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CONTENT
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List of files in the optool distribution
========================================
CONTENT This file
INSTALL Brief installation instructions (also in UserGuide)
LICENSE License information
Makefile Makefile to aid compilation and installation
README.org Short introduction, source for githup site
UserGuide.org The User guide, an Emacs Org-mode file
UserGuide.pdf PDF version of UserGuide.org
code4reading Directory with code snippets to read optool output
codemeta.jason Matadata for optool
lnk_data Directory with refractive index data
maint Directory with scripts aiding maintenance
optool.f90 Main code file for optool
optool_guts.f90 Code that does the grunt work for computing opacities
optool_fractal.f90 Code implementing modified mean field theory
optool_geofractal.f90 Code computing geometric aggregate cross sections
optool_manual.f90 The Manual extracted from UserGuide.org, baked into f90
optool_refind.f90 Refractive index data as fortran code
optool Binary program, only present after running "make"
optool.py Python module for working with optool
setup.py Code for python module installation
optool2tex Perl program to turn optool command into LaTeX text
optool-complete Code for shell-completion of switches and arguments
optool.bib BibTeX file with all relevant references
In directory maint
==================
RELEASE Description of how to produce a release
all_k.pdf Plot of k values, made with plotall.py, used in manual
bake_manual.pl Perl program to turn UserGuide.org into fortran code
bake_manual.el Emacs Lisp code to extract ASCII from UserGuide.org
ingestlnk.pl Perl program to produce optool_refind.f90
ref_ind.template Template needed by ingestlnk.pl
inspect.png Plots created with plot() method, for UserGuide.pdf
notes.org Notes about stuff I still might want to work on
plotall.py Python code to plot all refractive index data
run_examples Script running all examples from the manual
selftest.pl Perl program to run a bunch of tests with optool
In directory code4reading
=========================
Makefile Makefile to compile the fortran snippets
README Information about how to use the snippets
readascii.f90 Fortran program to read ASCII output
readascii.py Python program to read ASCII output
readfits.f90 Fortran program to read FITS output
readfits.py Python program to read FITS output
In directory lnk_data
=====================
lnk-help.txt The help screen shown by optool -c
retired Directory with retired datasets
The refractive index datasets in the lnk_data directory
-------------------------------------------------------
astrosil-Draine2003.lnk astronomical silicate
c-gra-Draine2003.lnk graphite (crystalline)
c-nano-Mutschke2004.lnk nano-Diamonds (crystalline)
c-org-Henning1996.lnk organic material (amorphous)
c-p-Preibisch1993.lnk carbon (amorphous)
c-z-Zubko1996.lnk carbon (amorphous)
ch3oh-a-Gerakines2020.lnk methanol ice (amorphous)
ch3oh-c-Gerakines2020.lnk methanol ice (crystalline)
ch4-a-Gerakines2020.lnk methane ice (amorphous)
ch4-c-Gerakines2020.lnk methane ice (crystalline)
co-a-Palumbo2006.lnk CO ice (amorphous)
co2-a-Gerakines2020.lnk CO2 ice (amorphous)
co2-c-Gerakines2020.lnk CO2 ice (crystalline)
co2-w-Warren1986.lnk CO2 ice (amorphous/crystalline)
cor-c-Koike1995.lnk corundum (crystalline)
fe-c-Henning1996.lnk iron (metal)
fes-Henning1996.lnk iron sulfide (metal)
h2o-a-Hudgins1993.lnk water ice (amorphous)
h2o-w-Warren2008.lnk water ice (crystalline)
nh3-m-Martonchik1983.lnk ammonia ice (crystalline)
ol-c-mg00-Fabian2001.lnk 0% Mg olivine (crystalline)
ol-c-mg95-Fabian2001.lnk 95% Mg olivine (crystalline)
ol-c-mg100-Suto2006.lnk 100% Mg olivine (crystalline)
ol-mg40-Dorschner1995.lnk 40% Mg olivine (amorphous)
ol-mg50-Dorschner1995.lnk 50% Mg olivine (amorphous)
pyr-c-mg96-Jaeger1998.lnk 96% Mg pyroxene (crystalline)
pyr-mg40-Dorschner1995.lnk 40% Mg pyroxene (amorphous)
pyr-mg50-Dorschner1995.lnk 50% Mg pyroxene (amorphous)
pyr-mg60-Dorschner1995.lnk 60% Mg pyroxene (amorphous)
pyr-mg70-Dorschner1995.lnk 70% Mg pyroxene (amorphous)
pyr-mg80-Dorschner1995.lnk 80% Mg pyroxene (amorphous)
pyr-mg95-Dorschner1995.lnk 95% Mg pyroxene (amorphous)
pyr-mg100-Dorschner1995.lnk 100% Mg pyroxene (amorphous)
sic-Draine1993.lnk silicon carbide (crystalline)
sio2-Kitamura2007.lnk quartz (amorphous)