From e2903e7fad0d8808a314039e9e9b941670e85fc7 Mon Sep 17 00:00:00 2001
From: Pattrigue <patrick@gamehouse.dk>
Date: Wed, 12 Jun 2024 16:34:13 +0200
Subject: [PATCH 1/3] fix table captions

---
 baseline/experiment_analysis/experiment_analysis.ipynb      | 2 +-
 report_thesis/src/sections/appendix/index.tex               | 6 +++---
 .../src/sections/appendix/tables/Al2O3_overview.tex         | 2 +-
 report_thesis/src/sections/appendix/tables/CaO_overview.tex | 2 +-
 .../src/sections/appendix/tables/FeOT_overview.tex          | 2 +-
 report_thesis/src/sections/appendix/tables/K2O_overview.tex | 2 +-
 report_thesis/src/sections/appendix/tables/MgO_overview.tex | 2 +-
 .../src/sections/appendix/tables/Na2O_overview.tex          | 2 +-
 .../src/sections/appendix/tables/SiO2_overview.tex          | 2 +-
 .../src/sections/appendix/tables/TiO2_overview.tex          | 2 +-
 report_thesis/src/sections/background/data_overview.tex     | 2 +-
 report_thesis/src/sections/baseline_replica.tex             | 2 +-
 report_thesis/src/sections/experiments/data_preparation.tex | 4 ++--
 .../experiments/inital_experiments/init_results_table.tex   | 2 +-
 .../experiments/inital_experiments/initial_results.tex      | 6 +++---
 .../experiments/optimization_experiment/optuna_ranges.tex   | 4 ++--
 .../src/sections/experiments/stacking_ensemble.tex          | 6 +++---
 report_thesis/src/sections/introduction.tex                 | 2 +-
 .../src/sections/proposed_approach/model_selection.tex      | 2 +-
 .../src/sections/results/oxide_comparison_table.tex         | 6 +++---
 20 files changed, 30 insertions(+), 30 deletions(-)

diff --git a/baseline/experiment_analysis/experiment_analysis.ipynb b/baseline/experiment_analysis/experiment_analysis.ipynb
index fc1a45b2..1abdcaa4 100644
--- a/baseline/experiment_analysis/experiment_analysis.ipynb
+++ b/baseline/experiment_analysis/experiment_analysis.ipynb
@@ -2380,8 +2380,8 @@
     "    with open(path, \"w\") as file:\n",
     "        file.write(\"\\\\begin{table}[!htb]\\n\")\n",
     "        file.write(\"\\\\centering\\n\")\n",
-    "        file.write(latex_table)\n",
     "        file.write(\"\\\\caption{Overview of model types for \\\\ce{\" + oxide_name + \"} oxide}\\n\")\n",
+    "        file.write(latex_table)\n",
     "        file.write(\"\\\\label{tab:\" + oxide + \"_overview}\\n\")\n",
     "        file.write(\"\\\\end{table}\\n\")\n"
    ]
diff --git a/report_thesis/src/sections/appendix/index.tex b/report_thesis/src/sections/appendix/index.tex
index bfa93394..7b88fa86 100644
--- a/report_thesis/src/sections/appendix/index.tex
+++ b/report_thesis/src/sections/appendix/index.tex
@@ -53,6 +53,7 @@ \subsection{Cross-Validation Fold Plots for Major Oxides}\label{subsec:cv_plots}
 \subsection{Initial Experiment: Model Hyperparameters}\label{subsec:initial_experiment_hyperparameters}
 \begin{table}[!htb]
 \centering
+\caption{Explictly set hyperparameters for the \gls{pls}, \gls{svr}, ridge, \gls{lasso}, \gls{enet}, \gls{rf}, and \gls{etr} models. When not explicitly set, the default hyperparameters provided by the libraries listed in Section~\ref{sec:experimental_setup} are used.}
 \begin{tabular}{@{}llp{0.5\textwidth}@{}}
 \toprule
 \textbf{Model} & \textbf{Hyperparameter} & \textbf{Value} \\
@@ -102,7 +103,6 @@ \subsection{Initial Experiment: Model Hyperparameters}\label{subsec:initial_expe
 & \texttt{random\_state} & 42 \\
 \midrule
 \end{tabular}
-\caption{Explictly set hyperparameters for the \gls{pls}, \gls{svr}, ridge, \gls{lasso}, \gls{enet}, \gls{rf}, and \gls{etr} models. When not explicitly set, the default hyperparameters provided by the libraries listed in Section~\ref{sec:experimental_setup} are used.}
 \label{tab:combined_hyperparameters}
 \end{table}
 
@@ -110,6 +110,7 @@ \subsection{Initial Experiment: Model Hyperparameters}\label{subsec:initial_expe
 
 \begin{table}[!htb]
 \centering
+\caption{Explictly set hyperparameters for the \gls{gbr} and \gls{xgboost} models. When not explicitly set, the default hyperparameters provided by the libraries listed in Section~\ref{sec:experimental_setup} are used. The \gls{ngboost} model does not have any explicitly set hyperparameters.}
 \begin{tabular}{@{}llp{0.5\textwidth}@{}}
 \toprule
 \textbf{Model} & \textbf{Hyperparameter} & \textbf{Value} \\
@@ -149,7 +150,6 @@ \subsection{Initial Experiment: Model Hyperparameters}\label{subsec:initial_expe
 & \texttt{eval\_metric} & rmse \\
 \bottomrule
 \end{tabular}
-\caption{Explictly set hyperparameters for the \gls{gbr} and \gls{xgboost} models. When not explicitly set, the default hyperparameters provided by the libraries listed in Section~\ref{sec:experimental_setup} are used. The \gls{ngboost} model does not have any explicitly set hyperparameters.}
 \label{tab:combined_hyperparameters}
 \end{table}
 
