diff --git a/README.md b/README.md index 897ba99a..8f5d79e8 100644 --- a/README.md +++ b/README.md @@ -1,31 +1,30 @@

- +

-# pypdf_table_extraction (Camelot): PDF Table Extraction for Humans +# Camelot: PDF Table Extraction for Humans -[![tests](https://github.com/py-pdf/pypdf_table_extraction/actions/workflows/tests.yml/badge.svg)](https://github.com/py-pdf/pypdf_table_extraction/actions/workflows/tests.yml) [![Documentation Status](https://readthedocs.org/projects/pypdf-table-extraction/badge/?version=latest)](https://pypdf-table-extraction.readthedocs.io/en/latest/) -[![codecov.io](https://codecov.io/github/py-pdf/pypdf_table_extraction/badge.svg?branch=main&service=github)](https://codecov.io/github/py-pdf/pypdf_table_extraction/?branch=main) -[![image](https://img.shields.io/pypi/v/pypdf-table-extraction.svg)](https://pypi.org/project/pypdf-table-extraction/) [![image](https://img.shields.io/pypi/l/pypdf-table-extraction.svg)](https://pypi.org/project/pypdf-table-extraction/) [![image](https://img.shields.io/pypi/pyversions/pypdf-table-extraction.svg)](https://pypi.org/project/pypdf-table-extraction/) +[![tests](https://github.com/camelot-dev/camelot/actions/workflows/tests.yml/badge.svg)](https://github.com/camelot-dev/camelot/actions/workflows/tests.yml) [![Documentation Status](https://readthedocs.org/projects/camelot-py/badge/?version=master)](https://camelot-py.readthedocs.io/en/master/) +[![codecov.io](https://codecov.io/github/camelot-dev/camelot/badge.svg?branch=master&service=github)](https://codecov.io/github/camelot-dev/camelot?branch=master) +[![image](https://img.shields.io/pypi/v/camelot-py.svg)](https://pypi.org/project/camelot-py/) [![image](https://img.shields.io/pypi/l/camelot-py.svg)](https://pypi.org/project/camelot-py/) [![image](https://img.shields.io/pypi/pyversions/camelot-py.svg)](https://pypi.org/project/camelot-py/) -**pypdf_table_extraction** Formerly known as [Camelot](https://github.com/camelot-dev/camelot) is a Python library that can help you extract tables from PDFs! +**Camelot** is a Python library that can help you extract tables from PDFs! --- **Here's how you can extract tables from PDFs.** -You can check out the quickstart notebook. [![image](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/py-pdf/pypdf_table_extraction/blob/main/examples/pypdf_table_extraction_quick_start_notebook.ipynb) +You can check out the quickstart notebook. [![image](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/py-pdf/pypdf_table_extraction/blob/main/examples/pypdf_table_extraction_quick_start_notebook.ipynb) or follow the example below. -Or follow the example below. -You can check out the PDF used in this example [here](https://github.com/py-pdf/pypdf_table_extraction/blob/main/docs/_static/pdf/foo.pdf). +You can check out the PDF used in this example [here](https://github.com/camelot-dev/camelot/blob/main/docs/_static/pdf/foo.pdf). ```python3 ->>> import pypdf_table_extraction ->>> tables = pypdf_table_extraction.read_pdf('foo.pdf') +>>> import camelot +>>> tables = camelot.read_pdf('foo.pdf') >>> tables - +<TableList n=1> >>> tables.export('foo.csv', f='csv', compress=True) # json, excel, html, markdown, sqlite >>> tables[0] - +<Table shape=(7, 7)> >>> tables[0].parsing_report { 'accuracy': 99.02, @@ -46,60 +45,60 @@ You can check out the PDF used in this example [here](https://github.com/py-pdf/ | 2032_2 | 0.17 | 57.8 | 21.7% | 0.3% | 2.7% | 1.2% | | 4171_1 | 0.07 | 173.9 | 58.1% | 1.6% | 2.1% | 0.5% | -pypdf_table_extraction also comes packaged with a [command-line interface](https://pypdf-table-extraction.readthedocs.io/en/latest/user/cli.html)! +Camelot also comes packaged with a [command-line interface](https://camelot-py.readthedocs.io/en/latest/user/cli.html)! -Refer to the [QuickStart Guide](https://github.com/py-pdf/pypdf_table_extraction/blob/main/docs/user/quickstart.rst#quickstart) to quickly get started with pypdf_table_extraction, extract tables from PDFs and explore some basic options. +Refer to the [QuickStart Guide](https://github.com/camelot-dev/camelot/blob/main/docs/user/quickstart.rst#quickstart) to quickly get started with Camelot, extract tables from PDFs and explore some basic options. **Tip:** Visit the `parser-comparison-notebook` to get an overview of all the packed parsers and their features. [![image](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/py-pdf/pypdf_table_extraction/blob/main/examples/parser-comparison-notebook.ipynb) -**Note:** pypdf_table_extraction only works with text-based PDFs and not scanned documents. (As Tabula [explains](https://github.com/tabulapdf/tabula#why-tabula), "If you can click and drag to select text in your table in a PDF viewer, then your PDF is text-based".) +**Note:** Camelot only works with text-based PDFs and not scanned documents. (As Tabula [explains](https://github.com/tabulapdf/tabula#why-tabula), "If you can click and drag to select text in your table in a PDF viewer, then your PDF is text-based".) -You can check out some frequently asked questions [here](https://pypdf-table-extraction.readthedocs.io/en/latest/user/faq.html). +You can check out some frequently asked questions [here](https://camelot-py.readthedocs.io/en/latest/user/faq.html). -## Why pypdf_table_extraction? +## Why Camelot? -- **Configurability**: pypdf_table_extraction gives you control over the table extraction process with [tweakable settings](https://pypdf-table-extraction.readthedocs.io/en/latest/user/advanced.html). +- **Configurability**: Camelot gives you control over the table extraction process with [tweakable settings](https://camelot-py.readthedocs.io/en/latest/user/advanced.html). - **Metrics**: You can discard bad tables based on metrics like accuracy and whitespace, without having to manually look at each table. - **Output**: Each table is extracted into a **pandas DataFrame**, which seamlessly integrates into [ETL and data analysis workflows](https://gist.github.com/vinayak-mehta/e5949f7c2410a0e12f25d3682dc9e873). You can also export tables to multiple formats, which include CSV, JSON, Excel, HTML, Markdown, and Sqlite. -See [comparison with similar libraries and tools](https://github.com/py-pdf/pypdf_table_extraction/wiki/Comparison-with-other-PDF-Table-Extraction-libraries-and-tools). +See [comparison with similar libraries and tools](https://github.com/camelot-dev/camelot/wiki/Comparison-with-other-PDF-Table-Extraction-libraries-and-tools). ## Installation ### Using conda -The easiest way to install pypdf_table_extraction is with [conda](https://conda.io/docs/), which is a package manager and environment management system for the [Anaconda](http://docs.continuum.io/anaconda/) distribution. +The easiest way to install Camelot is with [conda](https://conda.io/docs/), which is a package manager and environment management system for the [Anaconda](http://docs.continuum.io/anaconda/) distribution. ```bash -conda install -c conda-forge pypdf-table-extraction +conda install -c conda-forge camelot-py ``` ### Using pip -After [installing the dependencies](https://pypdf-table-extraction.readthedocs.io/en/latest/user/install-deps.html) ([tk](https://packages.ubuntu.com/bionic/python/python-tk) and [ghostscript](https://www.ghostscript.com/)), you can also just use pip to install pypdf_table_extraction: +After [installing the dependencies](https://camelot-py.readthedocs.io/en/latest/user/install-deps.html) ([tk](https://packages.ubuntu.com/bionic/python/python-tk) and [ghostscript](https://www.ghostscript.com/)), you can also just use pip to install Camelot: ```bash -pip install pypdf-table-extraction +pip install "camelot-py[base]" ``` ### From the source code -After [installing the dependencies](https://pypdf-table-extraction.readthedocs.io/en/latest/user/install.html#using-pip), clone the repo using: +After [installing the dependencies](https://camelot-py.readthedocs.io/en/latest/user/install.html#using-pip), clone the repo using: ```bash -git clone https://github.com/py-pdf/pypdf_table_extraction.git +git clone https://github.com/camelot-dev/camelot.git ``` and install using pip: ``` -cd pypdf_table_extraction +cd camelot pip install "." ``` ## Documentation -The documentation is available at [http://pypdf-table-extraction.readthedocs.io/](http://pypdf-table-extraction.readthedocs.io/). +The documentation is available at [http://camelot-py.readthedocs.io/](http://camelot-py.readthedocs.io/). ## Wrappers @@ -107,16 +106,16 @@ The documentation is available at [http://pypdf-table-extraction.readthedocs.io/ ## Related projects -- [camelot-sharp](https://github.com/BobLd/camelot-sharp) provides a C sharp implementation of pypdf_table_extraction (Camelot). +- [camelot-sharp](https://github.com/BobLd/camelot-sharp) provides a C sharp implementation of Camelot. ## Contributing -The [Contributor's Guide](https://pypdf-table-extraction.readthedocs.io/en/latest/dev/contributing.html) has detailed information about contributing issues, documentation, code, and tests. +The [Contributor's Guide](https://camelot-py.readthedocs.io/en/latest/dev/contributing.html) has detailed information about contributing issues, documentation, code, and tests. ## Versioning -pypdf_table_extraction uses [Semantic Versioning](https://semver.org/). For the available versions, see the tags on this repository. For the