JBrowse warning when re-running contig pipeline

[glebkuznetsov]

Not sure why this is happening.

[Errno 17] File exists: '/home/ubuntu/millstone/genome_designer/conf/../temp_data/projects/446830f9/ref_genomes/41532f34/jbrowse/tracks'
Skipping dir tracks because it already exists.

[dbgoodman]

compile_tracklist_json() in jbrowse_util.py is being run each time a
new contig gets a jbrowse track.

We should just remove the warning.

On Thu, Jun 23, 2016 at 5:19 PM Gleb Kuznetsov [email protected]
wrote:

Not sure why this is happening.

[Errno 17] File exists:
'/home/ubuntu/millstone/genome_designer/conf/../temp_data/projects/446830f9/ref_genomes/41532f34/jbrowse/tracks'
Skipping dir tracks because it already exists.

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[dbgoodman]

Something weirder might be going on though. I will investigate
compile_tracklist_json()
and figure it out.

On Thu, Jun 23, 2016 at 6:12 PM Daniel Bryan Goodman [email protected] wrote:

compile_tracklist_json() in jbrowse_util.py is being run each time a
new contig gets a jbrowse track.

We should just remove the warning.

On Thu, Jun 23, 2016 at 5:19 PM Gleb Kuznetsov [email protected]
wrote:

Not sure why this is happening.

[Errno 17] File exists:
'/home/ubuntu/millstone/genome_designer/conf/../temp_data/projects/446830f9/ref_genomes/41532f34/jbrowse/tracks'
Skipping dir tracks because it already exists.

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