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dipole_results_goup.asv
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function dipole_results_goup(base_save_path, subs, params)
%UNTITLED3 Summary of this function goes here
% Detailed explanation goes here
n_subs = max(subs);
n_ph = length(params.phalange_labels);
dist_sqmag_opm = nan(n_subs,n_ph);
dist_sqgrad_opm = nan(n_subs,n_ph);
dist_sqmag_sqgrad = nan(n_subs,n_ph);
spread_opm = nan(n_subs,1);
spread_squidmag = nan(n_subs,1);
spread_squidgrad = nan(n_subs,1);
for i_sub = subs
params.sub = ['sub_' num2str(i_sub,'%02d')];
ft_hastoolbox('mne', 1);
save_path = fullfile(base_save_path,params.sub);
load(fullfile(save_path, 'dipoles'));
dipole_squidmag{i_sub} = squidmag_dipole;
dipole_squidgrad{i_sub} = squidgrad_dipole;
dipole_opm{i_sub} = opm_dipole;
% Metrics:
% - distance between dipoles for same phalange different systems
% - over phalanges: average distance from mean location within distance
pos_squidmag = zeros(n_ph,3);
pos_squidgrad = zeros(n_ph,3);
pos_opm = zeros(n_ph,3);
for i_phalange = 1:n_ph
pos_squidmag(i_phalange,:) = dipole_squidmag{i_sub}{i_phalange}.dip.pos;
pos_squidgrad(i_phalange,:) = dipole_squidgrad{i_sub}{i_phalange}.dip.pos;
pos_opm(i_phalange,:) = dipole_opm{i_sub}{i_phalange}.dip.pos;
dist_sqmag_opm(i_sub,i_phalange) = 1e1*norm(pos_squidmag(i_phalange,:)-pos_opm(i_phalange,:));
dist_sqgrad_opm(i_sub,i_phalange) = 1e1*norm(pos_squidgrad(i_phalange,:)-pos_opm(i_phalange,:));
dist_sqmag_sqgrad(i_sub,i_phalange) = 1e1*norm(pos_squidmag(i_phalange,:)-pos_squidgrad(i_phalange,:));
end
spread_opm(i_sub,:) = mean(1e1*vecnorm(pos_opm-repmat(mean(pos_opm,1),[n_ph 1]),2,2))'; % mean distance from center of phalanges
spread_squidmag(i_sub,:) = mean(1e1*vecnorm(pos_squidmag-repmat(mean(pos_squidmag,1),[n_ph 1]),2,2))'; % mean distance from center of phalanges
spread_squidgrad(i_sub,:) = mean(1e1*vecnorm(pos_squidgrad-repmat(mean(pos_squidgrad,1),[n_ph 1]),2,2))'; % mean distance from center of phalanges
end
%% Plot distances
h = figure('DefaultAxesFontSize',16);
bar(1:length(params.phalange_labels),mean(dist_sqmag_opm,1,'omitnan'));
hold on
er = errorbar(1:5,mean(dist_sqmag_opm,1,'omitnan'), mean(dist_sqmag_opm,1,'omitnan')-min(dist_sqmag_opm,[],1,'omitnan'), mean(dist_sqmag_opm,1,'omitnan')-max(dist_sqmag_opm,[],1,'omitnan'));
er.Color = [0 0 0];
er.LineStyle = 'none';
er.LineWidth = 1;
er.CapSize = 30;
hold off
title(['Dist SQUID-MAG to OPM (mean = ' num2str(mean(mean(dist_sqmag_opm,'omitnan'),'omitnan'),'%.1f') 'mm)'])
ylabel('Distance [mm]')
xlabel('Phalange')
xticklabels(params.phalange_labels)
saveas(h, fullfile(base_save_path, 'figs', 'dipole_squidmag_to_opm_dist.jpg'))
h = figure('DefaultAxesFontSize',16);
bar(1:length(params.phalange_labels),mean(dist_sqgrad_opm,1,'omitnan'));
hold on
er = errorbar(1:5,mean(dist_sqgrad_opm,1,'omitnan'), mean(dist_sqgrad_opm,1,'omitnan')-min(dist_sqgrad_opm,[],1,'omitnan'), mean(dist_sqgrad_opm,1,'omitnan')-max(dist_sqgrad_opm,[],1,'omitnan'));
er.Color = [0 0 0];
er.LineStyle = 'none';
er.LineWidth = 1;
er.CapSize = 30;
hold off
title(['Dist SQUID-GRAD to OPM (mean = ' num2str(mean(mean(dist_sqgrad_opm,'omitnan'),'omitnan'),'%.1f') 'mm)'])
ylabel('Distance [mm]')
xlabel('Phalange')
xticklabels(params.phalange_labels)
saveas(h, fullfile(base_save_path, 'figs', 'dipole_squidgrad_to_opm_dist.jpg'))
close
h = figure('DefaultAxesFontSize',16);
bar(1:length(params.phalange_labels),mean(dist_sqmag_sqgrad,1,'omitnan'));
