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<html>
<head>
<!-- <link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/4.0.0/css/bootstrap.min.css" integrity="sha384-Gn5384xqQ1aoWXA+058RXPxPg6fy4IWvTNh0E263XmFcJlSAwiGgFAW/dAiS6JXm" crossorigin="anonymous"> -->
<style>
body
{
font-family: "Helvetica Neue";
}
th, td {
/* border: thin solid black; */
border-top: 1px solid #dee2e6;
padding: .25rem .55rem;
min-width: 75px;
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table {
table-layout: fixed;
border-collapse: collapse;
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.test_descriptor.header_label {
color: orange;
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.test_claims.header_label {
color: red;
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.validation_condition.header_label {
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background-color: #f4f4f4;
padding: 0.5rem 1.6rem;
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<body>
<div class="header">
<div class="options">
<button id="toggle_expanded_cells">Toggle cell expansion</button>
<button id="toggle_hidden_columns">Toggle hidden columns</button>
<div id="progress"></div>
</div>
<h3>SARS-CoV-2 Test EUAs data table</h3>
</div>
<br />
<br />
<br />
<br />
<br />
<h3 id="loading_status">Loading data table...</h3>
<table id="data_table" class="table">
<thead></thead>
<tbody></tbody>
</table>
<br />
<br />
<br />
<br />
<br />
<div class="foot_notes">
<p>
<sup>*</sup> Latest EUA or IFU provides a link to the latest FDA document. The data in this table may be parsed from an earlier version of these EUAs. Additionally not all EUAs are updated on the same document ID; for example the CDC's EUA was originially published on <a href="https://www.fda.gov/media/134922/download">fda.gov/media/134922/download</a> as linked to here. This document was updated 5 times before being published and further updated on the FDA website under <a href="https://www.fda.gov/media/139743/download">a different link</a>.
</p>
</div>
<script>
const merged_data = [{"test_id": "cdc__cdc 2019-novel coronavirus (2019-ncov) real-time rt-pcr diagnostic panel", "FDA_EUAs_list": {"first_issued_date": "2020-02-04", "developer_name": "CDC", "test_name": "CDC 2019-Novel Coronavirus (2019-nCoV) Real-Time RT-PCR Diagnostic Panel", "test_technology": "Molecular Real-time RT-PCR, Pooling", "url_to_IFU_or_EUA": "https://www.fda.gov/media/134922/download"}, "anot8_org": {"file_id": "134", "permalink": "https://anot8.org/1772.2/134"}, "fda_reference_panel_lod_data": {"different_developer_name": "Centers for Disease Control and Prevention (CDC)", "different_test_name": "CDC 2019-nCoV Real-Time RT-PCR Diagnostic Panel (CDC)", "results_status": "Results in Table 2A", "lod": 18000, "sample_media_type": "Swabs in Transport Media"}, "self_declared_EUA_data": {"supported_specimen_types": {"annotations": [{"id": 9, "text": "upper and lower respiratory specimens (such as nasopharyngeal or oropharyngeal swabs, sputum, lower respiratory tract aspirates, bronchoalveolar lavage, and nasopharyngeal wash/aspirate or nasal aspirate)", "labels": ["Supported specimen types"], "comment": "", "anot8_org_file_id": "134"}], "parsed": ""}, "target_genes": {"annotations": [{"id": 4, "text": "N", "labels": ["Viral gene(s) targetted"], "comment": "", "anot8_org_file_id": "134"}], "parsed": ""}, "controls__human_gene_target": {"annotations": [{"id": 10, "text": "RNase P (RP)", "labels": ["Controls/Internal/Human gene target"], "comment": "", "anot8_org_file_id": "134"}], "parsed": ""}, "primer_probe_sequences": {"annotations": [{"id": 11, "text": "", "labels": ["Primers and