diff --git a/docs/releasehistory.rst b/docs/releasehistory.rst index c580c78ec..e145ed28a 100644 --- a/docs/releasehistory.rst +++ b/docs/releasehistory.rst @@ -8,6 +8,10 @@ New features ------------ - Added support in ``AbsoluteAlchemicalFactory`` for handling multiple independent alchemical regions (`#438 `_). +Bugfixes +-------- +- The multistate samplers now issue experimental API warnings via ``logger.warn()`` rather than ```warnings.warn()`` (`#446 `_) + 0.18.3 - Storage enhancements and bugfixes ========================================== diff --git a/openmmtools/multistate/mixing/_mix_replicas.c b/openmmtools/multistate/mixing/_mix_replicas.c index f4edbde40..ffd0c3578 100644 --- a/openmmtools/multistate/mixing/_mix_replicas.c +++ b/openmmtools/multistate/mixing/_mix_replicas.c @@ -1,4 +1,4 @@ -/* Generated by Cython 0.29.4 */ +/* Generated by Cython 0.29.13 */ /* BEGIN: Cython Metadata { @@ -20,8 +20,8 @@ END: Cython Metadata */ #elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03030000) #error Cython requires Python 2.6+ or Python 3.3+. #else -#define CYTHON_ABI "0_29_4" -#define CYTHON_HEX_VERSION 0x001D04F0 +#define CYTHON_ABI "0_29_13" +#define CYTHON_HEX_VERSION 0x001D0DF0 #define CYTHON_FUTURE_DIVISION 0 #include #ifndef offsetof @@ -323,8 +323,13 @@ END: Cython Metadata */ #define __Pyx_DefaultClassType PyClass_Type #else #define __Pyx_BUILTIN_MODULE_NAME "builtins" +#if PY_VERSION_HEX >= 0x030800A4 && PY_VERSION_HEX < 0x030800B2 + #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ + PyCode_New(a, 0, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) +#else #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) +#endif #define __Pyx_DefaultClassType PyType_Type #endif #ifndef Py_TPFLAGS_CHECKTYPES @@ -359,26 +364,6 @@ END: Cython Metadata */ #else #define __Pyx_PyFastCFunction_Check(func) 0 #endif -#if CYTHON_USE_DICT_VERSIONS -#define __PYX_GET_DICT_VERSION(dict) (((PyDictObject*)(dict))->ma_version_tag) -#define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var)\ - (version_var) = __PYX_GET_DICT_VERSION(dict);\ - (cache_var) = (value); -#define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP) {\ - static PY_UINT64_T __pyx_dict_version = 0;\ - static PyObject *__pyx_dict_cached_value = NULL;\ - if (likely(__PYX_GET_DICT_VERSION(DICT) == __pyx_dict_version)) {\ - (VAR) = __pyx_dict_cached_value;\ - } else {\ - (VAR) = __pyx_dict_cached_value = (LOOKUP);\ - __pyx_dict_version = __PYX_GET_DICT_VERSION(DICT);\ - }\ - } -#else -#define __PYX_GET_DICT_VERSION(dict) (0) -#define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var) -#define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP) (VAR) = (LOOKUP); -#endif #if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Malloc) #define PyObject_Malloc(s) PyMem_Malloc(s) #define PyObject_Free(p) PyMem_Free(p) @@ -640,7 +625,8 @@ typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* enc const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry; #define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0 -#define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT 0 +#define __PYX_DEFAULT_STRING_ENCODING_IS_UTF8 0 +#define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT (PY_MAJOR_VERSION >= 3 && __PYX_DEFAULT_STRING_ENCODING_IS_UTF8) #define __PYX_DEFAULT_STRING_ENCODING "" #define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString #define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize @@ -1014,7 +1000,7 @@ struct __pyx_memoryview_obj { }; -/* "View.MemoryView":961 +/* "View.MemoryView":965 * * @cname('__pyx_memoryviewslice') * cdef class _memoryviewslice(memoryview): # <<<<<<<<<<<<<< @@ -1065,7 +1051,7 @@ struct __pyx_vtabstruct_memoryview { static struct __pyx_vtabstruct_memoryview *__pyx_vtabptr_memoryview; -/* "View.MemoryView":961 +/* "View.MemoryView":965 * * @cname('__pyx_memoryviewslice') * cdef class _memoryviewslice(memoryview): # <<<<<<<<<<<<<< @@ -1257,7 +1243,7 @@ static CYTHON_INLINE PyObject *__Pyx_PyCFunction_FastCall(PyObject *func, PyObje #define __Pyx_PyFunction_FastCall(func, args, nargs)\ __Pyx_PyFunction_FastCallDict((func), (args), (nargs), NULL) #if 1 || PY_VERSION_HEX < 0x030600B1 -static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, int nargs, PyObject *kwargs); +static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_ssize_t nargs, PyObject *kwargs); #else #define __Pyx_PyFunction_FastCallDict(func, args, nargs, kwargs) _PyFunction_FastCallDict(func, args, nargs, kwargs) #endif @@ -1374,6 +1360,32 @@ static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tsta /* GetAttr3.proto */ static CYTHON_INLINE PyObject *__Pyx_GetAttr3(PyObject *, PyObject *, PyObject *); +/* PyDictVersioning.proto */ +#if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_TYPE_SLOTS +#define __PYX_DICT_VERSION_INIT ((PY_UINT64_T) -1) +#define __PYX_GET_DICT_VERSION(dict) (((PyDictObject*)(dict))->ma_version_tag) +#define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var)\ + (version_var) = __PYX_GET_DICT_VERSION(dict);\ + (cache_var) = (value); +#define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP) {\ + static PY_UINT64_T __pyx_dict_version = 0;\ + static PyObject *__pyx_dict_cached_value = NULL;\ + if (likely(__PYX_GET_DICT_VERSION(DICT) == __pyx_dict_version)) {\ + (VAR) = __pyx_dict_cached_value;\ + } else {\ + (VAR) = __pyx_dict_cached_value = (LOOKUP);\ + __pyx_dict_version = __PYX_GET_DICT_VERSION(DICT);\ + }\ +} +static CYTHON_INLINE PY_UINT64_T __Pyx_get_tp_dict_version(PyObject *obj); +static CYTHON_INLINE PY_UINT64_T __Pyx_get_object_dict_version(PyObject *obj); +static CYTHON_INLINE int __Pyx_object_dict_version_matches(PyObject* obj, PY_UINT64_T tp_dict_version, PY_UINT64_T obj_dict_version); +#else +#define __PYX_GET_DICT_VERSION(dict) (0) +#define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var) +#define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP) (VAR) = (LOOKUP); +#endif + /* GetModuleGlobalName.proto */ #if CYTHON_USE_DICT_VERSIONS #define __Pyx_GetModuleGlobalName(var, name) {\ @@ -5201,7 +5213,7 @@ static void __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__deal * def __dealloc__(memoryview self): * if self.obj is not None: # <<<<<<<<<<<<<< * __Pyx_ReleaseBuffer(&self.view) - * + * elif (<__pyx_buffer *> &self.view).obj == Py_None: */ __pyx_t_1 = (__pyx_v_self->obj != Py_None); __pyx_t_2 = (__pyx_t_1 != 0); @@ -5211,8 +5223,8 @@ static void __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__deal * def __dealloc__(memoryview self): * if self.obj is not None: * __Pyx_ReleaseBuffer(&self.view) # <<<<<<<<<<<<<< + * elif (<__pyx_buffer *> &self.view).obj == Py_None: * - * cdef int i */ __Pyx_ReleaseBuffer((&__pyx_v_self->view)); @@ -5221,11 +5233,50 @@ static void __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__deal * def __dealloc__(memoryview self): * if self.obj is not None: # <<<<<<<<<<<<<< * __Pyx_ReleaseBuffer(&self.view) + * elif (<__pyx_buffer *> &self.view).obj == Py_None: + */ + goto __pyx_L3; + } + + /* "View.MemoryView":375 + * if self.obj is not None: + * __Pyx_ReleaseBuffer(&self.view) + * elif (<__pyx_buffer *> &self.view).obj == Py_None: # <<<<<<<<<<<<<< + * + * (<__pyx_buffer *> &self.view).obj = NULL + */ + __pyx_t_2 = ((((Py_buffer *)(&__pyx_v_self->view))->obj == Py_None) != 0); + if (__pyx_t_2) { + + /* "View.MemoryView":377 + * elif (<__pyx_buffer *> &self.view).obj == Py_None: + * + * (<__pyx_buffer *> &self.view).obj = NULL # <<<<<<<<<<<<<< + * Py_DECREF(Py_None) * + */ + ((Py_buffer *)(&__pyx_v_self->view))->obj = NULL; + + /* "View.MemoryView":378 + * + * (<__pyx_buffer *> &self.view).obj = NULL + * Py_DECREF(Py_None) # <<<<<<<<<<<<<< + * + * cdef int i + */ + Py_DECREF(Py_None); + + /* "View.MemoryView":375 + * if self.obj is not None: + * __Pyx_ReleaseBuffer(&self.view) + * elif (<__pyx_buffer *> &self.view).obj == Py_None: # <<<<<<<<<<<<<< + * + * (<__pyx_buffer *> &self.view).obj = NULL */ } + __pyx_L3:; - /* "View.MemoryView":378 + /* "View.MemoryView":382 * cdef int i * global __pyx_memoryview_thread_locks_used * if self.lock != NULL: # <<<<<<<<<<<<<< @@ -5235,7 +5286,7 @@ static void __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__deal __pyx_t_2 = ((__pyx_v_self->lock != NULL) != 0); if (__pyx_t_2) { - /* "View.MemoryView":379 + /* "View.MemoryView":383 * global __pyx_memoryview_thread_locks_used * if self.lock != NULL: * for i in range(__pyx_memoryview_thread_locks_used): # <<<<<<<<<<<<<< @@ -5247,7 +5298,7 @@ static void __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__deal for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) { __pyx_v_i = __pyx_t_5; - /* "View.MemoryView":380 + /* "View.MemoryView":384 * if self.lock != NULL: * for i in range(__pyx_memoryview_thread_locks_used): * if __pyx_memoryview_thread_locks[i] is self.lock: # <<<<<<<<<<<<<< @@ -5257,7 +5308,7 @@ static void __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__deal __pyx_t_2 = (((__pyx_memoryview_thread_locks[__pyx_v_i]) == __pyx_v_self->lock) != 0); if (__pyx_t_2) { - /* "View.MemoryView":381 + /* "View.MemoryView":385 * for i in range(__pyx_memoryview_thread_locks_used): * if __pyx_memoryview_thread_locks[i] is self.lock: * __pyx_memoryview_thread_locks_used -= 1 # <<<<<<<<<<<<<< @@ -5266,7 +5317,7 @@ static void __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__deal */ __pyx_memoryview_thread_locks_used = (__pyx_memoryview_thread_locks_used - 1); - /* "View.MemoryView":382 + /* "View.MemoryView":386 * if __pyx_memoryview_thread_locks[i] is self.lock: * __pyx_memoryview_thread_locks_used -= 1 * if i != __pyx_memoryview_thread_locks_used: # <<<<<<<<<<<<<< @@ -5276,7 +5327,7 @@ static void __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__deal __pyx_t_2 = ((__pyx_v_i != __pyx_memoryview_thread_locks_used) != 0); if (__pyx_t_2) { - /* "View.MemoryView":384 + /* "View.MemoryView":388 * if i != __pyx_memoryview_thread_locks_used: * __pyx_memoryview_thread_locks[i], __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used] = ( * __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used], __pyx_memoryview_thread_locks[i]) # <<<<<<<<<<<<<< @@ -5286,7 +5337,7 @@ static void __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__deal __pyx_t_6 = (__pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used]); __pyx_t_7 = (__pyx_memoryview_thread_locks[__pyx_v_i]); - /* "View.MemoryView":383 + /* "View.MemoryView":387 * __pyx_memoryview_thread_locks_used -= 1 * if i != __pyx_memoryview_thread_locks_used: * __pyx_memoryview_thread_locks[i], __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used] = ( # <<<<<<<<<<<<<< @@ -5296,7 +5347,7 @@ static void __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__deal (__pyx_memoryview_thread_locks[__pyx_v_i]) = __pyx_t_6; (__pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used]) = __pyx_t_7; - /* "View.MemoryView":382 + /* "View.MemoryView":386 * if __pyx_memoryview_thread_locks[i] is self.lock: * __pyx_memoryview_thread_locks_used -= 1 * if i != __pyx_memoryview_thread_locks_used: # <<<<<<<<<<<<<< @@ -5305,7 +5356,7 @@ static void __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__deal */ } - /* "View.MemoryView":385 + /* "View.MemoryView":389 * __pyx_memoryview_thread_locks[i], __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used] = ( * __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used], __pyx_memoryview_thread_locks[i]) * break # <<<<<<<<<<<<<< @@ -5314,7 +5365,7 @@ static void __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__deal */ goto __pyx_L6_break; - /* "View.MemoryView":380 + /* "View.MemoryView":384 * if self.lock != NULL: * for i in range(__pyx_memoryview_thread_locks_used): * if __pyx_memoryview_thread_locks[i] is self.lock: # <<<<<<<<<<<<<< @@ -5325,7 +5376,7 @@ static void __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__deal } /*else*/ { - /* "View.MemoryView":387 + /* "View.MemoryView":391 * break * else: * PyThread_free_lock(self.lock) # <<<<<<<<<<<<<< @@ -5336,7 +5387,7 @@ static void __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__deal } __pyx_L6_break:; - /* "View.MemoryView":378 + /* "View.MemoryView":382 * cdef int i * global __pyx_memoryview_thread_locks_used * if self.lock != NULL: # <<<<<<<<<<<<<< @@ -5357,7 +5408,7 @@ static void __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__deal __Pyx_RefNannyFinishContext(); } -/* "View.MemoryView":389 +/* "View.MemoryView":393 * PyThread_free_lock(self.lock) * * cdef char *get_item_pointer(memoryview self, object index) except NULL: # <<<<<<<<<<<<<< @@ -5380,7 +5431,7 @@ static char *__pyx_memoryview_get_item_pointer(struct __pyx_memoryview_obj *__py char *__pyx_t_7; 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#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS - __pyx_t_5 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_3); __Pyx_INCREF(__pyx_t_5); __pyx_t_3++; if (unlikely(0 < 0)) __PYX_ERR(1, 393, __pyx_L1_error) + __pyx_t_5 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_3); __Pyx_INCREF(__pyx_t_5); __pyx_t_3++; if (unlikely(0 < 0)) __PYX_ERR(1, 397, __pyx_L1_error) #else - __pyx_t_5 = PySequence_ITEM(__pyx_t_2, __pyx_t_3); __pyx_t_3++; if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 393, __pyx_L1_error) + __pyx_t_5 = PySequence_ITEM(__pyx_t_2, __pyx_t_3); __pyx_t_3++; if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 397, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_5); #endif } @@ -5430,7 +5481,7 @@ static char *__pyx_memoryview_get_item_pointer(struct __pyx_memoryview_obj *__py PyObject* exc_type = PyErr_Occurred(); if (exc_type) { if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear(); - else __PYX_ERR(1, 393, __pyx_L1_error) + else __PYX_ERR(1, 397, __pyx_L1_error) } break; } @@ -5441,18 +5492,18 @@ static char *__pyx_memoryview_get_item_pointer(struct __pyx_memoryview_obj *__py __pyx_v_dim = __pyx_t_1; __pyx_t_1 = (__pyx_t_1 + 1); - /* "View.MemoryView":394 + /* "View.MemoryView":398 * * for dim, idx in enumerate(index): * itemp = pybuffer_index(&self.view, itemp, idx, dim) # <<<<<<<<<<<<<< * * return itemp */ - __pyx_t_6 = __Pyx_PyIndex_AsSsize_t(__pyx_v_idx); if (unlikely((__pyx_t_6 == (Py_ssize_t)-1) && PyErr_Occurred())) __PYX_ERR(1, 394, __pyx_L1_error) - __pyx_t_7 = __pyx_pybuffer_index((&__pyx_v_self->view), __pyx_v_itemp, __pyx_t_6, __pyx_v_dim); if (unlikely(__pyx_t_7 == ((char *)NULL))) __PYX_ERR(1, 394, __pyx_L1_error) + __pyx_t_6 = __Pyx_PyIndex_AsSsize_t(__pyx_v_idx); if (unlikely((__pyx_t_6 == (Py_ssize_t)-1) && PyErr_Occurred())) __PYX_ERR(1, 398, __pyx_L1_error) + __pyx_t_7 = __pyx_pybuffer_index((&__pyx_v_self->view), __pyx_v_itemp, __pyx_t_6, __pyx_v_dim); if (unlikely(__pyx_t_7 == ((char *)NULL))) __PYX_ERR(1, 398, __pyx_L1_error) __pyx_v_itemp = __pyx_t_7; - /* "View.MemoryView":393 + /* "View.MemoryView":397 * cdef char *itemp = self.view.buf * * for dim, idx in enumerate(index): # <<<<<<<<<<<<<< @@ -5462,7 +5513,7 @@ static char *__pyx_memoryview_get_item_pointer(struct __pyx_memoryview_obj *__py } __Pyx_DECREF(__pyx_t_2); 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if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 431, __pyx_L4_error) + __pyx_t_7 = __Pyx_PyBool_FromLong(__pyx_v_self->dtype_is_object); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 435, __pyx_L4_error) __Pyx_GOTREF(__pyx_t_7); - /* "View.MemoryView":430 + /* "View.MemoryView":434 * if not isinstance(obj, memoryview): * try: * obj = memoryview(obj, self.flags & ~PyBUF_WRITABLE | PyBUF_ANY_CONTIGUOUS, # <<<<<<<<<<<<<< * self.dtype_is_object) * except TypeError: */ - __pyx_t_8 = PyTuple_New(3); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 430, __pyx_L4_error) + __pyx_t_8 = PyTuple_New(3); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 434, __pyx_L4_error) __Pyx_GOTREF(__pyx_t_8); __Pyx_INCREF(__pyx_v_obj); __Pyx_GIVEREF(__pyx_v_obj); @@ -5991,13 +6042,13 @@ static PyObject *__pyx_memoryview_is_slice(struct __pyx_memoryview_obj *__pyx_v_ PyTuple_SET_ITEM(__pyx_t_8, 2, __pyx_t_7); __pyx_t_6 = 0; __pyx_t_7 = 0; - __pyx_t_7 = __Pyx_PyObject_Call(((PyObject *)__pyx_memoryview_type), __pyx_t_8, NULL); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 430, __pyx_L4_error) + __pyx_t_7 = __Pyx_PyObject_Call(((PyObject *)__pyx_memoryview_type), __pyx_t_8, NULL); 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__Pyx_GOTREF(__pyx_t_8); __Pyx_GOTREF(__pyx_t_6); - /* "View.MemoryView":433 + /* "View.MemoryView":437 * self.dtype_is_object) * except TypeError: * return None # <<<<<<<<<<<<<< @@ -6046,7 +6097,7 @@ static PyObject *__pyx_memoryview_is_slice(struct __pyx_memoryview_obj *__pyx_v_ goto __pyx_L6_except_error; __pyx_L6_except_error:; - /* "View.MemoryView":429 + /* "View.MemoryView":433 * cdef is_slice(self, obj): * if not isinstance(obj, memoryview): * try: # <<<<<<<<<<<<<< @@ -6067,7 +6118,7 @@ static PyObject *__pyx_memoryview_is_slice(struct __pyx_memoryview_obj *__pyx_v_ __pyx_L9_try_end:; } - /* "View.MemoryView":428 + /* "View.MemoryView":432 * * cdef is_slice(self, obj): * if not isinstance(obj, memoryview): # <<<<<<<<<<<<<< @@ -6076,7 +6127,7 @@ static PyObject *__pyx_memoryview_is_slice(struct __pyx_memoryview_obj *__pyx_v_ */ } - /* "View.MemoryView":435 + /* "View.MemoryView":439 * return None * * return obj # <<<<<<<<<<<<<< @@ -6088,7 +6139,7 @@ static PyObject *__pyx_memoryview_is_slice(struct __pyx_memoryview_obj *__pyx_v_ __pyx_r = __pyx_v_obj; 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__pyx_t_1 = 0; - /* "View.MemoryView":441 + /* "View.MemoryView":445 * cdef __Pyx_memviewslice src_slice * * memoryview_copy_contents(get_slice_from_memview(src, &src_slice)[0], # <<<<<<<<<<<<<< * get_slice_from_memview(dst, &dst_slice)[0], * src.ndim, dst.ndim, self.dtype_is_object) */ - __pyx_t_4 = __pyx_memoryview_copy_contents((__pyx_memoryview_get_slice_from_memoryview(((struct __pyx_memoryview_obj *)__pyx_v_src), (&__pyx_v_src_slice))[0]), (__pyx_memoryview_get_slice_from_memoryview(((struct __pyx_memoryview_obj *)__pyx_v_dst), (&__pyx_v_dst_slice))[0]), __pyx_t_2, __pyx_t_3, __pyx_v_self->dtype_is_object); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(1, 441, __pyx_L1_error) + __pyx_t_4 = __pyx_memoryview_copy_contents((__pyx_memoryview_get_slice_from_memoryview(((struct __pyx_memoryview_obj *)__pyx_v_src), (&__pyx_v_src_slice))[0]), (__pyx_memoryview_get_slice_from_memoryview(((struct __pyx_memoryview_obj *)__pyx_v_dst), (&__pyx_v_dst_slice))[0]), __pyx_t_2, __pyx_t_3, __pyx_v_self->dtype_is_object); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(1, 445, __pyx_L1_error) - /* "View.MemoryView":437 + /* "View.MemoryView":441 * return obj * * cdef setitem_slice_assignment(self, dst, src): # <<<<<<<<<<<<<< @@ -6193,7 +6244,7 @@ static PyObject *__pyx_memoryview_setitem_slice_assignment(struct __pyx_memoryvi return __pyx_r; } -/* "View.MemoryView":445 +/* "View.MemoryView":449 * src.ndim, dst.ndim, self.dtype_is_object) * * cdef setitem_slice_assign_scalar(self, memoryview dst, value): # <<<<<<<<<<<<<< @@ -6222,7 +6273,7 @@ static PyObject *__pyx_memoryview_setitem_slice_assign_scalar(struct __pyx_memor PyObject *__pyx_t_11 = NULL; __Pyx_RefNannySetupContext("setitem_slice_assign_scalar", 0); - /* "View.MemoryView":447 + /* "View.MemoryView":451 * cdef setitem_slice_assign_scalar(self, memoryview dst, value): * cdef int array[128] * cdef void *tmp = NULL # <<<<<<<<<<<<<< @@ -6231,7 +6282,7 @@ static PyObject *__pyx_memoryview_setitem_slice_assign_scalar(struct __pyx_memor */ __pyx_v_tmp = NULL; 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if (__pyx_t_1) { - /* "View.MemoryView":524 + /* "View.MemoryView":528 * * if flags & PyBUF_STRIDES: * info.strides = self.view.strides # <<<<<<<<<<<<<< @@ -7188,7 +7239,7 @@ static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_8__getbu __pyx_t_4 = __pyx_v_self->view.strides; __pyx_v_info->strides = __pyx_t_4; - /* "View.MemoryView":523 + /* "View.MemoryView":527 * info.shape = NULL * * if flags & PyBUF_STRIDES: # <<<<<<<<<<<<<< @@ -7198,7 +7249,7 @@ static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_8__getbu goto __pyx_L7; } - /* "View.MemoryView":526 + /* "View.MemoryView":530 * info.strides = self.view.strides * else: * info.strides = NULL # <<<<<<<<<<<<<< @@ -7210,7 +7261,7 @@ static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_8__getbu } __pyx_L7:; - /* "View.MemoryView":528 + /* "View.MemoryView":532 * info.strides = NULL * * if flags & PyBUF_INDIRECT: # <<<<<<<<<<<<<< @@ -7220,7 +7271,7 @@ static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_8__getbu __pyx_t_1 = ((__pyx_v_flags & PyBUF_INDIRECT) != 0); 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- /* "View.MemoryView":774 + /* "View.MemoryView":778 * if isinstance(memview, _memoryviewslice): * return memoryview_fromslice(dst, new_ndim, * memviewsliceobj.to_object_func, # <<<<<<<<<<<<<< * memviewsliceobj.to_dtype_func, * memview.dtype_is_object) */ - if (unlikely(!