hold on
er = errorbar(1:5,mean(dist_sqmag_sqgrad,1,'omitnan'), mean(dist_sqmag_sqgrad,1,'omitnan')-min(dist_sqmag_sqgrad,[],1,'omitnan'), mean(dist_sqmag_sqgrad,1,'omitnan')-max(dist_sqmag_sqgrad,[],1,'omitnan'));
er.Color = [0 0 0];
er.LineStyle = 'none';
er.LineWidth = 1;
er.CapSize = 30;
hold off
title(['Dist SQUID-MAG to SQUID-GRAD (mean = ' num2str(mean(mean(dist_sqmag_sqgrad,'omitnan'),'omitnan'),'%.1f') 'mm)'])
ylabel('Distance [mm]')
xlabel('Phalange')
xticklabels(params.phalange_labels)
saveas(h, fullfile(base_save_path, 'figs', 'dipole_squidmag_to_squidgrad_dist.jpg'))
close
%% Plot spread
% h = figure('DefaultAxesFontSize',16);
% bar(1,mean(spread_opm,1,'omitnan'));
% hold on
% er = errorbar(1:5,mean(spread_opm,1,'omitnan'), mean(spread_opm,1,'omitnan')-min(spread_opm,[],1,'omitnan'), mean(spread_opm,1,'omitnan')-max(spread_opm,[],1,'omitnan'));
% er.Color = [0 0 0];
% er.LineStyle = 'none';
% er.LineWidth = 1;
% er.CapSize = 30;
% hold off
% title(['OPM spread (mean = ' num2str(mean(mean(spread_opm,'omitnan'),'omitnan'),'%.1f') 'mm)'])
% ylabel('Dipoles spread [mm]')
% xlabel('Phalange')
% xticklabels(params.phalange_labels)
% saveas(h, fullfile(base_save_path, 'figs', 'dipole_opm_spread.jpg'))
%
% h = figure('DefaultAxesFontSize',16);
% bar(1:length(params.phalange_labels),mean(spread_squidmag,1,'omitnan'));
% hold on
% er = errorbar(1:5,mean(spread_squidmag,1,'omitnan'), mean(spread_squidmag,1,'omitnan')-min(spread_squidmag,[],1,'omitnan'), mean(spread_squidmag,1,'omitnan')-max(spread_squidmag,[],1,'omitnan'));
% er.Color = [0 0 0];
% er.LineStyle = 'none';
% er.LineWidth = 1;
% er.CapSize = 30;
% hold off
% title(['SQUID-MAG spread (mean = ' num2str(mean(mean(spread_squidmag,'omitnan'),'omitnan'),'%.1f') 'mm)'])
% ylabel('Dipoles spread [mm]')
% xlabel('Phalange')
% xticklabels(params.phalange_labels)
% saveas(h, fullfile(base_save_path, 'figs', 'dipole_squidmag_spread.jpg'))
% close
%
% h = figure('DefaultAxesFontSize',16);
% bar(1:length(params.phalange_labels),mean(spread_squidgrad,1,'omitnan'));
% hold on
% er = errorbar(1:5,mean(spread_squidgrad,1,'omitnan'), mean(spread_squidgrad,1,'omitnan')-min(spread_squidgrad,[],1,'omitnan'), mean(spread_squidgrad,1,'omitnan')-max(spread_squidgrad,[],1,'omitnan'));
% er.Color = [0 0 0];
% er.LineStyle = 'none';
% er.LineWidth = 1;
% er.CapSize = 30;
% hold off
% title(['SQUID-GRAD spread (mean = ' num2str(mean(mean(spread_squidgrad,'omitnan'),'omitnan'),'%.1f') 'mm)'])
% ylabel('Dipoles spread [mm]')
% xlabel('Phalange')
% xticklabels(params.phalange_labels)
% saveas(h, fullfile(base_save_path, 'figs', 'dipole_squidgrad_spread.jpg'))
% close
%
% h = figure('DefaultAxesFontSize',16);
% bar(1:length(params.phalange_labels),mean(spread_opmeeg,1,'omitnan'));
% hold on
% er = errorbar(1:5,mean(spread_opmeeg,1,'omitnan'), mean(spread_opmeeg,1,'omitnan')-min(spread_opmeeg,[],1,'omitnan'), mean(spread_opmeeg,1,'omitnan')-max(spread_opmeeg,[],1,'omitnan'));
% er.Color = [0 0 0];
% er.LineStyle = 'none';
% er.LineWidth = 1;
% er.CapSize = 30;
% hold off
% title(['OPM-EEG spread (mean = ' num2str(mean(mean(spread_opmeeg,'omitnan'),'omitnan'),'%.1f') 'mm)'])
% ylabel('Dipoles spread [mm]')
% xlabel('Phalange')
% xticklabels(params.phalange_labels)
% saveas(h, fullfile(base_save_path, 'figs', 'dipole_opmeeg_spread.jpg'))
% close
%
% h = figure('DefaultAxesFontSize',16);
% bar(1:length(params.phalange_labels),mean(spread_squideeg,1,'omitnan'));
% hold on