probes/Sequences", "Meta/Not specified", "Primers and probes/Sequences/Not specified"], "comment": "Not present in the EUA but present on the CDC website: https://www.cdc.gov/coronavirus/2019-ncov/lab/rt-pcr-panel-primer-probes.html", "anot8_org_file_id": "134"}], "parsed": "Not specified"}, "lod_value": {"annotations": [{"id": 6, "text": "1", "labels": ["Limit of Detection (LOD)/Value"], "comment": "", "anot8_org_file_id": "134"}, {"id": 5, "text": "3.162", "labels": ["Limit of Detection (LOD)/Value"], "comment": "", "anot8_org_file_id": "134"}], "min": 1.0, "max": 3.162, "parsed": "1.0 ↔ 3.162"}, "lod_units": {"annotations": [{"id": 3, "text": "genome copies / μL", "labels": ["Limit of Detection (LOD)/Units"], "comment": "", "anot8_org_file_id": "134"}], "parsed": "genome copies / μL"}, "lod_minimum_replicates": {"annotations": [{"id": 8, "text": "20", "labels": ["Limit of Detection (LOD)/Minimum Replicates"], "comment": "", "anot8_org_file_id": "134"}], "parsed": ""}, "synthetic_specimen__viral_material": {"annotations": [{"id": 0, "text": "characterized stocks of in vitro transcribed full length RNA (N gene; GenBank accession: MN908947.2)", "labels": ["Specimen/Synthetic Specimen/Virus", "Specimen/Synthetic Specimen/Virus/Type/Naked RNA"], "comment": "Why does it say \"in vitro transcribed full length RNA\" and then say \"N gene\"?", "anot8_org_file_id": "134"}], "parsed": "Naked RNA"}, "synthetic_specimen__clinical_matrix": {"annotations": [{"id": 1, "text": "suspension of human A549 cells and viral transport medium (VTM) to mimic clinical specimen", "labels": ["Specimen/Synthetic Specimen/Clinical matrix"], "comment": "", "anot8_org_file_id": "134"}], "parsed": ""}}, "amp_survey": {"aug": {"primary_rank": 8, "primary_lab_percentage": 4, "id": 0, "anot8_org_file_id": "1162"}}}, {"test_id": "wadsworth center, new york state department of health's (cdc)__new york sars-cov-2 real-time reverse transcriptase (rt)-pcr diagnostic panel", "FDA_EUAs_list": {"first_issued_date": "2020-02-29", "developer_name": "Wadsworth Center, New York State Department of Health's (CDC)", "test_name": "New York SARS-CoV-2 Real-time Reverse Transcriptase (RT)-PCR Diagnostic Panel", "test_technology": "Molecular Real-time RT-PCR", "url_to_IFU_or_EUA": "https://www.fda.gov/media/135847/download"}, "anot8_org": {"file_id": "77", "permalink": "https://anot8.org/1772.2/77"}, "fda_reference_panel_lod_data": {"different_developer_name": "Wadsworth Center, New York State Department of Public Health", "different_test_name": false, "results_status": "Under interactive review", "lod": "", "sample_media_type": ""}, "self_declared_EUA_data": {"supported_specimen_types": {"annotations": [{"id": 10, "text": "nasopharyngeal/oropharyngeal swabs and sputa", "labels": ["Supported specimen types"], "comment": "", "anot8_org_file_id": "77"}], "parsed": ""}, "target_genes": {"annotations": [{"id": 9, "text": "N, N", "labels": ["Viral gene(s) targetted"], "comment": "", "anot8_org_file_id": "77"}], "parsed": ""}, "controls__human_gene_target": {"annotations": [{"id": 12, "text": "RNase P (RP)", "labels": ["Controls/Internal/Human gene target"], "comment": "", "anot8_org_file_id": "77"}], "parsed": ""}, "primer_probe_sequences": {"annotations": [{"id": 16, "text": "", "labels": ["Primers and probes/Sequences", "Primers and probes/Sequences/Reference available"], "comment": "", "anot8_org_file_id": "77"}], "parsed": "Reference available"}, "lod_value": {"annotations": [{"id": 1, "text": "25", "labels": ["Limit of Detection (LOD)/Value"], "comment": "Using bioMerieux NucliSENS easyMAG and EMAG extraction.", "anot8_org_file_id": "77"}, {"id": 4, "text": "250", "labels": ["Limit