@@ -181,6 +181,7 @@ \subsection{Initial Experiment: Model Hyperparameters}\label{subsec:initial_expe
 
 \begin{table}[!htb]
   \centering
+  \caption{Summary of the Convolutional Neural Network Architecture}
   \begin{tabular}{lll}
     \toprule
     \textbf{Layer} & \textbf{Output Shape} & \textbf{Hyperparameter} \\ \midrule
@@ -211,7 +212,6 @@ \subsection{Initial Experiment: Model Hyperparameters}\label{subsec:initial_expe
     \multicolumn{3}{l}{\textbf{Learning Rate:} 0.001} \\
     \bottomrule
   \end{tabular}
-  \caption{Summary of the Convolutional Neural Network Architecture}
   \label{tab:cnn_architecture}
 \end{table}
 
diff --git a/report_thesis/src/sections/appendix/tables/Al2O3_overview.tex b/report_thesis/src/sections/appendix/tables/Al2O3_overview.tex
index b02094e0..02b15773 100644
--- a/report_thesis/src/sections/appendix/tables/Al2O3_overview.tex
+++ b/report_thesis/src/sections/appendix/tables/Al2O3_overview.tex
@@ -1,5 +1,6 @@
 \begin{table}[!htb]
 \centering
+\caption{Overview of model types for \ce{Al2O3} oxide}
 \begin{tabular}{llllllll}
 \toprule
 \ce{Al2O3} & Model Type & Transformer Type & PCA Type & Scaler Type & \gls{rmsecv} & Std. dev. CV & \gls{rmsep} \\
@@ -16,6 +17,5 @@
  & \texttt{random\_forest} & \texttt{power\_transformer} & \texttt{none} & \texttt{max\_abs\_scaler} & 2.302 & 2.295 & 2.111 \\
 \bottomrule
 \end{tabular}
-\caption{Overview of model types for \ce{Al2O3} oxide}
 \label{tab:Al2O3_overview}
 \end{table}
diff --git a/report_thesis/src/sections/appendix/tables/CaO_overview.tex b/report_thesis/src/sections/appendix/tables/CaO_overview.tex
index a054f1d3..d537c1dc 100644
--- a/report_thesis/src/sections/appendix/tables/CaO_overview.tex
+++ b/report_thesis/src/sections/appendix/tables/CaO_overview.tex
@@ -1,5 +1,6 @@
 \begin{table}[!htb]
 \centering
+\caption{Overview of model types for \ce{CaO} oxide}
 \begin{tabular}{llllllll}
 \toprule
 \ce{CaO} & Model Type & Transformer Type & PCA Type & Scaler Type & \gls{rmsecv} & Std. dev. CV & \gls{rmsep} \\
@@ -16,6 +17,5 @@
  & \texttt{lasso} & \texttt{power\_transformer} & \texttt{none} & \texttt{min\_max\_scaler} & 1.529 & 1.514 & 1.684 \\
 \bottomrule
 \end{tabular}
-\caption{Overview of model types for \ce{CaO} oxide}
 \label{tab:CaO_overview}
 \end{table}
diff --git a/report_thesis/src/sections/appendix/tables/FeOT_overview.tex b/report_thesis/src/sections/appendix/tables/FeOT_overview.tex
index 16950aa1..61c0b907 100644
--- a/report_thesis/src/sections/appendix/tables/FeOT_overview.tex
+++ b/report_thesis/src/sections/appendix/tables/FeOT_overview.tex
@@ -1,5 +1,6 @@
 \begin{table}[!htb]
 \centering
+\caption{Overview of model types for \ce{FeO_T} oxide}
 \begin{tabular}{llllllll}
 \toprule
 \ce{FeO_T} & Model Type & Transformer Type & PCA Type & Scaler Type & \gls{rmsecv} & Std. dev. CV & \gls{rmsep} \\
@@ -16,6 +17,5 @@
  & \texttt{random\_forest} & \texttt{quantile\_transformer} & \texttt{none} & \texttt{norm3\_scaler} & 3.079 & 3.044 & 2.018 \\
 \bottomrule
 \end{tabular}
-\caption{Overview of model types for \ce{FeO_T} oxide}
 \label{tab:FeOT_overview}
 \end{table}
diff --git a/report_thesis/src/sections/appendix/tables/K2O_overview.tex b/report_thesis/src/sections/appendix/tables/K2O_overview.tex
index 438c528d..d27e17c3 100644
--- a/report_thesis/src/sections/appendix/tables/K2O_overview.tex
+++ b/report_thesis/src/sections/appendix/tables/K2O_overview.tex
@@ -1,5 +1,6 @@
 \begin{table}[!htb]
 \centering
+\caption{Overview of model types for \ce{K2O} oxide}
 \begin{tabular}{llllllll}
 \toprule
 \ce{K2O} & Model Type & Transformer Type & PCA Type & Scaler Type & \gls{rmsecv} & Std. dev. CV & \gls{rmsep} \\
@@ -16,6 +17,5 @@
  & \texttt{extra\_trees} & \texttt{power\_transformer} & \texttt{none} & \texttt{robust\_scaler} & 0.714 & 0.709 & 0.464 \\
 \bottomrule
 \end{tabular}
-\caption{Overview of model types for \ce{K2O} oxide}
 \label{tab:K2O_overview}
 \end{table}
diff --git a/report_thesis/src/sections/appendix/tables/MgO_overview.tex b/report_thesis/src/sections/appendix/tables/MgO_overview.tex
index 9719c367..5d75916a 100644
--- a/report_thesis/src/sections/appendix/tables/MgO_overview.tex
+++ b/report_thesis/src/sections/appendix/tables/MgO_overview.tex
@@ -1,5 +1,6 @@
 \begin{table}[!htb]
 \centering
+\caption{Overview of model types for \ce{MgO} oxide}
 \begin{tabular}{llllllll}
 \toprule
 \ce{MgO} & Model Type & Transformer Type & PCA Type & Scaler Type & \gls{rmsecv} & Std. dev. CV & \gls{rmsep} \\
@@ -16,6 +17,5 @@
  & \texttt{random\_forest} & \texttt{quantile\_transformer} & \texttt{none} & \texttt{norm3\_scaler} & 1.640 & 1.630 & 0.973 \\
 \bottomrule
 \end{tabular}
-\caption{Overview of model types for \ce{MgO} oxide}
 \label{tab:MgO_overview}
 \end{table}
diff --git a/report_thesis/src/sections/appendix/tables/Na2O_overview.tex b/report_thesis/src/sections/appendix/tables/Na2O_overview.tex
index 3fc2965b..9c480f27 100644
--- a/report_thesis/src/sections/appendix/tables/Na2O_overview.tex
+++ b/report_thesis/src/sections/appendix/tables/Na2O_overview.tex
@@ -1,5 +1,6 @@
 \begin{table}[!htb]
 \centering
+\caption{Overview of model types for \ce{Na2O} oxide}
 \begin{tabular}{llllllll}
 \toprule
 \ce{Na2O} & Model Type & Transformer Type & PCA Type & Scaler Type & \gls{rmsecv} & Std. dev. CV & \gls{rmsep} \\
@@ -16,6 +17,5 @@
  & \texttt{ridge} & \texttt{quantile\_transformer} & \texttt{none} & \texttt{norm3\_scaler} & 1.011 & 1.001 & 0.467 \\
 \bottomrule
 \end{tabular}
-\caption{Overview of model types for \ce{Na2O} oxide}
 \label{tab:Na2O_overview}
 \end{table}
diff --git a/report_thesis/src/sections/appendix/tables/SiO2_overview.tex b/report_thesis/src/sections/appendix/tables/SiO2_overview.tex
index cfea6e01..d5bde400 100644
--- a/report_thesis/src/sections/appendix/tables/SiO2_overview.tex
+++ b/report_thesis/src/sections/appendix/tables/SiO2_overview.tex
@@ -1,5 +1,6 @@
 \begin{table}[!htb]
 \centering
+\caption{Overview of model types for \ce{SiO2} oxide}
 \begin{tabular}{llllllll}
 \toprule
 \ce{SiO2} & Model Type & Transformer Type & PCA Type & Scaler Type & \gls{rmsecv} & Std. dev. CV & \gls{rmsep} \\
@@ -16,6 +17,5 @@
  & \texttt{random\_forest} & \texttt{none} & \texttt{none} & \texttt{norm3\_scaler} & 5.204 & 5.192 & 3.788 \\
 \bottomrule
 \end{tabular}
-\caption{Overview of model types for \ce{SiO2} oxide}
 \label{tab:SiO2_overview}
 \end{table}
diff --git a/report_thesis/src/sections/appendix/tables/TiO2_overview.tex b/report_thesis/src/sections/appendix/tables/TiO2_overview.tex
index 5348d0be..eb5e40fe 100644
--- a/report_thesis/src/sections/appendix/tables/TiO2_overview.tex
+++ b/report_thesis/src/sections/appendix/tables/TiO2_overview.tex
@@ -1,5 +1,6 @@
 \begin{table}[!htb]
 \centering
+\caption{Overview of model types for \ce{TiO2} oxide}
 \begin{tabular}{llllllll}
 \toprule
 \ce{TiO2} & Model Type & Transformer Type & PCA Type & Scaler Type & \gls{rmsecv} & Std. dev. CV & \gls{rmsep} \\
@@ -16,6 +17,5 @@
  & \texttt{pls} & \texttt{power\_transformer} & \texttt{kernel\_pca} & \texttt{robust\_scaler} & 0.441 & 0.441 & 0.411 \\
 \bottomrule
 \end{tabular}
-\caption{Overview of model types for \ce{TiO2} oxide}
 \label{tab:TiO2_overview}
 \end{table}
diff --git a/report_thesis/src/sections/background/data_overview.tex b/report_thesis/src/sections/background/data_overview.tex
index b90991ed..d30d5bc0 100644
--- a/report_thesis/src/sections/background/data_overview.tex
+++ b/report_thesis/src/sections/background/data_overview.tex
@@ -5,6 +5,7 @@ \subsection{Data Overview}\label{sec:data-overview}
 