__pyx_v_memviewsliceobj)) { __Pyx_RaiseUnboundLocalError("memviewsliceobj"); __PYX_ERR(1, 774, __pyx_L1_error) } + if (unlikely(!__pyx_v_memviewsliceobj)) { __Pyx_RaiseUnboundLocalError("memviewsliceobj"); __PYX_ERR(1, 778, __pyx_L1_error) } - /* "View.MemoryView":775 + /* "View.MemoryView":779 * return memoryview_fromslice(dst, new_ndim, * memviewsliceobj.to_object_func, * memviewsliceobj.to_dtype_func, # <<<<<<<<<<<<<< * memview.dtype_is_object) * else: */ - if (unlikely(!__pyx_v_memviewsliceobj)) { __Pyx_RaiseUnboundLocalError("memviewsliceobj"); __PYX_ERR(1, 775, __pyx_L1_error) } + if (unlikely(!__pyx_v_memviewsliceobj)) { __Pyx_RaiseUnboundLocalError("memviewsliceobj"); __PYX_ERR(1, 779, __pyx_L1_error) } - /* "View.MemoryView":773 + /* "View.MemoryView":777 * * if isinstance(memview, _memoryviewslice): * return memoryview_fromslice(dst, new_ndim, # <<<<<<<<<<<<<< * memviewsliceobj.to_object_func, * memviewsliceobj.to_dtype_func, */ - __pyx_t_3 = __pyx_memoryview_fromslice(__pyx_v_dst, __pyx_v_new_ndim, __pyx_v_memviewsliceobj->to_object_func, __pyx_v_memviewsliceobj->to_dtype_func, __pyx_v_memview->dtype_is_object); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 773, __pyx_L1_error) + __pyx_t_3 = __pyx_memoryview_fromslice(__pyx_v_dst, __pyx_v_new_ndim, __pyx_v_memviewsliceobj->to_object_func, __pyx_v_memviewsliceobj->to_dtype_func, __pyx_v_memview->dtype_is_object); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 777, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_3); - if (!(likely(((__pyx_t_3) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_3, __pyx_memoryview_type))))) __PYX_ERR(1, 773, __pyx_L1_error) + if (!(likely(((__pyx_t_3) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_3, __pyx_memoryview_type))))) __PYX_ERR(1, 777, __pyx_L1_error) __pyx_r = ((struct __pyx_memoryview_obj *)__pyx_t_3); __pyx_t_3 = 0; goto __pyx_L0; - /* "View.MemoryView":772 + /* "View.MemoryView":776 * new_ndim += 1 * * if isinstance(memview, _memoryviewslice): # <<<<<<<<<<<<<< @@ -10030,7 +10081,7 @@ static struct __pyx_memoryview_obj *__pyx_memview_slice(struct __pyx_memoryview_ */ } - /* "View.MemoryView":778 + /* "View.MemoryView":782 * memview.dtype_is_object) * else: * return memoryview_fromslice(dst, new_ndim, NULL, NULL, # <<<<<<<<<<<<<< @@ -10040,30 +10091,30 @@ static struct __pyx_memoryview_obj *__pyx_memview_slice(struct __pyx_memoryview_ /*else*/ { __Pyx_XDECREF(((PyObject *)__pyx_r)); - /* "View.MemoryView":779 + /* "View.MemoryView":783 * else: * return memoryview_fromslice(dst, new_ndim, NULL, NULL, * memview.dtype_is_object) # <<<<<<<<<<<<<< * * */ - __pyx_t_3 = __pyx_memoryview_fromslice(__pyx_v_dst, __pyx_v_new_ndim, NULL, NULL, __pyx_v_memview->dtype_is_object); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 778, __pyx_L1_error) + __pyx_t_3 = __pyx_memoryview_fromslice(__pyx_v_dst, __pyx_v_new_ndim, NULL, NULL, __pyx_v_memview->dtype_is_object); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 782, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_3); - /* "View.MemoryView":778 + /* "View.MemoryView":782 * memview.dtype_is_object) * else: * return memoryview_fromslice(dst, new_ndim, NULL, NULL, # <<<<<<<<<<<<<< * memview.dtype_is_object) * */ - if (!(likely(((__pyx_t_3) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_3, __pyx_memoryview_type))))) __PYX_ERR(1, 778, __pyx_L1_error) + if (!(likely(((__pyx_t_3) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_3, __pyx_memoryview_type))))) __PYX_ERR(1, 782, __pyx_L1_error) __pyx_r = ((struct __pyx_memoryview_obj *)__pyx_t_3); __pyx_t_3 = 0; goto __pyx_L0; } - /* "View.MemoryView":706 + /* "View.MemoryView":710 * * @cname('__pyx_memview_slice') * cdef memoryview memview_slice(memoryview memview, object indices): # <<<<<<<<<<<<<< @@ -10085,7 +10136,7 @@ static struct __pyx_memoryview_obj *__pyx_memview_slice(struct __pyx_memoryview_ return __pyx_r; } -/* "View.MemoryView":803 +/* "View.MemoryView":807 * * @cname('__pyx_memoryview_slice_memviewslice') * cdef int slice_memviewslice( # <<<<<<<<<<<<<< @@ -10101,7 +10152,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, int __pyx_t_2; int __pyx_t_3; - /* "View.MemoryView":823 + /* "View.MemoryView":827 * cdef bint negative_step * * if not is_slice: # <<<<<<<<<<<<<< @@ -10111,7 +10162,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, __pyx_t_1 = ((!(__pyx_v_is_slice != 0)) != 0); if (__pyx_t_1) { - /* "View.MemoryView":825 + /* "View.MemoryView":829 * if not is_slice: * * if start < 0: # <<<<<<<<<<<<<< @@ -10121,7 +10172,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, __pyx_t_1 = ((__pyx_v_start < 0) != 0); if (__pyx_t_1) { - /* "View.MemoryView":826 + /* "View.MemoryView":830 * * if start < 0: * start += shape # <<<<<<<<<<<<<< @@ -10130,7 +10181,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ __pyx_v_start = (__pyx_v_start + __pyx_v_shape); - /* "View.MemoryView":825 + /* "View.MemoryView":829 * if not is_slice: * * if start < 0: # <<<<<<<<<<<<<< @@ -10139,7 +10190,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ } - /* "View.MemoryView":827 + /* "View.MemoryView":831 * if start < 0: * start += shape * if not 0 <= start < shape: # <<<<<<<<<<<<<< @@ -10153,16 +10204,16 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, __pyx_t_2 = ((!(__pyx_t_1 != 0)) != 0); if (__pyx_t_2) { - /* "View.MemoryView":828 + /* "View.MemoryView":832 * start += shape * if not 0 <= start < shape: * _err_dim(IndexError, "Index out of bounds (axis %d)", dim) # <<<<<<<<<<<<<< * else: * */ - __pyx_t_3 = __pyx_memoryview_err_dim(__pyx_builtin_IndexError, ((char *)"Index out of bounds (axis %d)"), __pyx_v_dim); if (unlikely(__pyx_t_3 == ((int)-1))) __PYX_ERR(1, 828, __pyx_L1_error) + __pyx_t_3 = __pyx_memoryview_err_dim(__pyx_builtin_IndexError, ((char *)"Index out of bounds (axis %d)"), __pyx_v_dim); if (unlikely(__pyx_t_3 == ((int)-1))) __PYX_ERR(1, 832, __pyx_L1_error) - /* "View.MemoryView":827 + /* "View.MemoryView":831 * if start < 0: * start += shape * if not 0 <= start < shape: # <<<<<<<<<<<<<< @@ -10171,7 +10222,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ } - /* "View.MemoryView":823 + /* "View.MemoryView":827 * cdef bint negative_step * * if not is_slice: # <<<<<<<<<<<<<< @@ -10181,7 +10232,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, goto __pyx_L3; } - /* "View.MemoryView":831 + /* "View.MemoryView":835 * else: * * negative_step = have_step != 0 and step < 0 # <<<<<<<<<<<<<< @@ -10200,7 +10251,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, __pyx_L6_bool_binop_done:; __pyx_v_negative_step = __pyx_t_2; - /* "View.MemoryView":833 + /* "View.MemoryView":837 * negative_step = have_step != 0 and step < 0 * * if have_step and step == 0: # <<<<<<<<<<<<<< @@ -10218,16 +10269,16 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, __pyx_L9_bool_binop_done:; if (__pyx_t_2) { - /* "View.MemoryView":834 + /* "View.MemoryView":838 * * if have_step and step == 0: * _err_dim(ValueError, "Step may not be zero (axis %d)", dim) # <<<<<<<<<<<<<< * * */ - __pyx_t_3 = __pyx_memoryview_err_dim(__pyx_builtin_ValueError, ((char *)"Step may not be zero (axis %d)"), __pyx_v_dim); if (unlikely(__pyx_t_3 == ((int)-1))) __PYX_ERR(1, 834, __pyx_L1_error) + __pyx_t_3 = __pyx_memoryview_err_dim(__pyx_builtin_ValueError, ((char *)"Step may not be zero (axis %d)"), __pyx_v_dim); if (unlikely(__pyx_t_3 == ((int)-1))) __PYX_ERR(1, 838, __pyx_L1_error) - /* "View.MemoryView":833 + /* "View.MemoryView":837 * negative_step = have_step != 0 and step < 0 * * if have_step and step == 0: # <<<<<<<<<<<<<< @@ -10236,7 +10287,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ } - /* "View.MemoryView":837 + /* "View.MemoryView":841 * * * if have_start: # <<<<<<<<<<<<<< @@ -10246,7 +10297,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, __pyx_t_2 = (__pyx_v_have_start != 0); if (__pyx_t_2) { - /* "View.MemoryView":838 + /* "View.MemoryView":842 * * if have_start: * if start < 0: # <<<<<<<<<<<<<< @@ -10256,7 +10307,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, __pyx_t_2 = ((__pyx_v_start < 0) != 0); if (__pyx_t_2) { - /* "View.MemoryView":839 + /* "View.MemoryView":843 * if have_start: * if start < 0: * start += shape # <<<<<<<<<<<<<< @@ -10265,7 +10316,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ __pyx_v_start = (__pyx_v_start + __pyx_v_shape); - /* "View.MemoryView":840 + /* "View.MemoryView":844 * if start < 0: * start += shape * if start < 0: # <<<<<<<<<<<<<< @@ -10275,7 +10326,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, __pyx_t_2 = ((__pyx_v_start < 0) != 0); if (__pyx_t_2) { - /* "View.MemoryView":841 + /* "View.MemoryView":845 * start += shape * if start < 0: * start = 0 # <<<<<<<<<<<<<< @@ -10284,7 +10335,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ __pyx_v_start = 0; - /* "View.MemoryView":840 + /* "View.MemoryView":844 * if start < 0: * start += shape * if start < 0: # <<<<<<<<<<<<<< @@ -10293,7 +10344,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ } - /* "View.MemoryView":838 + /* "View.MemoryView":842 * * if have_start: * if start < 0: # <<<<<<<<<<<<<< @@ -10303,7 +10354,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, goto __pyx_L12; } - /* "View.MemoryView":842 + /* "View.MemoryView":846 * if start < 0: * start = 0 * elif start >= shape: # <<<<<<<<<<<<<< @@ -10313,7 +10364,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, __pyx_t_2 = ((__pyx_v_start >= __pyx_v_shape) != 0); if (__pyx_t_2) { - /* "View.MemoryView":843 + /* "View.MemoryView":847 * start = 0 * elif start >= shape: * if negative_step: # <<<<<<<<<<<<<< @@ -10323,7 +10374,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, __pyx_t_2 = (__pyx_v_negative_step != 0); if (__pyx_t_2) { - /* "View.MemoryView":844 + /* "View.MemoryView":848 * elif start >= shape: * if negative_step: * start = shape - 1 # <<<<<<<<<<<<<< @@ -10332,7 +10383,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ __pyx_v_start = (__pyx_v_shape - 1); - /* "View.MemoryView":843 + /* "View.MemoryView":847 * start = 0 * elif start >= shape: * if negative_step: # <<<<<<<<<<<<<< @@ -10342,7 +10393,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, goto __pyx_L14; } - /* "View.MemoryView":846 + /* "View.MemoryView":850 * start = shape - 1 * else: * start = shape # <<<<<<<<<<<<<< @@ -10354,7 +10405,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, } __pyx_L14:; - /* "View.MemoryView":842 + /* "View.MemoryView":846 * if start < 0: * start = 0 * elif start >= shape: # <<<<<<<<<<<<<< @@ -10364,7 +10415,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, } __pyx_L12:; - /* "View.MemoryView":837 + /* "View.MemoryView":841 * * * if have_start: # <<<<<<<<<<<<<< @@ -10374,7 +10425,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, goto __pyx_L11; } - /* "View.MemoryView":848 + /* "View.MemoryView":852 * start = shape * else: * if negative_step: # <<<<<<<<<<<<<< @@ -10385,7 +10436,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, __pyx_t_2 = (__pyx_v_negative_step != 0); if (__pyx_t_2) { - /* "View.MemoryView":849 + /* "View.MemoryView":853 * else: * if negative_step: * start = shape - 1 # <<<<<<<<<<<<<< @@ -10394,7 +10445,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ __pyx_v_start = (__pyx_v_shape - 1); - /* "View.MemoryView":848 + /* "View.MemoryView":852 * start = shape * else: * if negative_step: # <<<<<<<<<<<<<< @@ -10404,7 +10455,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, goto __pyx_L15; } - /* "View.MemoryView":851 + /* "View.MemoryView":855 * start = shape - 1 * else: * start = 0 # <<<<<<<<<<<<<< @@ -10418,7 +10469,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, } __pyx_L11:; - /* "View.MemoryView":853 + /* "View.MemoryView":857 * start = 0 * * if have_stop: # <<<<<<<<<<<<<< @@ -10428,7 +10479,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, __pyx_t_2 = (__pyx_v_have_stop != 0); if (__pyx_t_2) { - /* "View.MemoryView":854 + /* "View.MemoryView":858 * * if have_stop: * if stop < 0: # <<<<<<<<<<<<<< @@ -10438,7 +10489,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, __pyx_t_2 = ((__pyx_v_stop < 0) != 0); if (__pyx_t_2) { - /* "View.MemoryView":855 + /* "View.MemoryView":859 * if have_stop: * if stop < 0: * stop += shape # <<<<<<<<<<<<<< @@ -10447,7 +10498,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ __pyx_v_stop = (__pyx_v_stop + __pyx_v_shape); - /* "View.MemoryView":856 + /* "View.MemoryView":860 * if stop < 0: * stop += shape * if stop < 0: # <<<<<<<<<<<<<< @@ -10457,7 +10508,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, __pyx_t_2 = ((__pyx_v_stop < 0) != 0); if (__pyx_t_2) { - /* "View.MemoryView":857 + /* "View.MemoryView":861 * stop += shape * if stop < 0: * stop = 0 # <<<<<<<<<<<<<< @@ -10466,7 +10517,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ __pyx_v_stop = 0; - /* "View.MemoryView":856 + /* "View.MemoryView":860 * if stop < 0: * stop += shape * if stop < 0: # <<<<<<<<<<<<<< @@ -10475,7 +10526,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ } - /* "View.MemoryView":854 + /* "View.MemoryView":858 * * if have_stop: * if stop < 0: # <<<<<<<<<<<<<< @@ -10485,7 +10536,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, goto __pyx_L17; } - /* "View.MemoryView":858 + /* "View.MemoryView":862 * if stop < 0: * stop = 0 * elif stop > shape: # <<<<<<<<<<<<<< @@ -10495,7 +10546,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, __pyx_t_2 = ((__pyx_v_stop > __pyx_v_shape) != 0); if (__pyx_t_2) { - /* "View.MemoryView":859 + /* "View.MemoryView":863 * stop = 0 * elif stop > shape: * stop = shape # <<<<<<<<<<<<<< @@ -10504,7 +10555,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ __pyx_v_stop = __pyx_v_shape; - /* "View.MemoryView":858 + /* "View.MemoryView":862 * if stop < 0: * stop = 0 * elif stop > shape: # <<<<<<<<<<<<<< @@ -10514,7 +10565,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, } __pyx_L17:; - /* "View.MemoryView":853 + /* "View.MemoryView":857 * start = 0 * * if have_stop: # <<<<<<<<<<<<<< @@ -10524,7 +10575,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, goto __pyx_L16; } - /* "View.MemoryView":861 + /* "View.MemoryView":865 * stop = shape * else: * if negative_step: # <<<<<<<<<<<<<< @@ -10535,7 +10586,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, __pyx_t_2 = (__pyx_v_negative_step != 0); if (__pyx_t_2) { - /* "View.MemoryView":862 + /* "View.MemoryView":866 * else: * if negative_step: * stop = -1 # <<<<<<<<<<<<<< @@ -10544,7 +10595,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ __pyx_v_stop = -1L; - /* "View.MemoryView":861 + /* "View.MemoryView":865 * stop = shape * else: * if negative_step: # <<<<<<<<<<<<<< @@ -10554,7 +10605,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, goto __pyx_L19; } - /* "View.MemoryView":864 + /* "View.MemoryView":868 * stop = -1 * else: * stop = shape # <<<<<<<<<<<<<< @@ -10568,7 +10619,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, } __pyx_L16:; - /* "View.MemoryView":866 + /* "View.MemoryView":870 * stop = shape * * if not have_step: # <<<<<<<<<<<<<< @@ -10578,7 +10629,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, __pyx_t_2 = ((!(__pyx_v_have_step != 0)) != 0); if (__pyx_t_2) { - /* "View.MemoryView":867 + /* "View.MemoryView":871 * * if not have_step: * step = 1 # <<<<<<<<<<<<<< @@ -10587,7 +10638,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ __pyx_v_step = 1; - /* "View.MemoryView":866 + /* "View.MemoryView":870 * stop = shape * * if not have_step: # <<<<<<<<<<<<<< @@ -10596,7 +10647,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ } - /* "View.MemoryView":871 + /* "View.MemoryView":875 * * with cython.cdivision(True): * new_shape = (stop - start) // step # <<<<<<<<<<<<<< @@ -10605,7 +10656,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ __pyx_v_new_shape = ((__pyx_v_stop - __pyx_v_start) / __pyx_v_step); - /* "View.MemoryView":873 + /* "View.MemoryView":877 * new_shape = (stop - start) // step * * if (stop - start) - step * new_shape: # <<<<<<<<<<<<<< @@ -10615,7 +10666,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, __pyx_t_2 = (((__pyx_v_stop - __pyx_v_start) - (__pyx_v_step * __pyx_v_new_shape)) != 0); if (__pyx_t_2) { - /* "View.MemoryView":874 + /* "View.MemoryView":878 * * if (stop - start) - step * new_shape: * new_shape += 1 # <<<<<<<<<<<<<< @@ -10624,7 +10675,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ __pyx_v_new_shape = (__pyx_v_new_shape + 1); - /* "View.MemoryView":873 + /* "View.MemoryView":877 * new_shape = (stop - start) // step * * if (stop - start) - step * new_shape: # <<<<<<<<<<<<<< @@ -10633,7 +10684,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ } - /* "View.MemoryView":876 + /* "View.MemoryView":880 * new_shape += 1 * * if new_shape < 0: # <<<<<<<<<<<<<< @@ -10643,7 +10694,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, __pyx_t_2 = ((__pyx_v_new_shape < 0) != 0); if (__pyx_t_2) { - /* "View.MemoryView":877 + /* "View.MemoryView":881 * * if new_shape < 0: * new_shape = 0 # <<<<<<<<<<<<<< @@ -10652,7 +10703,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ __pyx_v_new_shape = 0; - /* "View.MemoryView":876 + /* "View.MemoryView":880 * new_shape += 1 * * if new_shape < 0: # <<<<<<<<<<<<<< @@ -10661,7 +10712,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ } - /* "View.MemoryView":880 + /* "View.MemoryView":884 * * * dst.strides[new_ndim] = stride * step # <<<<<<<<<<<<<< @@ -10670,7 +10721,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ (__pyx_v_dst->strides[__pyx_v_new_ndim]) = (__pyx_v_stride * __pyx_v_step); - /* "View.MemoryView":881 + /* "View.MemoryView":885 * * dst.strides[new_ndim] = stride * step * dst.shape[new_ndim] = new_shape # <<<<<<<<<<<<<< @@ -10679,7 +10730,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ (__pyx_v_dst->shape[__pyx_v_new_ndim]) = __pyx_v_new_shape; - /* "View.MemoryView":882 + /* "View.MemoryView":886 * dst.strides[new_ndim] = stride * step * dst.shape[new_ndim] = new_shape * dst.suboffsets[new_ndim] = suboffset # <<<<<<<<<<<<<< @@ -10690,7 +10741,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, } __pyx_L3:; - /* "View.MemoryView":885 + /* "View.MemoryView":889 * * * if suboffset_dim[0] < 0: # <<<<<<<<<<<<<< @@ -10700,7 +10751,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, __pyx_t_2 = (((__pyx_v_suboffset_dim[0]) < 0) != 0); if (__pyx_t_2) { - /* "View.MemoryView":886 + /* "View.MemoryView":890 * * if suboffset_dim[0] < 0: * dst.data += start * stride # <<<<<<<<<<<<<< @@ -10709,7 +10760,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ __pyx_v_dst->data = (__pyx_v_dst->data + (__pyx_v_start * __pyx_v_stride)); - /* "View.MemoryView":885 + /* "View.MemoryView":889 * * * if suboffset_dim[0] < 0: # <<<<<<<<<<<<<< @@ -10719,7 +10770,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, goto __pyx_L23; } - /* "View.MemoryView":888 + /* "View.MemoryView":892 * dst.data += start * stride * else: * dst.suboffsets[suboffset_dim[0]] += start * stride # <<<<<<<<<<<<<< @@ -10732,7 +10783,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, } __pyx_L23:; - /* "View.MemoryView":890 + /* "View.MemoryView":894 * dst.suboffsets[suboffset_dim[0]] += start * stride * * if suboffset >= 0: # <<<<<<<<<<<<<< @@ -10742,7 +10793,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, __pyx_t_2 = ((__pyx_v_suboffset >= 0) != 0); if (__pyx_t_2) { - /* "View.MemoryView":891 + /* "View.MemoryView":895 * * if suboffset >= 0: * if not is_slice: # <<<<<<<<<<<<<< @@ -10752,7 +10803,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, __pyx_t_2 = ((!