of Detection (LOD)/Value"], "comment": "Using Qiagen EZ1 extraction.", "anot8_org_file_id": "77"}], "min": 25.0, "max": 250.0, "parsed": "25.0 ↔ 250.0"}, "lod_units": {"annotations": [{"id": 2, "text": "genome copies / reaction", "labels": ["Limit of Detection (LOD)/Units"], "comment": "", "anot8_org_file_id": "77"}], "parsed": "genome copies / reaction"}, "lod_minimum_replicates": {"annotations": [{"id": 0, "text": "20", "labels": ["Limit of Detection (LOD)/Minimum Replicates"], "comment": "", "anot8_org_file_id": "77"}], "parsed": ""}, "synthetic_specimen__viral_material": {"annotations": [{"id": 7, "text": "quantified whole viral genomic RNA", "labels": ["Specimen/Synthetic Specimen/Virus", "Specimen/Synthetic Specimen/Virus/Type/Naked RNA"], "comment": "", "anot8_org_file_id": "77"}], "parsed": "Naked RNA"}, "synthetic_specimen__clinical_matrix": {"annotations": [{"id": 14, "text": "pooled sputum samples", "labels": ["Specimen/Synthetic Specimen/Clinical matrix"], "comment": "", "anot8_org_file_id": "77"}], "parsed": ""}}, "amp_survey": {"aug": {"primary_rank": null, "primary_lab_percentage": null, "id": "", "anot8_org_file_id": ""}}}, {"test_id": "roche molecular systems, inc. (rms)__cobas sars-cov-2", "FDA_EUAs_list": {"first_issued_date": "2020-03-12", "developer_name": "Roche Molecular Systems, Inc. (RMS)", "test_name": "cobas SARS-CoV-2", "test_technology": "Molecular Real-time RT-PCR, Pooling", "url_to_IFU_or_EUA": "https://www.fda.gov/media/136049/download"}, "anot8_org": {"file_id": "140", "permalink": "https://anot8.org/1772.2/140"}, "fda_reference_panel_lod_data": {"different_developer_name": false, "different_test_name": false, "results_status": "Results in Table 2A", "lod": 1800, "sample_media_type": "Swabs in Transport Media"}, "self_declared_EUA_data": {"supported_specimen_types": {"annotations": [{"id": 11, "text": "nasal, nasopharyngeal, and oropharyngeal swab ", "labels": ["Supported specimen types"], "comment": "", "anot8_org_file_id": "140"}], "parsed": ""}, "target_genes": {"annotations": [{"id": 13, "text": "ORF1ab", "labels": ["Viral gene(s) targetted"], "comment": "", "anot8_org_file_id": "140"}, {"id": 14, "text": "E", "labels": ["Viral gene(s) targetted"], "comment": "", "anot8_org_file_id": "140"}], "parsed": ""}, "controls__human_gene_target": {"annotations": [{"id": 18, "text": "", "labels": ["Controls/Internal/Human gene target", "Meta/Not specified"], "comment": "", "anot8_org_file_id": "140"}], "parsed": ""}, "primer_probe_sequences": {"annotations": [{"id": 17, "text": "", "labels": ["Primers and probes/Sequences", "Primers and probes/Sequences/Not specified"], "comment": "", "anot8_org_file_id": "140"}], "parsed": "Not specified"}, "lod_value": {"annotations": [{"id": 5, "text": "0.009", "labels": ["Limit of Detection (LOD)/Value"], "comment": "", "anot8_org_file_id": "140"}], "min": 0.009, "max": 0.009, "parsed": "0.009"}, "lod_units": {"annotations": [{"id": 6, "text": "TCID50 / mL", "labels": ["Limit of Detection (LOD)/Units"], "comment": "", "anot8_org_file_id": "140"}], "parsed": "TCID50 / mL"}, "lod_minimum_replicates": {"annotations": [{"id": 4, "text": "21", "labels": ["Limit of Detection (LOD)/Minimum Replicates"], "comment": "", "anot8_org_file_id": "140"}], "parsed": ""}, "synthetic_specimen__viral_material": {"annotations": [{"id": 7, "text": "cultured virus isolate", "labels": ["Specimen/Synthetic Specimen/Virus", "Specimen/Synthetic Specimen/Virus/Type/Live Virus"], "comment": "", "anot8_org_file_id": "140"}], "parsed": "Live Virus"}, "synthetic_specimen__clinical_matrix": {"annotations": [{"id": 1, "text": "simulated clinical matrix", "labels": ["Specimen/Synthetic Specimen/Clinical matrix"], "comment": "", "anot8_org_file_id": "140"}], "parsed": ""}}, "amp_survey": {"aug": {"primary_rank": 1, "primary_lab_percentage": 17, "id": 0, "anot8_org_file_id": "1162"}}}, {"test_id": "thermo fisher scientific, inc.