 \begin{table*}
 \centering
+\caption{Example of CCS data for a single location (from \citet{p9_paper})}
 \begin{tabular}{llllllll}
 \toprule
      wave &         shot1 &         shot2 &  $\cdots$ &        shot49 &       shot50  & median        & mean          \\
@@ -16,7 +17,6 @@ \subsection{Data Overview}\label{sec:data-overview}
 905.57349 & 1.9864713e+10 & 1.2956832e+10 & $\cdots$  & 1.9785415e+10 & 7.1994239e+09 & 1.1311150e+10 & 1.2201224e+10 \\
 \bottomrule
 \end{tabular}
-\caption{Example of CCS data for a single location (from \citet{p9_paper})}
 \label{tab:ccs_data_example}
 \end{table*}
 
diff --git a/report_thesis/src/sections/baseline_replica.tex b/report_thesis/src/sections/baseline_replica.tex
index 3b7bab71..bb352dd8 100644
--- a/report_thesis/src/sections/baseline_replica.tex
+++ b/report_thesis/src/sections/baseline_replica.tex
@@ -62,6 +62,7 @@ \section{Baseline \& Replica}\label{sec:baseline_replica}
 
 \begin{table*}
 	\centering
+	\caption{\gls{rmse}s of the original and our replicas of the \gls{pls1-sm}, \gls{ica}, and \gls{moc} models.}
 	\begin{tabular*}{\textwidth}{@{\extracolsep{\fill}}lllllll}
 		\toprule
 		Element    & \gls{pls1-sm} (original) & PLS1-SM (replica) & \gls{ica} (original) & ICA (replica) & \gls{moc} (original) & \gls{moc} (replica) \\
@@ -76,7 +77,6 @@ \section{Baseline \& Replica}\label{sec:baseline_replica}
 		\ce{K2O}   & 0.72                     & 0.72              & 0.98                 & 1.38          & 0.82                 & 1.91                \\
 		\bottomrule
 	\end{tabular*}
-	\caption{\gls{rmse}s of the original and our replicas of the \gls{pls1-sm}, \gls{ica}, and \gls{moc} models.}
 	\label{tab:replica_results_rmses}
 \end{table*}
 
