log

setwd("/lab/solexa_weissman/cweng/Projects/MitoTracing_Velocity/SecondaryAnalysis/Donor4Donor9/")
source("activate.R") # Can skip this if put in .Rprofile 
Sys.setenv(RENV_PATHS_CACHE = "/lab/solexa_weissman/cweng/Packages/R/x86_64-pc-linux-gnu-library/4.1-focal") 
renv::paths$cache()
setwd("/lab/solexa_weissman/cweng/Packages/redeemR")

usethis::use_package("Matrix")
usethis::use_package("RColorBrewer")
usethis::use_dev_package("SCAVENGE",remote="github::sankaranlab/SCAVENGE")
usethis::use_package("Seurat")
usethis::use_package("ape")
usethis::use_package("doMC")
usethis::use_package("doParallel")
usethis::use_package("dplyr")
usethis::use_package("foreach")
usethis::use_package("ggExtra")
usethis::use_package("ggnewscale")
usethis::use_package("ggplot2")
usethis::use_package("ggtree")
usethis::use_package("ggtreeExtra")
usethis::use_package("gridExtra")
usethis::use_package("igraph")
usethis::use_package("phangorn")
usethis::use_package("phytools")
usethis::use_package("pryr")
usethis::use_package("qvalue")
usethis::use_package("reshape2")
usethis::use_package("stats")
usethis::use_package("tibble")
usethis::use_package("tidytree")
usethis::use_package("treeio")