__taqpath covid-19 combo kit", "FDA_EUAs_list": {"first_issued_date": "2020-03-13", "developer_name": "Thermo Fisher Scientific, Inc.", "test_name": "TaqPath COVID-19 Combo Kit", "test_technology": "Molecular Real-time RT-PCR, Home Collection", "url_to_IFU_or_EUA": "https://www.fda.gov/media/136112/download"}, "anot8_org": {"file_id": "29", "permalink": "https://anot8.org/1772.2/29"}, "fda_reference_panel_lod_data": {"different_developer_name": "LIFE TECHNOLOGIES (A PART OF THERMO FISHER SCIENTIFIC, INC.)", "different_test_name": "TAQPATH COVID-19 COMBO KIT, 100 RXN, TAQPATH COVID-19 COMBO KIT, 1,000 RXN", "results_status": "Results in Table 2A", "lod": 180000, "sample_media_type": "Swabs in Transport Media"}, "self_declared_EUA_data": {"supported_specimen_types": {"annotations": [{"id": 5, "text": "upper respiratory specimens (such as nasopharyngeal, oropharyngeal, nasal, and mid-turbinate swabs, and nasopharyngeal aspirate) and bronchoalveolar lavage (BAL)", "labels": ["Supported specimen types"], "comment": "", "anot8_org_file_id": "29"}], "parsed": ""}, "target_genes": {"annotations": [{"id": 6, "text": "ORF1ab, N, S", "labels": ["Viral gene(s) targetted"], "comment": "", "anot8_org_file_id": "29"}], "parsed": ""}, "controls__human_gene_target": {"annotations": [], "parsed": ""}, "primer_probe_sequences": {"annotations": [{"id": 14, "text": "", "labels": ["Primers and probes/Sequences", "Primers and probes/Sequences/Not specified"], "comment": "", "anot8_org_file_id": "29"}], "parsed": "Not specified"}, "lod_value": {"annotations": [{"id": 3, "text": "10", "labels": ["Limit of Detection (LOD)/Value"], "comment": "", "anot8_org_file_id": "29"}], "min": 10.0, "max": 10.0, "parsed": "10.0"}, "lod_units": {"annotations": [{"id": 4, "text": "GCE / reaction", "labels": ["Limit of Detection (LOD)/Units"], "comment": "Genomic Copy Equivalents (GCE)", "anot8_org_file_id": "29"}], "parsed": "genome copies / reaction"}, "lod_minimum_replicates": {"annotations": [{"id": 2, "text": "20", "labels": ["Limit of Detection (LOD)/Minimum Replicates"], "comment": "", "anot8_org_file_id": "29"}], "parsed": ""}, "synthetic_specimen__viral_material": {"annotations": [{"id": 1, "text": " purified SARS-CoV-2 viral genomic RNA", "labels": ["Specimen/Synthetic Specimen/Virus", "Specimen/Synthetic 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for (var s, i = 1, n = arguments.length; i < n; i++) {
s = arguments[i];
for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
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}
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};
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var get_comments_raw_and_references = function (annotations) {
var raw = [];
var comments = [];
var references = [];
annotations.forEach(function (_a) {
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comments.push(comment);
references.push({ anot8_org_file_id: anot8_org_file_id, id: id });
});
return {
raw: raw,
comments: comments,
references: references,
};
};
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var _a = get_comments_raw_and_references(annotations), raw = _a.raw, comments = _a.comments, references = _a.references;
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.map(function (comment) {
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})
.join(" ");
var references_html = references.map(html_ref_link).join(" ");