diff --git a/report_thesis/src/sections/experiments/data_preparation.tex b/report_thesis/src/sections/experiments/data_preparation.tex
index c184abe5..4beba7d8 100644
--- a/report_thesis/src/sections/experiments/data_preparation.tex
+++ b/report_thesis/src/sections/experiments/data_preparation.tex
@@ -27,6 +27,7 @@ \subsection{Data Preparation}\label{sec:data-preparation}
 
 \begin{table*}
 \centering
+\caption{Excerpt from the composition dataset (from \citet{p9_paper})}
 \begin{tabular}{lllllllllllll}
 \toprule
      Target & Spectrum Name & Sample Name & \ce{SiO2} & \ce{TiO2} & \ce{Al2O3} & \ce{FeO_T} & \ce{MnO} & \ce{MgO} & \ce{CaO} & \ce{Na2O} & \ce{K2O} & \ce{MOC total} \\
@@ -38,7 +39,6 @@ \subsection{Data Preparation}\label{sec:data-preparation}
     TB2 & --- & --- & 60.4 & 0.93 & 20.5 & 11.6536 & 0.047 & 1.86 & 0.2 & 1.29 & 3.86 & 100.7406 \\
 \bottomrule
 \end{tabular}
-\caption{Excerpt from the composition dataset (from \citet{p9_paper})}
 \label{tab:composition_data_example}
 \end{table*}
 
@@ -48,6 +48,7 @@ \subsection{Data Preparation}\label{sec:data-preparation}
 
 \begin{table*}
 \centering
+\caption{Excerpt from the final dataset (values have been rounded to two decimal places for brevity).}
 \footnotesize
 \begin{tabular}{llllllllllllllllllllll}
 \toprule
@@ -66,6 +67,5 @@ \subsection{Data Preparation}\label{sec:data-preparation}
 	$\vdots$ & $\cdots$ & $\vdots$ & $\vdots$ & $\cdots$ & $\vdots$ & $\vdots$ & $\vdots$ & $\vdots$ & $\vdots$ & $\vdots$ & $\vdots$ & $\vdots$ & $\vdots$ & $\vdots$ & $\vdots$ \\
 \midrule
 \end{tabular}
-\caption{Excerpt from the final dataset (values have been rounded to two decimal places for brevity).}
 \label{tab:final_dataset_example}
 \end{table*}
\ No newline at end of file
diff --git a/report_thesis/src/sections/experiments/inital_experiments/init_results_table.tex b/report_thesis/src/sections/experiments/inital_experiments/init_results_table.tex
index 4bc62cdd..8f9387d1 100644
--- a/report_thesis/src/sections/experiments/inital_experiments/init_results_table.tex
+++ b/report_thesis/src/sections/experiments/inital_experiments/init_results_table.tex
@@ -1,5 +1,6 @@
 \begin{table*}[]
 \centering
+\caption{Initial results for the different models and metrics.}
 \resizebox{1\textwidth}{!}{%
 \begin{tabular}{l|cccc|cccc|cccc}
 Model & \multicolumn{4}{c}{Ridge} & \multicolumn{4}{c}{\gls{lasso}} & \multicolumn{4}{c}{\gls{enet}} \\
@@ -60,6 +61,5 @@
 \hline
 \end{tabular}%
 }
-\caption{Initial results for the different models and metrics.}
 \label{tab:init_results}
 \end{table*}
diff --git a/report_thesis/src/sections/experiments/inital_experiments/initial_results.tex b/report_thesis/src/sections/experiments/inital_experiments/initial_results.tex
index 9c6d9750..98d23c5d 100644
--- a/report_thesis/src/sections/experiments/inital_experiments/initial_results.tex
+++ b/report_thesis/src/sections/experiments/inital_experiments/initial_results.tex
@@ -46,6 +46,7 @@ \subsection{Initial Results}
 \end{figure*}
 
 \begin{table}
+\caption{Relative performance of each model compared to the best performing model, measured by normalized RMSECV and multiplied by 100 for percentage. A higher percentage indicates worse performance. The 'Diff. vs Prev.' column shows the difference in performance compared to the next best model, measured in percentage points.}
 \begin{tabular}{lrr}
 \toprule
 Model & Relative Performance (\%) & Diff. vs Prev. \\
@@ -64,7 +65,6 @@ \subsection{Initial Results}
 CNN & 143.18 & 15.36 \\
 \bottomrule
 \end{tabular}
-\caption{Relative performance of each model compared to the best performing model, measured by normalized RMSECV and multiplied by 100 for percentage. A higher percentage indicates worse performance. The 'Diff. vs Prev.' column shows the difference in performance compared to the next best model, measured in percentage points.}
 \label{tab:relative_performance}
 \end{table}
 
@@ -74,15 +74,15 @@ \subsection{Initial Results}
 \centering
 \begin{minipage}{.7\textwidth}
   \centering
-  \input{sections/experiments/inital_experiments/best_results_table.tex}
   \caption{Lowest metric and corresponding model for each oxide.}
+  \input{sections/experiments/inital_experiments/best_results_table.tex}
   \label{tab:best_results}
 \end{minipage}%
 \hspace{0.03\textwidth}
 \begin{minipage}{.25\textwidth}
   \centering
-  \input{sections/experiments/inital_experiments/best_model_occurrences_table.tex}
   \caption{Occurrences of the best model for each oxide.}
+  \input{sections/experiments/inital_experiments/best_model_occurrences_table.tex}
   \label{tab:best_model_occurrences}
 \end{minipage}
 \end{table*}
diff --git a/report_thesis/src/sections/experiments/optimization_experiment/optuna_ranges.tex b/report_thesis/src/sections/experiments/optimization_experiment/optuna_ranges.tex
index cdd13460..df7ce9c6 100644
--- a/report_thesis/src/sections/experiments/optimization_experiment/optuna_ranges.tex
+++ b/report_thesis/src/sections/experiments/optimization_experiment/optuna_ranges.tex
@@ -1,5 +1,6 @@
 \begin{table*}
 \centering
+\caption{Optuna preprocessing configuration ranges.}
 \begin{tabular}{@{}l>{\ttfamily}lp{0.5\textwidth}@{}}
 \toprule
 \textbf{Model}                       & \textbf{Parameter}                & \textbf{Range}                           \\ \midrule
@@ -22,13 +23,13 @@
 MaxAbsScaler                         & -                                 & -                                        \\ \midrule
 Norm3Scaler                          & -                                 & -                                        \\ \midrule
 \end{tabular}
-\caption{Optuna preprocessing configuration ranges.}
 \label{tab:optuna_preprocessing_configurations}
 \end{table*}
 