(__pyx_v_is_slice != 0)) != 0); if (__pyx_t_2) { - /* "View.MemoryView":892 + /* "View.MemoryView":896 * if suboffset >= 0: * if not is_slice: * if new_ndim == 0: # <<<<<<<<<<<<<< @@ -10762,7 +10813,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, __pyx_t_2 = ((__pyx_v_new_ndim == 0) != 0); if (__pyx_t_2) { - /* "View.MemoryView":893 + /* "View.MemoryView":897 * if not is_slice: * if new_ndim == 0: * dst.data = ( dst.data)[0] + suboffset # <<<<<<<<<<<<<< @@ -10771,7 +10822,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ __pyx_v_dst->data = ((((char **)__pyx_v_dst->data)[0]) + __pyx_v_suboffset); - /* "View.MemoryView":892 + /* "View.MemoryView":896 * if suboffset >= 0: * if not is_slice: * if new_ndim == 0: # <<<<<<<<<<<<<< @@ -10781,7 +10832,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, goto __pyx_L26; } - /* "View.MemoryView":895 + /* "View.MemoryView":899 * dst.data = ( dst.data)[0] + suboffset * else: * _err_dim(IndexError, "All dimensions preceding dimension %d " # <<<<<<<<<<<<<< @@ -10790,18 +10841,18 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ /*else*/ { - /* "View.MemoryView":896 + /* "View.MemoryView":900 * else: * _err_dim(IndexError, "All dimensions preceding dimension %d " * "must be indexed and not sliced", dim) # <<<<<<<<<<<<<< * else: * suboffset_dim[0] = new_ndim */ - __pyx_t_3 = __pyx_memoryview_err_dim(__pyx_builtin_IndexError, ((char *)"All dimensions preceding dimension %d must be indexed and not sliced"), __pyx_v_dim); if (unlikely(__pyx_t_3 == ((int)-1))) __PYX_ERR(1, 895, __pyx_L1_error) + __pyx_t_3 = __pyx_memoryview_err_dim(__pyx_builtin_IndexError, ((char *)"All dimensions preceding dimension %d must be indexed and not sliced"), __pyx_v_dim); if (unlikely(__pyx_t_3 == ((int)-1))) __PYX_ERR(1, 899, __pyx_L1_error) } __pyx_L26:; - /* "View.MemoryView":891 + /* "View.MemoryView":895 * * if suboffset >= 0: * if not is_slice: # <<<<<<<<<<<<<< @@ -10811,7 +10862,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, goto __pyx_L25; } - /* "View.MemoryView":898 + /* "View.MemoryView":902 * "must be indexed and not sliced", dim) * else: * suboffset_dim[0] = new_ndim # <<<<<<<<<<<<<< @@ -10823,7 +10874,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, } __pyx_L25:; - /* "View.MemoryView":890 + /* "View.MemoryView":894 * dst.suboffsets[suboffset_dim[0]] += start * stride * * if suboffset >= 0: # <<<<<<<<<<<<<< @@ -10832,7 +10883,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, */ } - /* "View.MemoryView":900 + /* "View.MemoryView":904 * suboffset_dim[0] = new_ndim * * return 0 # <<<<<<<<<<<<<< @@ -10842,7 +10893,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, __pyx_r = 0; goto __pyx_L0; - /* "View.MemoryView":803 + /* "View.MemoryView":807 * * @cname('__pyx_memoryview_slice_memviewslice') * cdef int slice_memviewslice( # <<<<<<<<<<<<<< @@ -10866,7 +10917,7 @@ static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, return __pyx_r; } -/* "View.MemoryView":906 +/* "View.MemoryView":910 * * @cname('__pyx_pybuffer_index') * cdef char *pybuffer_index(Py_buffer *view, char *bufp, Py_ssize_t index, # <<<<<<<<<<<<<< @@ -10888,7 +10939,7 @@ static char *__pyx_pybuffer_index(Py_buffer *__pyx_v_view, char *__pyx_v_bufp, P PyObject *__pyx_t_4 = NULL; __Pyx_RefNannySetupContext("pybuffer_index", 0); - /* "View.MemoryView":908 + /* "View.MemoryView":912 * cdef char *pybuffer_index(Py_buffer *view, char *bufp, Py_ssize_t index, * Py_ssize_t dim) except NULL: * cdef Py_ssize_t shape, stride, suboffset = -1 # <<<<<<<<<<<<<< @@ -10897,7 +10948,7 @@ static char *__pyx_pybuffer_index(Py_buffer *__pyx_v_view, char *__pyx_v_bufp, P */ __pyx_v_suboffset = -1L; - /* "View.MemoryView":909 + /* "View.MemoryView":913 * Py_ssize_t dim) except NULL: * cdef Py_ssize_t shape, stride, suboffset = -1 * cdef Py_ssize_t itemsize = view.itemsize # <<<<<<<<<<<<<< @@ -10907,7 +10958,7 @@ static char *__pyx_pybuffer_index(Py_buffer *__pyx_v_view, char *__pyx_v_bufp, P __pyx_t_1 = __pyx_v_view->itemsize; __pyx_v_itemsize = __pyx_t_1; - /* "View.MemoryView":912 + /* "View.MemoryView":916 * cdef char *resultp * * if view.ndim == 0: # <<<<<<<<<<<<<< @@ -10917,7 +10968,7 @@ static char *__pyx_pybuffer_index(Py_buffer *__pyx_v_view, char *__pyx_v_bufp, P __pyx_t_2 = ((__pyx_v_view->ndim == 0) != 0); if (__pyx_t_2) { - /* "View.MemoryView":913 + /* "View.MemoryView":917 * * if view.ndim == 0: * shape = view.len / itemsize # <<<<<<<<<<<<<< @@ -10926,15 +10977,15 @@ static char *__pyx_pybuffer_index(Py_buffer *__pyx_v_view, char *__pyx_v_bufp, P */ if (unlikely(__pyx_v_itemsize == 0)) { PyErr_SetString(PyExc_ZeroDivisionError, "integer division or modulo by zero"); 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} - /* "View.MemoryView":916 + /* "View.MemoryView":920 * stride = itemsize * else: * shape = view.shape[dim] # <<<<<<<<<<<<<< @@ -10963,7 +11014,7 @@ static char *__pyx_pybuffer_index(Py_buffer *__pyx_v_view, char *__pyx_v_bufp, P /*else*/ { __pyx_v_shape = (__pyx_v_view->shape[__pyx_v_dim]); - /* "View.MemoryView":917 + /* "View.MemoryView":921 * else: * shape = view.shape[dim] * stride = view.strides[dim] # <<<<<<<<<<<<<< @@ -10972,7 +11023,7 @@ static char *__pyx_pybuffer_index(Py_buffer *__pyx_v_view, char *__pyx_v_bufp, P */ __pyx_v_stride = (__pyx_v_view->strides[__pyx_v_dim]); - /* "View.MemoryView":918 + /* "View.MemoryView":922 * shape = view.shape[dim] * stride = view.strides[dim] * if view.suboffsets != NULL: # <<<<<<<<<<<<<< @@ -10982,7 +11033,7 @@ static char *__pyx_pybuffer_index(Py_buffer *__pyx_v_view, char *__pyx_v_bufp, P __pyx_t_2 = ((__pyx_v_view->suboffsets != NULL) != 0); if (__pyx_t_2) { - /* "View.MemoryView":919 + /* "View.MemoryView":923 * stride = view.strides[dim] * if view.suboffsets != NULL: * suboffset = view.suboffsets[dim] # <<<<<<<<<<<<<< @@ -10991,7 +11042,7 @@ static char *__pyx_pybuffer_index(Py_buffer *__pyx_v_view, char *__pyx_v_bufp, P */ __pyx_v_suboffset = (__pyx_v_view->suboffsets[__pyx_v_dim]); 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if (unlikely(__pyx_t_2)) { - /* "View.MemoryView":924 + /* "View.MemoryView":928 * index += view.shape[dim] * if index < 0: * raise IndexError("Out of bounds on buffer access (axis %d)" % dim) # <<<<<<<<<<<<<< * * if index >= shape: */ - __pyx_t_3 = PyInt_FromSsize_t(__pyx_v_dim); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 924, __pyx_L1_error) + __pyx_t_3 = PyInt_FromSsize_t(__pyx_v_dim); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 928, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_3); - __pyx_t_4 = __Pyx_PyString_Format(__pyx_kp_s_Out_of_bounds_on_buffer_access_a, __pyx_t_3); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 924, __pyx_L1_error) + __pyx_t_4 = __Pyx_PyString_Format(__pyx_kp_s_Out_of_bounds_on_buffer_access_a, __pyx_t_3); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 928, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_4); __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __pyx_t_3 = __Pyx_PyObject_CallOneArg(__pyx_builtin_IndexError, __pyx_t_4); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 924, __pyx_L1_error) + __pyx_t_3 = __Pyx_PyObject_CallOneArg(__pyx_builtin_IndexError, __pyx_t_4); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 928, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_3); __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; __Pyx_Raise(__pyx_t_3, 0, 0, 0); __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __PYX_ERR(1, 924, __pyx_L1_error) + __PYX_ERR(1, 928, __pyx_L1_error) - /* "View.MemoryView":923 + /* "View.MemoryView":927 * if index < 0: * index += view.shape[dim] * if index < 0: # <<<<<<<<<<<<<< @@ -11059,7 +11110,7 @@ static char *__pyx_pybuffer_index(Py_buffer *__pyx_v_view, char *__pyx_v_bufp, P */ } - /* "View.MemoryView":921 + /* "View.MemoryView":925 * suboffset = view.suboffsets[dim] * * if index < 0: # <<<<<<<<<<<<<< @@ -11068,7 +11119,7 @@ static char *__pyx_pybuffer_index(Py_buffer *__pyx_v_view, char *__pyx_v_bufp, P */ } - /* "View.MemoryView":926 + /* "View.MemoryView":930 * raise IndexError("Out of bounds on buffer access (axis %d)" % dim) * * if index >= shape: # <<<<<<<<<<<<<< @@ -11078,26 +11129,26 @@ static char *__pyx_pybuffer_index(Py_buffer *__pyx_v_view, char *__pyx_v_bufp, P __pyx_t_2 = ((__pyx_v_index >= __pyx_v_shape) != 0); if (unlikely(__pyx_t_2)) { - /* "View.MemoryView":927 + /* "View.MemoryView":931 * * if index >= shape: * raise IndexError("Out of bounds on buffer access (axis %d)" % dim) # <<<<<<<<<<<<<< * * resultp = bufp + index * stride */ - __pyx_t_3 = PyInt_FromSsize_t(__pyx_v_dim); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 927, __pyx_L1_error) + __pyx_t_3 = PyInt_FromSsize_t(__pyx_v_dim); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 931, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_3); - __pyx_t_4 = __Pyx_PyString_Format(__pyx_kp_s_Out_of_bounds_on_buffer_access_a, __pyx_t_3); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 927, __pyx_L1_error) + __pyx_t_4 = __Pyx_PyString_Format(__pyx_kp_s_Out_of_bounds_on_buffer_access_a, __pyx_t_3); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 931, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_4); __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __pyx_t_3 = __Pyx_PyObject_CallOneArg(__pyx_builtin_IndexError, __pyx_t_4); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 927, __pyx_L1_error) + __pyx_t_3 = __Pyx_PyObject_CallOneArg(__pyx_builtin_IndexError, __pyx_t_4); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 931, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_3); __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; __Pyx_Raise(__pyx_t_3, 0, 0, 0); __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __PYX_ERR(1, 927, __pyx_L1_error) + __PYX_ERR(1, 931, __pyx_L1_error) - /* "View.MemoryView":926 + /* "View.MemoryView":930 * raise IndexError("Out of bounds on buffer access (axis %d)" % dim) * * if index >= shape: # <<<<<<<<<<<<<< @@ -11106,7 +11157,7 @@ static char *__pyx_pybuffer_index(Py_buffer *__pyx_v_view, char *__pyx_v_bufp, P */ } - /* "View.MemoryView":929 + /* "View.MemoryView":933 * raise IndexError("Out of bounds on buffer access (axis %d)" % dim) * * resultp = bufp + index * stride # <<<<<<<<<<<<<< @@ -11115,7 +11166,7 @@ static char *__pyx_pybuffer_index(Py_buffer *__pyx_v_view, char *__pyx_v_bufp, P */ __pyx_v_resultp = (__pyx_v_bufp + (__pyx_v_index * __pyx_v_stride)); - /* "View.MemoryView":930 + /* "View.MemoryView":934 * * resultp = bufp + index * stride * if suboffset >= 0: # <<<<<<<<<<<<<< @@ -11125,7 +11176,7 @@ static char *__pyx_pybuffer_index(Py_buffer *__pyx_v_view, char *__pyx_v_bufp, P __pyx_t_2 = ((__pyx_v_suboffset >= 0) != 0); if (__pyx_t_2) { - /* "View.MemoryView":931 + /* "View.MemoryView":935 * resultp = bufp + index * stride * if suboffset >= 0: * resultp = ( resultp)[0] + suboffset # <<<<<<<<<<<<<< @@ -11134,7 +11185,7 @@ static char *__pyx_pybuffer_index(Py_buffer *__pyx_v_view, char *__pyx_v_bufp, P */ __pyx_v_resultp = ((((char **)__pyx_v_resultp)[0]) + __pyx_v_suboffset); - /* "View.MemoryView":930 + /* "View.MemoryView":934 * * resultp = bufp + index * stride * if suboffset >= 0: # <<<<<<<<<<<<<< @@ -11143,7 +11194,7 @@ static char *__pyx_pybuffer_index(Py_buffer *__pyx_v_view, char *__pyx_v_bufp, P */ } - /* "View.MemoryView":933 + /* "View.MemoryView":937 * resultp = ( resultp)[0] + suboffset * * return resultp # <<<<<<<<<<<<<< @@ -11153,7 +11204,7 @@ static char *__pyx_pybuffer_index(Py_buffer *__pyx_v_view, char *__pyx_v_bufp, P __pyx_r = __pyx_v_resultp; goto __pyx_L0; - /* "View.MemoryView":906 + /* "View.MemoryView":910 * * @cname('__pyx_pybuffer_index') * cdef char *pybuffer_index(Py_buffer *view, char *bufp, Py_ssize_t index, # <<<<<<<<<<<<<< @@ -11172,7 +11223,7 @@ static char *__pyx_pybuffer_index(Py_buffer *__pyx_v_view, char *__pyx_v_bufp, P return __pyx_r; } -/* "View.MemoryView":939 +/* "View.MemoryView":943 * * @cname('__pyx_memslice_transpose') * cdef int transpose_memslice(__Pyx_memviewslice *memslice) nogil except 0: # <<<<<<<<<<<<<< @@ -11197,7 +11248,7 @@ static int __pyx_memslice_transpose(__Pyx_memviewslice *__pyx_v_memslice) { int __pyx_t_8; int __pyx_t_9; - /* "View.MemoryView":940 + /* "View.MemoryView":944 * @cname('__pyx_memslice_transpose') * cdef int transpose_memslice(__Pyx_memviewslice *memslice) nogil except 0: * cdef int ndim = memslice.memview.view.ndim # <<<<<<<<<<<<<< @@ -11207,7 +11258,7 @@ static int __pyx_memslice_transpose(__Pyx_memviewslice *__pyx_v_memslice) { __pyx_t_1 = __pyx_v_memslice->memview->view.ndim; __pyx_v_ndim = __pyx_t_1; - /* "View.MemoryView":942 + /* "View.MemoryView":946 * cdef int ndim = memslice.memview.view.ndim * * cdef Py_ssize_t *shape = memslice.shape # <<<<<<<<<<<<<< @@ -11217,7 +11268,7 @@ static int __pyx_memslice_transpose(__Pyx_memviewslice *__pyx_v_memslice) { __pyx_t_2 = __pyx_v_memslice->shape; __pyx_v_shape = __pyx_t_2; - /* "View.MemoryView":943 + /* "View.MemoryView":947 * * cdef Py_ssize_t *shape = memslice.shape * cdef Py_ssize_t *strides = memslice.strides # <<<<<<<<<<<<<< @@ -11227,7 +11278,7 @@ static int __pyx_memslice_transpose(__Pyx_memviewslice *__pyx_v_memslice) { __pyx_t_2 = __pyx_v_memslice->strides; __pyx_v_strides = __pyx_t_2; - /* "View.MemoryView":947 + /* "View.MemoryView":951 * * cdef int i, j * for i in range(ndim / 2): # <<<<<<<<<<<<<< @@ -11239,7 +11290,7 @@ static int __pyx_memslice_transpose(__Pyx_memviewslice *__pyx_v_memslice) { for (__pyx_t_1 = 0; __pyx_t_1 < __pyx_t_4; __pyx_t_1+=1) { __pyx_v_i = __pyx_t_1; - /* "View.MemoryView":948 + /* "View.MemoryView":952 * cdef int i, j * for i in range(ndim / 2): * j = ndim - 1 - i # <<<<<<<<<<<<<< @@ -11248,7 +11299,7 @@ static int __pyx_memslice_transpose(__Pyx_memviewslice *__pyx_v_memslice) { */ __pyx_v_j = ((__pyx_v_ndim - 1) - __pyx_v_i); - /* "View.MemoryView":949 + /* "View.MemoryView":953 * for i in range(ndim / 2): * j = ndim - 1 - i * strides[i], strides[j] = strides[j], strides[i] # <<<<<<<<<<<<<< @@ -11260,7 +11311,7 @@ static int __pyx_memslice_transpose(__Pyx_memviewslice *__pyx_v_memslice) { (__pyx_v_strides[__pyx_v_i]) = __pyx_t_5; (__pyx_v_strides[__pyx_v_j]) = __pyx_t_6; - /* "View.MemoryView":950 + /* "View.MemoryView":954 * j = ndim - 1 - i * strides[i], strides[j] = strides[j], strides[i] * shape[i], shape[j] = shape[j], shape[i] # <<<<<<<<<<<<<< @@ -11272,7 +11323,7 @@ static int __pyx_memslice_transpose(__Pyx_memviewslice *__pyx_v_memslice) { (__pyx_v_shape[__pyx_v_i]) = __pyx_t_6; (__pyx_v_shape[__pyx_v_j]) = __pyx_t_5; - /* "View.MemoryView":952 + /* "View.MemoryView":956 * shape[i], shape[j] = shape[j], shape[i] * * if memslice.suboffsets[i] >= 0 or memslice.suboffsets[j] >= 0: # <<<<<<<<<<<<<< @@ -11290,16 +11341,16 @@ static int __pyx_memslice_transpose(__Pyx_memviewslice *__pyx_v_memslice) { __pyx_L6_bool_binop_done:; if (__pyx_t_7) { - /* "View.MemoryView":953 + /* "View.MemoryView":957 * * if memslice.suboffsets[i] >= 0 or memslice.suboffsets[j] >= 0: * _err(ValueError, "Cannot transpose memoryview with indirect dimensions") # <<<<<<<<<<<<<< * * return 1 */ - __pyx_t_9 = __pyx_memoryview_err(__pyx_builtin_ValueError, ((char *)"Cannot transpose memoryview with indirect dimensions")); if (unlikely(__pyx_t_9 == ((int)-1))) __PYX_ERR(1, 953, __pyx_L1_error) + __pyx_t_9 = __pyx_memoryview_err(__pyx_builtin_ValueError, ((char *)"Cannot transpose memoryview with indirect dimensions")); if (unlikely(__pyx_t_9 == ((int)-1))) __PYX_ERR(1, 957, __pyx_L1_error) - /* "View.MemoryView":952 + /* "View.MemoryView":956 * shape[i], shape[j] = shape[j], shape[i] * * if memslice.suboffsets[i] >= 0 or memslice.suboffsets[j] >= 0: # <<<<<<<<<<<<<< @@ -11309,7 +11360,7 @@ static int __pyx_memslice_transpose(__Pyx_memviewslice *__pyx_v_memslice) { } } - /* "View.MemoryView":955 + /* "View.MemoryView":959 * _err(ValueError, "Cannot transpose memoryview with indirect dimensions") * * return 1 # <<<<<<<<<<<<<< @@ -11319,7 +11370,7 @@ static int __pyx_memslice_transpose(__Pyx_memviewslice *__pyx_v_memslice) { __pyx_r = 1; goto __pyx_L0; - /* "View.MemoryView":939 + /* "View.MemoryView":943 * * @cname('__pyx_memslice_transpose') * cdef int transpose_memslice(__Pyx_memviewslice *memslice) nogil except 0: # <<<<<<<<<<<<<< @@ -11343,7 +11394,7 @@ static int __pyx_memslice_transpose(__Pyx_memviewslice *__pyx_v_memslice) { return __pyx_r; 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__pyx_r = __pyx_t_2; __pyx_t_2 = 0; goto __pyx_L0; - /* "View.MemoryView":976 + /* "View.MemoryView":980 * * cdef convert_item_to_object(self, char *itemp): * if self.to_object_func != NULL: # <<<<<<<<<<<<<< @@ -11435,7 +11486,7 @@ static PyObject *__pyx_memoryviewslice_convert_item_to_object(struct __pyx_memor */ } - /* "View.MemoryView":979 + /* "View.MemoryView":983 * return self.to_object_func(itemp) * else: * return memoryview.convert_item_to_object(self, itemp) # <<<<<<<<<<<<<< @@ -11444,14 +11495,14 @@ static PyObject *__pyx_memoryviewslice_convert_item_to_object(struct __pyx_memor */ /*else*/ { __Pyx_XDECREF(__pyx_r); - __pyx_t_2 = __pyx_memoryview_convert_item_to_object(((struct __pyx_memoryview_obj *)__pyx_v_self), __pyx_v_itemp); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 979, __pyx_L1_error) + __pyx_t_2 = __pyx_memoryview_convert_item_to_object(((struct __pyx_memoryview_obj *)__pyx_v_self), __pyx_v_itemp); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 983, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_2); __pyx_r = __pyx_t_2; __pyx_t_2 = 0; goto __pyx_L0; } - /* "View.MemoryView":975 + /* "View.MemoryView":979 * __PYX_XDEC_MEMVIEW(&self.from_slice, 1) * * cdef convert_item_to_object(self, char *itemp): # <<<<<<<<<<<<<< @@ -11470,7 +11521,7 @@ static PyObject *__pyx_memoryviewslice_convert_item_to_object(struct __pyx_memor return __pyx_r; } -/* "View.MemoryView":981 +/* "View.MemoryView":985 * return memoryview.convert_item_to_object(self, itemp) * * cdef assign_item_from_object(self, char *itemp, object value): # <<<<<<<<<<<<<< @@ -11486,7 +11537,7 @@ static PyObject *__pyx_memoryviewslice_assign_item_from_object(struct __pyx_memo PyObject *__pyx_t_3 = NULL; __Pyx_RefNannySetupContext("assign_item_from_object", 0); - /* "View.MemoryView":982 + /* "View.MemoryView":986 * * cdef assign_item_from_object(self, char *itemp, object value): * if self.to_dtype_func != NULL: # <<<<<<<<<<<<<< @@ -11496,16 +11547,16 @@ static PyObject *__pyx_memoryviewslice_assign_item_from_object(struct __pyx_memo __pyx_t_1 = ((__pyx_v_self->to_dtype_func != NULL) != 0); if (__pyx_t_1) { - /* "View.MemoryView":983 + /* "View.MemoryView":987 * cdef assign_item_from_object(self, char *itemp, object value): * if self.to_dtype_func != NULL: * self.to_dtype_func(itemp, value) # <<<<<<<<<<<<<< * else: * memoryview.assign_item_from_object(self, itemp, value) */ - __pyx_t_2 = __pyx_v_self->to_dtype_func(__pyx_v_itemp, __pyx_v_value); if (unlikely(__pyx_t_2 == ((int)0))) __PYX_ERR(1, 983, __pyx_L1_error) + __pyx_t_2 = __pyx_v_self->to_dtype_func(__pyx_v_itemp, __pyx_v_value); if (unlikely(__pyx_t_2 == ((int)0))) __PYX_ERR(1, 987, __pyx_L1_error) - /* "View.MemoryView":982 + /* "View.MemoryView":986 * * cdef assign_item_from_object(self, char *itemp, object value): * if self.to_dtype_func != NULL: # <<<<<<<<<<<<<< @@ -11515,7 +11566,7 @@ static PyObject *__pyx_memoryviewslice_assign_item_from_object(struct __pyx_memo goto __pyx_L3; } - /* "View.MemoryView":985 + /* "View.MemoryView":989 * self.to_dtype_func(itemp, value) * else: * memoryview.assign_item_from_object(self, itemp, value) # <<<<<<<<<<<<<< @@ -11523,13 +11574,13 @@ static PyObject *__pyx_memoryviewslice_assign_item_from_object(struct __pyx_memo * @property */ /*else*/ { - __pyx_t_3 = __pyx_memoryview_assign_item_from_object(((struct __pyx_memoryview_obj *)__pyx_v_self), __pyx_v_itemp, __pyx_v_value); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 985, __pyx_L1_error) + __pyx_t_3 = __pyx_memoryview_assign_item_from_object(((struct __pyx_memoryview_obj *)__pyx_v_self), __pyx_v_itemp, __pyx_v_value); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 989, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_3); __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; } __pyx_L3:; - /* "View.MemoryView":981 + /* "View.MemoryView":985 * return memoryview.convert_item_to_object(self, itemp) * * cdef assign_item_from_object(self, char *itemp, object value): # <<<<<<<<<<<<<< @@ -11550,7 +11601,7 @@ static PyObject *__pyx_memoryviewslice_assign_item_from_object(struct __pyx_memo return __pyx_r; } -/* "View.MemoryView":988 +/* "View.MemoryView":992 * * @property * def base(self): # <<<<<<<<<<<<<< @@ -11576,7 +11627,7 @@ static PyObject *__pyx_pf_15View_dot_MemoryView_16_memoryviewslice_4base___get__ __Pyx_RefNannyDeclarations __Pyx_RefNannySetupContext("__get__", 