changelog, you can check out the [releases](https://github.com/py-pdf/pypdf_table_extraction/releases) page. +Camelot uses [Semantic Versioning](https://semver.org/). For the available versions, see the tags on this repository. For the changelog, you can check out the [releases](https://github.com/camelot-dev/camelot/releases) page. ## License -This project is licensed under the MIT License, see the [LICENSE](https://github.com/py-pdf/pypdf_table_extraction/blob/main/LICENSE) file for details. +This project is licensed under the MIT License, see the [LICENSE](https://github.com/camelot-dev/camelot/blob/main/LICENSE) file for details. diff --git a/camelot/backends/base.py b/camelot/backends/base.py index ab7c8e97..7f570cee 100644 --- a/camelot/backends/base.py +++ b/camelot/backends/base.py @@ -2,7 +2,6 @@ class ConversionBackend: # noqa D101 - def installed(self) -> bool: # noqa D102 raise NotImplementedError diff --git a/camelot/core.py b/camelot/core.py index c4f38bef..7b4aa679 100644 --- a/camelot/core.py +++ b/camelot/core.py @@ -9,25 +9,25 @@ import tempfile import zipfile from operator import itemgetter -from typing import Any -from typing import Iterable -from typing import Iterator +from typing import Any, Iterable, Iterator import cv2 import pandas as pd - if sys.version_info >= (3, 11): - from typing import TypedDict # pylint: disable=no-name-in-module - from typing import Unpack + from typing import ( + TypedDict, # pylint: disable=no-name-in-module + Unpack, + ) else: from typing_extensions import TypedDict, Unpack from .backends import ImageConversionBackend -from .utils import build_file_path_in_temp_dir -from .utils import get_index_closest_point -from .utils import get_textline_coords - +from .utils import ( + build_file_path_in_temp_dir, + get_index_closest_point, + get_textline_coords, +) # minimum number of vertical textline intersections for a textedge # to be considered valid diff --git a/camelot/io.py b/camelot/io.py index 6bef46a1..43301132 100644 --- a/camelot/io.py +++ b/camelot/io.py @@ -20,7 +20,7 @@ def read_pdf( parallel=False, layout_kwargs=None, debug=False, - **kwargs + **kwargs, ): """Read PDF and return extracted tables. @@ -136,6 +136,6 @@ def read_pdf( suppress_stdout=suppress_stdout, parallel=parallel, layout_kwargs=layout_kwargs, - **kwargs + **kwargs, ) return tables diff --git a/camelot/parsers/hybrid.py b/camelot/parsers/hybrid.py index d42a0cda..bfa4cf38 100644 --- a/camelot/parsers/hybrid.py +++ b/camelot/parsers/hybrid.py @@ -56,7 +56,7 @@ def __init__( row_tol=2, column_tol=0, debug=False, - **kwargs + **kwargs, ): super().__init__( "hybrid", diff --git a/examples/hybrid-parser-step-by-step.ipynb b/examples/hybrid-parser-step-by-step.ipynb index a5a5ccae..76cecfc9 100644 --- a/examples/hybrid-parser-step-by-step.ipynb +++ b/examples/hybrid-parser-step-by-step.ipynb @@ -26,6 +26,7 @@ "outputs": [], "source": [ "import os\n", + "\n", "os.getcwd()\n", "# Install from source\n", "!git clone -b main https://github.com/py-pdf/pypdf_table_extraction.git src\n", @@ -59,10 +60,15 @@ "source": [ "# Bootstrap and common imports\n", "import sys, time\n", - "sys.path.insert(0, os.path.abspath('')) # Prefer the local version of pypdf_table_extraction if available\n", + "\n", + "sys.path.insert(\n", + " 0, os.path.abspath(\"\")\n", + ") # Prefer the local version of pypdf_table_extraction if available\n", "import pypdf_table_extraction\n", "\n", - "print(f\"Using pypdf_table_extraction v{pypdf_table_extraction.__version__} from file {pypdf_table_extraction.__file__}.\")\n", + "print(\n", + " f\"Using pypdf_table_extraction v{pypdf_table_extraction.__version__} from file {pypdf_table_extraction.__file__}.\"\n", + ")\n", "\n", "# Select a pdf to analyze.\n", "kwargs = {}\n", @@ -115,21 +121,23 @@ "# pdf_file, kwargs = \"tabula/schools.pdf\", {\"pages\": \"all\"} # network parser hangs on contour plot\n", "\n", "filename = os.path.join(\n", - " os.path.dirname(os.path.abspath('.')),\n", - " \"src/tests/files\",\n", - " pdf_file\n", + " os.path.dirname(os.path.abspath(\".\")), \"src/tests/files\", pdf_file\n", ")\n", "\n", "# Set up plotting options\n", "import matplotlib.pyplot as plt\n", + "\n", "%matplotlib inline\n", "PLOT_HEIGHT = 12\n", + "\n", + "\n", "def init_figure_and_axis(title):\n", " fig = plt.figure(figsize=(PLOT_HEIGHT * 2.5, PLOT_HEIGHT))\n", " ax = fig.add_subplot(111)\n", " ax.set_title(title)\n", " return fig, ax\n", "\n", + "\n", "# Utility function to display tables\n", "def display_parse_results(tables, parse_time, flavor):\n", " if not tables:\n", @@ -139,10 +147,13 @@ " lambda table: \"{rows}x{cols}\".format(\n", " rows=table.shape[0],\n", " cols=table.shape[1],\n", - " ), tables\n", + " ),\n", + " tables,\n", " )\n", " )\n", - " print(f\"The {flavor} parser found {len(tables)} table(s) ({tables_dims}) in {parse_time:.2f}s\")\n", + " print(\n", + " f\"The {flavor} parser found {len(tables)} table(s) ({tables_dims}) in {parse_time:.2f}s\"\n", + " )\n", " for table in tables:\n", " display(table.df)" ] @@ -288,8 +299,7 @@ " fig, ax = init_figure_and_axis(f\"Line structure in PDF\\n{pdf_file}\")\n", " pypdf_table_extraction.plot(tables[0], kind=\"line\", ax=ax)\n", "else:\n", - " print(\"No table found for this document.