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comments: comments_html,
references: references_html,
};
};
function ref_link(annotation) {
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var host = safe_get_local_storage_item("anot8_server") || "https://anot8.org";
var ref = host + "/r/1772.2/" + anot8_org_file_id;
if (id !== undefined)
ref += "?h=" + id;
return ref;
}
function safe_get_local_storage_item(item) {
return localStorage && localStorage.getItem(item);
}
function html_ref_link(annotation) {
return "<a href=\"" + ref_link(annotation) + "\">R<a/>";
}
var value_renderer_EUA_URL = function (d) {
var references = "<a href=\"" + d.FDA_EUAs_list.url_to_IFU_or_EUA + "\">R</a>";
return { parsed: " ", references: references };
};
var generic_value_renderer = function (data_node) {
return __assign({ parsed: data_node.parsed }, get_html_comments_raw_and_references(data_node.annotations));
};
var table_fields = [
{
title: "Developer",
value_renderer: null,
category: "test_descriptor",
children: [
{
title: "Name",
value_renderer: function (d) { return ({ parsed: d.FDA_EUAs_list.developer_name }); },
},
{
title: "Test name",
value_renderer: function (d) { return ({ parsed: d.FDA_EUAs_list.test_name }); },
},
{
title: "Latest<sup>*</sup> EUA or IFU",
value_renderer: value_renderer_EUA_URL,
}
],
},
{
title: "Claims",
value_renderer: null,
category: "test_claims",
children: [
{
title: "Test technology",
value_renderer: function (d) { return ({ parsed: d.FDA_EUAs_list.test_technology }); },
},
{
title: "Specimens",
value_renderer: null,
children: [
{
title: "Supported specimen types",
value_renderer: function (d) { return generic_value_renderer(d.self_declared_EUA_data.supported_specimen_types); },
},
{
title: "Transport medium",
value_renderer: null,
hidden: true,
},
]
},
{
// Not in May 13th version of FDA EUA template
title: "Appropriate testing population",
// e.g. * patients suspected of COVID-19 by a healthcare provider
// * pooled samples
// * general, asymptomatic screening population i.e. screening of individuals without symptoms or other reasons to suspect COVID-19
value_renderer: null,
hidden: true,
},
{
// Not in May 13th version of FDA EUA template
title: "Sample pooling",
value_renderer: null,
hidden: true,
children: [
{ title: "Approach", value_renderer: null, hidden: true, },
{ title: "Max no. specimens", value_renderer: null, hidden: true, },
]
},
{
title: "Target gene(s) of SARS-CoV-2",
value_renderer: function (d) { return generic_value_renderer(d.self_declared_EUA_data.target_genes); },
},
{
title: "Primers and probes",
value_renderer: null,
children: [
{
title: "Sequences",
value_renderer: function (d) {
return generic_value_renderer(d.self_declared_EUA_data.primer_probe_sequences);
},
},
{ title: "Sources", value_renderer: null /**/, hidden: true, },
]
},
{
// Not in May 13th version of FDA EUA template
// i.e. can include more than just SARS-CoV-2
title: "Detects pathogen(s)",
value_renderer: null,
hidden: true,
},
{
title: "Limit of Detection (LOD)",
value_renderer: null,
children: [
{
title: "value",
value_renderer: function (d) { return generic_value_renderer(d.self_declared_EUA_data.lod_value); },
},
{
title: "units",
value_renderer: function (d) { return generic_value_renderer(d.self_declared_EUA_data.lod_units); },
},
{
title: "Minimum replicates",
value_renderer: function (d) { return generic_value_renderer(d.self_declared_EUA_data.lod_minimum_replicates); },
},
]
},
{
title: "Intended user",
// e.g. CLIA labs
value_renderer: null,
hidden: true,
},
{ title: "Compatible equipment", value_renderer: null, hidden: true, },
// {
// Product Overview/Test Principle...