 
 \begin{table*}
 \centering
+\caption{Optuna model configuration ranges.}
 \begin{tabular}{@{}l>{\ttfamily}lp{0.5\textwidth}@{}}
 \toprule
 \textbf{Model}                 & \textbf{Parameter}          & \textbf{Range}                           \\ \midrule
@@ -76,6 +77,5 @@
                                & min\_samples\_leaf          & 1 - 10                                    \\ \cmidrule{2-3}
                                & max\_features               & \{sqrt, log2\}                            \\ \bottomrule
 \end{tabular}
-\caption{Optuna model configuration ranges.}
 \label{tab:optuna_model_configurations}
 \end{table*}
\ No newline at end of file
diff --git a/report_thesis/src/sections/experiments/stacking_ensemble.tex b/report_thesis/src/sections/experiments/stacking_ensemble.tex
index fd9c34d8..7f44000c 100644
--- a/report_thesis/src/sections/experiments/stacking_ensemble.tex
+++ b/report_thesis/src/sections/experiments/stacking_ensemble.tex
@@ -79,6 +79,7 @@ \subsubsection{Results}\label{subsec:stacking_ensemble_results}
 
 \begin{table}
 \centering
+\caption{Stacking ensemble results using the \gls{enet} model as the meta-learner with default hyperparameters.}
 \begin{tabular}{lcccc}
 \toprule
 Oxide          & \gls{rmsep} & STDDEV & \gls{rmsecv}         & Std. Dev. CV          \\
@@ -94,11 +95,11 @@ \subsubsection{Results}\label{subsec:stacking_ensemble_results}
 \bottomrule
 \end{tabular}
 \label{tab:stacking_ensemble_results_enet}
-\caption{Stacking ensemble results using the \gls{enet} model as the meta-learner with default hyperparameters.}
 \end{table}
 
 \begin{table}
 \centering
+\caption{Stacking ensemble results using the \gls{enet} model as the meta-learner with $\alpha = 0.1$.}
 \begin{tabular}{lcccc}
 \toprule
 Oxide          & \gls{rmsep} & STDDEV & \gls{rmsecv}         & Std. Dev. CV          \\
@@ -114,11 +115,11 @@ \subsubsection{Results}\label{subsec:stacking_ensemble_results}
 \bottomrule
 \end{tabular}
 \label{tab:stacking_ensemble_results_enet_01}
-\caption{Stacking ensemble results using the \gls{enet} model as the meta-learner with $\alpha = 0.1$.}
 \end{table}
 
 \begin{table}
 \centering
+\caption{Stacking ensemble results using the \gls{svr} model as the meta-learner with default hyperparameters.}
 \begin{tabular}{lcccc}
 \toprule
 Oxide          & \gls{rmsep} & STDDEV & \gls{rmsecv}         & Std. Dev. CV          \\
@@ -134,7 +135,6 @@ \subsubsection{Results}\label{subsec:stacking_ensemble_results}
 \bottomrule
 \end{tabular}
 \label{tab:stacking_ensemble_results_svr}
-\caption{Stacking ensemble results using the \gls{svr} model as the meta-learner with default hyperparameters.}
 \end{table}
 
 \begin{figure*}
diff --git a/report_thesis/src/sections/introduction.tex b/report_thesis/src/sections/introduction.tex
index b7a760ee..cf2df94b 100644
--- a/report_thesis/src/sections/introduction.tex
+++ b/report_thesis/src/sections/introduction.tex
@@ -55,6 +55,7 @@ \section{Introduction}\label{sec:introduction}
 
 \begin{table}
 \centering
+\caption{Table of Terms}
 \begin{tabularx}{\columnwidth}{lX} % l for left, X for the cell that should be wrapped
 \toprule
 Term & Definition \\
@@ -65,6 +66,5 @@ \section{Introduction}\label{sec:introduction}
 Extreme Concentration Values & The concentration values of oxides in the targets that are significantly higher or lower than the majority of the data. \\
 \bottomrule
 \end{tabularx}
-\caption{Table of Terms}
 \label{tab:terms}
 \end{table}
\ No newline at end of file
diff --git a/report_thesis/src/sections/proposed_approach/model_selection.tex b/report_thesis/src/sections/proposed_approach/model_selection.tex
index 81907fb2..66e9b2d9 100644
--- a/report_thesis/src/sections/proposed_approach/model_selection.tex
+++ b/report_thesis/src/sections/proposed_approach/model_selection.tex
@@ -46,6 +46,7 @@ \subsection{Model and Preprocessing Selection}\label{sec:model_selection}
 
 \begin{table}
 \centering
+\caption{Overview of Preprocessing Techniques and Models}
 \begin{tabularx}{\columnwidth}{>{\raggedright\arraybackslash}X}
 \toprule
 \textbf{Normalization / Scaling:} \\
@@ -84,7 +85,6 @@ \subsection{Model and Preprocessing Selection}\label{sec:model_selection}
 \quad Artificial Neural Networks \\
 \quad Convolutional Neural Networks \\\bottomrule
 \end{tabularx}
-\caption{Overview of Preprocessing Techniques and Models}
 \label{tab:preprocessing-models}
 \end{table}
 
