obds-to-fhir

This project contains a Kafka Stream processor that creates FHIR resources from Onkostar oBDS-XML data and writes them to a FHIR Topic.

Used FHIR profiles

See package.json for a list of used packages and their versions.

Observations

• Histologie (https://simplifier.net/oncology/histologie)
• Grading (https://simplifier.net/oncology/grading)
• TNMc (https://simplifier.net/oncology/tnmc)
• TNMp (https://simplifier.net/oncology/tnmp)
• Fernmetastasen (https://simplifier.net/oncology/fernmetastasen-duplicate-2)
• Tod Ursache (https://simplifier.net/oncology/todursache)

Condition

• Primärdiagnose (https://simplifier.net/oncology/primaerdiagnose)

Procedure

• Operation (https://simplifier.net/oncology/operation)
• Strahlentherapie (https://simplifier.net/oncology/strahlentherapie)

MedicationStatement

• Systemtherapie (https://simplifier.net/oncology/systemtherapie)

Patient

• Patient (https://simplifier.net/medizininformatikinitiative-modulperson)

Dev

Topology

Dev Stack

• Kafka Broker: $DOCKER_HOST_IP:9094
• Kafka Connect: $DOCKER_HOST_IP:8083
• AKHQ: $DOCKER_HOST_IP:8084
• Oracle DB: jdbc:oracle:thin:@//$DOCKER_HOST_IP:1521/FREEPDB1 (User: DWH_ROUTINE, Password: devPassword)

Run with

From the ./deploy folder:

dc up:

sh up.sh

dc down (except of Oracle database)

sh down.sh

deploy connectors

sh deploy-connectors.sh

reset topics

sh reset-topics.sh