DESCRIPTION

Package: redeemR
Title: R package for Regulatory multi-omics with Deep Mitochondrial mutation profiling 
Version: 1.0
Authors@R: 
    person("Chen", "Weng", , "cweng@broadinstitute.org", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0003-0801-7037"))
Description: Introduce a new approach for single-cell Regulatory multi-omics (transcriptomics and chromatin accessibility) with Deep Mitochondrial mutation profiling (~10-fold increase in detection rate), or ReDeeM. redeemR is the R package that facilitates mutation refining, lineage tracing, as well multiomics integration analysis. 
License: MIT LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Imports: 
    ape,
    doMC,
    doParallel,
    dplyr,
    foreach,
    ggExtra,
    ggnewscale,
    ggplot2,
    ggtree,
    ggtreeExtra,
    gridExtra,
    igraph,
    Matrix,
    phangorn,
    phytools,
    pryr,
    qvalue,
    RColorBrewer,
    reshape2,
    Seurat,
    stats,
    tibble,
    treeio,
    tidytree,
Depends: 
    R (>= 2.10)
LazyData: true