0); - /* "View.MemoryView":989 + /* "View.MemoryView":993 * @property * def base(self): * return self.from_object # <<<<<<<<<<<<<< @@ -11588,7 +11639,7 @@ static PyObject *__pyx_pf_15View_dot_MemoryView_16_memoryviewslice_4base___get__ __pyx_r = __pyx_v_self->from_object; 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__Pyx_INCREF(Py_None); goto __pyx_L0; - /* "View.MemoryView":1003 + /* "View.MemoryView":1007 * cdef _memoryviewslice result * * if memviewslice.memview == Py_None: # <<<<<<<<<<<<<< @@ -11765,16 +11816,16 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl */ } - /* "View.MemoryView":1009 + /* "View.MemoryView":1013 * * * result = _memoryviewslice(None, 0, dtype_is_object) # <<<<<<<<<<<<<< * * result.from_slice = memviewslice */ - __pyx_t_2 = __Pyx_PyBool_FromLong(__pyx_v_dtype_is_object); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1009, __pyx_L1_error) + __pyx_t_2 = __Pyx_PyBool_FromLong(__pyx_v_dtype_is_object); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1013, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_2); - __pyx_t_3 = PyTuple_New(3); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1009, __pyx_L1_error) + __pyx_t_3 = PyTuple_New(3); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1013, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_3); __Pyx_INCREF(Py_None); __Pyx_GIVEREF(Py_None); @@ -11785,13 +11836,13 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl __Pyx_GIVEREF(__pyx_t_2); 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- /* "View.MemoryView":1014 + /* "View.MemoryView":1018 * __PYX_INC_MEMVIEW(&memviewslice, 1) * * result.from_object = ( memviewslice.memview).base # <<<<<<<<<<<<<< * result.typeinfo = memviewslice.memview.typeinfo * */ - __pyx_t_2 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_memviewslice.memview), __pyx_n_s_base); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1014, __pyx_L1_error) + __pyx_t_2 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_memviewslice.memview), __pyx_n_s_base); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1018, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_2); __Pyx_GIVEREF(__pyx_t_2); __Pyx_GOTREF(__pyx_v_result->from_object); @@ -11824,7 +11875,7 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl __pyx_v_result->from_object = __pyx_t_2; __pyx_t_2 = 0; - /* "View.MemoryView":1015 + /* "View.MemoryView":1019 * * result.from_object = ( memviewslice.memview).base * result.typeinfo = memviewslice.memview.typeinfo # <<<<<<<<<<<<<< @@ -11834,7 +11885,7 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl __pyx_t_4 = __pyx_v_memviewslice.memview->typeinfo; __pyx_v_result->__pyx_base.typeinfo = __pyx_t_4; - /* "View.MemoryView":1017 + /* "View.MemoryView":1021 * result.typeinfo = memviewslice.memview.typeinfo * * result.view = memviewslice.memview.view # <<<<<<<<<<<<<< @@ -11844,7 +11895,7 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl __pyx_t_5 = __pyx_v_memviewslice.memview->view; __pyx_v_result->__pyx_base.view = __pyx_t_5; - /* "View.MemoryView":1018 + /* "View.MemoryView":1022 * * result.view = memviewslice.memview.view * result.view.buf = memviewslice.data # <<<<<<<<<<<<<< @@ -11853,7 +11904,7 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl */ __pyx_v_result->__pyx_base.view.buf = ((void *)__pyx_v_memviewslice.data); - /* "View.MemoryView":1019 + /* "View.MemoryView":1023 * result.view = memviewslice.memview.view * result.view.buf = memviewslice.data * result.view.ndim = ndim # <<<<<<<<<<<<<< @@ -11862,7 +11913,7 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl */ __pyx_v_result->__pyx_base.view.ndim = __pyx_v_ndim; - /* "View.MemoryView":1020 + /* "View.MemoryView":1024 * result.view.buf = memviewslice.data * result.view.ndim = ndim * (<__pyx_buffer *> &result.view).obj = Py_None # <<<<<<<<<<<<<< @@ -11871,7 +11922,7 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl */ ((Py_buffer *)(&__pyx_v_result->__pyx_base.view))->obj = Py_None; - /* "View.MemoryView":1021 + /* "View.MemoryView":1025 * result.view.ndim = ndim * (<__pyx_buffer *> &result.view).obj = Py_None * Py_INCREF(Py_None) # <<<<<<<<<<<<<< @@ -11880,7 +11931,7 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl */ Py_INCREF(Py_None); - /* "View.MemoryView":1023 + /* "View.MemoryView":1027 * Py_INCREF(Py_None) * * if (memviewslice.memview).flags & PyBUF_WRITABLE: # <<<<<<<<<<<<<< @@ -11890,7 +11941,7 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl __pyx_t_1 = ((((struct __pyx_memoryview_obj *)__pyx_v_memviewslice.memview)->flags & PyBUF_WRITABLE) != 0); if (__pyx_t_1) { - /* "View.MemoryView":1024 + /* "View.MemoryView":1028 * * if (memviewslice.memview).flags & PyBUF_WRITABLE: * result.flags = PyBUF_RECORDS # <<<<<<<<<<<<<< @@ -11899,7 +11950,7 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl */ __pyx_v_result->__pyx_base.flags = PyBUF_RECORDS; - /* "View.MemoryView":1023 + /* "View.MemoryView":1027 * Py_INCREF(Py_None) * * if (memviewslice.memview).flags & PyBUF_WRITABLE: # <<<<<<<<<<<<<< @@ -11909,7 +11960,7 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl goto __pyx_L4; } - /* "View.MemoryView":1026 + /* "View.MemoryView":1030 * result.flags = PyBUF_RECORDS * else: * result.flags = PyBUF_RECORDS_RO # <<<<<<<<<<<<<< @@ -11921,7 +11972,7 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl } __pyx_L4:; - /* "View.MemoryView":1028 + /* "View.MemoryView":1032 * result.flags = PyBUF_RECORDS_RO * * result.view.shape = result.from_slice.shape # <<<<<<<<<<<<<< @@ -11930,7 +11981,7 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl */ __pyx_v_result->__pyx_base.view.shape = ((Py_ssize_t *)__pyx_v_result->from_slice.shape); - /* "View.MemoryView":1029 + /* "View.MemoryView":1033 * * result.view.shape = result.from_slice.shape * result.view.strides = result.from_slice.strides # <<<<<<<<<<<<<< @@ -11939,7 +11990,7 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl */ __pyx_v_result->__pyx_base.view.strides = ((Py_ssize_t *)__pyx_v_result->from_slice.strides); - /* "View.MemoryView":1032 + /* "View.MemoryView":1036 * * * result.view.suboffsets = NULL # <<<<<<<<<<<<<< @@ -11948,7 +11999,7 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl */ __pyx_v_result->__pyx_base.view.suboffsets = NULL; - /* "View.MemoryView":1033 + /* "View.MemoryView":1037 * * result.view.suboffsets = NULL * for suboffset in result.from_slice.suboffsets[:ndim]: # <<<<<<<<<<<<<< @@ -11960,7 +12011,7 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl __pyx_t_6 = __pyx_t_8; __pyx_v_suboffset = (__pyx_t_6[0]); - /* "View.MemoryView":1034 + /* "View.MemoryView":1038 * result.view.suboffsets = NULL * for suboffset in result.from_slice.suboffsets[:ndim]: * if suboffset >= 0: # <<<<<<<<<<<<<< @@ -11970,7 +12021,7 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl __pyx_t_1 = ((__pyx_v_suboffset >= 0) != 0); if (__pyx_t_1) { - /* "View.MemoryView":1035 + /* "View.MemoryView":1039 * for suboffset in result.from_slice.suboffsets[:ndim]: * if suboffset >= 0: * result.view.suboffsets = result.from_slice.suboffsets # <<<<<<<<<<<<<< @@ -11979,7 +12030,7 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl */ __pyx_v_result->__pyx_base.view.suboffsets = ((Py_ssize_t *)__pyx_v_result->from_slice.suboffsets); - /* "View.MemoryView":1036 + /* "View.MemoryView":1040 * if suboffset >= 0: * result.view.suboffsets = result.from_slice.suboffsets * break # <<<<<<<<<<<<<< @@ -11988,7 +12039,7 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl */ goto __pyx_L6_break; - /* "View.MemoryView":1034 + /* "View.MemoryView":1038 * result.view.suboffsets = NULL * for suboffset in result.from_slice.suboffsets[:ndim]: * if suboffset >= 0: # <<<<<<<<<<<<<< @@ -11999,7 +12050,7 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl } __pyx_L6_break:; - /* "View.MemoryView":1038 + /* "View.MemoryView":1042 * break * * result.view.len = result.view.itemsize # <<<<<<<<<<<<<< @@ -12009,7 +12060,7 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl __pyx_t_9 = __pyx_v_result->__pyx_base.view.itemsize; __pyx_v_result->__pyx_base.view.len = __pyx_t_9; - /* "View.MemoryView":1039 + /* "View.MemoryView":1043 * * result.view.len = result.view.itemsize * for length in result.view.shape[:ndim]: # <<<<<<<<<<<<<< @@ -12019,29 +12070,29 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl __pyx_t_7 = (__pyx_v_result->__pyx_base.view.shape + __pyx_v_ndim); for (__pyx_t_8 = __pyx_v_result->__pyx_base.view.shape; __pyx_t_8 < __pyx_t_7; __pyx_t_8++) { __pyx_t_6 = __pyx_t_8; - __pyx_t_2 = PyInt_FromSsize_t((__pyx_t_6[0])); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1039, __pyx_L1_error) + __pyx_t_2 = PyInt_FromSsize_t((__pyx_t_6[0])); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1043, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_2); __Pyx_XDECREF_SET(__pyx_v_length, __pyx_t_2); __pyx_t_2 = 0; - /* "View.MemoryView":1040 + /* "View.MemoryView":1044 * result.view.len = result.view.itemsize * for length in result.view.shape[:ndim]: * result.view.len *= length # <<<<<<<<<<<<<< * * result.to_object_func = to_object_func */ - __pyx_t_2 = PyInt_FromSsize_t(__pyx_v_result->__pyx_base.view.len); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1040, __pyx_L1_error) + __pyx_t_2 = PyInt_FromSsize_t(__pyx_v_result->__pyx_base.view.len); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1044, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_2); - __pyx_t_3 = PyNumber_InPlaceMultiply(__pyx_t_2, __pyx_v_length); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1040, __pyx_L1_error) + __pyx_t_3 = PyNumber_InPlaceMultiply(__pyx_t_2, __pyx_v_length); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1044, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_3); __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; - __pyx_t_9 = __Pyx_PyIndex_AsSsize_t(__pyx_t_3); if (unlikely((__pyx_t_9 == (Py_ssize_t)-1) && PyErr_Occurred())) __PYX_ERR(1, 1040, __pyx_L1_error) + __pyx_t_9 = __Pyx_PyIndex_AsSsize_t(__pyx_t_3); if (unlikely((__pyx_t_9 == (Py_ssize_t)-1) && PyErr_Occurred())) __PYX_ERR(1, 1044, __pyx_L1_error) __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; __pyx_v_result->__pyx_base.view.len = __pyx_t_9; } - /* "View.MemoryView":1042 + /* "View.MemoryView":1046 * result.view.len *= length * * result.to_object_func = to_object_func # <<<<<<<<<<<<<< @@ -12050,7 +12101,7 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl */ __pyx_v_result->to_object_func = __pyx_v_to_object_func; - /* "View.MemoryView":1043 + /* "View.MemoryView":1047 * * result.to_object_func = to_object_func * result.to_dtype_func = to_dtype_func # <<<<<<<<<<<<<< @@ -12059,7 +12110,7 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl */ __pyx_v_result->to_dtype_func = __pyx_v_to_dtype_func; - /* "View.MemoryView":1045 + /* "View.MemoryView":1049 * result.to_dtype_func = to_dtype_func * * return result # <<<<<<<<<<<<<< @@ -12071,7 +12122,7 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl __pyx_r = ((PyObject *)__pyx_v_result); goto __pyx_L0; - /* "View.MemoryView":995 + /* "View.MemoryView":999 * * @cname('__pyx_memoryview_fromslice') * cdef memoryview_fromslice(__Pyx_memviewslice memviewslice, # <<<<<<<<<<<<<< @@ -12093,7 +12144,7 @@ static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewsl return __pyx_r; } -/* "View.MemoryView":1048 +/* "View.MemoryView":1052 * * @cname('__pyx_memoryview_get_slice_from_memoryview') * cdef __Pyx_memviewslice *get_slice_from_memview(memoryview memview, # <<<<<<<<<<<<<< @@ -12110,7 +12161,7 @@ static __Pyx_memviewslice *__pyx_memoryview_get_slice_from_memoryview(struct __p PyObject *__pyx_t_3 = NULL; __Pyx_RefNannySetupContext("get_slice_from_memview", 0); - /* "View.MemoryView":1051 + /* "View.MemoryView":1055 * __Pyx_memviewslice *mslice): * cdef _memoryviewslice obj * if isinstance(memview, _memoryviewslice): # <<<<<<<<<<<<<< @@ -12121,20 +12172,20 @@ static __Pyx_memviewslice *__pyx_memoryview_get_slice_from_memoryview(struct __p __pyx_t_2 = (__pyx_t_1 != 0); if (__pyx_t_2) { - /* "View.MemoryView":1052 + /* "View.MemoryView":1056 * cdef _memoryviewslice obj * if isinstance(memview, _memoryviewslice): * obj = memview # <<<<<<<<<<<<<< * return &obj.from_slice * else: */ - if (!(likely(((((PyObject *)__pyx_v_memview)) == Py_None) || likely(__Pyx_TypeTest(((PyObject *)__pyx_v_memview), __pyx_memoryviewslice_type))))) __PYX_ERR(1, 1052, __pyx_L1_error) + if (!(likely(((((PyObject *)__pyx_v_memview)) == Py_None) || likely(__Pyx_TypeTest(((PyObject *)__pyx_v_memview), __pyx_memoryviewslice_type))))) __PYX_ERR(1, 1056, __pyx_L1_error) __pyx_t_3 = ((PyObject *)__pyx_v_memview); __Pyx_INCREF(__pyx_t_3); __pyx_v_obj = ((struct __pyx_memoryviewslice_obj *)__pyx_t_3); __pyx_t_3 = 0; - /* "View.MemoryView":1053 + /* "View.MemoryView":1057 * if isinstance(memview, _memoryviewslice): * obj = memview * return &obj.from_slice # <<<<<<<<<<<<<< @@ -12144,7 +12195,7 @@ static __Pyx_memviewslice *__pyx_memoryview_get_slice_from_memoryview(struct __p __pyx_r = (&__pyx_v_obj->from_slice); goto __pyx_L0; - /* "View.MemoryView":1051 + /* "View.MemoryView":1055 * __Pyx_memviewslice *mslice): * cdef _memoryviewslice obj * if isinstance(memview, _memoryviewslice): # <<<<<<<<<<<<<< @@ -12153,7 +12204,7 @@ static __Pyx_memviewslice *__pyx_memoryview_get_slice_from_memoryview(struct __p */ } - /* "View.MemoryView":1055 + /* "View.MemoryView":1059 * return &obj.from_slice * else: * slice_copy(memview, mslice) # <<<<<<<<<<<<<< @@ -12163,7 +12214,7 @@ static __Pyx_memviewslice *__pyx_memoryview_get_slice_from_memoryview(struct __p /*else*/ { __pyx_memoryview_slice_copy(__pyx_v_memview, __pyx_v_mslice); - /* "View.MemoryView":1056 + /* "View.MemoryView":1060 * else: * slice_copy(memview, mslice) * return mslice # <<<<<<<<<<<<<< @@ -12174,7 +12225,7 @@ static __Pyx_memviewslice *__pyx_memoryview_get_slice_from_memoryview(struct __p goto __pyx_L0; } - /* "View.MemoryView":1048 + /* "View.MemoryView":1052 * * @cname('__pyx_memoryview_get_slice_from_memoryview') * cdef __Pyx_memviewslice *get_slice_from_memview(memoryview memview, # <<<<<<<<<<<<<< @@ -12193,7 +12244,7 @@ static __Pyx_memviewslice *__pyx_memoryview_get_slice_from_memoryview(struct __p return __pyx_r; } -/* "View.MemoryView":1059 +/* "View.MemoryView":1063 * * @cname('__pyx_memoryview_slice_copy') * cdef void slice_copy(memoryview memview, __Pyx_memviewslice *dst): # <<<<<<<<<<<<<< @@ -12214,7 +12265,7 @@ static void __pyx_memoryview_slice_copy(struct __pyx_memoryview_obj *__pyx_v_mem Py_ssize_t __pyx_t_5; __Pyx_RefNannySetupContext("slice_copy", 0); - /* "View.MemoryView":1063 + /* "View.MemoryView":1067 * cdef (Py_ssize_t*) shape, strides, suboffsets * * shape = memview.view.shape # <<<<<<<<<<<<<< @@ -12224,7 +12275,7 @@ static void __pyx_memoryview_slice_copy(struct __pyx_memoryview_obj *__pyx_v_mem __pyx_t_1 = __pyx_v_memview->view.shape; __pyx_v_shape = __pyx_t_1; - /* "View.MemoryView":1064 + /* "View.MemoryView":1068 * * shape = memview.view.shape * strides = memview.view.strides # <<<<<<<<<<<<<< @@ -12234,7 +12285,7 @@ static void __pyx_memoryview_slice_copy(struct __pyx_memoryview_obj *__pyx_v_mem __pyx_t_1 = __pyx_v_memview->view.strides; __pyx_v_strides = __pyx_t_1; - /* "View.MemoryView":1065 + /* "View.MemoryView":1069 * shape = memview.view.shape * strides = memview.view.strides * suboffsets = memview.view.suboffsets # <<<<<<<<<<<<<< @@ -12244,7 +12295,7 @@ static void __pyx_memoryview_slice_copy(struct __pyx_memoryview_obj *__pyx_v_mem __pyx_t_1 = __pyx_v_memview->view.suboffsets; __pyx_v_suboffsets = __pyx_t_1; - /* "View.MemoryView":1067 + /* "View.MemoryView":1071 * suboffsets = memview.view.suboffsets * * dst.memview = <__pyx_memoryview *> memview # <<<<<<<<<<<<<< @@ -12253,7 +12304,7 @@ static void __pyx_memoryview_slice_copy(struct __pyx_memoryview_obj *__pyx_v_mem */ __pyx_v_dst->memview = ((struct __pyx_memoryview_obj *)__pyx_v_memview); - /* "View.MemoryView":1068 + /* "View.MemoryView":1072 * * dst.memview = <__pyx_memoryview *> memview * dst.data = memview.view.buf # <<<<<<<<<<<<<< @@ -12262,7 +12313,7 @@ static void __pyx_memoryview_slice_copy(struct __pyx_memoryview_obj *__pyx_v_mem */ __pyx_v_dst->data = ((char *)__pyx_v_memview->view.buf); - /* "View.MemoryView":1070 + /* "View.MemoryView":1074 * dst.data = memview.view.buf * * for dim in range(memview.view.ndim): # <<<<<<<<<<<<<< @@ -12274,7 +12325,7 @@ static void __pyx_memoryview_slice_copy(struct __pyx_memoryview_obj *__pyx_v_mem for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { __pyx_v_dim = __pyx_t_4; - /* "View.MemoryView":1071 + /* "View.MemoryView":1075 * * for dim in range(memview.view.ndim): * dst.shape[dim] = shape[dim] # <<<<<<<<<<<<<< @@ -12283,7 +12334,7 @@ static void __pyx_memoryview_slice_copy(struct __pyx_memoryview_obj *__pyx_v_mem */ (__pyx_v_dst->shape[__pyx_v_dim]) = (__pyx_v_shape[__pyx_v_dim]); - /* "View.MemoryView":1072 + /* "View.MemoryView":1076 * for dim in range(memview.view.ndim): * dst.shape[dim] = shape[dim] * dst.strides[dim] = strides[dim] # <<<<<<<<<<<<<< @@ -12292,7 +12343,7 @@ static void __pyx_memoryview_slice_copy(struct __pyx_memoryview_obj *__pyx_v_mem */ (__pyx_v_dst->strides[__pyx_v_dim]) = (__pyx_v_strides[__pyx_v_dim]); - /* "View.MemoryView":1073 + /* "View.MemoryView":1077 * dst.shape[dim] = shape[dim] * dst.strides[dim] = strides[dim] * dst.suboffsets[dim] = suboffsets[dim] if suboffsets else -1 # <<<<<<<<<<<<<< @@ -12307,7 +12358,7 @@ static void __pyx_memoryview_slice_copy(struct __pyx_memoryview_obj *__pyx_v_mem (__pyx_v_dst->suboffsets[__pyx_v_dim]) = __pyx_t_5; } - /* "View.MemoryView":1059 + /* "View.MemoryView":1063 * * @cname('__pyx_memoryview_slice_copy') * cdef void slice_copy(memoryview memview, __Pyx_memviewslice *dst): # <<<<<<<<<<<<<< @@ -12319,7 +12370,7 @@ static void __pyx_memoryview_slice_copy(struct __pyx_memoryview_obj *__pyx_v_mem __Pyx_RefNannyFinishContext(); } -/* "View.MemoryView":1076 +/* "View.MemoryView":1080 * * @cname('__pyx_memoryview_copy_object') * cdef memoryview_copy(memoryview memview): # <<<<<<<<<<<<<< @@ -12334,7 +12385,7 @@ static PyObject *__pyx_memoryview_copy_object(struct __pyx_memoryview_obj *__pyx PyObject *__pyx_t_1 = NULL; __Pyx_RefNannySetupContext("memoryview_copy", 0); - /* "View.MemoryView":1079 + /* "View.MemoryView":1083 * "Create a new memoryview object" * cdef __Pyx_memviewslice memviewslice * slice_copy(memview, &memviewslice) # <<<<<<<<<<<<<< @@ -12343,7 +12394,7 @@ static PyObject *__pyx_memoryview_copy_object(struct __pyx_memoryview_obj *__pyx */ __pyx_memoryview_slice_copy(__pyx_v_memview, (&__pyx_v_memviewslice)); - /* "View.MemoryView":1080 + /* "View.MemoryView":1084 * cdef __Pyx_memviewslice memviewslice * slice_copy(memview, &memviewslice) * return memoryview_copy_from_slice(memview, &memviewslice) # <<<<<<<<<<<<<< @@ -12351,13 +12402,13 @@ static PyObject *__pyx_memoryview_copy_object(struct __pyx_memoryview_obj *__pyx * @cname('__pyx_memoryview_copy_object_from_slice') */ __Pyx_XDECREF(__pyx_r); - __pyx_t_1 = __pyx_memoryview_copy_object_from_slice(__pyx_v_memview, (&__pyx_v_memviewslice)); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1080, __pyx_L1_error) + __pyx_t_1 = __pyx_memoryview_copy_object_from_slice(__pyx_v_memview, (&__pyx_v_memviewslice)); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1084, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); __pyx_r = __pyx_t_1; __pyx_t_1 = 0; goto __pyx_L0; - /* "View.MemoryView":1076 + /* "View.MemoryView":1080 * * @cname('__pyx_memoryview_copy_object') * cdef memoryview_copy(memoryview memview): # <<<<<<<<<<<<<< @@ -12376,7 +12427,7 @@ static PyObject *__pyx_memoryview_copy_object(struct __pyx_memoryview_obj *__pyx return __pyx_r; } -/* "View.MemoryView":1083 +/* "View.MemoryView":1087 * * @cname('__pyx_memoryview_copy_object_from_slice') * cdef memoryview_copy_from_slice(memoryview memview, __Pyx_memviewslice *memviewslice): # <<<<<<<<<<<<<< @@ -12396,7 +12447,7 @@ static PyObject *__pyx_memoryview_copy_object_from_slice(struct __pyx_memoryview PyObject *__pyx_t_5 = NULL; __Pyx_RefNannySetupContext("memoryview_copy_from_slice", 0); - /* "View.MemoryView":1090 + /* "View.MemoryView":1094 * cdef int (*to_dtype_func)(char *, object) except 0 * * if isinstance(memview, _memoryviewslice): # <<<<<<<<<<<<<< @@ -12407,7 +12458,7 @@ static PyObject *__pyx_memoryview_copy_object_from_slice(struct __pyx_memoryview __pyx_t_2 = (__pyx_t_1 != 0); if (__pyx_t_2) { - /* "View.MemoryView":1091 + /* "View.MemoryView":1095 * * if isinstance(memview, _memoryviewslice): * to_object_func = (<_memoryviewslice> memview).to_object_func # <<<<<<<<<<<<<< @@ -12417,7 +12468,7 @@ static PyObject *__pyx_memoryview_copy_object_from_slice(struct __pyx_memoryview __pyx_t_3 = ((struct __pyx_memoryviewslice_obj *)__pyx_v_memview)->to_object_func; __pyx_v_to_object_func = __pyx_t_3; - /* "View.MemoryView":1092 + /* "View.MemoryView":1096 * if isinstance(memview, _memoryviewslice): * to_object_func = (<_memoryviewslice> memview).to_object_func * to_dtype_func = (<_memoryviewslice> memview).to_dtype_func # <<<<<<<<<<<<<< @@ -12427,7 +12478,7 @@ static PyObject *__pyx_memoryview_copy_object_from_slice(struct __pyx_memoryview __pyx_t_4 = ((struct __pyx_memoryviewslice_obj *)__pyx_v_memview)->to_dtype_func; __pyx_v_to_dtype_func = __pyx_t_4; - /* "View.MemoryView":1090 + /* "View.MemoryView":1094 * cdef int (*to_dtype_func)(char *, object) except 0 * * if isinstance(memview, _memoryviewslice): # <<<<<<<<<<<<<< @@ -12437,7 +12488,7 @@ static PyObject *__pyx_memoryview_copy_object_from_slice(struct __pyx_memoryview goto __pyx_L3; } - /* "View.MemoryView":1094 + /* "View.MemoryView":1098 * to_dtype_func = (<_memoryviewslice> memview).to_dtype_func * else: * to_object_func = NULL # <<<<<<<<<<<<<< @@ -12447,7 +12498,7 @@ static PyObject *__pyx_memoryview_copy_object_from_slice(struct __pyx_memoryview /*else*/ { __pyx_v_to_object_func = NULL; - /* "View.MemoryView":1095 + /* "View.MemoryView":1099 * else: * to_object_func = NULL * to_dtype_func = NULL # <<<<<<<<<<<<<< @@ -12458,7 +12509,7 @@ static PyObject *__pyx_memoryview_copy_object_from_slice(struct __pyx_memoryview } __pyx_L3:; - /* "View.MemoryView":1097 + /* "View.MemoryView":1101 * to_dtype_func = NULL * * return memoryview_fromslice(memviewslice[0], memview.view.ndim, # <<<<<<<<<<<<<< @@ -12467,20 +12518,20 @@ static PyObject *__pyx_memoryview_copy_object_from_slice(struct __pyx_memoryview */ __Pyx_XDECREF(__pyx_r); - /* "View.MemoryView":1099 + /* "View.MemoryView":1103 * return memoryview_fromslice(memviewslice[0], memview.view.ndim, * to_object_func, to_dtype_func, * memview.dtype_is_object) # <<<<<<<<<<<<<< * * */ - __pyx_t_5 = __pyx_memoryview_fromslice((__pyx_v_memviewslice[0]), __pyx_v_memview->view.ndim, __pyx_v_to_object_func, __pyx_v_to_dtype_func, __pyx_v_memview->dtype_is_object); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1097, __pyx_L1_error) + __pyx_t_5 = __pyx_memoryview_fromslice((__pyx_v_memviewslice[0]), __pyx_v_memview->view.ndim, __pyx_v_to_object_func, __pyx_v_to_dtype_func, __pyx_v_memview->dtype_is_object); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1101, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_5); __pyx_r = __pyx_t_5; __pyx_t_5 = 0; goto __pyx_L0; - /* "View.MemoryView":1083 + /* "View.MemoryView":1087 * * @cname('__pyx_memoryview_copy_object_from_slice') * cdef memoryview_copy_from_slice(memoryview memview, __Pyx_memviewslice *memviewslice): # <<<<<<<<<<<<<< @@ -12499,7 +12550,7 @@ static PyObject *__pyx_memoryview_copy_object_from_slice(struct __pyx_memoryview return __pyx_r; } -/* "View.MemoryView":1105 +/* "View.MemoryView":1109 * * * cdef Py_ssize_t abs_py_ssize_t(Py_ssize_t arg) nogil: # <<<<<<<<<<<<<< @@ -12511,7 +12562,7 @@ static Py_ssize_t abs_py_ssize_t(Py_ssize_t __pyx_v_arg) { Py_ssize_t __pyx_r; int __pyx_t_1; - /* "View.MemoryView":1106 + /* "View.MemoryView":1110 * * cdef Py_ssize_t abs_py_ssize_t(Py_ssize_t arg) nogil: * if arg < 0: # <<<<<<<<<<<<<< @@ -12521,7 +12572,7 @@ static Py_ssize_t abs_py_ssize_t(Py_ssize_t __pyx_v_arg) { __pyx_t_1 = ((__pyx_v_arg < 0) != 0); if (__pyx_t_1) { - /* "View.MemoryView":1107 + /* "View.MemoryView":1111 * cdef Py_ssize_t abs_py_ssize_t(Py_ssize_t arg) nogil: * if arg < 0: * return -arg # <<<<<<<<<<<<<< @@ -12531,7 +12582,7 @@ static Py_ssize_t abs_py_ssize_t(Py_ssize_t __pyx_v_arg) { __pyx_r = (-__pyx_v_arg); goto __pyx_L0; - /* "View.MemoryView":1106 + /* "View.MemoryView":1110 * * cdef Py_ssize_t abs_py_ssize_t(Py_ssize_t arg) nogil: * if arg < 0: # <<<<<<<<<<<<<< @@ -12540,7 +12591,7 @@ static Py_ssize_t abs_py_ssize_t(Py_ssize_t __pyx_v_arg) { */ } - /* "View.MemoryView":1109 + /* "View.MemoryView":1113 * return -arg * else: * return arg # <<<<<<<<<<<<<< @@ -12552,7 +12603,7 @@ static Py_ssize_t abs_py_ssize_t(Py_ssize_t __pyx_v_arg) { goto __pyx_L0; } - /* "View.MemoryView":1105 + /* "View.MemoryView":1109 * * * cdef Py_ssize_t abs_py_ssize_t(Py_ssize_t arg) nogil: # <<<<<<<<<<<<<< @@ -12565,7 +12616,7 @@ static Py_ssize_t abs_py_ssize_t(Py_ssize_t __pyx_v_arg) { return __pyx_r; } -/* "View.MemoryView":1112 +/* "View.MemoryView":1116 * * @cname('__pyx_get_best_slice_order') * cdef char get_best_order(__Pyx_memviewslice *mslice, int ndim) nogil: # <<<<<<<<<<<<<< @@ -12583,7 +12634,7 @@ static char __pyx_get_best_slice_order(__Pyx_memviewslice *__pyx_v_mslice, int _ int __pyx_t_3; int __pyx_t_4; - /* "View.MemoryView":1117 + /* "View.MemoryView":1121 * """ * cdef int i * cdef Py_ssize_t c_stride = 0 # <<<<<<<<<<<<<< @@ -12592,7 +12643,7 @@ static char __pyx_get_best_slice_order(__Pyx_memviewslice *__pyx_v_mslice, int _ */ __pyx_v_c_stride = 0; - /* "View.MemoryView":1118 + /* "View.MemoryView":1122 * cdef int i * cdef Py_ssize_t c_stride = 0 * cdef Py_ssize_t f_stride = 0 # <<<<<<<<<<<<<< @@ -12601,7 +12652,7 @@ static char __pyx_get_best_slice_order(__Pyx_memviewslice *__pyx_v_mslice, int _ */ __pyx_v_f_stride = 0; - /* "View.MemoryView":1120 + /* "View.MemoryView":1124 * cdef Py_ssize_t f_stride = 0 * * for i in range(ndim - 1, -1, -1): # <<<<<<<<<<<<<< @@ -12611,7 +12662,7 @@ static char __pyx_get_best_slice_order(__Pyx_memviewslice *__pyx_v_mslice, int _ for (__pyx_t_1 = (__pyx_v_ndim - 1); __pyx_t_1 > -1; __pyx_t_1-=1) { __pyx_v_i = __pyx_t_1; - /* "View.MemoryView":1121 + /* "View.MemoryView":1125 * * for i in range(ndim - 1, -1, -1): * if mslice.shape[i] > 1: # <<<<<<<<<<<<<< @@ -12621,7 +12672,7 @@ static char __pyx_get_best_slice_order(__Pyx_memviewslice *__pyx_v_mslice, int _ __pyx_t_2 = (((__pyx_v_mslice->shape[__pyx_v_i]) > 1) != 0); if (__pyx_t_2) { - /* "View.MemoryView":1122 + /* "View.MemoryView":1126 * for i in range(ndim - 1, -1, -1): * if mslice.shape[i] > 1: * c_stride = mslice.strides[i] # <<<<<<<<<<<<<< @@ -12630,7 +12681,7 @@ static char __pyx_get_best_slice_order(__Pyx_memviewslice *__pyx_v_mslice, int _ */ __pyx_v_c_stride = (__pyx_v_mslice->strides[__pyx_v_i]); - /* "View.MemoryView":1123 + /* "View.MemoryView":1127 * if mslice.shape[i] > 1: * c_stride = mslice.strides[i] * break # <<<<<<<<<<<<<< @@ -12639,7 +12690,7 @@ static char __pyx_get_best_slice_order(__Pyx_memviewslice *__pyx_v_mslice, int _ */ goto __pyx_L4_break; - /* "View.MemoryView":1121 + /* "View.MemoryView":1125 * * for i in range(ndim - 1, -1, -1): * if mslice.shape[i] > 1: # <<<<<<<<<<<<<< @@ -12650,7 +12701,7 @@ static char __pyx_get_best_slice_order(__Pyx_memviewslice *__pyx_v_mslice, int _ } __pyx_L4_break:; - /* "View.MemoryView":1125 + /* "View.MemoryView":1129 * break * * for i in range(ndim): # <<<<<<<<<<<<<< @@ -12662,7 +12713,7 @@ static char __pyx_get_best_slice_order(__Pyx_memviewslice *__pyx_v_mslice, int _ for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { __pyx_v_i = __pyx_t_4; - /* "View.MemoryView":1126 + /* "View.MemoryView":1130 * * for i in range(ndim): * if mslice.shape[i] > 1: # <<<<<<<<<<<<<< @@ -12672,7 +12723,7 @@ static char __pyx_get_best_slice_order(__Pyx_memviewslice *__pyx_v_mslice, int _ __pyx_t_2 = (((__pyx_v_mslice->shape[__pyx_v_i]) > 1) != 0); if (__pyx_t_2) { - /* "View.MemoryView":1127 + /* "View.MemoryView":1131 * for i in range(ndim): * if mslice.shape[i] > 1: * f_stride = mslice.strides[i] # <<<<<<<<<<<<<< @@ -12681,7 +12732,7 @@ static char __pyx_get_best_slice_order(__Pyx_memviewslice *__pyx_v_mslice, int _ */ __pyx_v_f_stride = (__pyx_v_mslice->strides[__pyx_v_i]); - /* "View.MemoryView":1128 + /* "View.MemoryView":1132 * if mslice.shape[i] > 1: * f_stride = mslice.strides[i] * break # <<<<<<<<<<<<<< @@ -12690,7 +12741,7 @@ static char __pyx_get_best_slice_order(__Pyx_memviewslice *__pyx_v_mslice, int _ */ goto __pyx_L7_break; - /* "View.MemoryView":1126 + /* "View.MemoryView":1130 * * for i in range(ndim): * if mslice.shape[i] > 1: # <<<<<<<<<<<<<< @@ -12701,7 +12752,7 @@ static char __pyx_get_best_slice_order(__Pyx_memviewslice *__pyx_v_mslice, int _ } __pyx_L7_break:; - /* "View.MemoryView":1130 + /* "View.MemoryView":1134 * break * * if abs_py_ssize_t(c_stride) <= abs_py_ssize_t(f_stride): # <<<<<<<<<<<<<< @@ -12711,7 +12762,7 @@ static char __pyx_get_best_slice_order(__Pyx_memviewslice *__pyx_v_mslice, int _ __pyx_t_2 = ((abs_py_ssize_t(__pyx_v_c_stride) <= abs_py_ssize_t(__pyx_v_f_stride)) != 0); if (__pyx_t_2) { - /* "View.MemoryView":1131 + /* "View.MemoryView":1135 * * if abs_py_ssize_t(c_stride) <= abs_py_ssize_t(f_stride): * return 'C' # <<<<<<<<<<<<<< @@ -12721,7 +12772,7 @@ static char __pyx_get_best_slice_order(__Pyx_memviewslice *__pyx_v_mslice, int _ __pyx_r = 'C'; goto __pyx_L0; - /* "View.MemoryView":1130 + /* "View.MemoryView":1134 * break * * if abs_py_ssize_t(c_stride) <= abs_py_ssize_t(f_stride): # <<<<<<<<<<<<<< @@ -12730,7 +12781,7 @@ static char __pyx_get_best_slice_order(__Pyx_memviewslice *__pyx_v_mslice, int _ */ } - /* "View.MemoryView":1133 + /* "View.MemoryView":1137 * return 'C' * else: * return 'F' # <<<<<<<<<<<<<< @@ -12742,7 +12793,7 @@ static char __pyx_get_best_slice_order(__Pyx_memviewslice *__pyx_v_mslice, int _ goto __pyx_L0; } - /* "View.MemoryView":1112 + /* "View.MemoryView":1116 * * @cname('__pyx_get_best_slice_order') * cdef char get_best_order(__Pyx_memviewslice *mslice, int ndim) nogil: # <<<<<<<<<<<<<< @@ -12755,7 +12806,7 @@ static char __pyx_get_best_slice_order(__Pyx_memviewslice *__pyx_v_mslice, int _ return __pyx_r; } -/* "View.MemoryView":1136 +/* "View.MemoryView":1140 * * @cython.cdivision(True) * cdef void _copy_strided_to_strided(char *src_data, Py_ssize_t *src_strides, # <<<<<<<<<<<<<< @@ -12776,7 +12827,7 @@ static void _copy_strided_to_strided(char *__pyx_v_src_data, Py_ssize_t *__pyx_v Py_ssize_t __pyx_t_5; Py_ssize_t __pyx_t_6; - /* "View.MemoryView":1143 + /* "View.MemoryView":1147 * * cdef Py_ssize_t i * cdef Py_ssize_t src_extent = src_shape[0] # <<<<<<<<<<<<<< @@ -12785,7 +12836,7 @@ static void _copy_strided_to_strided(char *__pyx_v_src_data, Py_ssize_t *__pyx_v */ __pyx_v_src_extent = (__pyx_v_src_shape[0]); - /* "View.MemoryView":1144 + /* "View.MemoryView":1148 * cdef Py_ssize_t i * cdef Py_ssize_t src_extent = src_shape[0] * cdef Py_ssize_t dst_extent = dst_shape[0] # <<<<<<<<<<<<<< @@ -12794,7 +12845,7 @@ static void _copy_strided_to_strided(char *__pyx_v_src_data, Py_ssize_t *__pyx_v */ __pyx_v_dst_extent = (__pyx_v_dst_shape[0]); - /* "View.MemoryView":1145 + /* "View.MemoryView":1149 * cdef Py_ssize_t src_extent = src_shape[0] * cdef Py_ssize_t dst_extent = dst_shape[0] * cdef Py_ssize_t src_stride = src_strides[0] # <<<<<<<<<<<<<< @@ -12803,7 +12854,7 @@ static void _copy_strided_to_strided(char *__pyx_v_src_data, Py_ssize_t *__pyx_v */ __pyx_v_src_stride = (__pyx_v_src_strides[0]); - /* "View.MemoryView":1146 + /* "View.MemoryView":1150 * cdef Py_ssize_t dst_extent = dst_shape[0] * cdef Py_ssize_t src_stride = src_strides[0] * cdef Py_ssize_t dst_stride = dst_strides[0] # <<<<<<<<<<<<<< @@ -12812,7 +12863,7 @@ static void _copy_strided_to_strided(char *__pyx_v_src_data, Py_ssize_t *__pyx_v */ __pyx_v_dst_stride = (__pyx_v_dst_strides[0]); - /* "View.MemoryView":1148 + /* "View.MemoryView":1152 * cdef Py_ssize_t dst_stride = dst_strides[0] * * if ndim == 1: # <<<<<<<<<<<<<< @@ -12822,7 +12873,7 @@ static void _copy_strided_to_strided(char *__pyx_v_src_data, Py_ssize_t *__pyx_v __pyx_t_1 = ((__pyx_v_ndim == 1) != 0); if (__pyx_t_1) { - /* "View.MemoryView":1149 + /* "View.MemoryView":1153 * * if ndim == 1: * if (src_stride > 0 and dst_stride > 0 and # <<<<<<<<<<<<<< @@ -12842,7 +12893,7 @@ static void _copy_strided_to_strided(char *__pyx_v_src_data, Py_ssize_t *__pyx_v goto __pyx_L5_bool_binop_done; } - /* "View.MemoryView":1150 + /* "View.MemoryView":1154 * if ndim == 1: * if (src_stride > 0 and dst_stride > 0 and * src_stride == itemsize == dst_stride): # <<<<<<<<<<<<<< @@ -12857,7 +12908,7 @@ static void _copy_strided_to_strided(char *__pyx_v_src_data, Py_ssize_t *__pyx_v __pyx_t_1 = __pyx_t_3; __pyx_L5_bool_binop_done:; - /* "View.MemoryView":1149 + /* "View.MemoryView":1153 * * if ndim == 1: * if (src_stride > 0 and dst_stride > 0 and # <<<<<<<<<<<<<< @@ -12866,7 +12917,7 @@ static void _copy_strided_to_strided(char *__pyx_v_src_data, Py_ssize_t *__pyx_v */ if (__pyx_t_1) { - /* "View.MemoryView":1151 + /* "View.MemoryView":1155 * if (src_stride > 0 and dst_stride > 0 and * src_stride == itemsize == dst_stride): * memcpy(dst_data, src_data, itemsize * dst_extent) # <<<<<<<<<<<<<< @@ -12875,7 +12926,7 @@ static void _copy_strided_to_strided(char *__pyx_v_src_data, Py_ssize_t *__pyx_v */ (void)(memcpy(__pyx_v_dst_data, __pyx_v_src_data, (__pyx_v_itemsize * __pyx_v_dst_extent))); - /* "View.MemoryView":1149 + /* "View.MemoryView":1153 * * if ndim == 1: * if (src_stride > 0 and dst_stride > 0 and # <<<<<<<<<<<<<< @@ -12885,7 +12936,7 @@ static void _copy_strided_to_strided(char *__pyx_v_src_data, Py_ssize_t *__pyx_v goto __pyx_L4; } - /* "View.MemoryView":1153 + /* "View.MemoryView":1157 * memcpy(dst_data, src_data, itemsize * dst_extent) * else: * for i in range(dst_extent): # <<<<<<<<<<<<<< @@ -12898,7 +12949,7 @@ static void _copy_strided_to_strided(char *__pyx_v_src_data, Py_ssize_t *__pyx_v for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) { __pyx_v_i = __pyx_t_6; - /* "View.MemoryView":1154 + /* "View.MemoryView":1158 * else: * for i in range(dst_extent): * memcpy(dst_data, src_data, itemsize) # <<<<<<<<<<<<<< @@ -12907,7 +12958,7 @@ static void _copy_strided_to_strided(char *__pyx_v_src_data, Py_ssize_t *__pyx_v */ (void)(memcpy(__pyx_v_dst_data, __pyx_v_src_data, __pyx_v_itemsize)); - /* "View.MemoryView":1155 + /* "View.MemoryView":1159 * for i in range(dst_extent): * memcpy(dst_data, src_data, itemsize) * src_data += src_stride # <<<<<<<<<<<<<< @@ -12916,7 +12967,7 @@ static void _copy_strided_to_strided(char *__pyx_v_src_data, Py_ssize_t *__pyx_v */ __pyx_v_src_data = (__pyx_v_src_data + __pyx_v_src_stride); - /* "View.MemoryView":1156 + /* "View.MemoryView":1160 * memcpy(dst_data, src_data, itemsize) * src_data += src_stride * dst_data += dst_stride # <<<<<<<<<<<<<< @@ -12928,7 +12979,7 @@ static void _copy_strided_to_strided(char *__pyx_v_src_data, Py_ssize_t *__pyx_v } __pyx_L4:; - /* "View.MemoryView":1148 + /* "View.MemoryView":1152 * cdef Py_ssize_t dst_stride = dst_strides[0] * * if ndim == 1: # <<<<<<<<<<<<<< @@ -12938,7 +12989,7 @@ static void _copy_strided_to_strided(char *__pyx_v_src_data, Py_ssize_t *__pyx_v goto __pyx_L3; } - /* "View.MemoryView":1158 + /* "View.MemoryView":1162 * dst_data += dst_stride * else: * for i in range(dst_extent): # <<<<<<<<<<<<<< @@ -12951,7 +13002,7 @@ static void _copy_strided_to_strided(char *__pyx_v_src_data, Py_ssize_t *__pyx_v for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) { __pyx_v_i = __pyx_t_6; - /* "View.MemoryView":1159 + /* "View.MemoryView":1163 * else: * for i in range(dst_extent): * _copy_strided_to_strided(src_data, src_strides + 1, # <<<<<<<<<<<<<< @@ -12960,7 +13011,7 @@ static void _copy_strided_to_strided(char *__pyx_v_src_data, Py_ssize_t *__pyx_v */ _copy_strided_to_strided(__pyx_v_src_data, (__pyx_v_src_strides + 1), __pyx_v_dst_data, (__pyx_v_dst_strides + 1), (__pyx_v_src_shape + 1), (__pyx_v_dst_shape + 1), (__pyx_v_ndim - 1), __pyx_v_itemsize); - /* "View.MemoryView":1163 + /* "View.MemoryView":1167 * src_shape + 1, dst_shape + 1, * ndim - 1, itemsize) * src_data += src_stride # <<<<<<<<<<<<<< @@ -12969,7 +13020,7 @@ static void _copy_strided_to_strided(char *__pyx_v_src_data, Py_ssize_t *__pyx_v */ __pyx_v_src_data = (__pyx_v_src_data + __pyx_v_src_stride); - /* "View.MemoryView":1164 + /* "View.MemoryView":1168 * ndim - 1, itemsize) * src_data += src_stride * dst_data += dst_stride # <<<<<<<<<<<<<< @@ -12981,7 +13032,7 @@ static void _copy_strided_to_strided(char *__pyx_v_src_data, Py_ssize_t *__pyx_v } __pyx_L3:; - /* "View.MemoryView":1136 + /* "View.MemoryView":1140 * * @cython.cdivision(True) * cdef void _copy_strided_to_strided(char *src_data, Py_ssize_t *src_strides, # <<<<<<<<<<<<<< @@ -12992,7 +13043,7 @@ static void _copy_strided_to_strided(char *__pyx_v_src_data, Py_ssize_t *__pyx_v /* function exit code */ } -/* "View.MemoryView":1166 +/* "View.MemoryView":1170 * dst_data += dst_stride * * cdef void copy_strided_to_strided(__Pyx_memviewslice *src, # <<<<<<<<<<<<<< @@ -13002,7 +13053,7 @@ static void _copy_strided_to_strided(char *__pyx_v_src_data, Py_ssize_t *__pyx_v static void copy_strided_to_strided(__Pyx_memviewslice *__pyx_v_src, __Pyx_memviewslice *__pyx_v_dst, int __pyx_v_ndim, size_t __pyx_v_itemsize) { - /* "View.MemoryView":1169 + /* "View.MemoryView":1173 * __Pyx_memviewslice *dst, * int ndim, size_t itemsize) nogil: * _copy_strided_to_strided(src.data, src.strides, dst.data, dst.strides, # <<<<<<<<<<<<<< @@ -13011,7 +13062,7 @@ static void copy_strided_to_strided(__Pyx_memviewslice *__pyx_v_src, __Pyx_memvi */ _copy_strided_to_strided(__pyx_v_src->data, __pyx_v_src->strides, __pyx_v_dst->data, __pyx_v_dst->strides, __pyx_v_src->shape, __pyx_v_dst->shape, __pyx_v_ndim, __pyx_v_itemsize); - /* "View.MemoryView":1166 + /* "View.MemoryView":1170 * dst_data += dst_stride * * cdef void copy_strided_to_strided(__Pyx_memviewslice *src, # <<<<<<<<<<<<<< @@ -13022,7 +13073,7 @@ static void copy_strided_to_strided(__Pyx_memviewslice *__pyx_v_src, __Pyx_memvi /* function exit code */ } -/* "View.MemoryView":1173 +/* "View.MemoryView":1177 * * @cname('__pyx_memoryview_slice_get_size') * cdef Py_ssize_t slice_get_size(__Pyx_memviewslice *src, int ndim) nogil: # <<<<<<<<<<<<<< @@ -13039,7 +13090,7 @@ static Py_ssize_t __pyx_memoryview_slice_get_size(__Pyx_memviewslice *__pyx_v_sr int __pyx_t_3; int __pyx_t_4; - /* "View.MemoryView":1176 + /* "View.MemoryView":1180 * "Return the size of the memory occupied by the slice in number of bytes" * cdef int i * cdef Py_ssize_t size = src.memview.view.itemsize # <<<<<<<<<<<<<< @@ -13049,7 +13100,7 @@ static Py_ssize_t __pyx_memoryview_slice_get_size(__Pyx_memviewslice *__pyx_v_sr __pyx_t_1 = __pyx_v_src->memview->view.itemsize; __pyx_v_size = __pyx_t_1; - /* "View.MemoryView":1178 + /* "View.MemoryView":1182 * cdef Py_ssize_t size = src.memview.view.itemsize * * for i in range(ndim): # <<<<<<<<<<<<<< @@ -13061,7 +13112,7 @@ static Py_ssize_t __pyx_memoryview_slice_get_size(__Pyx_memviewslice *__pyx_v_sr for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { __pyx_v_i = __pyx_t_4; - /* "View.MemoryView":1179 + /* "View.MemoryView":1183 * * for i in range(ndim): * size *= src.shape[i] # <<<<<<<<<<<<<< @@ -13071,7 +13122,7 @@ static Py_ssize_t __pyx_memoryview_slice_get_size(__Pyx_memviewslice *__pyx_v_sr __pyx_v_size = (__pyx_v_size * (__pyx_v_src->shape[__pyx_v_i])); } - /* "View.MemoryView":1181 + /* "View.MemoryView":1185 * size *= src.shape[i] * * return size # <<<<<<<<<<<<<< @@ -13081,7 +13132,7 @@ static Py_ssize_t __pyx_memoryview_slice_get_size(__Pyx_memviewslice *__pyx_v_sr __pyx_r = __pyx_v_size; goto __pyx_L0; - /* "View.MemoryView":1173 + /* "View.MemoryView":1177 * * @cname('__pyx_memoryview_slice_get_size') * cdef Py_ssize_t slice_get_size(__Pyx_memviewslice *src, int ndim) nogil: # <<<<<<<<<<<<<< @@ -13094,7 +13145,7 @@ static Py_ssize_t __pyx_memoryview_slice_get_size(__Pyx_memviewslice *__pyx_v_sr return __pyx_r; } -/* "View.MemoryView":1184 +/* "View.MemoryView":1188 * * @cname('__pyx_fill_contig_strides_array') * cdef Py_ssize_t fill_contig_strides_array( # <<<<<<<<<<<<<< @@ -13110,7 +13161,7 @@ static Py_ssize_t __pyx_fill_contig_strides_array(Py_ssize_t *__pyx_v_shape, Py_ int __pyx_t_3; int __pyx_t_4; - /* "View.MemoryView":1193 + /* "View.MemoryView":1197 * cdef int idx * * if order == 'F': # <<<<<<<<<<<<<< @@ -13120,7 +13171,7 @@ static Py_ssize_t __pyx_fill_contig_strides_array(Py_ssize_t *__pyx_v_shape, Py_ __pyx_t_1 = ((__pyx_v_order == 'F') != 0); if (__pyx_t_1) { - /* "View.MemoryView":1194 + /* "View.MemoryView":1198 * * if order == 'F': * for idx in range(ndim): # <<<<<<<<<<<<<< @@ -13132,7 +13183,7 @@ static