// // primer and probe sets and briefly describe what they detect. Please include the nucleic acid sequences for all primers and probes used in the test. Please indicate if the test uses biotin-Streptavidin/avidin chemistry
// },
{
title: "Controls",
value_renderer: null,
children: [
{ title: "Human gene", value_renderer: function (d) { return generic_value_renderer(d.self_declared_EUA_data.controls__human_gene_target); }, },
]
},
{
title: "RNA extraction",
value_renderer: null,
children: [
{ title: "Specimen input volume", value_renderer: null, hidden: true, },
{ title: "RNA extraction method(s)", value_renderer: null, hidden: true, },
{ title: "Nucleic acid elution volume", value_renderer: null, hidden: true, },
{ title: "Purification manual &/ automated", value_renderer: null, hidden: true, },
]
},
{
title: "Reverse transcription",
value_renderer: null,
children: [
{ title: "Input volume", value_renderer: null, hidden: true, },
{ title: "Enzyme mix / kits", value_renderer: null, hidden: true, },
]
},
{
title: "PCR / amplification",
value_renderer: null,
children: [
{ title: "Instrument", value_renderer: null, hidden: true, },
{ title: "Enzyme mix / kits", value_renderer: null, hidden: true, },
{ title: "Reaction volume / μL", value_renderer: null, hidden: true, },
]
},
{
title: "PCR quantification fluoresence detection",
value_renderer: null,
children: [
{ title: "Instrument", value_renderer: null, hidden: true, },
]
},
],
},
{
title: "Validation conditions",
value_renderer: null,
category: "validation_condition",
children: [
{
title: "Author",
value_renderer: function (d) { return ({ parsed: "self" }); },
},
{
title: "Date",
value_renderer: function (d) { return ({ parsed: d.FDA_EUAs_list.first_issued_date }); },
},
{
title: "Patient details",
value_renderer: null,
children: [
{ title: "Age", value_renderer: null, hidden: true, },
{ title: "Race", value_renderer: null, hidden: true, },
{ title: "Gender", value_renderer: null, hidden: true, },
]
},
{ title: "Disease stage", value_renderer: null, hidden: true, },
{
title: "Synthetic Specimen",
value_renderer: null,
children: [
{
title: "Viral material",
value_renderer: function (d) { return generic_value_renderer(d.self_declared_EUA_data.synthetic_specimen__viral_material); },
},
{
title: "Viral material source",
value_renderer: null /**/,
hidden: true,
},
{
title: "Clinical matrix",
value_renderer: function (d) { return generic_value_renderer(d.self_declared_EUA_data.synthetic_specimen__clinical_matrix); },
},
{
title: "Clinical matrix source",
value_renderer: null /**/,
hidden: true,
},
]
},
{
title: "Specimen",
value_renderer: null,
children: [
{
title: "Type",
value_renderer: null /**/,
hidden: true,
},
{
title: "Swab type",
value_renderer: null /**/,
hidden: true,
},
{
title: "Transport medium",
value_renderer: null /**/,
hidden: true,
},
{
title: "Sample volume",
value_renderer: null /**/,
hidden: true,
},
]
},
],
},
{
title: "Metrics",
value_renderer: null,
category: "metric",
children: [
{
title: "Number of clinical samples",
value_renderer: null,
children: [
{
title: "Positives",
value_renderer: null /**/,
hidden: true,
},
{
title: "Controls (negatives)",
value_renderer: null /**/,
hidden: true,
},
]
},
{
title: "Comparator test",
value_renderer: null /**/,
hidden: true,
},
{
title: "Confusion matrix",
value_renderer: null,
children: [
{
title: "True positives",
value_renderer: null /**/,
hidden: true,
},
{
title: "False negatives",
value_renderer: null /**/,
hidden: true,
},
{
title: "True negatives",
value_renderer: null /**/,
hidden: true,
},
{
title: "False positives",
value_renderer: null /**/,
hidden: true,
