diff --git a/.travis.yml b/.travis.yml deleted file mode 100644 index 276e8de32..000000000 --- a/.travis.yml +++ /dev/null @@ -1,38 +0,0 @@ -os: linux -dist: xenial -language: node_js -node_js: - - "12" -install: - - npm install - - npm install jsdom - - npm install -g http-server - - npm install -g mocha - - npm install eslint - - npm install eslint-config-google - -stages: - - name: lintjs - - name: tests - -before_script: - - http-server -s & # start a Web server - -jobs: - include: - - stage: lintjs - name: "JS Code Style Check" - script: - - ./node_modules/.bin/eslint core/*.js --quiet - - ./node_modules/.bin/eslint components/**/*.js --quiet - - ./node_modules/.bin/eslint apps/heatmap/*.js --quiet - - ./node_modules/.bin/eslint apps/labeling/*.js --quiet - - ./node_modules/.bin/eslint apps/loader/*.js --quiet - - ./node_modules/.bin/eslint apps/model/*.js --quiet - - ./node_modules/.bin/eslint apps/segment/*.js --quiet - - ./node_modules/.bin/eslint apps/model/**/*.js --quiet - - ./node_modules/.bin/eslint apps/segment/**/*.js --quiet - - ./node_modules/.bin/eslint apps/viewer/*.js --quiet - - stage: tests - name: Unit Tests - script: mocha test --recursive --exit diff --git a/docs/Review.md b/docs/Review.md deleted file mode 100644 index c9463db1d..000000000 --- a/docs/Review.md +++ /dev/null @@ -1,32 +0,0 @@ -# Reviewing using caMicroscope -This guide aims to flatten the learning curve needed to perform review on slides quickly and efficiently. - -## Creating Annotations -It may be useful to add annotations to aid with review, or for any other reason. Using the pencil button will bring up a form, in which you can add a name (required) and any other freeform notes (optional). After the form is filled out, drawing on the slide will create that annotation automatically. Alternatively, you can group annotations by clicking on the pencil again, and having it enter infinite mode. In this mode, you can create multiple annotations with the same name and notes at once, but you must click save when finished. - -1. Enter the annotation name -2. Enter the annotation note -3. Changing the drawing options for the annotation -4. Drawing on the slide - -![Annotation Menu](img/AnnotMenu.png) - -## Customizing Your Annotations -Right click on the mouse to show up the annotation drawing options. In drawing options, there are 3 options (drawing option, color option, and clean option). -Different situations require different kinds of annotation, so caMicroscope natively supports give varieties of annotation shape. - -1. Freeform Polygon (default) -2. Point -3. Square -4. Rectangle -5. Grid Selection ("Brush as Grid") - -## Preset Annotation Labels -caMicroscope provides the preset labels to associate users to quickly create annotations on the slide. - -![Preset Annotation Label Menu](img/PresetLabelUse.png) - -### Customizing Preset Labels -To further increase efficiency for specific cases, we recommend changing the preset labels to match the kinds of review that is desired. Consider setting a keyboard shortcut to further decrease time menuing. - -![Preset Annotation Label Menu](img/PresetLabelEdit.png) diff --git a/docs/cloudUploadAPIs.md b/docs/cloudUploadAPIs.md deleted file mode 100644 index 483a4790e..000000000 --- a/docs/cloudUploadAPIs.md +++ /dev/null @@ -1,37 +0,0 @@ -# Cloud Upload APIs Guide - - -## Google Picker API -The picker API is to be used to allow user to select the file from their google drive. - -**Instructions:** - - Create a new project or go to your existing one at https://console.developers.google.com/ . Go to your project admin settings and note down your project number. (This will be your **`appId`**) - - Enable the picker api on your project. - - Go to the credentials page of your project, click on "Create Credentials > API Key" - - Note down your API key (This will be your **`developerKey`**)
-**Note**: Restrict your API key scopes to avoid unauthorised usage since this key will be public in the frontend. - - Go to "OAuth Consent Screen" and create your consent screen -- Select user type as External. -- Proceed to add consent screen. Add your test users email.
-**Note**: To allow users other than test users you need to verify your app with google first. - - Go to the credentials page of your project, click on "Create Credentials > OAuth Client ID" - - Select type as "Web Application". Then add `http://localhost:4010` to the list of authorised domains and redirect urls. Add other URLs if you have caMicroscope hosted on your own domain. - - Note down your ClientID. - - Now you have all your information needed for picker. Paste the details at `/apps/loader/chunked_loader.js` at caMicroscope in the shown place. -
![enter image description here](https://i.ibb.co/PhdTCyp/Screenshot-20201220-154455.jpg) - -Read more at https://developers.google.com/picker/docs/ - -## Google Drive API - -Google drive API is to be used on Slideloader backend server to allow the download of file selected by user from the picker api earlier. - -**Instructions:** -- Enable the Google Drive API on your project. -- Go to the credentials page of your project, click on "Create Credentials > OAuth Client ID" -- Select type as "Desktop Application" -- Download the JSON file for your OAuth 2.0 Client ID that you just created. -- There's a dummy file present at `/cloud-upload-apis/credentials/google-drive.json` in the **[Distro](https://github.com/camicroscope/Distro)** ; Replace that file with the JSON file you downloaded in the previous step.
