Dockerfile

############################################################
# Dockerfile to build Oss-lite container images
# Based on Ubuntu
############################################################
FROM ubuntu:14.04

MAINTAINER Sapoonjyoti DuttaDuwarah
### update
RUN apt-get -q -y update
RUN apt-get -q -y upgrade
RUN apt-get -q -y dist-upgrade
RUN apt-get -q -y install openssh-server
RUN apt-get -q -y install curl

RUN apt-get -q -y install build-essential \
			  python \
			  python-dev \
			  python-distribute \
			  python-pip \
			  git \
			  openslide-tools \
			  python-openslide

RUN pip install flask \
		gunicorn

### prereqs for openslide
RUN apt-get -q -y install zlib1g-dev libpng12-dev libjpeg-dev libtiff5-dev libgdk-pixbuf2.0-dev libxml2-dev libsqlite3-dev libcairo2-dev libglib2.0-dev

### need build tools for building openslide and later iipsrv
RUN apt-get -q -y install git autoconf automake make libtool pkg-config cmake

RUN mkdir /root/src

WORKDIR /root/src
#Libraries that are needed for openslide
RUN curl -O -J -L http://downloads.sourceforge.net/lcms/lcms2-2.7.tar.gz && \
tar -xzvf lcms2-2.7.tar.gz && \
cd lcms2-2.7 && ./configure && \
make -j4 && make install && \
cd .. && rm -rf lcms2-2.7*

RUN curl -O -J -L http://downloads.sourceforge.net/libpng/libpng-1.6.22.tar.xz && \
tar -xvf libpng-1.6.22.tar.xz && \
cd libpng-1.6.22 && ./configure && \
make -j4 && make install && \
cd .. && rm -rf libpng-1.6.22*

RUN curl -O -J -L http://download.osgeo.org/libtiff/tiff-4.0.6.tar.gz && \
tar -xzvf tiff-4.0.6.tar.gz && \
cd tiff-4.0.6 && ./configure && \
make -j4 && make install && \
cd .. && rm -rf tiff-4.0.6*

#RUN apt-get install cmake3
RUN curl -O -J -L http://downloads.sourceforge.net/openjpeg.mirror/openjpeg-2.1.0.tar.gz && \
tar -xzvf openjpeg-2.1.0.tar.gz && \
cd openjpeg-2.1.0 && mkdir build && \
cd build && cmake ../ && \
make -j4 && make install && \
cd ../.. && rm -rf openjpeg-2.1.0*


### Openslide
WORKDIR /root/src
## get my fork from openslide source cdoe
RUN git clone https://bitbucket.org/tcpan/openslide.git

## build openslide
WORKDIR /root/src/openslide
RUN git checkout tags/v0.3.1
RUN autoreconf -i
#RUN ./configure --enable-static --enable-shared=no
# may need to set OPENJPEG_CFLAGS='-I/usr/local/include' and OPENJPEG_LIBS='-L/usr/local/lib -lopenjp2'
# and the corresponding TIFF flags and libs to where bigtiff lib is installed.
RUN ./configure
RUN make
RUN make install

WORKDIR /root/src

RUN git clone --recursive https://github.com/camicroscope/oss-lite.git


WORKDIR /root/src/oss-lite

CMD ["sh", "run.sh"]