\")\n", - "\n" + " print(\"No table found for this document.\")" ] }, { @@ -309,7 +319,7 @@ "source": [ "for table in tables:\n", " fig, ax = init_figure_and_axis(f\"Contour structure in PDF\\n{pdf_file}\")\n", - " pypdf_table_extraction.plot(table, kind=\"contour\", ax=ax)\n" + " pypdf_table_extraction.plot(table, kind=\"contour\", ax=ax)" ] }, { @@ -329,7 +339,7 @@ "source": [ "for table in tables:\n", " fig, ax = init_figure_and_axis(f\"Joint structure in PDF\\n{pdf_file}\")\n", - " pypdf_table_extraction.plot(table, kind=\"joint\", ax=ax)\n" + " pypdf_table_extraction.plot(table, kind=\"joint\", ax=ax)" ] }, { @@ -351,7 +361,7 @@ }, "outputs": [], "source": [ - "display_parse_results(tables, timer_after_parse - timer_before_parse, flavor)\n" + "display_parse_results(tables, timer_after_parse - timer_before_parse, flavor)" ] }, { diff --git a/examples/parser-comparison-notebook.ipynb b/examples/parser-comparison-notebook.ipynb index 17ba8120..f1269349 100644 --- a/examples/parser-comparison-notebook.ipynb +++ b/examples/parser-comparison-notebook.ipynb @@ -23,6 +23,7 @@ "outputs": [], "source": [ "import os\n", + "\n", "os.getcwd()\n", "# Install from source\n", "!git clone -b main https://github.com/py-pdf/pypdf_table_extraction.git src\n", @@ -47,10 +48,15 @@ "source": [ "# Bootstrap and common imports\n", "import sys, time\n", - "sys.path.insert(0, os.path.abspath('')) # Prefer the local version of pypdf_table_extraction if available\n", + "\n", + "sys.path.insert(\n", + " 0, os.path.abspath(\"\")\n", + ") # Prefer the local version of pypdf_table_extraction if available\n", "import pypdf_table_extraction\n", "\n", - "print(f\"Using pypdf_table_extraction v{pypdf_table_extraction.__version__} from file {pypdf_table_extraction.__file__}.\")" + "print(\n", + " f\"Using pypdf_table_extraction v{pypdf_table_extraction.__version__} from file {pypdf_table_extraction.__file__}.\"\n", + ")" ] }, { @@ -119,10 +125,8 @@ "# pdf_file, kwargs = \"tabula/schools.pdf\", {\"pages\": \"all\"} # network parser hangs on contour plot\n", "\n", "filename = os.path.join(\n", - " os.path.dirname(os.path.abspath('.')),\n", - " \"src/tests/files\",\n", - " pdf_file\n", - ")\n" + " os.path.dirname(os.path.abspath(\".\")), \"src/tests/files\", pdf_file\n", + ")" ] }, { @@ -141,7 +145,9 @@ " timer_before_parse = time.perf_counter()\n", " error, tables = None, []\n", " try:\n", - " tables = pypdf_table_extraction.read_pdf(filename, flavor=flavor, debug=True, **kwargs)\n", + " tables = pypdf_table_extraction.read_pdf(\n", + " filename, flavor=flavor, debug=True, **kwargs\n", + " )\n", " except ValueError as value_error:\n", " error = f\"Invalid argument for parser {flavor}: {value_error}\"\n", " print(error)\n", @@ -151,7 +157,7 @@ " parses[flavor] = {\n", " \"tables\": tables,\n", " \"time\": timer_after_parse - timer_before_parse,\n", - " \"error\": error\n", + " \"error\": error,\n", " }\n", "\n", " print(f\"##### {flavor} ####\")\n", @@ -161,15 +167,14 @@ " for previous_flavor, previous_tables in tables_parsed.items():\n", " for prev_idx, previous_table in enumerate(previous_tables):\n", " if previous_table.df.equals(table.df):\n", - " flavors_matching.append(\n", - " f\"{previous_flavor} table {prev_idx}\")\n", + " flavors_matching.append(f\"{previous_flavor} table {prev_idx}\")\n", " print(f\"## Table {idx} ##\")\n", " if flavors_matching:\n", " print(f\"Same as {', '.join(flavors_matching)}.\")\n", " else:\n", " display(table.df)\n", " print(\"\")\n", - " tables_parsed[flavor] = tables\n" + " tables_parsed[flavor] = tables" ] }, { @@ -187,49 +192,54 @@ }, "outputs": [], "source": [ - "\n", "# Set up plotting options\n", "import matplotlib.pyplot as plt\n", + "\n", "%matplotlib inline\n", "PLOT_HEIGHT = 12\n", "\n", "row_count = max(max_tables, 1)\n", "plt.rcParams[\"figure.figsize\"] = [PLOT_HEIGHT * len(FLAVORS), PLOT_HEIGHT * row_count]\n", "fig, axes = plt.subplots(row_count, len(FLAVORS))\n", - "plt.subplots_adjust(wspace=0, hspace=0) # Reduce margins to maximize the display zone\n", + "plt.subplots_adjust(wspace=0, hspace=0) # Reduce margins to maximize the display zone\n", "\n", - "fig.suptitle('Side-by-side flavor comparison', fontsize=24, fontweight='bold')\n", + "fig.suptitle(\"Side-by-side flavor comparison\", fontsize=24, fontweight=\"bold\")\n", "for idx, flavor in enumerate(FLAVORS):\n", " parse = parses[flavor]\n", " tables = parse[\"tables\"]\n", " top_ax = axes.flat[idx]\n", - " title = f\"{flavor}\\n\" \\\n", - " f\"Detected {len(tables)} table(s) in {parse['time']:.2f}s\"\n", - " if parse['error']:\n", + " title = f\"{flavor}\\n\" f\"Detected {len(tables)} table(s) in {parse['time']:.2f}s\"\n", + " if parse[\"error\"]:\n", " title = title + f\"\\nError parsing: {parse['error']}\"\n", - " top_ax.set_title(title, fontsize=12, fontweight='bold')\n", + " top_ax.set_title(title, fontsize=12, fontweight=\"bold\")\n", " for table_idx, table in enumerate(tables):\n", - " if max_tables > 1:\n", - " ax = axes[table_idx][idx]\n", - " else:\n", - " ax = axes[idx]\n", - " # Check if the table has data before attempting to plot it\n", - " if table.shape[0] > 0 and table.shape[1] > 0: # Check if table has rows and columns\n", - " fig = camelot.plot(table, kind='grid', ax=ax)\n", - " ax.text(\n", - " 0.5, -0.1,\n", - " \"{flavor} table {table_idx} - {rows}x{cols}\".format(\n", - " flavor=flavor,\n", - " table_idx=table_idx,\n", - " rows=table.shape[0],\n", - " cols=table.shape[1],\n", - " ),\n", - " size=14, ha=\"center\",\n", - " transform=ax.transAxes\n", - " )\n", - " else:\n", - " print(f\"Skipping plotting for empty table {table_idx} in {flavor}\") # Inform user about the skipped table\n", - " timer_after_plot = time.perf_counter()\n" + " if max_tables > 1:\n", + " ax = axes[table_idx][idx]\n", + " else:\n", + " ax = axes[idx]\n", + " # Check if the table has data before attempting to plot it\n", + " if (\n", + " table.shape[0] > 0 and table.shape[1] > 0\n", + " ): # Check if table has rows and columns\n", + " fig = camelot.plot(table, kind=\"grid\", ax=ax)\n", + " ax.text(\n", + " 0.5,\n", + " -0.1,\n", + " \"{flavor} table {table_idx} - {rows}x{cols}\".format(\n", + " flavor=flavor,\n", + " table_idx=table_idx,\n", + " rows=table.shape[0],\n", + " cols=table.shape[1],\n", + " ),\n", + " size=14,\n", + " ha=\"center\",\n", + " transform=ax.transAxes,\n", + " )\n", + " else:\n", + " print(\n", + " f\"Skipping plotting for empty table {table_idx} in {flavor}\"\n", + " ) # Inform user about the skipped table\n", + " timer_after_plot = time.perf_counter()" ] } ], diff --git a/examples/pypdf_table_extraction_quick_start_notebook.ipynb b/examples/pypdf_table_extraction_quick_start_notebook.ipynb index 1a5a7b2a..ee369129 100644 --- a/examples/pypdf_table_extraction_quick_start_notebook.ipynb +++ b/examples/pypdf_table_extraction_quick_start_notebook.ipynb @@ -35,11 +35,14 @@ "source": [ "# Bootstrap and common imports\n", "import os, sys, time\n", - "sys.path.insert(0, os.path.abspath('')) # Prefer the local version if available\n", + "\n", + "sys.path.insert(0, os.path.abspath(\"\")) # Prefer the local version if available\n", "\n", "import pypdf_table_extraction\n", "\n", - "print(f\"Using pypdf_table_extraction v{pypdf_table_extraction.__version__} from file {pypdf_table_extraction.__file__}.\")\n" + "print(\n", + " f\"Using pypdf_table_extraction v{pypdf_table_extraction.__version__} from file {pypdf_table_extraction.__file__}.\"\n", + ")" ] }, { @@ -57,6 +60,7 @@ "import shutil\n", "from pathlib import Path\n", "\n", + "\n", "# Function to delete a directory and its contents\n", "def delete_directory(path):\n", " try:\n", @@ -67,19 +71,20 @@ " except Exception as e:\n", " print(f\"Error deleting directory {path}: {e}\")\n", "\n", + "\n", "# Delete /content/sample_data if it exists\n", - "sample_data_dir = Path('/content/sample_data')\n", + "sample_data_dir = Path(\"/content/sample_data\")\n", "if sample_data_dir.exists():\n", " print(\"Deleting /content/sample_data directory...\")\n", " delete_directory(sample_data_dir)\n", "\n", "# Create the necessary directories\n", - "os.makedirs('/content/output', exist_ok=True)\n", - "os.makedirs('/content/sample_pdfs', exist_ok=True)\n", + "os.makedirs(\"/content/output\", exist_ok=True)\n", + "os.makedirs(\"/content/sample_pdfs\", exist_ok=True)\n", "\n", "# Define input and output directories\n", - "input_dir = Path('/content/sample_pdfs')\n", - "output_dir = Path('/content/output')\n", + "input_dir = Path(\"/content/sample_pdfs\")\n", + "output_dir = Path(\"/content/output\")\n", "\n", "print(\"Directories set up complete.