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Some questions about observed dataset #1

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Licko0909 opened this issue Mar 18, 2020 · 0 comments
Open

Some questions about observed dataset #1

Licko0909 opened this issue Mar 18, 2020 · 0 comments

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@Licko0909
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Licko0909 commented Mar 18, 2020

Dear cboix

Hello, I recently to your paper: "doi: https://doi.org/10.1101/810291," this is a very good job!
I mentioned in the download paper observed data (https://epigenome.wustl.edu/epimap/data/observed/), but I have some questions want to consult you.

  1. There are only 3,026 bigWig files on the site, not 3,030 as mentioned in the paper.And when I analyzed it,
    1994 chips-seq experiments for 33 histone marks, 701 experiments for DNA accessibility (dnase-seq, atac-seq), 335 experiments for chromatin-associated general factor. However, there were only 697 experiments for DNA accessibility, not 701

  2. I want to know how to get the 2850 observed files mentioned in the paper.I will be after 3026 file downloads, screen out in supplement form "Flagged samples" mentioned 138 files, 2887, is still more than 37 files.

I am looking forward to your reply!Thank you very much!

Licko, best wishes

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