},
]
},
],
},
{
title: "Usage",
value_renderer: null,
category: "usage",
children: [
{
title: "AMP August Survey",
value_renderer: null,
children: [
{
title: "Rank",
value_renderer: function (d) { return ({
parsed: (d.amp_survey.aug.primary_rank || "").toString(),
references: d.amp_survey.aug.primary_rank ? html_ref_link(d.amp_survey.aug) : "",
}); },
},
{
title: "Percentage Labs",
value_renderer: function (d) { return ({
parsed: (d.amp_survey.aug.primary_lab_percentage || "").toString(),
references: d.amp_survey.aug.primary_rank ? html_ref_link(d.amp_survey.aug) : "",
}); },
}
]
},
],
},
{
title: "Derived values",
value_renderer: null,
category: "derived_values",
children: [],
hidden: true,
},
];
function update_header(table_fields, columns_hidden) {
var table_el = document.getElementById("data_table");
var thead_el = table_el.getElementsByTagName("thead")[0];
thead_el.innerHTML = "";
var row1 = thead_el.insertRow();
var row2 = thead_el.insertRow();
var row3 = thead_el.insertRow();
for (var i1 = 0; i1 < table_fields.length; ++i1) {
var element1 = table_fields[i1];
var className = element1.category + " header_label";
var row1_width = 0;
var row1_height = 1;
if (!(element1.children && element1.children.length)) {
row1_width = ((columns_hidden && element1.hidden) ? 0 : 1);
row1_height = 3;
}
else
for (var i2 = 0; i2 < element1.children.length; ++i2) {
var element2 = element1.children[i2];
var row2_width = 0;
var row2_height = 1;
if (!(element2.children && element2.children.length)) {
row2_width = ((columns_hidden && element2.hidden) ? 0 : 1);
row2_height = 2;
}
else
for (var i3 = 0; i3 < element2.children.length; ++i3) {
var element3 = element2.children[i3];
row2_width += ((columns_hidden && element3.hidden) ? 0 : 1);
var cell3 = document.createElement("th");
row3.appendChild(cell3);
cell3.innerHTML = element3.title;
cell3.className = className + ((columns_hidden && element3.hidden) ? " hidden" : "");
}
var cell2 = document.createElement("th");
row2.appendChild(cell2);
cell2.innerHTML = element2.title;
cell2.colSpan = row2_width;
cell2.rowSpan = row2_height;
cell2.className = className + (((columns_hidden && element2.hidden) || (row2_width === 0)) ? " hidden" : "");
row1_width += row2_width;
}
var cell1 = document.createElement("th");
row1.appendChild(cell1);
cell1.innerHTML = element1.title;
cell1.colSpan = row1_width;
cell1.rowSpan = row1_height;
cell1.className = className + (((columns_hidden && element1.hidden) || (row1_width === 0)) ? " hidden" : "");
}
}
function activate_options(table_fields) {
var cells_expanded = false;
document.getElementById("toggle_expanded_cells").onclick = function () {
cells_expanded = !cells_expanded;
var cells = Array.from(document.getElementsByClassName("value_el"));
if (cells_expanded) {
cells.forEach(function (cell) { return cell.classList.add("expanded"); });
}
else {
cells.forEach(function (cell) { return cell.classList.remove("expanded"); });
}
};
var columns_hidden = true;
update_computed_styles(columns_hidden);
update_header(table_fields, columns_hidden);
document.getElementById("toggle_hidden_columns").onclick = function () {
columns_hidden = !columns_hidden;
update_computed_styles(columns_hidden);
update_header(table_fields, columns_hidden);
};
}
function update_computed_styles(columns_hidden) {
var style_el = document.getElementById("computed_style");
style_el.innerHTML = columns_hidden ? ".hidden { display: none; }" : "";
}
function filter_data_rows_to_remove_serology(data_rows) {
var filtered_data_rows = data_rows.filter(function (d) {
var tech = d.FDA_EUAs_list.test_technology.toLowerCase();
// Finds most of the them.