-**Note**: Do not rename the `google-drive.json` file - -Read more at https://developers.google.com/drive \ No newline at end of file diff --git a/docs/file_structure.md b/docs/file_structure.md deleted file mode 100644 index 05e7f34f4..000000000 --- a/docs/file_structure.md +++ /dev/null @@ -1,46 +0,0 @@ -#camicroscope's file/directory structure - - . - ├── iconfont # Google Material icons - ├── css # the common style sheets for system - │ - ├── common # all common/utility *.js that will be used by the entire system go there - │ ├── ... - │ ├── path.js # common example file: a polyfill for Path2D - │ ├── simplify.js # common example file: simplify the polygon and line - │ └── ... - ├── core # camicroscope core directory. All files that are associated with the core go there - │ ├── Camic.js # camicscope class - │ ├── openseadragon # openSeadragon lib folder - │ ├── openseadragon-XXX.js # osd plugin file that provided by other developer - │ ├── ... - │ └── extension # all extension file that provided by us - │ ├── osd-labeling # labeling extension folder - │ ├── osd-heatmap-overlay.js # heatmap overlay .js file - │ └── ... - ├── components # UI components folder: all ui component files - │ ├── ... - │ ├── component_name # a component folder - │ │ ├── dependencies # the dependencies are used by a component - │ │ │ ├── ... - │ │ │ ├── dependency_file/folder # a dependency file - │ │ │ └── ... - │ │ ├── component_name.js # a component .js file - │ │ └── component_name.css # a component .css file - │ └── ... - ├── apps # all applications files go there. - │ ├── Viewer # a specific application. etc. Viewer - │ │ ├── xxx.js # Any file that associated with the `Viewer` application - │ │ ├── xxx.html # enter point page for viewer. - │ │ └── ... - │ ├── Heatmap # a specific application. etc. Heatmap - │ │ ├── xxx.js # Any file that associated with the `Heatmap` application - │ │ └── ... - ├── test # Test files - │ ├── ui # ui tests - │ ├── core # core tests - │ └── extension # extension tests - ├── demo # all demos code go there - │ ├── xxx_demo # a demo code in there file - │ └── ... - └── docs # jsdoc, api doc and other documentation go there. diff --git a/google_login.html b/google_login.html deleted file mode 100644 index cceccadfa..000000000 --- a/google_login.html +++ /dev/null @@ -1,82 +0,0 @@ - - - -
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format('woff'), - url(MaterialIcons-Regular.ttf) format('truetype'); -} - -.material-icons { - font-family: 'Material Icons'; - font-weight: normal; - font-style: normal; - font-size: 24px; /* Preferred icon size */ - display: inline-block; - line-height: 1; - text-transform: none; - letter-spacing: normal; - word-wrap: normal; - white-space: nowrap; - direction: ltr; - - /* Support for all WebKit browsers. */ - -webkit-font-smoothing: antialiased; - /* Support for Safari and Chrome. */ - text-rendering: optimizeLegibility; - - /* Support for Firefox. */ - -moz-osx-font-smoothing: grayscale; - - /* Support for IE. */ - font-feature-settings: 'liga'; - - vertical-align:bottom; -} - -.material-icons.md-12 { - font-size: 1.2rem; -} -.material-icons.md-11 { - font-size: 1.1rem; -} -.material-icons.md-13 { - font-size: 1.3rem; -} -.material-icons.md-15 { - font-size: 1.5rem; -} -.material-icons.md-18 { - font-size: 1.8rem; -} -.material-icons.md-24 { - font-size: 2.4rem; -} - -.material-icons.md-36 { - font-size: 3.6rem; -} - -.material-icons.md-48 { - font-size: 4.8rem; -} diff --git a/jsdoc_conf.json b/jsdoc_conf.json deleted file mode 100644 index a58b076b2..000000000 --- a/jsdoc_conf.json +++ /dev/null @@ -1,5 +0,0 @@ -{ - "source": { - "include": [ "core/CaMic.js", "core/DrawAnnots.js", "core/Layer.js", "core/RenderAnnots.js", "core/Store.js" ] - } -} diff --git a/login.html b/login.html deleted file mode 100644 index d221ad3de..000000000 --- a/login.html +++ /dev/null @@ -1,77 +0,0 @@ - - - -
-Sign out - - -