diff --git a/report_thesis/src/sections/results/oxide_comparison_table.tex b/report_thesis/src/sections/results/oxide_comparison_table.tex
index 534dac55..016f2607 100644
--- a/report_thesis/src/sections/results/oxide_comparison_table.tex
+++ b/report_thesis/src/sections/results/oxide_comparison_table.tex
@@ -1,5 +1,6 @@
 \begin{table*}
     \centering
+    \caption{Comparison of different scalers across the eight major oxides.}
     \begin{tabular}{lccccccccc}
         \toprule
         \textbf{Oxide} & \texttt{MaxAbsScaler} & \texttt{MinMaxScaler} & \texttt{Norm3Scaler} & \texttt{RobustScaler} & \texttt{StandardScaler} \\
@@ -15,13 +16,13 @@
         Total across oxides      & 2458 & 2855 & 5090 & 3167 & 2373 \\
         \bottomrule
     \end{tabular}
-    \caption{Comparison of different scalers across the eight major oxides.}
     \label{tab:scalers_comparison}
 \end{table*}
 
 
 \begin{table*}
     \centering
+    \caption{Comparison of different PCA types across the eight major oxides.}
     \begin{tabular}{lccccccccc}
         \toprule
         \textbf{Oxide} & \texttt{None} & \texttt{KernelPCA} & \texttt{PCA} \\
@@ -37,13 +38,13 @@
         Total across oxides      & 9419  & 3368 & 3156 \\
         \bottomrule
     \end{tabular}
-    \caption{Comparison of different PCA types across the eight major oxides.}
     \label{tab:pca_comparison}
 \end{table*}
 
 
 \begin{table*}
     \centering
+    \caption{Comparison of different transformers across the eight major oxides.}
     \begin{tabular}{lccccccccc}
         \toprule
         \textbf{Oxide} & \texttt{None} & \texttt{PowerTransformer} & \texttt{QuantileTransformer} \\
@@ -59,6 +60,5 @@
         Total across oxides      & 4956 & 5277 & 5710 \\
         \bottomrule
     \end{tabular}
-    \caption{Comparison of different transformers across the eight major oxides.}
     \label{tab:transformers_comparison}
 \end{table*}
\ No newline at end of file

From b5f82f710442570d470d32863b67382c1e483183 Mon Sep 17 00:00:00 2001
From: Pattrigue <patrick@gamehouse.dk>
Date: Wed, 12 Jun 2024 16:36:28 +0200
Subject: [PATCH 2/3] add missing hlines

---
 .../inital_experiments/best_model_occurrences_table.tex          | 1 +
 .../experiments/inital_experiments/best_results_table.tex        | 1 +
 2 files changed, 2 insertions(+)

diff --git a/report_thesis/src/sections/experiments/inital_experiments/best_model_occurrences_table.tex b/report_thesis/src/sections/experiments/inital_experiments/best_model_occurrences_table.tex
index bb17cf1e..5e7588d3 100644
--- a/report_thesis/src/sections/experiments/inital_experiments/best_model_occurrences_table.tex
+++ b/report_thesis/src/sections/experiments/inital_experiments/best_model_occurrences_table.tex
@@ -8,5 +8,6 @@
 \gls{pls} & 4 \\
 \gls{gbr} & 3 \\
 \gls{ngboost} & 2 \\
+\hline
 \end{tabular}
 \label{tab:best_model_occurrences}
diff --git a/report_thesis/src/sections/experiments/inital_experiments/best_results_table.tex b/report_thesis/src/sections/experiments/inital_experiments/best_results_table.tex
index 51c6ac5a..28f6aa64 100644
--- a/report_thesis/src/sections/experiments/inital_experiments/best_results_table.tex
+++ b/report_thesis/src/sections/experiments/inital_experiments/best_results_table.tex
@@ -9,5 +9,6 @@
 $\ce{CaO}$ & 1.626 (\gls{svr}) & 1.467 (\gls{xgboost}) & 1.594 (\gls{svr}) & 1.457 (\gls{xgboost}) \\
 $\ce{Na2O}$ & 0.387 (\gls{xgboost}) & 0.908 (\gls{pls}) & 0.387 (\gls{xgboost}) & 0.906 (\gls{pls}) \\
 $\ce{K2O}$ & 0.524 (\gls{rf}) & 0.609 (\gls{gbr}) & 0.476 (\gls{rf}) & 0.610 (\gls{gbr}) \\
+\hline
 \end{tabular}%
 \label{tab:best_results}

From 9c39fe4cb811f86e07635588d338ec1b32f67b2b Mon Sep 17 00:00:00 2001
From: Pattrigue <patrick@gamehouse.dk>
Date: Wed, 12 Jun 2024 16:39:19 +0200
Subject: [PATCH 3/3] fix periods

---
 baseline/experiment_analysis/experiment_analysis.ipynb        | 2 +-
 report_thesis/src/sections/appendix/index.tex                 | 4 ++--
 report_thesis/src/sections/appendix/tables/Al2O3_overview.tex | 2 +-
 report_thesis/src/sections/appendix/tables/CaO_overview.tex   | 2 +-
 report_thesis/src/sections/appendix/tables/FeOT_overview.tex  | 2 +-
 report_thesis/src/sections/appendix/tables/K2O_overview.tex   | 2 +-
 report_thesis/src/sections/appendix/tables/MgO_overview.tex   | 2 +-
 report_thesis/src/sections/appendix/tables/Na2O_overview.tex  | 2 +-
 report_thesis/src/sections/appendix/tables/SiO2_overview.tex  | 2 +-
 report_thesis/src/sections/appendix/tables/TiO2_overview.tex  | 2 +-
 report_thesis/src/sections/background/data_overview.tex       | 2 +-
 report_thesis/src/sections/experiments/data_preparation.tex   | 2 +-
 report_thesis/src/sections/introduction.tex                   | 2 +-
 .../src/sections/proposed_approach/model_selection.tex        | 2 +-
 14 files changed, 15 insertions(+), 15 deletions(-)

