New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

using scGate with SingleCellExperiment #4

Open

Delphine44 opened this issue Jan 3, 2024 · 1 comment

Delphine44 commented Jan 3, 2024

Hello,
It seems that scGate is only available to analyse Seurat objects. Is there a way to adapt it for SingleCellExperiment?

Member

mass-a commented Jan 18, 2024

Hello Delphine,

at the moment scGate only works on Seurat objects. Perhaps you can try one of the conversion tools available to move between the two formats, see e.g. https://satijalab.org/seurat/archive/v4.3/conversion_vignette.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment