move dependencies from makefile to environment.yml; update qiime2 release

Author: colinvwood

Makefile

@@ -12,11 +12,9 @@ test: all
 	py.test
 
 REPO = jeffkimbrel/qSIP2
-HASH = fee266bb14836f7a6c45ef9ef11d451999936a3a
+HASH = b867c96aa7b72b72f47942f11dbcd18319cae8bc
 install: all
 	pip install .
-	conda install --yes r-devtools r-svglite r-gt rpy2 -c r
-	Rscript -e 'install.packages("S7", repos="https://cloud.r-project.org")'
 	Rscript -e 'devtools::install_github("$(REPO)", ref="$(HASH)")'
 
 dev: all

README.md

@@ -31,7 +31,7 @@ If you're in a conda environment, deactivate it by running `conda deactivate`.
 Then, run:
 
 ```shell
-conda env create -n q2-qsip2-dev --file ./environments/q2-qsip2-qiime2-amplicon-2024.5.yml
+conda env create -n q2-qsip2-dev --file ./environments/q2-qsip2-qiime2-amplicon-2025.4.yml
 ```
 
 After this completes, activate the new environment you created by running:

environments/q2-qsip2-qiime2-amplicon-2024.5.yml

@@ -0,0 +1,13 @@
+name: q2-qsip2-qiime2-amplicon-2025.4
+channels:
+    - https://packages.qiime2.org/qiime2/2025.4/amplicon/passed
+    - conda-forge
+    - bioconda
+dependencies:
+    - qiime2-amplicon
+    - r-devtools
+    - r-svglite
+    - r-gt
+    - r-s7
+    - rpy2
+    - pip