diff --git a/baseline/experiment_analysis/experiment_analysis.ipynb b/baseline/experiment_analysis/experiment_analysis.ipynb
index 1abdcaa4..d58b7cdb 100644
--- a/baseline/experiment_analysis/experiment_analysis.ipynb
+++ b/baseline/experiment_analysis/experiment_analysis.ipynb
@@ -2380,7 +2380,7 @@
     "    with open(path, \"w\") as file:\n",
     "        file.write(\"\\\\begin{table}[!htb]\\n\")\n",
     "        file.write(\"\\\\centering\\n\")\n",
-    "        file.write(\"\\\\caption{Overview of model types for \\\\ce{\" + oxide_name + \"} oxide}\\n\")\n",
+    "        file.write(\"\\\\caption{Overview of model types for \\\\ce{\" + oxide_name + \"} oxide}.\\n\")\n",
     "        file.write(latex_table)\n",
     "        file.write(\"\\\\label{tab:\" + oxide + \"_overview}\\n\")\n",
     "        file.write(\"\\\\end{table}\\n\")\n"
diff --git a/report_thesis/src/sections/appendix/index.tex b/report_thesis/src/sections/appendix/index.tex
index 7b88fa86..f8671376 100644
--- a/report_thesis/src/sections/appendix/index.tex
+++ b/report_thesis/src/sections/appendix/index.tex
@@ -173,7 +173,7 @@ \subsection{Initial Experiment: Model Hyperparameters}\label{subsec:initial_expe
     \multicolumn{3}{l}{\textbf{Learning Rate:} 0.001} \\
     \bottomrule
   \end{tabular}
-  \caption{Summary of the Neural Network Architecture}
+  \caption{Summary of the \gls{ann} architecture.}
   \label{tab:nn_architecture}
 \end{table}
 
@@ -181,7 +181,7 @@ \subsection{Initial Experiment: Model Hyperparameters}\label{subsec:initial_expe
 
 \begin{table}[!htb]
   \centering
-  \caption{Summary of the Convolutional Neural Network Architecture}
+  \caption{Summary of the \gls{cnn} architecture.}
   \begin{tabular}{lll}
     \toprule
     \textbf{Layer} & \textbf{Output Shape} & \textbf{Hyperparameter} \\ \midrule
diff --git a/report_thesis/src/sections/appendix/tables/Al2O3_overview.tex b/report_thesis/src/sections/appendix/tables/Al2O3_overview.tex
index 02b15773..2b3650fc 100644
--- a/report_thesis/src/sections/appendix/tables/Al2O3_overview.tex
+++ b/report_thesis/src/sections/appendix/tables/Al2O3_overview.tex
@@ -1,6 +1,6 @@
 \begin{table}[!htb]
 \centering
-\caption{Overview of model types for \ce{Al2O3} oxide}
+\caption{Overview of model types for \ce{Al2O3} oxide.}
 \begin{tabular}{llllllll}
 \toprule
 \ce{Al2O3} & Model Type & Transformer Type & PCA Type & Scaler Type & \gls{rmsecv} & Std. dev. CV & \gls{rmsep} \\
diff --git a/report_thesis/src/sections/appendix/tables/CaO_overview.tex b/report_thesis/src/sections/appendix/tables/CaO_overview.tex
index d537c1dc..2683a1c3 100644
--- a/report_thesis/src/sections/appendix/tables/CaO_overview.tex
+++ b/report_thesis/src/sections/appendix/tables/CaO_overview.tex
@@ -1,6 +1,6 @@
 \begin{table}[!htb]
 \centering
-\caption{Overview of model types for \ce{CaO} oxide}
+\caption{Overview of model types for \ce{CaO} oxide.}
 \begin{tabular}{llllllll}
 \toprule
 \ce{CaO} & Model Type & Transformer Type & PCA Type & Scaler Type & \gls{rmsecv} & Std. dev. CV & \gls{rmsep} \\
diff --git a/report_thesis/src/sections/appendix/tables/FeOT_overview.tex b/report_thesis/src/sections/appendix/tables/FeOT_overview.tex
index 61c0b907..2e3710b7 100644
--- a/report_thesis/src/sections/appendix/tables/FeOT_overview.tex
+++ b/report_thesis/src/sections/appendix/tables/FeOT_overview.tex
@@ -1,6 +1,6 @@
 \begin{table}[!htb]
 \centering
-\caption{Overview of model types for \ce{FeO_T} oxide}
+\caption{Overview of model types for \ce{FeO_T} oxide.}
 \begin{tabular}{llllllll}
 \toprule
 \ce{FeO_T} & Model Type & Transformer Type & PCA Type & Scaler Type & \gls{rmsecv} & Std. dev. CV & \gls{rmsep} \\
diff --git a/report_thesis/src/sections/appendix/tables/K2O_overview.tex b/report_thesis/src/sections/appendix/tables/K2O_overview.tex
index d27e17c3..2bbb3f70 100644
--- a/report_thesis/src/sections/appendix/tables/K2O_overview.tex
+++ b/report_thesis/src/sections/appendix/tables/K2O_overview.tex
@@ -1,6 +1,6 @@
 \begin{table}[!htb]
 \centering
-\caption{Overview of model types for \ce{K2O} oxide}
+\caption{Overview of model types for \ce{K2O} oxide.}
 \begin{tabular}{llllllll}
 \toprule
 \ce{K2O} & Model Type & Transformer Type & PCA Type & Scaler Type & \gls{rmsecv} & Std. dev. CV & \gls{rmsep} \\
diff --git a/report_thesis/src/sections/appendix/tables/MgO_overview.tex b/report_thesis/src/sections/appendix/tables/MgO_overview.tex
index 5d75916a..c61cf8be 100644
--- a/report_thesis/src/sections/appendix/tables/MgO_overview.tex
+++ b/report_thesis/src/sections/appendix/tables/MgO_overview.tex
@@ -1,6 +1,6 @@
 \begin{table}[!htb]
 \centering
-\caption{Overview of model types for \ce{MgO} oxide}
+\caption{Overview of model types for \ce{MgO} oxide.}
 \begin{tabular}{llllllll}
 \toprule
 \ce{MgO} & Model Type & Transformer Type & PCA Type & Scaler Type & \gls{rmsecv} & Std. dev. CV & \gls{rmsep} \\
diff --git a/report_thesis/src/sections/appendix/tables/Na2O_overview.tex b/report_thesis/src/sections/appendix/tables/Na2O_overview.tex
index 9c480f27..cab6458b 100644
--- a/report_thesis/src/sections/appendix/tables/Na2O_overview.tex
+++ b/report_thesis/src/sections/appendix/tables/Na2O_overview.tex
@@ -1,6 +1,6 @@
 \begin{table}[!htb]
 \centering
-\caption{Overview of model types for \ce{Na2O} oxide}
+\caption{Overview of model types for \ce{Na2O} oxide.}
 \begin{tabular}{llllllll}
 \toprule
 \ce{Na2O} & Model Type & Transformer Type & PCA Type & Scaler Type & \gls{rmsecv} & Std. dev. CV & \gls{rmsep} \\
diff --git a/report_thesis/src/sections/appendix/tables/SiO2_overview.tex b/report_thesis/src/sections/appendix/tables/SiO2_overview.tex
index d5bde400..8df95e56 100644
--- a/report_thesis/src/sections/appendix/tables/SiO2_overview.tex
+++ b/report_thesis/src/sections/appendix/tables/SiO2_overview.tex
@@ -1,6 +1,6 @@
 \begin{table}[!htb]
 \centering
-\caption{Overview of model types for \ce{SiO2} oxide}
+\caption{Overview of model types for \ce{SiO2} oxide.}
 \begin{tabular}{llllllll}
 \toprule
 \ce{SiO2} & Model Type & Transformer Type & PCA Type & Scaler Type & \gls{rmsecv} & Std. dev. CV & \gls{rmsep} \\
diff --git a/report_thesis/src/sections/appendix/tables/TiO2_overview.tex b/report_thesis/src/sections/appendix/tables/TiO2_overview.tex
index eb5e40fe..55ea01e9 100644
--- a/report_thesis/src/sections/appendix/tables/TiO2_overview.tex
+++ b/report_thesis/src/sections/appendix/tables/TiO2_overview.tex
@@ -1,6 +1,6 @@
 \begin{table}[!htb]
 \centering
-\caption{Overview of model types for \ce{TiO2} oxide}
+\caption{Overview of model types for \ce{TiO2} oxide.}
 \begin{tabular}{llllllll}
 \toprule
 \ce{TiO2} & Model Type & Transformer Type & PCA Type & Scaler Type & \gls{rmsecv} & Std. dev. CV & \gls{rmsep} \\
diff --git a/report_thesis/src/sections/background/data_overview.tex b/report_thesis/src/sections/background/data_overview.tex
index d30d5bc0..81eb09c5 100644
--- a/report_thesis/src/sections/background/data_overview.tex
+++ b/report_thesis/src/sections/background/data_overview.tex
@@ -5,7 +5,7 @@ \subsection{Data Overview}\label{sec:data-overview}
 
