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Add taxon names to refined_taxon_count_out file #295

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Add taxon names to refined_taxon_count_out file #295

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2 changes: 2 additions & 0 deletions workflows/index-generation/index_generation.wdl
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Original file line number Diff line number Diff line change
Expand Up @@ -97,6 +97,7 @@ workflow index_generation {
File nt_info_db = GenerateNTDB.nt_info_db
File nr_loc_db = GenerateNRDB.nr_loc_db
Directory diamond_index = GenerateIndexDiamond.diamond_index
File tax_id_to_names_csv = GenerateIndexLineages.tax_id_to_names_csv
File taxid_lineages_db = GenerateIndexLineages.taxid_lineages_db
File versioned_taxid_lineages_csv = GenerateIndexLineages.versioned_taxid_lineages_csv
File deuterostome_taxids = GenerateIndexLineages.deuterostome_taxids
Expand Down Expand Up @@ -327,6 +328,7 @@ task GenerateIndexLineages {

output {
File taxid_lineages_db = "taxid-lineages.marisa"
File tax_id_to_names_csv = "names.csv.gz"
File versioned_taxid_lineages_csv = "versioned-taxid-lineages.csv.gz"
File deuterostome_taxids = "deuterostome_taxids.txt"
File taxon_ignore_list = "taxon_ignore_list.txt"
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