% er = errorbar(1:5,mean(spread_squideeg,1,'omitnan'), mean(spread_squideeg,1,'omitnan')-min(spread_squideeg,[],1,'omitnan'), mean(spread_squideeg,1,'omitnan')-max(spread_squideeg,[],1,'omitnan'));
% er.Color = [0 0 0];
% er.LineStyle = 'none';
% er.LineWidth = 1;
% er.CapSize = 30;
% hold off
% title(['SQUID-EEG spread (mean = ' num2str(mean(mean(spread_squideeg,'omitnan'),'omitnan'),'%.1f') 'mm)'])
% ylabel('Dipoles spread [mm]')
% xlabel('Phalange')
% xticklabels(params.phalange_labels)
% saveas(h, fullfile(base_save_path, 'figs', 'dipole_squideeg_spread.jpg'))
% close all
%% Plot spread squidmag vs opm
data1 = spread_squidmag;
data2 = spread_opm;
data3 = spread_squidgrad;
mean1 = mean(data1,1,'omitnan');
mean2 = mean(data2,1,'omitnan');
mean3 = mean(data3,1,'omitnan');
min1 = min(data1,[],1,'omitnan');
min2 = min(data2,[],1,'omitnan');
min3 = min(data3,[],1,'omitnan');
max1 = max(data1,[],1,'omitnan');
max2 = max(data2,[],1,'omitnan');
max3 = max(data3,[],1,'omitnan');
err1 = [mean1-min1; max1-mean1];
err2 = [mean2-min2; max2-mean2];
err3 = [mean3-min3; max3-mean3];
h = figure('DefaultAxesFontSize',16);
bar(1,[mean1; mean2; mean3]','grouped');
hold on
k=1;
errorbar(k-0.15,mean1(k),err1(1,k),err1(2,k),'k','linestyle','none');
errorbar(k+0.15,mean2(k),err2(1,k),err2(2,k),'k','linestyle','none');
errorbar(k+0.15,mean3(k),err3(1,k),err3(2,k),'k','linestyle','none');
[~, p_values] = ttest(data1(:, 1), data2(:, 1));
sigstar({[1, 1]}, p_values);
hold off
title('Group level M100 dipole spread')
ylabel('Dipoles spread [mm]')
%xlabel('Phalange')
legend({'squidmag','opm'});
xticklabels(params.phalange_labels)
saveas(h, fullfile(base_save_path, 'figs', 'dipole_spread_squidmag_opm.jpg'))
%% Plot spread squidgrad vs opm
data1 = spread_squidgrad;
data2 = spread_opm;
mean1 = mean(data1,1,'omitnan');
mean2 = mean(data2,1,'omitnan');
min1 = min(data1,[],1,'omitnan');
min2 = min(data2,[],1,'omitnan');
max1 = max(data1,[],1,'omitnan');
max2 = max(data2,[],1,'omitnan');
err1 = [mean1-min1; max1-mean1];
err2 = [mean2-min2; max2-mean2];
h = figure('DefaultAxesFontSize',16);
bar(1,[mean1; mean2]','grouped');
hold on
k=1;
errorbar(k-0.15,mean1(k),err1(1,k),err1(2,k),'k','linestyle','none');
errorbar(k+0.15,mean2(k),err2(1,k),err2(2,k),'k','linestyle','none');
[~, p_values] = ttest(data1(:, 1), data2(:, 1));
sigstar({[1, 1]}, p_values);
hold off
title('Group level M100 dipole spread')
ylabel('Dipoles spread [mm]')
%xlabel('Phalange')
legend({'squidgrad','opm'});
xticklabels(params.phalange_labels)
saveas(h, fullfile(base_save_path, 'figs', 'dipole_spread_squidgrad_opm.jpg'))
%% Plot spread squidgrad vs squidmag
data1 = spread_squidgrad;
data2 = spread_squidmag;
mean1 = mean(data1,1,'omitnan');
mean2 = mean(data2,1,'omitnan');
min1 = min(data1,[],1,'omitnan');
min2 = min(data2,[],1,'omitnan');
max1 = max(data1,[],1,'omitnan');
max2 = max(data2,[],1,'omitnan');
err1 = [mean1-min1; max1-mean1];
err2 = [mean2-min2; max2-mean2];
h = figure('DefaultAxesFontSize',16);
bar(1,[mean1; mean2]','grouped');
hold on
k=1;
errorbar(k-0.15,mean1(k),err1(1,k),err1(2,k),'k','linestyle','none');
errorbar(k+0.15,mean2(k),err2(1,k),err2(2,k),'k','linestyle','none');
[~, p_values] = ttest(data1(:, 1), data2(:, 1));
sigstar({[1, 1]}, p_values);
hold off
title('Group level M100 dipole spread')
ylabel('Dipoles spread [mm]')
%xlabel('Phalange')
legend({'squidgrad','squidmag'});
xticklabels(params.phalange_labels)
saveas(h, fullfile(base_save_path, 'figs', 'dipole_spread_squidgrad_squidmag.jpg'))
close all
end