diff --git a/.github/workflows/checks.yaml b/.github/workflows/checks.yaml index 7466af9..ba000a7 100644 --- a/.github/workflows/checks.yaml +++ b/.github/workflows/checks.yaml @@ -33,11 +33,11 @@ jobs: - name: Install DynamoDB dependencies if: ${{ env.GENE_NORM_DB_URL == 'http://localhost:8000' }} - run: python3 -m pip install ".[etl,test]" + run: python3 -m pip install ".[etl,tests]" - name: Install PG dependencies if: ${{ env.GENE_NORM_DB_URL != 'http://localhost:8000' }} - run: python3 -m pip install ".[pg,etl,test]" + run: python3 -m pip install ".[pg,etl,tests]" - name: Build local DynamoDB if: ${{ env.GENE_NORM_DB_URL == 'http://localhost:8000' }} diff --git a/docs/source/contributing.rst b/docs/source/contributing.rst index af533cb..e053105 100644 --- a/docs/source/contributing.rst +++ b/docs/source/contributing.rst @@ -27,7 +27,7 @@ Alternatively, use a virtual environment and install all dependency groups: :: python3 -m venv venv source venv/bin/activate - python3 -m pip install -e ".[pg,etl,test,dev,docs]" + python3 -m pip install -e ".[pg,etl,tests,dev,docs]" We use `pre-commit `_ to run conformance tests before commits. This provides checks for: diff --git a/docs/source/install.rst b/docs/source/install.rst index 6307154..1d9867b 100644 --- a/docs/source/install.rst +++ b/docs/source/install.rst @@ -12,7 +12,7 @@ The Gene Normalizer can be installed from `PyPI =6.0", "pytest-cov", "mock", "httpx", "deepdiff"] +tests = ["pytest>=6.0", "pytest-cov", "mock", "httpx", "deepdiff"] dev = ["pre-commit>=3.7.1", "ruff==0.5.0"] docs = [ "sphinx==6.1.3",