new NCBI_SRAGenomeTrakr export

Author: cbarcl01

web/templates/wastewater/export.js

@@ -1,6 +1,6 @@
 // A dictionary of possible export formats
 export default {
-  NCBI_SRA: {
+  NCBI_SRAGenomeTrakr: {
     fileType: 'xlsx',
     status: 'published',
     method: function(dh) {
@@ -38,6 +38,53 @@ export default {
       const outputMatrix = [[...exportHeaders.keys()]];
       const sourceFields = dh.getFields(dh.table);
       const sourceFieldNameMap = dh.getFieldNameMap(sourceFields);
+      dh.getHeaderMap(exportHeaders, sourceFields, 'NCBI_SRAGenomeTrakr');
+      for (const inputRow of dh.getTrimmedData(dh.hot)) {
+        const outputRow = [];
+        let value;
+        for (const [headerName, sources] of exportHeaders) {
+          value = dh.getMappedField(
+              headerName,
+              inputRow,
+              sources,
+              sourceFields,
+              sourceFieldNameMap,
+              '; ',
+              'NCBI_SRAGenomeTrakr'
+            );
+          outputRow.push(value);
+        }
+        outputMatrix.push(outputRow);
+      }
+      return outputMatrix;
+    },
+  },
+  NCBI_SRA: {
+    fileType: 'xlsx',
+    status: 'published',
+    method: function(dh) {
+      const exportHeaders = new Map([
+        ["sample_name", []],
+        ["library_ID", []],
+        ["title", []],
+        ["library_strategy", []],
+        ["library_source", []],
+        ["library_selection", []],
+        ["library_layout", []],
+        ["platform", []],
+        ["instrument_model", []],
+        ["design_description", []],
+        ["filetype", []],
+        ["filename", []],
+        ["filename2", []],
+        ["filename3", []],
+        ["filename4", []],
+        ["assembly", []],
+        ["fasta_file", []],
+      ]);
+      const outputMatrix = [[...exportHeaders.keys()]];
+      const sourceFields = dh.getFields(dh.table);
+      const sourceFieldNameMap = dh.getFieldNameMap(sourceFields);
       dh.getHeaderMap(exportHeaders, sourceFields, 'NCBI_SRA');
       for (const inputRow of dh.getTrimmedData(dh.hot)) {
         const outputRow = [];