Py_ssize_t __pyx_fill_contig_strides_array(Py_ssize_t *__pyx_v_shape, Py_ for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { __pyx_v_idx = __pyx_t_4; - /* "View.MemoryView":1195 + /* "View.MemoryView":1199 * if order == 'F': * for idx in range(ndim): * strides[idx] = stride # <<<<<<<<<<<<<< @@ -13141,7 +13192,7 @@ static Py_ssize_t __pyx_fill_contig_strides_array(Py_ssize_t *__pyx_v_shape, Py_ */ (__pyx_v_strides[__pyx_v_idx]) = __pyx_v_stride; - /* "View.MemoryView":1196 + /* "View.MemoryView":1200 * for idx in range(ndim): * strides[idx] = stride * stride = stride * shape[idx] # <<<<<<<<<<<<<< @@ -13151,7 +13202,7 @@ static Py_ssize_t __pyx_fill_contig_strides_array(Py_ssize_t *__pyx_v_shape, Py_ __pyx_v_stride = (__pyx_v_stride * (__pyx_v_shape[__pyx_v_idx])); } - /* "View.MemoryView":1193 + /* "View.MemoryView":1197 * cdef int idx * * if order == 'F': # <<<<<<<<<<<<<< @@ -13161,7 +13212,7 @@ static Py_ssize_t __pyx_fill_contig_strides_array(Py_ssize_t *__pyx_v_shape, Py_ goto __pyx_L3; } - /* "View.MemoryView":1198 + /* "View.MemoryView":1202 * stride = stride * shape[idx] * else: * for idx in range(ndim - 1, -1, -1): # <<<<<<<<<<<<<< @@ -13172,7 +13223,7 @@ static Py_ssize_t __pyx_fill_contig_strides_array(Py_ssize_t *__pyx_v_shape, Py_ for (__pyx_t_2 = (__pyx_v_ndim - 1); __pyx_t_2 > -1; __pyx_t_2-=1) { __pyx_v_idx = __pyx_t_2; - /* "View.MemoryView":1199 + /* "View.MemoryView":1203 * else: * for idx in range(ndim - 1, -1, -1): * strides[idx] = stride # <<<<<<<<<<<<<< @@ -13181,7 +13232,7 @@ static Py_ssize_t __pyx_fill_contig_strides_array(Py_ssize_t *__pyx_v_shape, Py_ */ (__pyx_v_strides[__pyx_v_idx]) = __pyx_v_stride; - /* "View.MemoryView":1200 + /* "View.MemoryView":1204 * for idx in range(ndim - 1, -1, -1): * strides[idx] = stride * stride = stride * shape[idx] # <<<<<<<<<<<<<< @@ -13193,7 +13244,7 @@ static Py_ssize_t __pyx_fill_contig_strides_array(Py_ssize_t *__pyx_v_shape, Py_ } __pyx_L3:; - /* "View.MemoryView":1202 + /* "View.MemoryView":1206 * stride = stride * shape[idx] * * return stride # <<<<<<<<<<<<<< @@ -13203,7 +13254,7 @@ static Py_ssize_t __pyx_fill_contig_strides_array(Py_ssize_t *__pyx_v_shape, Py_ __pyx_r = __pyx_v_stride; goto __pyx_L0; - /* "View.MemoryView":1184 + /* "View.MemoryView":1188 * * @cname('__pyx_fill_contig_strides_array') * cdef Py_ssize_t fill_contig_strides_array( # <<<<<<<<<<<<<< @@ -13216,7 +13267,7 @@ static Py_ssize_t __pyx_fill_contig_strides_array(Py_ssize_t *__pyx_v_shape, Py_ return __pyx_r; } -/* "View.MemoryView":1205 +/* "View.MemoryView":1209 * * @cname('__pyx_memoryview_copy_data_to_temp') * cdef void *copy_data_to_temp(__Pyx_memviewslice *src, # <<<<<<<<<<<<<< @@ -13237,7 +13288,7 @@ static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *__pyx_v_src, int __pyx_t_5; int __pyx_t_6; - /* "View.MemoryView":1216 + /* "View.MemoryView":1220 * cdef void *result * * cdef size_t itemsize = src.memview.view.itemsize # <<<<<<<<<<<<<< @@ -13247,7 +13298,7 @@ static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *__pyx_v_src, __pyx_t_1 = __pyx_v_src->memview->view.itemsize; __pyx_v_itemsize = __pyx_t_1; - /* "View.MemoryView":1217 + /* "View.MemoryView":1221 * * cdef size_t itemsize = src.memview.view.itemsize * cdef size_t size = slice_get_size(src, ndim) # <<<<<<<<<<<<<< @@ -13256,7 +13307,7 @@ static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *__pyx_v_src, */ __pyx_v_size = __pyx_memoryview_slice_get_size(__pyx_v_src, __pyx_v_ndim); - /* "View.MemoryView":1219 + /* "View.MemoryView":1223 * cdef size_t size = slice_get_size(src, ndim) * * result = malloc(size) # <<<<<<<<<<<<<< @@ -13265,7 +13316,7 @@ static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *__pyx_v_src, */ __pyx_v_result = malloc(__pyx_v_size); - /* "View.MemoryView":1220 + /* "View.MemoryView":1224 * * result = malloc(size) * if not result: # <<<<<<<<<<<<<< @@ -13275,16 +13326,16 @@ static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *__pyx_v_src, __pyx_t_2 = ((!(__pyx_v_result != 0)) != 0); if (__pyx_t_2) { - /* "View.MemoryView":1221 + /* "View.MemoryView":1225 * result = malloc(size) * if not result: * _err(MemoryError, NULL) # <<<<<<<<<<<<<< * * */ - __pyx_t_3 = __pyx_memoryview_err(__pyx_builtin_MemoryError, NULL); if (unlikely(__pyx_t_3 == ((int)-1))) __PYX_ERR(1, 1221, __pyx_L1_error) + __pyx_t_3 = __pyx_memoryview_err(__pyx_builtin_MemoryError, NULL); if (unlikely(__pyx_t_3 == ((int)-1))) __PYX_ERR(1, 1225, __pyx_L1_error) - /* "View.MemoryView":1220 + /* "View.MemoryView":1224 * * result = malloc(size) * if not result: # <<<<<<<<<<<<<< @@ -13293,7 +13344,7 @@ static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *__pyx_v_src, */ } - /* "View.MemoryView":1224 + /* "View.MemoryView":1228 * * * tmpslice.data = result # <<<<<<<<<<<<<< @@ -13302,7 +13353,7 @@ static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *__pyx_v_src, */ __pyx_v_tmpslice->data = ((char *)__pyx_v_result); - /* "View.MemoryView":1225 + /* "View.MemoryView":1229 * * tmpslice.data = result * tmpslice.memview = src.memview # <<<<<<<<<<<<<< @@ -13312,7 +13363,7 @@ static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *__pyx_v_src, __pyx_t_4 = __pyx_v_src->memview; __pyx_v_tmpslice->memview = __pyx_t_4; - /* "View.MemoryView":1226 + /* "View.MemoryView":1230 * tmpslice.data = result * tmpslice.memview = src.memview * for i in range(ndim): # <<<<<<<<<<<<<< @@ -13324,7 +13375,7 @@ static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *__pyx_v_src, for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) { __pyx_v_i = __pyx_t_6; - /* "View.MemoryView":1227 + /* "View.MemoryView":1231 * tmpslice.memview = src.memview * for i in range(ndim): * tmpslice.shape[i] = src.shape[i] # <<<<<<<<<<<<<< @@ -13333,7 +13384,7 @@ static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *__pyx_v_src, */ (__pyx_v_tmpslice->shape[__pyx_v_i]) = (__pyx_v_src->shape[__pyx_v_i]); - /* "View.MemoryView":1228 + /* "View.MemoryView":1232 * for i in range(ndim): * tmpslice.shape[i] = src.shape[i] * tmpslice.suboffsets[i] = -1 # <<<<<<<<<<<<<< @@ -13343,7 +13394,7 @@ static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *__pyx_v_src, (__pyx_v_tmpslice->suboffsets[__pyx_v_i]) = -1L; } - /* "View.MemoryView":1230 + /* "View.MemoryView":1234 * tmpslice.suboffsets[i] = -1 * * fill_contig_strides_array(&tmpslice.shape[0], &tmpslice.strides[0], itemsize, # <<<<<<<<<<<<<< @@ -13352,7 +13403,7 @@ static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *__pyx_v_src, */ (void)(__pyx_fill_contig_strides_array((&(__pyx_v_tmpslice->shape[0])), (&(__pyx_v_tmpslice->strides[0])), __pyx_v_itemsize, __pyx_v_ndim, __pyx_v_order)); - /* "View.MemoryView":1234 + /* "View.MemoryView":1238 * * * for i in range(ndim): # <<<<<<<<<<<<<< @@ -13364,7 +13415,7 @@ static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *__pyx_v_src, for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) { __pyx_v_i = __pyx_t_6; - /* "View.MemoryView":1235 + /* "View.MemoryView":1239 * * for i in range(ndim): * if tmpslice.shape[i] == 1: # <<<<<<<<<<<<<< @@ -13374,7 +13425,7 @@ static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *__pyx_v_src, __pyx_t_2 = (((__pyx_v_tmpslice->shape[__pyx_v_i]) == 1) != 0); if (__pyx_t_2) { - /* "View.MemoryView":1236 + /* "View.MemoryView":1240 * for i in range(ndim): * if tmpslice.shape[i] == 1: * tmpslice.strides[i] = 0 # <<<<<<<<<<<<<< @@ -13383,7 +13434,7 @@ static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *__pyx_v_src, */ (__pyx_v_tmpslice->strides[__pyx_v_i]) = 0; - /* "View.MemoryView":1235 + /* "View.MemoryView":1239 * * for i in range(ndim): * if tmpslice.shape[i] == 1: # <<<<<<<<<<<<<< @@ -13393,7 +13444,7 @@ static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *__pyx_v_src, } } - /* "View.MemoryView":1238 + /* "View.MemoryView":1242 * tmpslice.strides[i] = 0 * * if slice_is_contig(src[0], order, ndim): # <<<<<<<<<<<<<< @@ -13403,7 +13454,7 @@ static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *__pyx_v_src, __pyx_t_2 = (__pyx_memviewslice_is_contig((__pyx_v_src[0]), __pyx_v_order, __pyx_v_ndim) != 0); if (__pyx_t_2) { - /* "View.MemoryView":1239 + /* "View.MemoryView":1243 * * if slice_is_contig(src[0], order, ndim): * memcpy(result, src.data, size) # <<<<<<<<<<<<<< @@ -13412,7 +13463,7 @@ static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *__pyx_v_src, */ (void)(memcpy(__pyx_v_result, __pyx_v_src->data, __pyx_v_size)); - /* "View.MemoryView":1238 + /* "View.MemoryView":1242 * tmpslice.strides[i] = 0 * * if slice_is_contig(src[0], order, ndim): # <<<<<<<<<<<<<< @@ -13422,7 +13473,7 @@ static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *__pyx_v_src, goto __pyx_L9; } - /* "View.MemoryView":1241 + /* "View.MemoryView":1245 * memcpy(result, src.data, size) * else: * copy_strided_to_strided(src, tmpslice, ndim, itemsize) # <<<<<<<<<<<<<< @@ -13434,7 +13485,7 @@ static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *__pyx_v_src, } __pyx_L9:; - /* "View.MemoryView":1243 + /* "View.MemoryView":1247 * copy_strided_to_strided(src, tmpslice, ndim, itemsize) * * return result # <<<<<<<<<<<<<< @@ -13444,7 +13495,7 @@ static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *__pyx_v_src, __pyx_r = __pyx_v_result; goto __pyx_L0; - /* "View.MemoryView":1205 + /* "View.MemoryView":1209 * * @cname('__pyx_memoryview_copy_data_to_temp') * cdef void *copy_data_to_temp(__Pyx_memviewslice *src, # <<<<<<<<<<<<<< @@ -13468,7 +13519,7 @@ static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *__pyx_v_src, return __pyx_r; } -/* "View.MemoryView":1248 +/* "View.MemoryView":1252 * * @cname('__pyx_memoryview_err_extents') * cdef int _err_extents(int i, Py_ssize_t extent1, # <<<<<<<<<<<<<< @@ -13488,20 +13539,20 @@ static int __pyx_memoryview_err_extents(int __pyx_v_i, Py_ssize_t __pyx_v_extent #endif __Pyx_RefNannySetupContext("_err_extents", 0); - /* "View.MemoryView":1251 + /* "View.MemoryView":1255 * Py_ssize_t extent2) except -1 with gil: * raise ValueError("got differing extents in dimension %d (got %d and %d)" % * (i, extent1, extent2)) # <<<<<<<<<<<<<< * * @cname('__pyx_memoryview_err_dim') */ - __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_i); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1251, __pyx_L1_error) + __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_i); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1255, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); - __pyx_t_2 = PyInt_FromSsize_t(__pyx_v_extent1); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1251, __pyx_L1_error) + __pyx_t_2 = PyInt_FromSsize_t(__pyx_v_extent1); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1255, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_2); - __pyx_t_3 = PyInt_FromSsize_t(__pyx_v_extent2); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1251, __pyx_L1_error) + __pyx_t_3 = PyInt_FromSsize_t(__pyx_v_extent2); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1255, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_3); - __pyx_t_4 = PyTuple_New(3); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1251, __pyx_L1_error) + __pyx_t_4 = PyTuple_New(3); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1255, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_4); __Pyx_GIVEREF(__pyx_t_1); PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_t_1); @@ -13513,24 +13564,24 @@ static int __pyx_memoryview_err_extents(int __pyx_v_i, Py_ssize_t __pyx_v_extent __pyx_t_2 = 0; __pyx_t_3 = 0; - /* "View.MemoryView":1250 + /* "View.MemoryView":1254 * cdef int _err_extents(int i, Py_ssize_t extent1, * Py_ssize_t extent2) except -1 with gil: * raise ValueError("got differing extents in dimension %d (got %d and %d)" % # <<<<<<<<<<<<<< * (i, extent1, extent2)) * */ - __pyx_t_3 = __Pyx_PyString_Format(__pyx_kp_s_got_differing_extents_in_dimensi, __pyx_t_4); 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if (unlikely(__pyx_t_6 == ((int)-1))) __PYX_ERR(1, 1294, __pyx_L1_error) + __pyx_t_6 = __pyx_memoryview_err_extents(__pyx_v_i, (__pyx_v_dst.shape[__pyx_v_i]), (__pyx_v_src.shape[__pyx_v_i])); if (unlikely(__pyx_t_6 == ((int)-1))) __PYX_ERR(1, 1298, __pyx_L1_error) } __pyx_L7:; - /* "View.MemoryView":1289 + /* "View.MemoryView":1293 * * for i in range(ndim): * if src.shape[i] != dst.shape[i]: # <<<<<<<<<<<<<< @@ -13969,7 +14020,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ */ } - /* "View.MemoryView":1296 + /* "View.MemoryView":1300 * _err_extents(i, dst.shape[i], src.shape[i]) * * if src.suboffsets[i] >= 0: # <<<<<<<<<<<<<< @@ -13979,16 +14030,16 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ __pyx_t_2 = (((__pyx_v_src.suboffsets[__pyx_v_i]) >= 0) != 0); if (__pyx_t_2) { - /* "View.MemoryView":1297 + /* "View.MemoryView":1301 * * if src.suboffsets[i] >= 0: * _err_dim(ValueError, "Dimension %d is not direct", i) # <<<<<<<<<<<<<< * * if slices_overlap(&src, &dst, ndim, itemsize): */ - __pyx_t_6 = __pyx_memoryview_err_dim(__pyx_builtin_ValueError, ((char *)"Dimension %d is not direct"), __pyx_v_i); if (unlikely(__pyx_t_6 == ((int)-1))) __PYX_ERR(1, 1297, __pyx_L1_error) + __pyx_t_6 = __pyx_memoryview_err_dim(__pyx_builtin_ValueError, ((char *)"Dimension %d is not direct"), __pyx_v_i); if (unlikely(__pyx_t_6 == ((int)-1))) __PYX_ERR(1, 1301, __pyx_L1_error) - /* "View.MemoryView":1296 + /* "View.MemoryView":1300 * _err_extents(i, dst.shape[i], src.shape[i]) * * if src.suboffsets[i] >= 0: # <<<<<<<<<<<<<< @@ -13998,7 +14049,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ } } - /* "View.MemoryView":1299 + /* "View.MemoryView":1303 * _err_dim(ValueError, "Dimension %d is not direct", i) * * if slices_overlap(&src, &dst, ndim, itemsize): # <<<<<<<<<<<<<< @@ -14008,7 +14059,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ __pyx_t_2 = (__pyx_slices_overlap((&__pyx_v_src), (&__pyx_v_dst), __pyx_v_ndim, __pyx_v_itemsize) != 0); if (__pyx_t_2) { - /* "View.MemoryView":1301 + /* "View.MemoryView":1305 * if slices_overlap(&src, &dst, ndim, itemsize): * * if not slice_is_contig(src, order, ndim): # <<<<<<<<<<<<<< @@ -14018,7 +14069,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ __pyx_t_2 = ((!(__pyx_memviewslice_is_contig(__pyx_v_src, __pyx_v_order, __pyx_v_ndim) != 0)) != 0); if (__pyx_t_2) { - /* "View.MemoryView":1302 + /* "View.MemoryView":1306 * * if not slice_is_contig(src, order, ndim): * order = get_best_order(&dst, ndim) # <<<<<<<<<<<<<< @@ -14027,7 +14078,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ */ __pyx_v_order = __pyx_get_best_slice_order((&__pyx_v_dst), __pyx_v_ndim); - /* "View.MemoryView":1301 + /* "View.MemoryView":1305 * if slices_overlap(&src, &dst, ndim, itemsize): * * if not slice_is_contig(src, order, ndim): # <<<<<<<<<<<<<< @@ -14036,17 +14087,17 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ */ } - /* "View.MemoryView":1304 + /* "View.MemoryView":1308 * order = get_best_order(&dst, ndim) * * tmpdata = copy_data_to_temp(&src, &tmp, order, ndim) # <<<<<<<<<<<<<< * src = tmp * */ - __pyx_t_7 = __pyx_memoryview_copy_data_to_temp((&__pyx_v_src), (&__pyx_v_tmp), __pyx_v_order, __pyx_v_ndim); if (unlikely(__pyx_t_7 == ((void *)NULL))) __PYX_ERR(1, 1304, __pyx_L1_error) + __pyx_t_7 = __pyx_memoryview_copy_data_to_temp((&__pyx_v_src), (&__pyx_v_tmp), __pyx_v_order, __pyx_v_ndim); if (unlikely(__pyx_t_7 == ((void *)NULL))) __PYX_ERR(1, 1308, __pyx_L1_error) __pyx_v_tmpdata = __pyx_t_7; - /* "View.MemoryView":1305 + /* "View.MemoryView":1309 * * tmpdata = copy_data_to_temp(&src, &tmp, order, ndim) * src = tmp # <<<<<<<<<<<<<< @@ -14055,7 +14106,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ */ __pyx_v_src = __pyx_v_tmp; - /* "View.MemoryView":1299 + /* "View.MemoryView":1303 * _err_dim(ValueError, "Dimension %d is not direct", i) * * if slices_overlap(&src, &dst, ndim, itemsize): # <<<<<<<<<<<<<< @@ -14064,7 +14115,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ */ } - /* "View.MemoryView":1307 + /* "View.MemoryView":1311 * src = tmp * * if not broadcasting: # <<<<<<<<<<<<<< @@ -14074,7 +14125,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ __pyx_t_2 = ((!(__pyx_v_broadcasting != 0)) != 0); if (__pyx_t_2) { - /* "View.MemoryView":1310 + /* "View.MemoryView":1314 * * * if slice_is_contig(src, 'C', ndim): # <<<<<<<<<<<<<< @@ -14084,7 +14135,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ __pyx_t_2 = (__pyx_memviewslice_is_contig(__pyx_v_src, 'C', __pyx_v_ndim) != 0); if (__pyx_t_2) { - /* "View.MemoryView":1311 + /* "View.MemoryView":1315 * * if slice_is_contig(src, 'C', ndim): * direct_copy = slice_is_contig(dst, 'C', ndim) # <<<<<<<<<<<<<< @@ -14093,7 +14144,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ */ __pyx_v_direct_copy = __pyx_memviewslice_is_contig(__pyx_v_dst, 'C', __pyx_v_ndim); - /* "View.MemoryView":1310 + /* "View.MemoryView":1314 * * * if slice_is_contig(src, 'C', ndim): # <<<<<<<<<<<<<< @@ -14103,7 +14154,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ goto __pyx_L12; } - /* "View.MemoryView":1312 + /* "View.MemoryView":1316 * if slice_is_contig(src, 'C', ndim): * direct_copy = slice_is_contig(dst, 'C', ndim) * elif slice_is_contig(src, 'F', ndim): # <<<<<<<<<<<<<< @@ -14113,7 +14164,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ __pyx_t_2 = (__pyx_memviewslice_is_contig(__pyx_v_src, 'F', __pyx_v_ndim) != 0); if (__pyx_t_2) { - /* "View.MemoryView":1313 + /* "View.MemoryView":1317 * direct_copy = slice_is_contig(dst, 'C', ndim) * elif slice_is_contig(src, 'F', ndim): * direct_copy = slice_is_contig(dst, 'F', ndim) # <<<<<<<<<<<<<< @@ -14122,7 +14173,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ */ __pyx_v_direct_copy = __pyx_memviewslice_is_contig(__pyx_v_dst, 'F', __pyx_v_ndim); - /* "View.MemoryView":1312 + /* "View.MemoryView":1316 * if slice_is_contig(src, 'C', ndim): * direct_copy = slice_is_contig(dst, 'C', ndim) * elif slice_is_contig(src, 'F', ndim): # <<<<<<<<<<<<<< @@ -14132,7 +14183,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ } __pyx_L12:; - /* "View.MemoryView":1315 + /* "View.MemoryView":1319 * direct_copy = slice_is_contig(dst, 'F', ndim) * * if direct_copy: # <<<<<<<<<<<<<< @@ -14142,7 +14193,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ __pyx_t_2 = (__pyx_v_direct_copy != 0); if (__pyx_t_2) { - /* "View.MemoryView":1317 + /* "View.MemoryView":1321 * if direct_copy: * * refcount_copying(&dst, dtype_is_object, ndim, False) # <<<<<<<<<<<<<< @@ -14151,7 +14202,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ */ __pyx_memoryview_refcount_copying((&__pyx_v_dst), __pyx_v_dtype_is_object, __pyx_v_ndim, 0); - /* "View.MemoryView":1318 + /* "View.MemoryView":1322 * * refcount_copying(&dst, dtype_is_object, ndim, False) * memcpy(dst.data, src.data, slice_get_size(&src, ndim)) # <<<<<<<<<<<<<< @@ -14160,7 +14211,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ */ (void)(memcpy(__pyx_v_dst.data, __pyx_v_src.data, __pyx_memoryview_slice_get_size((&__pyx_v_src), __pyx_v_ndim))); - /* "View.MemoryView":1319 + /* "View.MemoryView":1323 * refcount_copying(&dst, dtype_is_object, ndim, False) * memcpy(dst.data, src.data, slice_get_size(&src, ndim)) * refcount_copying(&dst, dtype_is_object, ndim, True) # <<<<<<<<<<<<<< @@ -14169,7 +14220,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ */ __pyx_memoryview_refcount_copying((&__pyx_v_dst), __pyx_v_dtype_is_object, __pyx_v_ndim, 1); - /* "View.MemoryView":1320 + /* "View.MemoryView":1324 * memcpy(dst.data, src.data, slice_get_size(&src, ndim)) * refcount_copying(&dst, dtype_is_object, ndim, True) * free(tmpdata) # <<<<<<<<<<<<<< @@ -14178,7 +14229,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ */ free(__pyx_v_tmpdata); - /* "View.MemoryView":1321 + /* "View.MemoryView":1325 * refcount_copying(&dst, dtype_is_object, ndim, True) * free(tmpdata) * return 0 # <<<<<<<<<<<<<< @@ -14188,7 +14239,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ __pyx_r = 0; goto __pyx_L0; - /* "View.MemoryView":1315 + /* "View.MemoryView":1319 * direct_copy = slice_is_contig(dst, 'F', ndim) * * if direct_copy: # <<<<<<<<<<<<<< @@ -14197,7 +14248,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ */ } - /* "View.MemoryView":1307 + /* "View.MemoryView":1311 * src = tmp * * if not broadcasting: # <<<<<<<<<<<<<< @@ -14206,7 +14257,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ */ } - /* "View.MemoryView":1323 + /* "View.MemoryView":1327 * return 0 * * if order == 'F' == get_best_order(&dst, ndim): # <<<<<<<<<<<<<< @@ -14220,25 +14271,25 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ __pyx_t_8 = (__pyx_t_2 != 0); if (__pyx_t_8) { - /* "View.MemoryView":1326 + /* "View.MemoryView":1330 * * * transpose_memslice(&src) # <<<<<<<<<<<<<< * transpose_memslice(&dst) * */ - __pyx_t_5 = __pyx_memslice_transpose((&__pyx_v_src)); if (unlikely(__pyx_t_5 == ((int)0))) __PYX_ERR(1, 1326, __pyx_L1_error) + __pyx_t_5 = __pyx_memslice_transpose((&__pyx_v_src)); if (unlikely(__pyx_t_5 == ((int)0))) __PYX_ERR(1, 1330, __pyx_L1_error) - /* "View.MemoryView":1327 + /* "View.MemoryView":1331 * * transpose_memslice(&src) * transpose_memslice(&dst) # <<<<<<<<<<<<<< * * refcount_copying(&dst, dtype_is_object, ndim, False) */ - __pyx_t_5 = __pyx_memslice_transpose((&__pyx_v_dst)); if (unlikely(__pyx_t_5 == ((int)0))) __PYX_ERR(1, 1327, __pyx_L1_error) + __pyx_t_5 = __pyx_memslice_transpose((&__pyx_v_dst)); if (unlikely(__pyx_t_5 == ((int)0))) __PYX_ERR(1, 1331, __pyx_L1_error) - /* "View.MemoryView":1323 + /* "View.MemoryView":1327 * return 0 * * if order == 'F' == get_best_order(&dst, ndim): # <<<<<<<<<<<<<< @@ -14247,7 +14298,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ */ } - /* "View.MemoryView":1329 + /* "View.MemoryView":1333 * transpose_memslice(&dst) * * refcount_copying(&dst, dtype_is_object, ndim, False) # <<<<<<<<<<<<<< @@ -14256,7 +14307,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ */ __pyx_memoryview_refcount_copying((&__pyx_v_dst), __pyx_v_dtype_is_object, __pyx_v_ndim, 0); - /* "View.MemoryView":1330 + /* "View.MemoryView":1334 * * refcount_copying(&dst, dtype_is_object, ndim, False) * copy_strided_to_strided(&src, &dst, ndim, itemsize) # <<<<<<<<<<<<<< @@ -14265,7 +14316,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ */ copy_strided_to_strided((&__pyx_v_src), (&__pyx_v_dst), __pyx_v_ndim, __pyx_v_itemsize); - /* "View.MemoryView":1331 + /* "View.MemoryView":1335 * refcount_copying(&dst, dtype_is_object, ndim, False) * copy_strided_to_strided(&src, &dst, ndim, itemsize) * refcount_copying(&dst, dtype_is_object, ndim, True) # <<<<<<<<<<<<<< @@ -14274,7 +14325,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ */ __pyx_memoryview_refcount_copying((&__pyx_v_dst), __pyx_v_dtype_is_object, __pyx_v_ndim, 1); - /* "View.MemoryView":1333 + /* "View.MemoryView":1337 * refcount_copying(&dst, dtype_is_object, ndim, True) * * free(tmpdata) # <<<<<<<<<<<<<< @@ -14283,7 +14334,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ */ free(__pyx_v_tmpdata); - /* "View.MemoryView":1334 + /* "View.MemoryView":1338 * * free(tmpdata) * return 0 # <<<<<<<<<<<<<< @@ -14293,7 +14344,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ __pyx_r = 0; goto __pyx_L0; - /* "View.MemoryView":1265 + /* "View.MemoryView":1269 * * @cname('__pyx_memoryview_copy_contents') * cdef int memoryview_copy_contents(__Pyx_memviewslice src, # <<<<<<<<<<<<<< @@ -14317,7 +14368,7 @@ static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_ return __pyx_r; } -/* "View.MemoryView":1337 +/* "View.MemoryView":1341 * * @cname('__pyx_memoryview_broadcast_leading') * cdef void broadcast_leading(__Pyx_memviewslice *mslice, # <<<<<<<<<<<<<< @@ -14332,7 +14383,7 @@ static void __pyx_memoryview_broadcast_leading(__Pyx_memviewslice *__pyx_v_mslic int __pyx_t_2; int __pyx_t_3; - /* "View.MemoryView":1341 + /* "View.MemoryView":1345 * int ndim_other) nogil: * cdef int i * cdef int offset = ndim_other - ndim # <<<<<<<<<<<<<< @@ -14341,7 +14392,7 @@ static void __pyx_memoryview_broadcast_leading(__Pyx_memviewslice *__pyx_v_mslic */ __pyx_v_offset = (__pyx_v_ndim_other - __pyx_v_ndim); - /* "View.MemoryView":1343 + /* "View.MemoryView":1347 * cdef int offset = ndim_other - ndim * * for i in range(ndim - 1, -1, -1): # <<<<<<<<<<<<<< @@ -14351,7 +14402,7 @@ static void __pyx_memoryview_broadcast_leading(__Pyx_memviewslice *__pyx_v_mslic for (__pyx_t_1 = (__pyx_v_ndim - 1); __pyx_t_1 > -1; __pyx_t_1-=1) { __pyx_v_i = __pyx_t_1; - /* "View.MemoryView":1344 + /* "View.MemoryView":1348 * * for i in range(ndim - 1, -1, -1): * mslice.shape[i + offset] = mslice.shape[i] # <<<<<<<<<<<<<< @@ -14360,7 +14411,7 @@ static void __pyx_memoryview_broadcast_leading(__Pyx_memviewslice *__pyx_v_mslic */ (__pyx_v_mslice->shape[(__pyx_v_i + __pyx_v_offset)]) = (__pyx_v_mslice->shape[__pyx_v_i]); - /* "View.MemoryView":1345 + /* "View.MemoryView":1349 * for i in range(ndim - 1, -1, -1): * mslice.shape[i + offset] = mslice.shape[i] * mslice.strides[i + offset] = mslice.strides[i] # <<<<<<<<<<<<<< @@ -14369,7 +14420,7 @@ static void __pyx_memoryview_broadcast_leading(__Pyx_memviewslice *__pyx_v_mslic */ (__pyx_v_mslice->strides[(__pyx_v_i + __pyx_v_offset)]) = (__pyx_v_mslice->strides[__pyx_v_i]); - /* "View.MemoryView":1346 + /* "View.MemoryView":1350 * mslice.shape[i + offset] = mslice.shape[i] * mslice.strides[i + offset] = mslice.strides[i] * mslice.suboffsets[i + offset] = mslice.suboffsets[i] # <<<<<<<<<<<<<< @@ -14379,7 +14430,7 @@ static void __pyx_memoryview_broadcast_leading(__Pyx_memviewslice *__pyx_v_mslic (__pyx_v_mslice->suboffsets[(__pyx_v_i + __pyx_v_offset)]) = (__pyx_v_mslice->suboffsets[__pyx_v_i]); } - /* "View.MemoryView":1348 + /* "View.MemoryView":1352 * mslice.suboffsets[i + offset] = mslice.suboffsets[i] * * for i in range(offset): # <<<<<<<<<<<<<< @@ -14391,7 +14442,7 @@ static void __pyx_memoryview_broadcast_leading(__Pyx_memviewslice *__pyx_v_mslic for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) { __pyx_v_i = __pyx_t_3; - /* "View.MemoryView":1349 + /* "View.MemoryView":1353 * * for i in range(offset): * mslice.shape[i] = 1 # <<<<<<<<<<<<<< @@ -14400,7 +14451,7 @@ static void __pyx_memoryview_broadcast_leading(__Pyx_memviewslice *__pyx_v_mslic */ (__pyx_v_mslice->shape[__pyx_v_i]) = 1; - /* "View.MemoryView":1350 + /* "View.MemoryView":1354 * for i in range(offset): * mslice.shape[i] = 1 * mslice.strides[i] = mslice.strides[0] # <<<<<<<<<<<<<< @@ -14409,7 +14460,7 @@ static void __pyx_memoryview_broadcast_leading(__Pyx_memviewslice *__pyx_v_mslic */ (__pyx_v_mslice->strides[__pyx_v_i]) = (__pyx_v_mslice->strides[0]); - /* "View.MemoryView":1351 + /* "View.MemoryView":1355 * mslice.shape[i] = 1 * mslice.strides[i] = mslice.strides[0] * mslice.suboffsets[i] = -1 # <<<<<<<<<<<<<< @@ -14419,7 +14470,7 @@ static void __pyx_memoryview_broadcast_leading(__Pyx_memviewslice *__pyx_v_mslic (__pyx_v_mslice->suboffsets[__pyx_v_i]) = -1L; } - /* "View.MemoryView":1337 + /* "View.MemoryView":1341 * * @cname('__pyx_memoryview_broadcast_leading') * cdef void broadcast_leading(__Pyx_memviewslice *mslice, # <<<<<<<<<<<<<< @@ -14430,7 +14481,7 @@ static void __pyx_memoryview_broadcast_leading(__Pyx_memviewslice *__pyx_v_mslic /* function exit code */ } -/* "View.MemoryView":1359 +/* "View.MemoryView":1363 * * @cname('__pyx_memoryview_refcount_copying') * cdef void refcount_copying(__Pyx_memviewslice *dst, bint dtype_is_object, # <<<<<<<<<<<<<< @@ -14441,7 +14492,7 @@ static void __pyx_memoryview_broadcast_leading(__Pyx_memviewslice *__pyx_v_mslic static void __pyx_memoryview_refcount_copying(__Pyx_memviewslice *__pyx_v_dst, int __pyx_v_dtype_is_object, int __pyx_v_ndim, int __pyx_v_inc) { int __pyx_t_1; - /* "View.MemoryView":1363 + /* "View.MemoryView":1367 * * * if dtype_is_object: # <<<<<<<<<<<<<< @@ -14451,7 +14502,7 @@ static void __pyx_memoryview_refcount_copying(__Pyx_memviewslice *__pyx_v_dst, i __pyx_t_1 = (__pyx_v_dtype_is_object != 0); if (__pyx_t_1) { - /* "View.MemoryView":1364 + /* "View.MemoryView":1368 * * if dtype_is_object: * refcount_objects_in_slice_with_gil(dst.data, dst.shape, # <<<<<<<<<<<<<< @@ -14460,7 +14511,7 @@ static void __pyx_memoryview_refcount_copying(__Pyx_memviewslice *__pyx_v_dst, i */ __pyx_memoryview_refcount_objects_in_slice_with_gil(__pyx_v_dst->data, __pyx_v_dst->shape, __pyx_v_dst->strides, __pyx_v_ndim, __pyx_v_inc); - /* "View.MemoryView":1363 + /* "View.MemoryView":1367 * * * if dtype_is_object: # <<<<<<<<<<<<<< @@ -14469,7 +14520,7 @@ static void __pyx_memoryview_refcount_copying(__Pyx_memviewslice *__pyx_v_dst, i */ } - /* "View.MemoryView":1359 + /* "View.MemoryView":1363 * * @cname('__pyx_memoryview_refcount_copying') * cdef void refcount_copying(__Pyx_memviewslice *dst, bint dtype_is_object, # <<<<<<<<<<<<<< @@ -14480,7 +14531,7 @@ static void __pyx_memoryview_refcount_copying(__Pyx_memviewslice *__pyx_v_dst, i /* function exit code */ } -/* "View.MemoryView":1368 +/* "View.MemoryView":1372 * * @cname('__pyx_memoryview_refcount_objects_in_slice_with_gil') * cdef void refcount_objects_in_slice_with_gil(char *data, Py_ssize_t *shape, # <<<<<<<<<<<<<< @@ -14495,7 +14546,7 @@ static void __pyx_memoryview_refcount_objects_in_slice_with_gil(char *__pyx_v_da #endif __Pyx_RefNannySetupContext("refcount_objects_in_slice_with_gil", 0); - /* "View.MemoryView":1371 + /* "View.MemoryView":1375 * Py_ssize_t *strides, int ndim, * bint inc) with gil: * refcount_objects_in_slice(data, shape, strides, ndim, inc) # <<<<<<<<<<<<<< @@ -14504,7 +14555,7 @@ static void __pyx_memoryview_refcount_objects_in_slice_with_gil(char *__pyx_v_da */ __pyx_memoryview_refcount_objects_in_slice(__pyx_v_data, __pyx_v_shape, __pyx_v_strides, __pyx_v_ndim, __pyx_v_inc); - /* "View.MemoryView":1368 + /* "View.MemoryView":1372 * * @cname('__pyx_memoryview_refcount_objects_in_slice_with_gil') * cdef void refcount_objects_in_slice_with_gil(char *data, Py_ssize_t *shape, # <<<<<<<<<<<<<< @@ -14519,7 +14570,7 @@ static void __pyx_memoryview_refcount_objects_in_slice_with_gil(char *__pyx_v_da #endif } -/* "View.MemoryView":1374 +/* "View.MemoryView":1378 * * @cname('__pyx_memoryview_refcount_objects_in_slice') * cdef void refcount_objects_in_slice(char *data, Py_ssize_t *shape, # <<<<<<<<<<<<<< @@ -14536,7 +14587,7 @@ static void __pyx_memoryview_refcount_objects_in_slice(char *__pyx_v_data, Py_ss int __pyx_t_4; 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- /* "View.MemoryView":1380 + /* "View.MemoryView":1384 * for i in range(shape[0]): * if ndim == 1: * if inc: # <<<<<<<<<<<<<< @@ -14587,7 +14638,7 @@ static void __pyx_memoryview_refcount_objects_in_slice(char *__pyx_v_data, Py_ss goto __pyx_L6; } - /* "View.MemoryView":1383 + /* "View.MemoryView":1387 * Py_INCREF(( data)[0]) * else: * Py_DECREF(( data)[0]) # <<<<<<<<<<<<<< @@ -14599,7 +14650,7 @@ static void __pyx_memoryview_refcount_objects_in_slice(char *__pyx_v_data, Py_ss } __pyx_L6:; - /* "View.MemoryView":1379 + /* "View.MemoryView":1383 * * for i in range(shape[0]): * if ndim == 1: # <<<<<<<<<<<<<< @@ -14609,7 +14660,7 @@ static void __pyx_memoryview_refcount_objects_in_slice(char *__pyx_v_data, Py_ss goto __pyx_L5; } - /* "View.MemoryView":1385 + /* "View.MemoryView":1389 * Py_DECREF(( data)[0]) * else: * refcount_objects_in_slice(data, shape + 1, strides + 1, # <<<<<<<<<<<<<< @@ -14618,7 +14669,7 @@ static void __pyx_memoryview_refcount_objects_in_slice(char *__pyx_v_data, Py_ss */ /*else*/ { - /* "View.MemoryView":1386 + /* "View.MemoryView":1390 * else: * refcount_objects_in_slice(data, shape + 1, strides + 1, * ndim - 1, inc) # <<<<<<<<<<<<<< @@ -14629,7 +14680,7 @@ static void __pyx_memoryview_refcount_objects_in_slice(char *__pyx_v_data, Py_ss } __pyx_L5:; - /* "View.MemoryView":1388 + /* "View.MemoryView":1392 * ndim - 1, inc) * * data += strides[0] # <<<<<<<<<<<<<< @@ -14639,7 +14690,7 @@ static void __pyx_memoryview_refcount_objects_in_slice(char *__pyx_v_data, Py_ss __pyx_v_data = (__pyx_v_data + (__pyx_v_strides[0])); } - /* "View.MemoryView":1374 + /* "View.MemoryView":1378 * * @cname('__pyx_memoryview_refcount_objects_in_slice') * cdef void refcount_objects_in_slice(char *data, Py_ssize_t *shape, # <<<<<<<<<<<<<< @@ -14651,7 +14702,7 @@ static void __pyx_memoryview_refcount_objects_in_slice(char *__pyx_v_data, Py_ss __Pyx_RefNannyFinishContext(); } -/* "View.MemoryView":1394 +/* "View.MemoryView":1398 * * @cname('__pyx_memoryview_slice_assign_scalar') * cdef void slice_assign_scalar(__Pyx_memviewslice *dst, int ndim, # <<<<<<<<<<<<<< @@ -14661,7 +14712,7 @@ static void __pyx_memoryview_refcount_objects_in_slice(char *__pyx_v_data, Py_ss static void __pyx_memoryview_slice_assign_scalar(__Pyx_memviewslice *__pyx_v_dst, int __pyx_v_ndim, size_t __pyx_v_itemsize, void *__pyx_v_item, int __pyx_v_dtype_is_object) { - /* "View.MemoryView":1397 + /* "View.MemoryView":1401 * size_t itemsize, void *item, * bint dtype_is_object) nogil: * refcount_copying(dst, dtype_is_object, ndim, False) # <<<<<<<<<<<<<< @@ -14670,7 +14721,7 @@ static void __pyx_memoryview_slice_assign_scalar(__Pyx_memviewslice *__pyx_v_dst */ __pyx_memoryview_refcount_copying(__pyx_v_dst, __pyx_v_dtype_is_object, __pyx_v_ndim, 0); - /* "View.MemoryView":1398 + /* "View.MemoryView":1402 * bint dtype_is_object) nogil: * refcount_copying(dst, dtype_is_object, ndim, False) * _slice_assign_scalar(dst.data, dst.shape, dst.strides, ndim, # <<<<<<<<<<<<<< @@ -14679,7 +14730,7 @@ static void __pyx_memoryview_slice_assign_scalar(__Pyx_memviewslice *__pyx_v_dst */ __pyx_memoryview__slice_assign_scalar(__pyx_v_dst->data, __pyx_v_dst->shape, __pyx_v_dst->strides, __pyx_v_ndim, __pyx_v_itemsize, __pyx_v_item); - /* "View.MemoryView":1400 + /* "View.MemoryView":1404 * _slice_assign_scalar(dst.data, dst.shape, dst.strides, ndim, * itemsize, item) * refcount_copying(dst, dtype_is_object, ndim, True) # <<<<<<<<<<<<<< @@ -14688,7 +14739,7 @@ static void __pyx_memoryview_slice_assign_scalar(__Pyx_memviewslice *__pyx_v_dst */ __pyx_memoryview_refcount_copying(__pyx_v_dst, __pyx_v_dtype_is_object, __pyx_v_ndim, 1); - /* "View.MemoryView":1394 + /* "View.MemoryView":1398 * * @cname('__pyx_memoryview_slice_assign_scalar') * cdef void slice_assign_scalar(__Pyx_memviewslice *dst, int ndim, # <<<<<<<<<<<<<< @@ -14699,7 +14750,7 @@ static void __pyx_memoryview_slice_assign_scalar(__Pyx_memviewslice *__pyx_v_dst /* function exit code */ } -/* "View.MemoryView":1404 +/* "View.MemoryView":1408 * * @cname('__pyx_memoryview__slice_assign_scalar') * cdef void _slice_assign_scalar(char *data, Py_ssize_t *shape, # <<<<<<<<<<<<<< @@ -14716,7 +14767,7 @@ static void __pyx_memoryview__slice_assign_scalar(char *__pyx_v_data, Py_ssize_t Py_ssize_t __pyx_t_3; Py_ssize_t __pyx_t_4; - /* "View.MemoryView":1408 + /* "View.MemoryView":1412 * size_t itemsize, void *item) nogil: * cdef Py_ssize_t i * cdef Py_ssize_t stride = strides[0] # <<<<<<<<<<<<<< @@ -14725,7 +14776,7 @@ static void __pyx_memoryview__slice_assign_scalar(char *__pyx_v_data, Py_ssize_t */ __pyx_v_stride = (__pyx_v_strides[0]); - /* "View.MemoryView":1409 + /* "View.MemoryView":1413 * cdef Py_ssize_t i * cdef Py_ssize_t stride = strides[0] * cdef Py_ssize_t extent = shape[0] # <<<<<<<<<<<<<< @@ -14734,7 +14785,7 @@ static void __pyx_memoryview__slice_assign_scalar(char *__pyx_v_data, Py_ssize_t */ __pyx_v_extent = (__pyx_v_shape[0]); - /* "View.MemoryView":1411 + /* "View.MemoryView":1415 * cdef Py_ssize_t extent = shape[0] * * if ndim == 1: # <<<<<<<<<<<<<< @@ -14744,7 +14795,7 @@ static void __pyx_memoryview__slice_assign_scalar(char *__pyx_v_data, Py_ssize_t __pyx_t_1 = ((__pyx_v_ndim == 1) != 0); if (__pyx_t_1) { - /* "View.MemoryView":1412 + /* "View.MemoryView":1416 * * if ndim == 1: * for i in range(extent): # <<<<<<<<<<<<<< @@ -14756,7 +14807,7 @@ static void __pyx_memoryview__slice_assign_scalar(char *__pyx_v_data, Py_ssize_t for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { __pyx_v_i = __pyx_t_4; - /* "View.MemoryView":1413 + /* "View.MemoryView":1417 * if ndim == 1: * for i in range(extent): * memcpy(data, item, itemsize) # <<<<<<<<<<<<<< @@ -14765,7 +14816,7 @@ static void __pyx_memoryview__slice_assign_scalar(char *__pyx_v_data, Py_ssize_t */ (void)(memcpy(__pyx_v_data, __pyx_v_item, __pyx_v_itemsize)); - /* "View.MemoryView":1414 + /* "View.MemoryView":1418 * for i in range(extent): * memcpy(data, item, itemsize) * data += stride # <<<<<<<<<<<<<< @@ -14775,7 +14826,7 @@ static void __pyx_memoryview__slice_assign_scalar(char *__pyx_v_data, Py_ssize_t __pyx_v_data = (__pyx_v_data + __pyx_v_stride); } - /* "View.MemoryView":1411 + /* "View.MemoryView":1415 * cdef Py_ssize_t extent = shape[0] * * if ndim == 1: # <<<<<<<<<<<<<< @@ -14785,7 +14836,7 @@ static void __pyx_memoryview__slice_assign_scalar(char *__pyx_v_data, Py_ssize_t goto __pyx_L3; } - /* "View.MemoryView":1416 + /* "View.MemoryView":1420 * data += stride * else: * for i in range(extent): # <<<<<<<<<<<<<< @@ -14798,7 +14849,7 @@ static void __pyx_memoryview__slice_assign_scalar(char *__pyx_v_data, Py_ssize_t for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { __pyx_v_i = __pyx_t_4; - /* "View.MemoryView":1417 + /* "View.MemoryView":1421 * else: * for i in range(extent): * _slice_assign_scalar(data, shape + 1, strides + 1, # <<<<<<<<<<<<<< @@ -14807,7 +14858,7 @@ static void __pyx_memoryview__slice_assign_scalar(char *__pyx_v_data, Py_ssize_t */ __pyx_memoryview__slice_assign_scalar(__pyx_v_data, (__pyx_v_shape + 1), (__pyx_v_strides + 1), (__pyx_v_ndim - 1), __pyx_v_itemsize, __pyx_v_item); - /* "View.MemoryView":1419 + /* "View.MemoryView":1423 * _slice_assign_scalar(data, shape + 1, strides + 1, * ndim - 1, itemsize, item) * data += stride # <<<<<<<<<<<<<< @@ -14819,7 +14870,7 @@ static void __pyx_memoryview__slice_assign_scalar(char *__pyx_v_data, Py_ssize_t } __pyx_L3:; - /* "View.MemoryView":1404 + /* "View.MemoryView":1408 * * @cname('__pyx_memoryview__slice_assign_scalar') * cdef void _slice_assign_scalar(char *data, Py_ssize_t *shape, # <<<<<<<<<<<<<< @@ -15394,6 +15445,9 @@ static PyTypeObject __pyx_type___pyx_array = { #if PY_VERSION_HEX >= 0x030400a1 0, /*tp_finalize*/ #endif + #if PY_VERSION_HEX >= 0x030800b1 + 0, /*tp_vectorcall*/ + #endif }; 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/*--- Constants init code ---*/ - if (__Pyx_InitCachedConstants() < 0) __PYX_ERR(0, 1, __pyx_L1_error) + if (__Pyx_InitCachedConstants() < 0) goto __pyx_L1_error; /*--- Global type/function init code ---*/ (void)__Pyx_modinit_global_init_code(); (void)__Pyx_modinit_variable_export_code(); @@ -16755,29 +16825,29 @@ if (!__Pyx_RefNanny) { __pyx_t_2[7] = PyThread_allocate_lock(); memcpy(&(__pyx_memoryview_thread_locks[0]), __pyx_t_2, sizeof(__pyx_memoryview_thread_locks[0]) * (8)); - /* "View.MemoryView":545 + /* "View.MemoryView":549 * info.obj = self * * __pyx_getbuffer = capsule( &__pyx_memoryview_getbuffer, "getbuffer(obj, view, flags)") # <<<<<<<<<<<<<< * * */ - __pyx_t_1 = __pyx_capsule_create(((void *)(&__pyx_memoryview_getbuffer)), ((char *)"getbuffer(obj, view, flags)")); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 545, __pyx_L1_error) + __pyx_t_1 = __pyx_capsule_create(((void *)(&__pyx_memoryview_getbuffer)), ((char *)"getbuffer(obj, view, flags)")); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 549, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); 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+ if (offset) { +#if CYTHON_COMPILING_IN_CPYTHON + dictptr = (likely(offset > 0)) ? (PyObject **) ((char *)obj + offset) : _PyObject_GetDictPtr(obj); +#else + dictptr = _PyObject_GetDictPtr(obj); +#endif + } + return (dictptr && *dictptr) ? __PYX_GET_DICT_VERSION(*dictptr) : 0; +} +static CYTHON_INLINE int __Pyx_object_dict_version_matches(PyObject* obj, PY_UINT64_T tp_dict_version, PY_UINT64_T obj_dict_version) { + PyObject *dict = Py_TYPE(obj)->tp_dict; + if (unlikely(!dict) || unlikely(tp_dict_version != __PYX_GET_DICT_VERSION(dict))) + return 0; + return obj_dict_version == __Pyx_get_object_dict_version(obj); +} +#endif + /* GetModuleGlobalName */ #if CYTHON_USE_DICT_VERSIONS static PyObject *__Pyx__GetModuleGlobalName(PyObject *name, PY_UINT64_T *dict_version, PyObject **dict_cached_value) @@ -19082,7 +19174,7 @@ static int __Pyx_BufFmt_ParseNumber(const char** ts) { return -1; } else { count = *t++ - '0'; - while (*t >= '0' && *t < '9') { + while (*t >= '0' && *t <= '9') { count *= 10; count += *t++ - '0'; } @@ -19656,7 +19748,7 @@ __pyx_check_suboffsets(Py_buffer *buf, int dim, CYTHON_UNUSED int ndim, int spec } } if (spec & __Pyx_MEMVIEW_PTR) { - if (!buf->suboffsets || (buf->suboffsets && buf->suboffsets[dim] < 0)) { + if (!buf->suboffsets || (buf->suboffsets[dim] < 0)) { PyErr_Format(PyExc_ValueError, "Buffer is not indirectly accessible " "in dimension %d.", dim); diff --git a/openmmtools/multistate/multistateanalyzer.py b/openmmtools/multistate/multistateanalyzer.py index fc484bd58..f6ea8ac8f 100644 --- a/openmmtools/multistate/multistateanalyzer.py +++ b/openmmtools/multistate/multistateanalyzer.py @@ -1170,9 +1170,9 @@ class MultiStateSamplerAnalyzer(PhaseAnalyzer): def __init__(self, *args, unbias_restraint=True, restraint_energy_cutoff='auto', restraint_distance_cutoff='auto', **kwargs): + # Warn that API is experimental - import warnings - warnings.warn('Warning: The openmmtools.multistate API is experimental and may change in future releases') + logger.warn('Warning: The openmmtools.multistate API is experimental and may change in future releases') # super() calls clear() that initialize the cached variables. super().