\")\n", "print(f\"Input directory: {input_dir}\")\n", @@ -106,8 +111,8 @@ "\n", "# Move uploaded files to /content/sample_pdfs and remove from /content\n", "for filename in uploaded.keys():\n", - " src_path = Path('/content') / filename\n", - " dst_path = Path('/content/sample_pdfs') / filename\n", + " src_path = Path(\"/content\") / filename\n", + " dst_path = Path(\"/content/sample_pdfs\") / filename\n", " if src_path.exists():\n", " shutil.move(str(src_path), str(dst_path))\n", " print(f\"Moved {filename} to /content/sample_pdfs\")\n", @@ -115,7 +120,7 @@ " print(f\"Warning: {filename} not found in /content\")\n", "\n", "# Clean up any remaining PDF files in /content\n", - "for file in Path('/content').glob('*.pdf'):\n", + "for file in Path(\"/content\").glob(\"*.pdf\"):\n", " os.remove(file)\n", " print(f\"Removed {file.name} from /content\")\n", "\n", @@ -123,11 +128,11 @@ "\n", "# Verify contents of /content/sample_pdfs\n", "print(\"\\nContents of /content/sample_pdfs:\")\n", - "print(os.listdir('/content/sample_pdfs'))\n", + "print(os.listdir(\"/content/sample_pdfs\"))\n", "\n", "# Verify no PDF files in /content\n", "print(\"\\nChecking for PDF files in /content:\")\n", - "content_pdfs = list(Path('/content').glob('*.pdf'))\n", + "content_pdfs = list(Path(\"/content\").glob(\"*.pdf\"))\n", "if content_pdfs:\n", " print(\"Warning: Found these PDF files in /content:\")\n", " for pdf in content_pdfs:\n", @@ -151,15 +156,19 @@ "import requests\n", "# from pathlib import Path\n", "\n", + "\n", "def convert_github_url_to_raw(url):\n", " if \"github.com\" in url and \"/blob/\" in url:\n", - " raw_url = url.replace(\"github.com\", \"raw.githubusercontent.com\").replace(\"/blob/\", \"/\")\n", + " raw_url = url.replace(\"github.com\", \"raw.githubusercontent.com\").replace(\n", + " \"/blob/\", \"/\"\n", + " )\n", " return raw_url\n", " else:\n", " return \"Invalid GitHub URL\"\n", "\n", + "\n", "# Sample .pdf data from GitHub\n", - "pdf_url = 'https://github.com/py-pdf/pypdf_table_extraction/blob/main/docs/_static/pdf/foo.pdf' # @param {type:\"string\"}\n", + "pdf_url = \"https://github.com/py-pdf/pypdf_table_extraction/blob/main/docs/_static/pdf/foo.pdf\" # @param {type:\"string\"}\n", "\n", "# Convert the GitHub URL to the raw content URL\n", "pdf_url = convert_github_url_to_raw(pdf_url)\n", @@ -169,7 +178,7 @@ " raise ValueError(\"The provided GitHub URL is invalid.\")\n", "\n", "# Create the /content/sample_pdfs directory if it doesn't exist\n", - "sample_pdfs_dir = Path('/content/sample_pdfs')\n", + "sample_pdfs_dir = Path(\"/content/sample_pdfs\")\n", "sample_pdfs_dir.mkdir(parents=True, exist_ok=True)\n", "\n", "# Download the PDF\n", @@ -183,7 +192,7 @@ "pdf_file_path = sample_pdfs_dir / filename\n", "\n", "# Save the file, overwriting if it already exists\n", - "with open(pdf_file_path, 'wb') as file:\n", + "with open(pdf_file_path, \"wb\") as file:\n", " file.write(response.content)\n", "\n", "print(f\"PDF file downloaded and saved to: {pdf_file_path}\")" @@ -200,13 +209,17 @@ "# import pypdf_table_extraction\n", "import logging\n", "import pandas as pd\n", + "\n", "# from pathlib import Path\n", "from pypdf import PdfReader\n", "from IPython.display import display\n", "\n", "# Set up logging\n", "logging.getLogger(\"camelot\").setLevel(logging.DEBUG)\n", - "logging.basicConfig(level=logging.DEBUG, format='%(asctime)s - %(levelname)s - %(message)s')\n", + "logging.basicConfig(\n", + " level=logging.DEBUG, format=\"%(asctime)s - %(levelname)s - %(message)s\"\n", + ")\n", + "\n", "\n", "def process_pdf(pdf_file, output_dir):\n", " print(f\"Processing {pdf_file.name}\")\n", @@ -261,11 +274,14 @@ " logging.info(table.parsing_report)\n", " except Exception as e:\n", " print(f\"Failed to process or save table {i+1} from {pdf_file.name}: {e}\")\n", - " logging.error(f\"Failed to process or save table {i+1} from {pdf_file.name}: {e}\")\n", + " logging.error(\n", + " f\"Failed to process or save table {i+1} from {pdf_file.name}: {e}\"\n", + " )\n", + "\n", "\n", "# Define input_dir and output_dir\n", - "input_dir = Path('/content/sample_pdfs')\n", - "output_dir = Path('/content/output')\n", + "input_dir = Path(\"/content/sample_pdfs\")\n", + "output_dir = Path(\"/content/output\")\n", "\n", "print(f\"Input directory: {input_dir}\")\n", "print(f\"Output directory: {output_dir}\")\n", @@ -274,7 +290,7 @@ "output_dir.mkdir(exist_ok=True)\n", "\n", "# Process each PDF in the input directory\n", - "pdf_files = list(input_dir.glob('*.pdf'))\n", + "pdf_files = list(input_dir.glob(\"*.pdf\"))\n", "print(f\"Found {len(pdf_files)} PDF files\")\n", "\n", "if len(pdf_files) == 0:\n", @@ -308,20 +324,22 @@ "from tabulate import tabulate\n", "\n", "# Create output directory if it doesn't exist\n", - "output_dir = Path('/content/output')\n", + "output_dir = Path(\"/content/output\")\n", "output_dir.mkdir(parents=True, exist_ok=True)\n", "\n", "# Process all PDF files in the input directory\n", - "input_dir = Path('/content/sample_pdfs')\n", - "for pdf_file in input_dir.glob('*.pdf'):\n", + "input_dir = Path(\"/content/sample_pdfs\")\n", + "for pdf_file in input_dir.glob(\"*.pdf\"):\n", " print(f\"\\nProcessing {pdf_file.name}\")\n", "\n", " # Using 'network' parsing method with table_areas\n", - " tables_network = pypdf_table_extraction.read_pdf(str(pdf_file), flavor='network')\n", + " tables_network = pypdf_table_extraction.read_pdf(str(pdf_file), flavor=\"network\")\n", "\n", " if len(tables_network) == 0:\n", " # If no tables are detected, try using 'lattice' parser\n", - " tables_lattice = pypdf_table_extraction.read_pdf(str(pdf_file), flavor='lattice', table_areas=['50,750,500,50'])\n", + " tables_lattice = pypdf_table_extraction.read_pdf(\n", + " str(pdf_file), flavor=\"lattice\", table_areas=[\"50,750,500,50\"]\n", + " )\n", "\n", " # Checking the detected tables\n", " if len(tables_network) > 0:\n", @@ -334,21 +352,29 @@ " # Exporting if tables are found\n", " if len(tables) > 0:\n", " output_base = output_dir / pdf_file.stem\n", - " tables.export(f'{output_base}.csv', f='csv', compress=True) # export all tables to CSV\n", - " tables[0].to_csv(f'{output_base}_first_table.csv') # Save the first table to CSV\n", + " tables.export(\n", + " f\"{output_base}.csv\", f=\"csv\", compress=True\n", + " ) # export all tables to CSV\n", + " tables[0].to_csv(\n", + " f\"{output_base}_first_table.csv\"\n", + " ) # Save the first table to CSV\n", " df = tables[0].df # Get the first table as a pandas DataFrame\n", - " \n", + "\n", " print(f\"Tables found in {pdf_file.name}:\")\n", - " \n", + "\n", " # Clean up the DataFrame\n", - " df = df.applymap(lambda x: x.strip() if isinstance(x, str) else x) # Remove leading/trailing whitespace\n", - " df = df.replace(['', 'nan', 'NaN', 'NULL'], np.nan).dropna(how='all') # Remove empty rows\n", - " df = df.fillna('') # Replace NaN with empty string for display\n", + " df = df.applymap(\n", + " lambda x: x.strip() if isinstance(x, str) else x\n", + " ) # Remove leading/trailing whitespace\n", + " df = df.replace([\"\", \"nan\", \"NaN\", \"NULL\"], np.nan).dropna(\n", + " how=\"all\"\n", + " ) # Remove empty rows\n", + " df = df.fillna(\"\") # Replace NaN with empty string for display\n", " df = df.reset_index(drop=True) # Reset index after dropping rows\n", - " \n", + "\n", " # Display the clean DataFrame\n", - " print(tabulate(df, headers='keys', tablefmt='pretty', showindex=False))\n", - " \n", + " print(tabulate(df, headers=\"keys\", tablefmt=\"pretty\", showindex=False))\n", + "\n", " print(f\"\\nShape of the DataFrame: {df.shape}\")\n", " print(f\"\\nParsing report: {tables[0].parsing_report}\")\n", " else:\n", @@ -373,7 +399,7 @@ "# import os\n", "\n", "# Define the directories to be cleared\n", - "directories_to_clear = ['/content/output', '/content/sample_pdfs']\n", + "directories_to_clear = [\"/content/output\", \"/content/sample_pdfs\"]\n", "\n", "# Warning message\n", "print(\"⚠️ WARNING: This will delete all contents of the following directories:\")\n", @@ -382,7 +408,7 @@ "\n", "confirmation = input(\"Type 'YES' to confirm: \")\n", "\n", - "if confirmation == 'YES':\n", + "if confirmation == \"YES\":\n", " for directory in directories_to_clear:\n", " dir_path = Path(directory)\n", " if dir_path.exists() and dir_path.is_dir():\n", @@ -396,7 +422,7 @@ " else:\n", " print(f\"The '{directory}' directory does not exist.\")\n", "else:\n", - 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No files were deleted.\")\n" + " print(\"Operation cancelled. No files were deleted.\")" ] } ], diff --git a/poetry.lock b/poetry.lock deleted file mode 100644 index 59ecff1d..00000000 --- a/poetry.lock +++ /dev/null @@ -1,3155 +0,0 @@ -# This file is automatically @generated by Poetry 1.8.5 and should not be changed by hand. - -[[package]] -name = "accessible-pygments" -version = "0.0.4" -description = "A collection of accessible pygments styles" -optional = false -python-versions = "*" -files = [ - {file = "accessible-pygments-0.0.4.tar.gz", hash = "sha256:e7b57a9b15958e9601c7e9eb07a440c813283545a20973f2574a5f453d0e953e"}, - {file = "accessible_pygments-0.0.4-py2.py3-none-any.whl", hash = "sha256:416c6d8c1ea1c5ad8701903a20fcedf953c6e720d64f33dc47bfb2d3f2fa4e8d"}, -] - -[package.dependencies] -pygments = ">=1.5" - -[[package]] -name = "alabaster" -version = "0.7.13" -description = "A configurable sidebar-enabled Sphinx theme" -optional = false -python-versions = ">=3.6" -files = [ - {file = "alabaster-0.7.13-py3-none-any.whl", hash = "sha256:1ee19aca801bbabb5ba3f5f258e4422dfa86f82f3e9cefb0859b283cdd7f62a3"}, - 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-packages = [ - { include = "camelot", from = "." }, - { include = "pypdf_table_extraction", from = "." }, +authors = [ + {name = "Vinayak Mehta", email = "vmehta94@gmail.com"}, ] +license = {text = "MIT"} +readme = "README.md" classifiers = [ "Development Status :: 5 - Production/Stable", ] +dependencies = [ + "click>=8.0.1", + "chardet>=5.1.0", + "numpy>=1.24.4; python_version < '3.12'", + "numpy>=1.26.1; python_version >= '3.12'", + "openpyxl>=3.1.0", + "pdfminer-six>=20240706", + "pypdf>=3.17,<4.0; python_version < '3.12'", + "pypdf>=4.0,<6.0; python_version >= '3.12'", + "pandas>=1.5.3; python_version < '3.10'", + "pandas>=2.2.2; python_version >= '3.10'", + "tabulate>=0.9.0", + "typing-extensions>=4.12.2; python_version < '3.11'", + "opencv-python-headless>=4.7.0.68", + "pypdfium2>=4", +] -[tool.poetry.urls] -Changelog = "https://github.com/py-pdf/pypdf_table_extraction/releases" +[project.urls] +Homepage = "https://github.com/camelot-dev/camelot" +Repository = "https://github.com/camelot-dev/camelot" +Documentation = "https://camelot-py.readthedocs.io/" +Changelog = "https://github.com/camelot-dev/camelot/releases" -[tool.poetry.dependencies] -python = "^3.8" -click = ">=8.0.1" -chardet = "^5.1.0" -numpy = [ - {version = "^1.24.4", python = ">=3.8,<3.12"}, - {version = ">=1.26.1", python = ">=3.12"} +[project.optional-dependencies] +plot = [ + "matplotlib>=3.7.5; python_version < '3.12'", + "matplotlib>=3.8.0; python_version >= '3.12'", ] -openpyxl = "^3.1.0" - -pdfminer-six = "^20240706" -pypdf = [ - {version = "^3.17", python = ">=3.8,<3.12"}, - {version = ">=4.0,<6.0", python = ">=3.12"} +ghostscript = [ + "ghostscript>=0.7", ] -pandas = [ - {version = "^1.5.3", python = ">=3.8,<3.10"}, - {version = "^2.2.2", python = ">=3.10"} +dev = [ + "Pygments>=2.10.0", + "black>=23.1.0", + "coverage[toml]>=6.2", + "flake8>=4.0.1", + "flake8-bandit>=2.1.2", + "flake8-bugbear>=21.9.2", + "flake8-rst-docstrings>=0.2.5", + "sphinx-book-theme>=1.0.1", + "isort>=5.10.1", + "mypy>=0.930", + "pep8-naming>=0.12.1", + "pre-commit>=2.16.0", + "pre-commit-hooks>=4.1.0", + "pytest>=6.2.5", + "pytest-mpl>=0.17.0", + "pyupgrade>=2.29.1", + "safety>=2.2.3", + "sphinx>=4.3.2", + "sphinx-autobuild>=2021.3.14", + "sphinx-click>=3.0.2", + "sphinx-copybutton>=0.5.0", + "sphinx-prompt>=1.5.0", + "typeguard>=2.13.3", + "xdoctest[colors]>=0.15.10", + "myst-parser>=2.0.0", ] -tabulate = "^0.9.0" -typing-extensions = {version = "^4.12.2", python = ">=3.8,<3.11"} - -[tool.poetry.dev-dependencies] -Pygments = ">=2.10.0" -black = ">=23.1.0" -coverage = {extras = ["toml"], version = ">=6.2"} -flake8 = ">=4.0.1" -flake8-bandit = ">=2.1.2" -flake8-bugbear = ">=21.9.2" -flake8-rst-docstrings = ">=0.2.5" -sphinx-book-theme = ">=1.0.1" -isort = ">=5.10.1" -mypy = ">=0.930" -pep8-naming = ">=0.12.1" -pre-commit = ">=2.16.0" -pre-commit-hooks = ">=4.1.0" -pytest = ">=6.2.5" -pytest-mpl = ">=0.17.0" -pyupgrade = ">=2.29.1" -safety = ">=2.2.3" -sphinx = ">=4.3.2" -sphinx-autobuild = ">=2021.3.14" -sphinx-click = ">=3.0.2" -sphinx-copybutton = ">=0.5.2" -sphinx-prompt = ">=1.5.0" -typeguard = ">=2.13.3" -xdoctest = {extras = ["colors"], version = ">=0.15.10"} -myst-parser = {version = ">=2.0.0"} - -[tool.poetry.scripts] +[project.scripts] camelot = "camelot.__main__:main" -pypdf_table_extraction = "pypdf_table_extraction.__main__:main" - -[tool.poetry.group.base.dependencies] -opencv-python-headless = "^4.7.0.68" -pypdfium2 = "^4" - -[tool.poetry.group.plot] -optional = true - -[tool.poetry.group.plot.dependencies] -matplotlib = [ - {version = "^3.7.5", python = ">=3.8,<3.12"}, - {version = "^3.8.0", python = ">=3.12"} -] - -[tool.poetry.group.ghostscript] -optional = true - -[tool.poetry.group.ghostscript.dependencies] -ghostscript = "^0.7" - -[tool.poetry_bumpversion.file."camelot/__version__.py"] [tool.coverage.paths] source = ["camelot", "*\\camelot", "*/site-packages"] @@ -155,5 +132,5 @@ disallow_any_generics = true # warn_return_any = true [build-system] -requires = ["poetry-core>=1.0.0"] -build-backend = "poetry.core.masonry.api" +requires = ["hatchling"] +build-backend = "hatchling.build" diff --git a/tests/test_rename.py b/tests/test_rename.py index 07e0acac..10c3ef0f 100644 --- a/tests/test_rename.py +++ b/tests/test_rename.py @@ -1,5 +1,4 @@ def test_imports(): - from camelot.backends.pdfium_backend import PdfiumBackend # noqa: F401 from camelot.backends.poppler_backend import PopplerBackend # noqa: F401 from camelot.handlers import Hybrid # noqa: F401