From 32b808f9fe89b4e7c9a802bd1662b46815bde6c2 Mon Sep 17 00:00:00 2001 From: Kori Kuzma Date: Thu, 2 Jan 2025 15:29:44 -0500 Subject: [PATCH] ruff --- .../gnomad_vcf_to_protein_variation.py | 10 +++++----- src/variation/main.py | 18 +++++++++--------- src/variation/normalize.py | 2 +- src/variation/to_copy_number_variation.py | 8 ++++---- src/variation/to_vrs.py | 2 +- 5 files changed, 20 insertions(+), 20 deletions(-) diff --git a/src/variation/gnomad_vcf_to_protein_variation.py b/src/variation/gnomad_vcf_to_protein_variation.py index 27bfcd1b..7a9570ed 100644 --- a/src/variation/gnomad_vcf_to_protein_variation.py +++ b/src/variation/gnomad_vcf_to_protein_variation.py @@ -457,7 +457,7 @@ async def gnomad_vcf_to_protein(self, vcf_query: str) -> GnomadVcfToProteinServi warnings=warnings, service_meta_=ServiceMeta( version=__version__, - response_datetime=datetime.datetime.now(tz=datetime.timezone.utc), + response_datetime=datetime.datetime.now(tz=datetime.UTC), ), ) @@ -497,7 +497,7 @@ async def gnomad_vcf_to_protein(self, vcf_query: str) -> GnomadVcfToProteinServi warnings=warnings, service_meta_=ServiceMeta( version=__version__, - response_datetime=datetime.datetime.now(tz=datetime.timezone.utc), + response_datetime=datetime.datetime.now(tz=datetime.UTC), ), ) @@ -516,7 +516,7 @@ async def gnomad_vcf_to_protein(self, vcf_query: str) -> GnomadVcfToProteinServi warnings=warnings, service_meta_=ServiceMeta( version=__version__, - response_datetime=datetime.datetime.now(tz=datetime.timezone.utc), + response_datetime=datetime.datetime.now(tz=datetime.UTC), ), ) @@ -539,7 +539,7 @@ async def gnomad_vcf_to_protein(self, vcf_query: str) -> GnomadVcfToProteinServi warnings=warnings, service_meta_=ServiceMeta( version=__version__, - response_datetime=datetime.datetime.now(tz=datetime.timezone.utc), + response_datetime=datetime.datetime.now(tz=datetime.UTC), ), ) @@ -590,6 +590,6 @@ async def gnomad_vcf_to_protein(self, vcf_query: str) -> GnomadVcfToProteinServi warnings=warnings, service_meta_=ServiceMeta( version=__version__, - response_datetime=datetime.datetime.now(tz=datetime.timezone.utc), + response_datetime=datetime.datetime.now(tz=datetime.UTC), ), ) diff --git a/src/variation/main.py b/src/variation/main.py index 006bb0a2..708f303f 100644 --- a/src/variation/main.py +++ b/src/variation/main.py @@ -235,7 +235,7 @@ def translate_identifier( aliases=aliases, service_meta_=ServiceMeta( version=__version__, - response_datetime=datetime.datetime.now(tz=datetime.timezone.utc), + response_datetime=datetime.datetime.now(tz=datetime.UTC), ), ) @@ -315,7 +315,7 @@ def vrs_python_translate_from( variation=vrs_variation, service_meta_=ServiceMeta( version=__version__, - response_datetime=datetime.datetime.now(tz=datetime.timezone.utc), + response_datetime=datetime.datetime.now(tz=datetime.UTC), ), vrs_python_meta_=VrsPythonMeta( version=pkg_resources.get_distribution("ga4gh.vrs").version @@ -423,7 +423,7 @@ async def vrs_python_translate_to(request_body: TranslateToQuery) -> TranslateTo variations=variations, service_meta_=ServiceMeta( version=__version__, - response_datetime=datetime.datetime.now(tz=datetime.timezone.utc), + response_datetime=datetime.datetime.now(tz=datetime.UTC), ), vrs_python_meta_=VrsPythonMeta( version=pkg_resources.get_distribution("ga4gh.vrs").version @@ -481,7 +481,7 @@ async def vrs_python_to_hgvs(request_body: TranslateToHGVSQuery) -> TranslateToS variations=variations, service_meta_=ServiceMeta( version=__version__, - response_datetime=datetime.datetime.now(tz=datetime.timezone.utc), + response_datetime=datetime.datetime.now(tz=datetime.UTC), ), vrs_python_meta_=VrsPythonMeta( version=pkg_resources.get_distribution("ga4gh.vrs").version @@ -579,7 +579,7 @@ def parsed_to_cn_var(request_body: ParsedToCnVarQuery) -> ParsedToCnVarService: warnings=["Unhandled exception. See logs for more details."], service_meta_=ServiceMeta( version=__version__, - response_datetime=datetime.datetime.now(tz=datetime.timezone.utc), + response_datetime=datetime.datetime.now(tz=datetime.UTC), ), ) @@ -612,7 +612,7 @@ def parsed_to_cx_var(request_body: ParsedToCxVarQuery) -> ParsedToCxVarService: warnings=["Unhandled exception. See logs for more details."], service_meta_=ServiceMeta( version=__version__, - response_datetime=datetime.datetime.now(tz=datetime.timezone.utc), + response_datetime=datetime.datetime.now(tz=datetime.UTC), ), ) @@ -705,7 +705,7 @@ async def p_to_c( warnings=[w] if w else [], service_meta=ServiceMeta( version=__version__, - response_datetime=datetime.datetime.now(tz=datetime.timezone.utc), + response_datetime=datetime.datetime.now(tz=datetime.UTC), ), ) @@ -765,7 +765,7 @@ async def c_to_g( warnings=[w] if w else [], service_meta=ServiceMeta( version=__version__, - response_datetime=datetime.datetime.now(tz=datetime.timezone.utc), + response_datetime=datetime.datetime.now(tz=datetime.UTC), ), ) @@ -819,6 +819,6 @@ async def p_to_g( warnings=[w] if w else [], service_meta=ServiceMeta( version=__version__, - response_datetime=datetime.datetime.now(tz=datetime.timezone.utc), + response_datetime=datetime.datetime.now(tz=datetime.UTC), ), ) diff --git a/src/variation/normalize.py b/src/variation/normalize.py index b7759984..657dbdae 100644 --- a/src/variation/normalize.py +++ b/src/variation/normalize.py @@ -200,7 +200,7 @@ async def normalize( "warnings": warnings, "service_meta_": ServiceMeta( version=__version__, - response_datetime=datetime.datetime.now(tz=datetime.timezone.utc), + response_datetime=datetime.datetime.now(tz=datetime.UTC), ), } diff --git a/src/variation/to_copy_number_variation.py b/src/variation/to_copy_number_variation.py index 584e8ec4..433f9654 100644 --- a/src/variation/to_copy_number_variation.py +++ b/src/variation/to_copy_number_variation.py @@ -232,7 +232,7 @@ async def hgvs_to_copy_number_count( warnings=warnings, service_meta_=ServiceMeta( version=__version__, - response_datetime=datetime.datetime.now(tz=datetime.timezone.utc), + response_datetime=datetime.datetime.now(tz=datetime.UTC), ), copy_number_count=cn_var, ) @@ -265,7 +265,7 @@ async def hgvs_to_copy_number_change( warnings=warnings, service_meta_=ServiceMeta( version=__version__, - response_datetime=datetime.datetime.now(tz=datetime.timezone.utc), + response_datetime=datetime.datetime.now(tz=datetime.UTC), ), copy_number_change=cx_var, ) @@ -628,7 +628,7 @@ def parsed_to_copy_number( "warnings": warnings, "service_meta_": ServiceMeta( version=__version__, - response_datetime=datetime.datetime.now(tz=datetime.timezone.utc), + response_datetime=datetime.datetime.now(tz=datetime.UTC), ), } @@ -738,6 +738,6 @@ def amplification_to_cx_var( warnings=warnings, service_meta_=ServiceMeta( version=__version__, - response_datetime=datetime.datetime.now(tz=datetime.timezone.utc), + response_datetime=datetime.datetime.now(tz=datetime.UTC), ), ) diff --git a/src/variation/to_vrs.py b/src/variation/to_vrs.py index bfed644b..7637876f 100644 --- a/src/variation/to_vrs.py +++ b/src/variation/to_vrs.py @@ -128,7 +128,7 @@ async def to_vrs(self, q: str) -> ToVRSService: "variations": variations, "service_meta_": ServiceMeta( version=__version__, - response_datetime=datetime.datetime.now(tz=datetime.timezone.utc), + response_datetime=datetime.datetime.now(tz=datetime.UTC), ), "warnings": warnings, }