 \begin{table*}
 \centering
-\caption{Example of CCS data for a single location (from \citet{p9_paper})}
+\caption{Example of CCS data for a single location (from \citet{p9_paper}).}
 \begin{tabular}{llllllll}
 \toprule
      wave &         shot1 &         shot2 &  $\cdots$ &        shot49 &       shot50  & median        & mean          \\
diff --git a/report_thesis/src/sections/experiments/data_preparation.tex b/report_thesis/src/sections/experiments/data_preparation.tex
index 4beba7d8..420b6728 100644
--- a/report_thesis/src/sections/experiments/data_preparation.tex
+++ b/report_thesis/src/sections/experiments/data_preparation.tex
@@ -27,7 +27,7 @@ \subsection{Data Preparation}\label{sec:data-preparation}
 
 \begin{table*}
 \centering
-\caption{Excerpt from the composition dataset (from \citet{p9_paper})}
+\caption{Excerpt from the composition dataset (from \citet{p9_paper}).}
 \begin{tabular}{lllllllllllll}
 \toprule
      Target & Spectrum Name & Sample Name & \ce{SiO2} & \ce{TiO2} & \ce{Al2O3} & \ce{FeO_T} & \ce{MnO} & \ce{MgO} & \ce{CaO} & \ce{Na2O} & \ce{K2O} & \ce{MOC total} \\
diff --git a/report_thesis/src/sections/introduction.tex b/report_thesis/src/sections/introduction.tex
index cf2df94b..9f9f9e31 100644
--- a/report_thesis/src/sections/introduction.tex
+++ b/report_thesis/src/sections/introduction.tex
@@ -55,7 +55,7 @@ \section{Introduction}\label{sec:introduction}
 
 \begin{table}
 \centering
-\caption{Table of Terms}
+\caption{Table of terminology.}
 \begin{tabularx}{\columnwidth}{lX} % l for left, X for the cell that should be wrapped
 \toprule
 Term & Definition \\
diff --git a/report_thesis/src/sections/proposed_approach/model_selection.tex b/report_thesis/src/sections/proposed_approach/model_selection.tex
index 66e9b2d9..480f2ab9 100644
--- a/report_thesis/src/sections/proposed_approach/model_selection.tex
+++ b/report_thesis/src/sections/proposed_approach/model_selection.tex
@@ -46,7 +46,7 @@ \subsection{Model and Preprocessing Selection}\label{sec:model_selection}
 
 \begin{table}
 \centering
-\caption{Overview of Preprocessing Techniques and Models}
+\caption{Overview of preprocessing techniques and models.}
 \begin{tabularx}{\columnwidth}{>{\raggedright\arraybackslash}X}
 \toprule
 \textbf{Normalization / Scaling:} \\