sudo port install python${pyver//./} py${pyver//./}-{pip,setuptools}
	done
	- name: Install package
	run: \|
	# the re.sub() command is necessary since site.USER_SITE seems to be incorrectly set to
	# /Users/runner/Library/Python/3.9/lib/python/site-packages
	# instead of the correct
	# /Users/runner/Library/Python/3.9/lib/python3.9/site-packages
	for pyver in $MACPORTS_PY_VERSIONS
	do
	# subshell not to pollute paths
	(
	export PATH="$(python$pyver -c 'import site; print(site.USER_BASE + "/bin")'):$PATH"
	export PYTHONPATH="$(python$pyver -c 'import site; import re; print(re.sub("python/","python'$pyver'/",site.USER_SITE))'):$PYTHONPATH"
	pip-$pyver install --user --no-deps .
	sudo port install $(bussilab required --macports --pyver ${pyver//./})
	)
	done
	- name: Run tests
	run: \|
	for pyver in $MACPORTS_PY_VERSIONS
	do
	# subshell not to pollute paths
	(
	export PATH="$(python$pyver -c 'import site; print(site.USER_BASE + "/bin")'):$PATH"
	export PYTHONPATH="$(python$pyver -c 'import site; import re; print(re.sub("python/","python'$pyver'/",site.USER_SITE))'):$PYTHONPATH"
	bussilab check --import
	sudo port install py${pyver//./}-pytest
	# ignore BUSSILAB_TEST_NOTIFY_TOKEN since it does not work with macports for some reason
	pytest-$pyver -v
	)
	done

	conda:

	strategy:
	matrix:
	os: [ubuntu-latest, macos-13, macos-14]

	runs-on: ${{ matrix.os }}

	steps:
	- uses: actions/checkout@v3
	- name: Install conda
	run: \|
	curl -LO https://raw.githubusercontent.com/GiovanniBussi/conda-ci/master/conda-ci
	source ./conda-ci install
	source ./conda-ci install-conda-build
	- name: Build
	run: \|
	source activate base
	python make_conda_recipe.py
	export CPU_COUNT=2
	conda-build -c conda-forge conda
	rm -fr bussilab # make sure this is not imported by mistake in tests
	- name: Test 3.7
	if: ${{ matrix.os != 'macos-14' }}
	run: \|
	source activate base
	conda create -n py37 -c conda-forge -c local python=3.7 py-bussilab pytest
	source activate py37
	pytest -v
	- name: Test 3.8
	run: \|
	source activate base
	conda create -n py38 -c conda-forge -c local python=3.8 py-bussilab pytest
	source activate py38
	pytest -v
	- name: Test 3.9
	run: \|
	source activate base
	conda create -n py39 -c conda-forge -c local python=3.9 py-bussilab pytest
	source activate py39
	pytest -v
	- name: Test 3.10
	run: \|
	source activate base
	conda create -n py310 -c conda-forge -c local python=3.10 py-bussilab pytest
	source activate py310
	pytest -v
	- name: Test 3.11
	run: \|
	source activate base
	conda create -n py311 -c conda-forge -c local python=3.11 py-bussilab pytest
	source activate py311
	pytest -v
	- name: Test 3.12
	run: \|
	source activate base
	conda create -n py311 -c conda-forge -c local python=3.12 py-bussilab pytest
	source activate py311
	pytest -v
	- name: Deploy conda
	if: ${{ matrix.os == 'ubuntu-latest' && startsWith(github.ref, 'refs/tags/') }}
	env:
	CONDA_UPLOAD_TOKEN: ${{ secrets.CONDA_UPLOAD_TOKEN }}
	run: \|
	source activate base
	anaconda -t $CONDA_UPLOAD_TOKEN upload -u bussilab -l main $CONDA_PREFIX/conda-bld//py-bussilab.tar.bz2 --force

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macos 13 (12 is deprecated) #360

Workflow file

macos 13 (12 is deprecated) #360

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Workflow file for this run