Fix example for SmoothKNN

carmonalab · Nov 6, 2023 · 673f41f · 673f41f
1 parent b381b07
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: UCell
 Type: Package
 Title: Rank-based signature enrichment analysis for single-cell data
-Version: 2.7.1
+Version: 2.7.2
 Authors@R: c(
   person('Massimo', 'Andreatta', 
      email = '[email protected]',

diff --git a/R/SmoothKNN.R b/R/SmoothKNN.R
@@ -44,7 +44,7 @@
 #' # Calculate UCell scores
 #' obj <- AddModuleScore_UCell(obj,features = gene.sets, name=NULL)
 #' # Run PCA
-#' obj <- FindVariableFeatures(obj) |> ScaleData() |> RunPCA()
+#' obj <- FindVariableFeatures(obj) |> NormalizeData() |> ScaleData() |> RunPCA()
 #' # Smooth signatures
 #' obj <- SmoothKNN(obj, reduction="pca", signature.names=names(gene.sets))
 #' head(obj[[]])

diff --git a/man/SmoothKNN.Rd b/man/SmoothKNN.Rd