__init__(*args, **kwargs) diff --git a/openmmtools/multistate/multistatereporter.py b/openmmtools/multistate/multistatereporter.py index 44aa08705..fb6dc8423 100644 --- a/openmmtools/multistate/multistatereporter.py +++ b/openmmtools/multistate/multistatereporter.py @@ -34,8 +34,8 @@ import time import uuid import yaml -import logging import warnings +import logging import collections import numpy as np @@ -112,9 +112,8 @@ def __init__(self, storage, open_mode=None, analysis_particle_indices=()): # Warn that API is experimental - import warnings - warnings.warn('Warning: The openmmtools.multistate API is experimental and may change in future releases') - + logger.warn('Warning: The openmmtools.multistate API is experimental and may change in future releases') + # Handle checkpointing if type(checkpoint_interval) != int: raise ValueError("checkpoint_interval must be an integer!") diff --git a/openmmtools/multistate/multistatesampler.py b/openmmtools/multistate/multistatesampler.py index c333ac0b6..41fb1859e 100644 --- a/openmmtools/multistate/multistatesampler.py +++ b/openmmtools/multistate/multistatesampler.py @@ -141,8 +141,7 @@ def __init__(self, mcmc_moves=None, number_of_iterations=1, locality=None): # Warn that API is experimental - import warnings - warnings.warn('Warning: The openmmtools.multistate API is experimental and may change in future releases') + logger.warn('Warning: The openmmtools.multistate API is experimental and may change in future releases') # These will be set on initialization. See function # create() for explanation of single variables. diff --git a/openmmtools/tests/test_sampling.py b/openmmtools/tests/test_sampling.py index d13d0cfb2..b690084a2 100644 --- a/openmmtools/tests/test_sampling.py +++ b/openmmtools/tests/test_sampling.py @@ -32,8 +32,12 @@ from simtk import openmm, unit import mpiplus -from openmmtools.multistate import MultiStateReporter, MultiStateSampler, ReplicaExchangeSampler, ParallelTemperingSampler, SAMSSampler -from openmmtools.multistate import ReplicaExchangeAnalyzer, SAMSAnalyzer +from openmmtools.multistate import MultiStateReporter +from openmmtools.multistate import MultiStateSampler, MultiStateSamplerAnalyzer +from openmmtools.multistate import ReplicaExchangeSampler, ReplicaExchangeAnalyzer +from openmmtools.multistate import ParallelTemperingSampler, ParallelTemperingAnalyzer +from openmmtools.multistate import SAMSSampler, SAMSAnalyzer + from openmmtools.multistate.multistatereporter import _DictYamlLoader # quiet down some citation spam @@ -64,289 +68,162 @@ def check_thermodynamic_states_equality(original_states, restored_states): assert original_state.lambda_sterics == restored_state.lambda_sterics assert original_state.lambda_electrostatics == restored_state.lambda_electrostatics +# ============================================================================== +# Harmonic oscillator free energy test +# ============================================================================== -def compute_harmonic_oscillator_expectations(K, temperature): - """Compute mean and variance of potential and kinetic energies for a 3D harmonic oscillator. - - Notes - ----- - Numerical quadrature is used to compute the mean and standard deviation of the potential energy. - Mean and standard deviation of the kinetic energy, as well as the absolute free energy, is computed analytically. - - Parameters - ---------- - K : simtk.unit.Quantity - Spring constant. - temperature : simtk.unit.Quantity - Temperature. - - Returns - ------- - values : dict - - TODO - - Replace this with built-in analytical expectations - - """ +class TestHarmonicOscillatorsMultiStateSampler(object): + """Test multistate sampler can compute free energies of harmonic oscillator""" - values = dict() + # ------------------------------------ + # VARIABLES TO SET FOR EACH TEST CLASS + # ------------------------------------ - # Compute thermal energy and inverse temperature from specified temperature. - kB = unit.BOLTZMANN_CONSTANT_kB * unit.AVOGADRO_CONSTANT_NA - kT = kB * temperature # thermal energy - beta = 1.0 / kT # inverse temperature + N_SAMPLERS = 3 + N_STATES = 5 # number of thermodynamic states to sample; two additional unsampled states will be added + N_ITERATIONS = 500 # number of iterations + SAMPLER = MultiStateSampler + ANALYZER = MultiStateSamplerAnalyzer - # Compute standard deviation along one dimension. - sigma = 1.0 / unit.sqrt(beta * K) + @classmethod + def setup_class(cls): + # Configure the global context cache to use the Reference platform + from openmmtools import cache + platform = openmm.Platform.getPlatformByName('Reference') + cls.old_global_context_cache = cache.global_context_cache + cache.global_context_cache = cache.ContextCache(platform=platform) - # Define limits of integration along r. - r_min = 0.0 * unit.nanometers # initial value for integration - r_max = 10.0 * sigma # maximum radius to integrate to + # Set oscillators to mass of carbon atom + mass = 12.0 * unit.amu - # Compute mean and std dev of potential energy. - V = lambda r : (K/2.0) * (r*unit.nanometers)**2 / unit.kilojoules_per_mole # potential in kJ/mol, where r in nm - q = lambda r : 4.0 * math.pi * r**2 * math.exp(-beta * (K/2.0) * (r*unit.nanometers)**2) # q(r), where r in nm - (IqV2, dIqV2) = scipy.integrate.quad(lambda r : q(r) * V(r)**2, r_min / unit.nanometers, r_max / unit.nanometers) - (IqV, dIqV) = scipy.integrate.quad(lambda r : q(r) * V(r), r_min / unit.nanometers, r_max / unit.nanometers) - (Iq, dIq) = scipy.integrate.quad(lambda r : q(r), r_min / unit.nanometers, r_max / unit.nanometers) - values['potential'] = dict() - values['potential']['mean'] = (IqV / Iq) * unit.kilojoules_per_mole - values['potential']['stddev'] = (IqV2 / Iq) * unit.kilojoules_per_mole + # Translate the sampler states to be different one from each other. + n_particles = 1 + positions = unit.Quantity(np.zeros([n_particles,3]), unit.angstroms) + cls.sampler_states = [ + mmtools.states.SamplerState(positions=positions) + for sampler_index in range(cls.N_SAMPLERS)] + + # Generate list of thermodynamic states and analytical free energies + # This list includes both sampled and two unsampled states + thermodynamic_states = list() + temperature = 300 * unit.kelvin + f_i = np.zeros([cls.N_STATES+2]) # f_i[state_index] is the dimensionless free energy of state `state_index` + for state_index in range(cls.N_STATES + 2): + sigma = (1.0 + 0.2 * state_index) * unit.angstroms # compute reasonable standard deviation with good overlap + kT = kB * temperature # compute thermal energy + K = kT / sigma**2 # compute spring constant + testsystem = testsystems.HarmonicOscillator(K=K, mass=mass) + thermodynamic_state = mmtools.states.ThermodynamicState(testsystem.system, temperature) + thermodynamic_states.append(thermodynamic_state) + + # Store analytical reduced free energy + f_i[state_index] = - np.log(2 * np.pi * (sigma / unit.angstroms)**2) * (3.0/2.0) + + # delta_f_ij_analytical[i,j] = f_i_analytical[j] - f_i_analytical[i] + cls.f_i_analytical = f_i + cls.delta_f_ij_analytical = f_i - f_i[:,np.newaxis] + + # Define sampled and unsampled states. + cls.nstates = cls.N_STATES + cls.unsampled_states = [thermodynamic_states[0], thermodynamic_states[-1]] # first and last + cls.thermodynamic_states = thermodynamic_states[1:-1] # intermediate states - # Compute mean and std dev of kinetic energy. - values['kinetic'] = dict() - values['kinetic']['mean'] = (3./2.) * kT - values['kinetic']['stddev'] = math.sqrt(3./2.) * kT + @classmethod + def teardown_class(cls): + # Restore global context cache + from openmmtools import cache + cache.global_context_cache = cls.old_global_context_cache + + def run(self, include_unsampled_states=False): + # Create and configure simulation object + move = mmtools.mcmc.MCDisplacementMove(displacement_sigma=1.0*unit.angstroms) + simulation = self.SAMPLER(mcmc_moves=move, number_of_iterations=self.N_ITERATIONS) + + # Define file for temporary storage. + with mmtools.utils.temporary_directory() as tmp_dir: + storage = os.path.join(tmp_dir, 'test_storage.nc') + reporter = MultiStateReporter(storage, checkpoint_interval=self.N_ITERATIONS) + + if include_unsampled_states: + simulation.create(self.thermodynamic_states, self.sampler_states, reporter, + unsampled_thermodynamic_states=self.unsampled_states) + else: + simulation.create(self.thermodynamic_states, self.sampler_states, reporter) - # Compute dimensionless free energy. - # f = - \ln \int_{-\infty}^{+\infty} \exp[-\beta K x^2 / 2] - # = - \ln \int_{-\infty}^{+\infty} \exp[-x^2 / 2 \sigma^2] - # = - \ln [\sqrt{2 \pi} \sigma] - values['f'] = - np.log(2 * np.pi * (sigma / unit.angstroms)**2) * (3.0/2.0) + # Run simulation without debug logging + import logging + logger = logging.getLogger() + logger.setLevel(logging.CRITICAL) + simulation.run() - return values + # Create Analyzer. + analyzer = self.ANALYZER(reporter) + # Check if free energies have the right shape and deviations exceed tolerance + delta_f_ij, delta_f_ij_stderr = analyzer.get_free_energy() + nstates, _ = delta_f_ij.shape -# ============================================================================== -# TEST ANALYSIS REPLICA EXCHANGE -# ============================================================================== - -@attr('slow') # Skip on Travis-CI -def test_replica_exchange_harmonic_oscillator(verbose=False, verbose_simulation=False): - """Test harmonic oscillator free energies for replica-exchange.""" - # Define mass of carbon atom. - mass = 12.0 * unit.amu - - sampler_states = list() - thermodynamic_states = list() - analytical_results = list() - f_i_analytical = list() # Dimensionless free energies. - u_i_analytical = list() # Reduced potentials. - - # Define thermodynamic states. - Ks = [500.00, 400.0, 300.0] * unit.kilocalories_per_mole / unit.angstroms**2 # Spring constants. - temperatures = [300.0, 350.0, 400.0] * unit.kelvin # Temperatures. - for (K, temperature) in zip(Ks, temperatures): - # Create harmonic oscillator system. - testsystem = testsystems.HarmonicOscillator(K=K, mass=mass, mm=openmm) - - # Create thermodynamic state and save positions. - system, positions = [testsystem.system, testsystem.positions] - sampler_states.append(mmtools.states.SamplerState(positions)) - thermodynamic_states.append(mmtools.states.ThermodynamicState(system=system, temperature=temperature)) - - # Store analytical results. - results = compute_harmonic_oscillator_expectations(K, temperature) - analytical_results.append(results) - f_i_analytical.append(results['f']) - reduced_potential = results['potential']['mean'] / (kB * temperature) - u_i_analytical.append(reduced_potential) - - # Compute analytical Delta_f_ij - nstates = len(f_i_analytical) - f_i_analytical = np.array(f_i_analytical) - u_i_analytical = np.array(u_i_analytical) - s_i_analytical = u_i_analytical - f_i_analytical - Delta_f_ij_analytical = np.zeros([nstates, nstates], np.float64) - Delta_u_ij_analytical = np.zeros([nstates, nstates], np.float64) - Delta_s_ij_analytical = np.zeros([nstates, nstates], np.float64) - for i in range(nstates): - for j in range(nstates): - Delta_f_ij_analytical[i, j] = f_i_analytical[j] - f_i_analytical[i] - Delta_u_ij_analytical[i, j] = u_i_analytical[j] - u_i_analytical[i] - Delta_s_ij_analytical[i, j] = s_i_analytical[j] - s_i_analytical[i] - - # Create and configure simulation object. - move = mmtools.mcmc.LangevinDynamicsMove(timestep=2.0*unit.femtoseconds, - collision_rate=20.0/unit.picosecond, - n_steps=500, reassign_velocities=True) - simulation = ReplicaExchangeSampler(mcmc_moves=move, number_of_iterations=400) - - # Define file for temporary storage. - with mmtools.utils.temporary_directory() as tmp_dir: - storage = os.path.join(tmp_dir, 'test_storage.nc') - reporter = MultiStateReporter(storage, checkpoint_interval=1) - simulation.create(thermodynamic_states, sampler_states, reporter) - - # Run simulation we keep the debug info off during the simulation - # to not clog the output, and reactivate it for analysis. - simulation.run() - - # Create Analyzer. - analyzer = ReplicaExchangeAnalyzer(reporter) - - # TODO: Check if deviations exceed tolerance. - Delta_f_ij, dDelta_f_ij = analyzer.get_free_energy() - error = np.abs(Delta_f_ij - Delta_f_ij_analytical) - indices = np.where(dDelta_f_ij > 0.0) - nsigma = np.zeros([nstates,nstates], np.float32) - nsigma[indices] = error[indices] / dDelta_f_ij[indices] - MAX_SIGMA = 6.0 # maximum allowed number of standard errors - if np.any(nsigma > MAX_SIGMA): - print("Delta_f_ij") - print(Delta_f_ij) - print("Delta_f_ij_analytical") - print(Delta_f_ij_analytical) - print("error") - print(error) - print("stderr") - print(dDelta_f_ij) - print("nsigma") - print(nsigma) - raise Exception("Dimensionless free energy difference exceeds MAX_SIGMA of %.1f" % MAX_SIGMA) - - Delta_u_ij, dDelta_u_ij = analyzer.get_enthalpy() - error = Delta_u_ij - Delta_u_ij_analytical - nsigma = np.zeros([nstates,nstates], np.float32) - nsigma[indices] = error[indices] / dDelta_f_ij[indices] - if np.any(nsigma > MAX_SIGMA): - print("Delta_u_ij") - print(Delta_u_ij) - print("Delta_u_ij_analytical") - print(Delta_u_ij_analytical) - print("error") - print(error) - print("nsigma") - print(nsigma) - raise Exception("Dimensionless potential energy difference exceeds MAX_SIGMA of %.1f" % MAX_SIGMA) + if include_unsampled_states: + nstates_expected = self.N_STATES+2 # We expect N_STATES plus two additional states + delta_f_ij_analytical = self.delta_f_ij_analytical # Use the whole matrix + else: + nstates_expected = self.N_STATES # We expect only N_STATES + delta_f_ij_analytical = self.delta_f_ij_analytical[1:-1,1:-1] # Use only the intermediate, sampled states + + assert nstates == nstates_expected, \ + f'analyzer.get_free_energy() returned {delta_f_ij.shape} but expected {nstates_expected,nstates_expected}' + + error = np.abs(delta_f_ij - delta_f_ij_analytical) + indices = np.where(delta_f_ij_stderr > 0.0) + nsigma = np.zeros([nstates,nstates], np.float32) + nsigma[indices] = error[indices] / delta_f_ij_stderr[indices] + MAX_SIGMA = 6.0 # maximum allowed number of standard errors + if np.any(nsigma > MAX_SIGMA): + np.set_printoptions(precision=3) + print("delta_f_ij") + print(delta_f_ij) + print("delta_f_ij_analytical") + print(delta_f_ij_analytical) + print("error") + print(error) + print("stderr") + print(delta_f_ij_stderr) + print("nsigma") + print(nsigma) + raise Exception("Dimensionless free energy difference exceeds MAX_SIGMA of %.1f" % MAX_SIGMA) # Clean up. del simulation - if verbose: - print("PASSED.") + def test_with_unsampled_states(self): + self.run(include_unsampled_states=True) + def test_without_unsampled_states(self): + self.run(include_unsampled_states=False) -# ============================================================================== -# TEST ANALYSIS SAMS -# ============================================================================== +class TestHarmonicOscillatorsReplicaExchangeSampler(TestHarmonicOscillatorsMultiStateSampler): + """Test replica-exchange sampler can compute free energies of harmonic oscillator""" -@attr('slow') # Skip on Travis-CI -def test_sams_harmonic_oscillator(verbose=False, verbose_simulation=False): - """Harmonic oscillator free energies for SAMS.""" - # Define mass of carbon atom. - mass = 12.0 * unit.amu - - sampler_states = list() - thermodynamic_states = list() - analytical_results = list() - f_i_analytical = list() # Dimensionless free energies. - u_i_analytical = list() # Reduced potentials. - - # Define thermodynamic states. - Ks = [500.00, 400.0, 300.0] * unit.kilocalories_per_mole / unit.angstroms**2 # Spring constants. - temperatures = [300.0, 350.0, 400.0] * unit.kelvin # Temperatures. - for (K, temperature) in zip(Ks, temperatures): - # Create harmonic oscillator system. - testsystem = testsystems.HarmonicOscillator(K=K, mass=mass, mm=openmm) - - # Create thermodynamic state and save positions. - system, positions = [testsystem.system, testsystem.positions] - sampler_states.append(mmtools.states.SamplerState(positions)) - thermodynamic_states.append(mmtools.states.ThermodynamicState(system=system, temperature=temperature)) - - # Store analytical results. - results = compute_harmonic_oscillator_expectations(K, temperature) - analytical_results.append(results) - f_i_analytical.append(results['f']) - reduced_potential = results['potential']['mean'] / (kB * temperature) - u_i_analytical.append(reduced_potential) - - # Compute analytical Delta_f_ij - nstates = len(f_i_analytical) - f_i_analytical = np.array(f_i_analytical) - u_i_analytical = np.array(u_i_analytical) - s_i_analytical = u_i_analytical - f_i_analytical - Delta_f_ij_analytical = np.zeros([nstates, nstates], np.float64) - Delta_u_ij_analytical = np.zeros([nstates, nstates], np.float64) - Delta_s_ij_analytical = np.zeros([nstates, nstates], np.float64) - for i in range(nstates): - for j in range(nstates): - Delta_f_ij_analytical[i, j] = f_i_analytical[j] - f_i_analytical[i] - Delta_u_ij_analytical[i, j] = u_i_analytical[j] - u_i_analytical[i] - Delta_s_ij_analytical[i, j] = s_i_analytical[j] - s_i_analytical[i] - - # Create and configure simulation object. - move = mmtools.mcmc.LangevinDynamicsMove(timestep=2.0*unit.femtoseconds, - collision_rate=20.0/unit.picosecond, - n_steps=500, reassign_velocities=True) - simulation = SAMSSampler(mcmc_moves=move, number_of_iterations=200) - - # Define file for temporary storage. - with mmtools.utils.temporary_directory() as tmp_dir: - storage = os.path.join(tmp_dir, 'test_storage.nc') - reporter = MultiStateReporter(storage, checkpoint_interval=1) - simulation.create(thermodynamic_states, sampler_states, reporter) - - # Run simulation we keep the debug info off during the simulation - # to not clog the output, and reactivate it for analysis. - simulation.run() - - # Create Analyzer. - analyzer = SAMSAnalyzer(reporter) - - # TODO: Check if deviations exceed tolerance. - Delta_f_ij, dDelta_f_ij = analyzer.get_free_energy() - error = np.abs(Delta_f_ij - Delta_f_ij_analytical) - indices = np.where(dDelta_f_ij > 0.0) - nsigma = np.zeros([nstates,nstates], np.float32) - nsigma[indices] = error[indices] / dDelta_f_ij[indices] - MAX_SIGMA = 6.0 # maximum allowed number of standard errors - if np.any(nsigma > MAX_SIGMA): - print("Delta_f_ij") - print(Delta_f_ij) - print("Delta_f_ij_analytical") - print(Delta_f_ij_analytical) - print("error") - print(error) - print("stderr") - print(dDelta_f_ij) - print("nsigma") - print(nsigma) - raise Exception("Dimensionless free energy difference exceeds MAX_SIGMA of %.1f" % MAX_SIGMA) - - Delta_u_ij, dDelta_u_ij = analyzer.get_enthalpy() - error = Delta_u_ij - Delta_u_ij_analytical - nsigma = np.zeros([nstates,nstates], np.float32) - nsigma[indices] = error[indices] / dDelta_f_ij[indices] - if np.any(nsigma > MAX_SIGMA): - print("Delta_u_ij") - print(Delta_u_ij) - print("Delta_u_ij_analytical") - print(Delta_u_ij_analytical) - print("error") - print(error) - print("nsigma") - print(nsigma) - raise Exception("Dimensionless potential energy difference exceeds MAX_SIGMA of %.1f" % MAX_SIGMA) + # ------------------------------------ + # VARIABLES TO SET FOR EACH TEST CLASS + # ------------------------------------ - # Clean up. - del simulation + N_SAMPLERS = 5 + N_STATES = 5 + SAMPLER = ReplicaExchangeSampler + ANALYZER = ReplicaExchangeAnalyzer - if verbose: - print("PASSED.") +class TestHarmonicOscillatorsSAMSSampler(TestHarmonicOscillatorsMultiStateSampler): + """Test SAMS sampler can compute free energies of harmonic oscillator""" + # ------------------------------------ + # VARIABLES TO SET FOR EACH TEST CLASS + # ------------------------------------ + + N_SAMPLERS = 1 + N_STATES = 5 + SAMPLER = SAMSSampler + ANALYZER = SAMSAnalyzer # ============================================================================== # TEST REPORTER