From 56ee2c44be46ce279874494abce20b23721b497f Mon Sep 17 00:00:00 2001
From: Lucrezia Patruno <l.patruno@caompus.unimib.it>
Date: Mon, 13 Nov 2023 11:04:29 +0000
Subject: [PATCH] Minor fix

---
 README.md       | 5 ++---
 _pkgdown.yml    | 4 +++-
 docs/index.html | 2 +-
 3 files changed, 6 insertions(+), 5 deletions(-)

diff --git a/README.md b/README.md
index 86616e4..f1e4fbd 100644
--- a/README.md
+++ b/README.md
@@ -27,9 +27,8 @@ If you use `Rcongas`, please cite these two papers:
 
 - *A Bayesian method to cluster single-cell RNA sequencing data using copy number alterations*. Salvatore Milite, Riccardo Bergamin, Lucrezia Patruno, Nicola Calonaci, Giulio Caravagna. [Bioinformatics](https://doi.org/10.1093/bioinformatics/btac143) 2022.
 
-- *A Bayesian method to infer copy number clones from single-cell RNA and ATAC sequencing.* Lucrezia Patruno1, Salvatore Milite, Riccardo Bergamin Nicola Calonaci, Alberto D’Onofrio, Fabio Anselmi, Marco Antoniotti, Alex Graudenzi, Giulio Caravagna.
-    [biorXiv
-    preprint](https://www.biorxiv.org/content/10.1101/2023.04.01.535197v1),
+- *A Bayesian method to infer copy number clones from single-cell RNA and ATAC sequencing.* Lucrezia Patruno, Salvatore Milite, Riccardo Bergamin Nicola Calonaci, Alberto D’Onofrio, Fabio Anselmi, Marco Antoniotti, Alex Graudenzi, Giulio Caravagna.
+    [PLOScompbio](https://doi.org/10.1371/journal.pcbi.1011557),
     2023
 
 
diff --git a/_pkgdown.yml b/_pkgdown.yml
index 99e6381..212bfbb 100644
--- a/_pkgdown.yml
+++ b/_pkgdown.yml
@@ -2,7 +2,7 @@ destination: docs
 
 template:
   params:
-    footer: S. Milite, R. Bergamin and G. Caravagna.
+    footer: S. Milite, L. Patruno, R. Bergamin and G. Caravagna.
 url:
   caravagnalab.github.io/Rcongas
 
@@ -16,6 +16,8 @@ repo:
 authors:
   Salvatore Milite:
     href: https://www.caravagnalab.org
+  Lucrezia Patruno:
+    href: https://www.caravagnalab.org
   Riccardo Bergamin:
     href: https://www.caravagnalab.org
   Giulio Caravagna:
diff --git a/docs/index.html b/docs/index.html
index 37477c1..0db34d6 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -111,7 +111,7 @@ <h4 id="citation">Citation<a class="anchor" aria-label="anchor" href="#citation"
 <p>If you use <code>Rcongas</code>, please cite these two papers:</p>
 <ul>
 <li><p><em>A Bayesian method to cluster single-cell RNA sequencing data using copy number alterations</em>. Salvatore Milite, Riccardo Bergamin, Lucrezia Patruno, Nicola Calonaci, Giulio Caravagna. <a href="https://doi.org/10.1093/bioinformatics/btac143" class="external-link">Bioinformatics</a> 2022.</p></li>
-<li><p><em>A Bayesian method to infer copy number clones from single-cell RNA and ATAC sequencing.</em> Lucrezia Patruno1, Salvatore Milite, Riccardo Bergamin Nicola Calonaci, Alberto D’Onofrio, Fabio Anselmi, Marco Antoniotti, Alex Graudenzi, Giulio Caravagna. <a href="https://www.biorxiv.org/content/10.1101/2023.04.01.535197v1" class="external-link">biorXiv preprint</a>, 2023</p></li>
+<li><p><em>A Bayesian method to infer copy number clones from single-cell RNA and ATAC sequencing.</em> Lucrezia Patruno, Salvatore Milite, Riccardo Bergamin Nicola Calonaci, Alberto D’Onofrio, Fabio Anselmi, Marco Antoniotti, Alex Graudenzi, Giulio Caravagna. <a href="https://doi.org/10.1371/journal.pcbi.1011557" class="external-link">PLOScompbio</a>, 2023</p></li>
 </ul>
 </div>
 <div class="section level4">