var remove = tech.includes("serology") || tech.includes("igg") || tech.includes("igm") || tech.includes("total antibody") || tech.includes("immunoassay");
return !remove;
});
return filtered_data_rows;
}
function render_table_body(table_fields, data_rows) {
var table_el = document.getElementById("data_table");
var tbody_el = table_el.getElementsByTagName("tbody")[0];
data_rows.forEach(function (data_row, i) {
var row = tbody_el.insertRow();
iterate_lowest_table_field(table_fields, function (table_field) {
var cell = row.insertCell();
cell.className = table_field.hidden ? "hidden value_el" : "value_el";
cell.addEventListener("click", function () { return cell.classList.toggle("expanded"); });
if (!table_field.value_renderer)
return;
var contents = table_field.value_renderer(data_row);
var raw_el = document.createElement("div");
var parsed_el = document.createElement("div");
var comments_el = document.createElement("div");
var references_el = document.createElement("div");
raw_el.innerHTML = contents.raw || " ";
parsed_el.innerHTML = contents.parsed || "<span style=\"color: #fff; font-size: smaller;\">not parsed</span>";
raw_el.className = "raw_data" + (contents.parsed ? " less_important" : "");
parsed_el.className = "parsed_data";
comments_el.innerHTML = contents.comments || " ";
references_el.innerHTML = contents.references || " ";
cell.appendChild(raw_el);
cell.appendChild(parsed_el);
cell.appendChild(comments_el);
cell.appendChild(references_el);
});
});
}
function iterate_lowest_table_field(table_fields, func) {
for (var i1 = 0; i1 < table_fields.length; ++i1) {
var element1 = table_fields[i1];
if (!(element1.children && element1.children.length)) {
func(element1);
}
else
for (var i2 = 0; i2 < element1.children.length; ++i2) {
var element2 = element1.children[i2];
if (!(element2.children && element2.children.length)) {
func(element2);
}
else
for (var i3 = 0; i3 < element2.children.length; ++i3) {
var element3 = element2.children[i3];
func(element3);
}
}
}
}
function hide_loading_status() {
var loading_status_el = document.getElementById("loading_status");
loading_status_el.style.display = "none";
}
var html_escape_table = {
"&": "&",
'"': """,
"'": "'",
">": ">",
"<": "<",
};
var html_escape_regexps = [];
Object.keys(html_escape_table).forEach(function (key) {
var regexp = new RegExp(key, "g");
var replacement = html_escape_table[key];
html_escape_regexps.push({ regexp: regexp, replacement: replacement });
});
function escape_html(html) {
if (!html)
return html;
html_escape_regexps.forEach(function (_a) {
var regexp = _a.regexp, replacement = _a.replacement;
html = html.replace(regexp, replacement);
});
return html;
}
// Smells as it contains update for table header due to colspan not being under CSS control
// Need proper state / store manager
activate_options(table_fields);
var filtered_data = filter_data_rows_to_remove_serology(merged_data);
render_table_body(table_fields, filtered_data);
hide_loading_status();
</script>
</body>
</html>