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Download dialog for datasets has a typo #1309

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dgmccart opened this issue Nov 5, 2024 · 0 comments
Open

Download dialog for datasets has a typo #1309

dgmccart opened this issue Nov 5, 2024 · 0 comments
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bug Something isn't working frontend severity - medium May interrupt the Portal, causing it to behave in a less than optimal way (e.g., broken link, typo)

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@dgmccart
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dgmccart commented Nov 5, 2024

Describe the bug
The download dialog for datasets causes an error when run as a python script due to the argument given to the download_everything function.

To Reproduce
Steps to reproduce the behavior:

  1. Go to dataset 10162
  2. Click on Download Dataset and move to the via API tab
  3. Copy and paste the code and save it as a python script
Screenshot 2024-11-05 at 3 17 12 PM
  1. Run the script and see the following error
0%|                                                                                                                             | 0.00/7.65G [00:00<?, ?iB/s]
Traceback (most recent call last):
  File "/Users/dmccarthy/Downloads/test_download.py", line 6, in <module>
    dataset.download_everything('10162')
  File "/opt/miniconda3/envs/cryoet/lib/python3.12/site-packages/cryoet_data_portal/_models.py", line 105, in download_everything
    download_directory(self.s3_prefix, recursive_prefix, dest_path)
  File "/opt/miniconda3/envs/cryoet/lib/python3.12/site-packages/cryoet_data_portal/_file_tools.py", line 106, in download_directory
    local_file = get_destination_path(
                 ^^^^^^^^^^^^^^^^^^^^^
  File "/opt/miniconda3/envs/cryoet/lib/python3.12/site-packages/cryoet_data_portal/_file_tools.py", line 65, in get_destination_path
    raise ValueError("Recursive downloads require a base directory")
ValueError: Recursive downloads require a base directory

Removing the argument to download everything fixes the problem, resulting in the dataset being downloaded in the current working directory. Correct code:

from cryoet_data_portal import Client, Dataset

client = Client()

dataset = Dataset.get_by_id(client, 10162)
dataset.download_everything()
@dgmccart dgmccart added the bug Something isn't working label Nov 5, 2024
@codemonkey800 codemonkey800 self-assigned this Nov 6, 2024
codemonkey800 added a commit that referenced this issue Nov 6, 2024
#1308
#1309

Fixes issue with API code snippet when downloading all datasets

## Demo

### Download Dataset

<img width="548" alt="image"
src="https://github.com/user-attachments/assets/ec6bb16c-7c11-40bb-b720-dc5a3e25448b">

### Download All Annotations

<img width="539" alt="image"
src="https://github.com/user-attachments/assets/eb09e081-82a6-4b5b-82a8-835bad1babb4">
@junxini junxini added the severity - medium May interrupt the Portal, causing it to behave in a less than optimal way (e.g., broken link, typo) label Nov 27, 2024
@junxini junxini added this to the sprint 9 (phase 4) milestone Nov 27, 2024
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bug Something isn't working frontend severity - medium May interrupt the Portal, causing it to behave in a less than optimal way (e.g., broken link, typo)
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