diff --git a/charts/diz-in-a-box/Chart.lock b/charts/diz-in-a-box/Chart.lock index 0afe9a70..abe6b3ed 100644 --- a/charts/diz-in-a-box/Chart.lock +++ b/charts/diz-in-a-box/Chart.lock @@ -4,12 +4,12 @@ dependencies: version: 0.24.0 - name: stream-processors repository: https://miracum.github.io/charts - version: 1.6.0 + version: 1.6.1 - name: hapi-fhir-jpaserver repository: https://hapifhir.github.io/hapi-fhir-jpaserver-starter - version: 0.15.0 + version: 0.16.0 - name: fhir-gateway repository: https://miracum.github.io/charts - version: 6.2.0 -digest: sha256:a8beeea01663ba075258174948eee1c377bdbf1cb70252c01e188003f477bd18 -generated: "2024-02-22T07:51:46.369204628Z" + version: 6.2.2 +digest: sha256:029666ad5de62fa5061c8d5d4a83653626d1e3f4e22642059f40ac6e99c51667 +generated: "2024-05-07T08:30:43.951896129Z" diff --git a/charts/diz-in-a-box/Chart.yaml b/charts/diz-in-a-box/Chart.yaml index 6bd8eec9..754619f3 100644 --- a/charts/diz-in-a-box/Chart.yaml +++ b/charts/diz-in-a-box/Chart.yaml @@ -12,15 +12,15 @@ dependencies: - condition: stream-processors.enabled name: stream-processors repository: https://miracum.github.io/charts - version: 1.6.0 + version: 1.6.1 - condition: hapi-fhir-jpaserver.enabled name: hapi-fhir-jpaserver repository: https://hapifhir.github.io/hapi-fhir-jpaserver-starter - version: 0.15.0 + version: 0.16.0 - condition: fhir-gateway.enabled name: fhir-gateway repository: https://miracum.github.io/charts - version: 6.2.0 + version: 6.2.2 # x-release-please-start-version version: 2.2.1 appVersion: 2.2.1 diff --git a/charts/diz-in-a-box/values.yaml b/charts/diz-in-a-box/values.yaml index d8fa53fd..72b920c2 100644 --- a/charts/diz-in-a-box/values.yaml +++ b/charts/diz-in-a-box/values.yaml @@ -107,7 +107,7 @@ stream-processors: image: registry: ghcr.io repository: miracum/kafka-fhir-to-server - tag: v2.0.6@sha256:155859d275b636e356a99dac3592aa602eef6b68a8f1fe82f7e9670e2be1ef33 + tag: v2.1.4@sha256:95d03992c94dc37a2109b9a0d6ac0963dae33dc396e00e416d29b5a88ce1212b pullPolicy: IfNotPresent env: - name: FHIR_URL @@ -137,7 +137,7 @@ stream-processors: image: registry: ghcr.io repository: miracum/obds-to-fhir - tag: v2.0.15@sha256:c359ef5449068ff0c1231c3ee237801f2fb76932ab9a16386813d02c07ac9f7d + tag: v2.0.17@sha256:f8d44e5915be8b633998cfad6720984dbd52804ff93efe8bb83d6fa4d5fa6a74 pullPolicy: IfNotPresent env: - name: OPENTRACING_JAEGER_ENABLED diff --git a/charts/prerequisites/Chart.lock b/charts/prerequisites/Chart.lock index 37fe327d..e4644cb0 100644 --- a/charts/prerequisites/Chart.lock +++ b/charts/prerequisites/Chart.lock @@ -1,6 +1,6 @@ dependencies: - name: strimzi-kafka-operator repository: oci://quay.io/strimzi-helm - version: 0.39.0 -digest: sha256:c986c32b5483a8d395c49960c179f12d775ce5ef2c55ac5cb63f376d9fc97660 -generated: "2024-01-11T20:52:49.55346174Z" + version: 0.40.0 +digest: sha256:3038e51e139f01f980f5404f2f4c2166c866c92b832ec65313414c8057489ee9 +generated: "2024-05-07T08:30:46.037344007Z" diff --git a/charts/prerequisites/Chart.yaml b/charts/prerequisites/Chart.yaml index 4f68ceed..0ee2e201 100644 --- a/charts/prerequisites/Chart.yaml +++ b/charts/prerequisites/Chart.yaml @@ -7,7 +7,7 @@ kubeVersion: ">= 1.21.0" dependencies: - name: strimzi-kafka-operator repository: oci://quay.io/strimzi-helm - version: 0.39.0 + version: 0.40.0 # x-release-please-start-version version: 2.2.1 appVersion: 2.2.1 diff --git a/docker-compose/compose.full.yaml b/docker-compose/compose.full.yaml index a4ac1619..bcfe023c 100644 --- a/docker-compose/compose.full.yaml +++ b/docker-compose/compose.full.yaml @@ -1,6 +1,6 @@ services: kafka: - image: docker.io/bitnami/kafka:3.6.1@sha256:b5254050e61d1912ed9cf3f7107adc6a21ff29d85047b46d7b6df57cf25fa2f7 + image: docker.io/bitnami/kafka:3.7.0@sha256:b089a21de774087740919d453877e17ab1b19f8a1a767ddad49067292c739760 restart: unless-stopped cap_drop: - ALL diff --git a/docker-compose/compose.obds-to-fhir.yaml b/docker-compose/compose.obds-to-fhir.yaml index 5917ae94..4758bb6a 100644 --- a/docker-compose/compose.obds-to-fhir.yaml +++ b/docker-compose/compose.obds-to-fhir.yaml @@ -1,6 +1,6 @@ services: obds-to-fhir: - image: ghcr.io/miracum/obds-to-fhir:v2.0.15@sha256:c359ef5449068ff0c1231c3ee237801f2fb76932ab9a16386813d02c07ac9f7d + image: ghcr.io/miracum/obds-to-fhir:v2.0.17@sha256:f8d44e5915be8b633998cfad6720984dbd52804ff93efe8bb83d6fa4d5fa6a74 restart: unless-stopped cap_drop: - ALL diff --git a/docker-compose/compose.pseudonymization.yaml b/docker-compose/compose.pseudonymization.yaml index b73d50f7..703547ed 100644 --- a/docker-compose/compose.pseudonymization.yaml +++ b/docker-compose/compose.pseudonymization.yaml @@ -1,6 +1,6 @@ services: fhir-gateway: - image: ghcr.io/miracum/fhir-gateway:v3.12.8@sha256:2cf2d887b25594c04af3d6be302f8ccaea12dee90965fe4e2f81d24786ac3b6d + image: ghcr.io/miracum/fhir-gateway:v3.12.13@sha256:deb71de76d7b472ce3151444468265a770d773e8fe7cea626971f698b21c8cf3 restart: unless-stopped cap_drop: - ALL @@ -32,7 +32,7 @@ services: SERVICES_KAFKA_GENERATE_OUTPUT_TOPIC_REPLACE_WITH: "fhir.pseudonymized." fhir-pseudonymizer: - image: ghcr.io/miracum/fhir-pseudonymizer:v2.21.6@sha256:f250919efe324d31d9d442058256d6af58c0ea26980fc5852544a93cf8a71b1d + image: ghcr.io/miracum/fhir-pseudonymizer:v2.21.9@sha256:659ca7e00ce5a2e69c4b0675cc214c7a4697b6c85ea00bcaaad604037b060ea1 restart: unless-stopped cap_drop: - ALL diff --git a/docker-compose/datashield/compose.datashield.yaml b/docker-compose/datashield/compose.datashield.yaml index 7178f1f9..fd3ef9d6 100644 --- a/docker-compose/datashield/compose.datashield.yaml +++ b/docker-compose/datashield/compose.datashield.yaml @@ -1,6 +1,6 @@ services: opal: - image: docker.io/obiba/opal:4.6@sha256:50abaa400d5b474981c951719301ce4f3c9f5058090cc878e5e82b1b35342881 + image: docker.io/obiba/opal:4.7@sha256:6a46321cb32bd6d2ebf65598060a65970505b8740b94ebc19cefc5cb7ecb4d85 restart: unless-stopped ipc: none security_opt: diff --git a/src/decompose_xmls/compose.yaml b/src/decompose_xmls/compose.yaml index 3f3be7b8..bb423374 100644 --- a/src/decompose_xmls/compose.yaml +++ b/src/decompose_xmls/compose.yaml @@ -12,7 +12,7 @@ services: - ./output-obds-reports:/app/output-obds-reports kafka: - image: docker.io/bitnami/kafka:3.6.1@sha256:b5254050e61d1912ed9cf3f7107adc6a21ff29d85047b46d7b6df57cf25fa2f7 + image: docker.io/bitnami/kafka:3.7.0@sha256:b089a21de774087740919d453877e17ab1b19f8a1a767ddad49067292c739760 restart: unless-stopped profiles: - kafka diff --git a/src/decompose_xmls/requirements.txt b/src/decompose_xmls/requirements.txt index 77830dfe..f8fb1526 100644 --- a/src/decompose_xmls/requirements.txt +++ b/src/decompose_xmls/requirements.txt @@ -1,2 +1,2 @@ -pydantic==1.10.14 +pydantic==1.10.15 confluent-kafka==2.3.0 diff --git a/src/obds_fhir_to_opal/requirements.txt b/src/obds_fhir_to_opal/requirements.txt index 056e543a..26175960 100644 --- a/src/obds_fhir_to_opal/requirements.txt +++ b/src/obds_fhir_to_opal/requirements.txt @@ -1,4 +1,4 @@ pathling==6.2.1 -pydantic==1.10.14 +pydantic==1.10.15 pyspark==3.3.2 -pandas==2.2.0 +pandas==2.2.2