refactor: fastwalk in repoanalyzer, restructure cidverseutils

go.mod

@@ -1,15 +1,23 @@
 module github.com/cidverse/cid
 
-go 1.21
+go 1.22
+
+toolchain go1.22.2
 
 require (
 	github.com/ProtonMail/gopenpgp/v2 v2.7.5
 	github.com/bwmarrin/snowflake v0.3.0
-	github.com/cidverse/cidverseutils v0.0.0-20240302003507-f592801a7e1a
+	github.com/cidverse/cidverseutils/ci v0.0.0-20240422222733-849aa689d44c
+	github.com/cidverse/cidverseutils/compress v0.0.0-20240422221402-488260328200
+	github.com/cidverse/cidverseutils/containerruntime v0.0.0-20240422222733-849aa689d44c
+	github.com/cidverse/cidverseutils/filesystem v0.0.0-20240422222733-849aa689d44c
+	github.com/cidverse/cidverseutils/hash v0.0.0-20240421215032-ae9bd53b804a
+	github.com/cidverse/cidverseutils/network v0.0.0-20240422222733-849aa689d44c
+	github.com/cidverse/cidverseutils/version v0.0.0-20240422222733-849aa689d44c
 	github.com/cidverse/go-rules v0.0.0-20231112122021-075e5e6f8abc
-	github.com/cidverse/go-vcs v0.0.0-20240114124206-55cd79bb1b6b
+	github.com/cidverse/go-vcs v0.0.0-20240402102656-5c7ce4c133c6
 	github.com/cidverse/normalizeci v1.1.1-0.20240323134319-1eade1c37ec8
-	github.com/cidverse/repoanalyzer v0.0.0-20240321000658-40c90bfb500d
+	github.com/cidverse/repoanalyzer v0.0.0-20240421224756-d04af36a7d1e
 	github.com/go-resty/resty/v2 v2.12.0
 	github.com/google/uuid v1.6.0
 	github.com/hashicorp/go-version v1.6.0
@@ -22,7 +30,7 @@ require (
 	github.com/oriser/regroup v0.0.0-20230527212431-1b00c9bdbc5b
 	github.com/rs/zerolog v1.32.0
 	github.com/samber/lo v1.39.0
-	github.com/sethvargo/go-password v0.2.0
+	github.com/sethvargo/go-password v0.3.0
 	github.com/spf13/cobra v1.8.0
 	github.com/stretchr/testify v1.9.0
 	github.com/thoas/go-funk v0.9.3
@@ -34,24 +42,25 @@ require (
 	dario.cat/mergo v1.0.0 // indirect
 	github.com/BurntSushi/toml v1.3.2 // indirect
 	github.com/Masterminds/semver/v3 v3.2.1 // indirect
-	github.com/Microsoft/go-winio v0.6.1 // indirect
+	github.com/Microsoft/go-winio v0.6.2 // indirect
 	github.com/ProtonMail/go-crypto v1.0.0 // indirect
 	github.com/ProtonMail/go-mime v0.0.0-20230322103455-7d82a3887f2f // indirect
 	github.com/antlr4-go/antlr/v4 v4.13.0 // indirect
+	github.com/charlievieth/fastwalk v1.0.3 // indirect
+	github.com/cidverse/cidverseutils/exec v0.0.0-20240422222733-849aa689d44c // indirect
 	github.com/cloudflare/circl v1.3.7 // indirect
 	github.com/cyphar/filepath-securejoin v0.2.4 // indirect
 	github.com/davecgh/go-spew v1.1.1 // indirect
 	github.com/emirpasic/gods v1.18.1 // indirect
 	github.com/gabriel-vasile/mimetype v1.4.3 // indirect
 	github.com/go-git/gcfg v1.5.1-0.20230307220236-3a3c6141e376 // indirect
 	github.com/go-git/go-billy/v5 v5.5.0 // indirect
-	github.com/go-git/go-git/v5 v5.11.0 // indirect
+	github.com/go-git/go-git/v5 v5.12.0 // indirect
 	github.com/go-playground/locales v0.14.1 // indirect
 	github.com/go-playground/universal-translator v0.18.1 // indirect
 	github.com/go-playground/validator/v10 v10.19.0 // indirect
 	github.com/golang-jwt/jwt v3.2.2+incompatible // indirect
 	github.com/golang/groupcache v0.0.0-20210331224755-41bb18bfe9da // indirect
-	github.com/golang/protobuf v1.5.4 // indirect
 	github.com/google/cel-go v0.20.1 // indirect
 	github.com/google/go-github/v60 v60.0.0 // indirect
 	github.com/google/go-querystring v1.1.0 // indirect
@@ -66,35 +75,33 @@ require (
 	github.com/leodido/go-urn v1.4.0 // indirect
 	github.com/mattn/go-isatty v0.0.20 // indirect
 	github.com/opencontainers/go-digest v1.0.0 // indirect
-	github.com/pelletier/go-toml/v2 v2.2.0 // indirect
+	github.com/pelletier/go-toml/v2 v2.2.1 // indirect
 	github.com/pjbgf/sha1cd v0.3.0 // indirect
 	github.com/pkg/errors v0.9.1 // indirect
 	github.com/pmezard/go-difflib v1.0.0 // indirect
 	github.com/sabhiram/go-gitignore v0.0.0-20210923224102-525f6e181f06 // indirect
 	github.com/secure-systems-lab/go-securesystemslib v0.8.0 // indirect
-	github.com/sergi/go-diff v1.1.0 // indirect
+	github.com/sergi/go-diff v1.3.2-0.20230802210424-5b0b94c5c0d3 // indirect
 	github.com/shibumi/go-pathspec v1.3.0 // indirect
 	github.com/skeema/knownhosts v1.2.2 // indirect
 	github.com/spf13/pflag v1.0.5 // indirect
 	github.com/stoewer/go-strcase v1.3.0 // indirect
 	github.com/stretchr/objx v0.5.2 // indirect
 	github.com/valyala/bytebufferpool v1.0.0 // indirect
 	github.com/valyala/fasttemplate v1.2.2 // indirect
-	github.com/xanzy/go-gitlab v0.101.0 // indirect
+	github.com/xanzy/go-gitlab v0.103.0 // indirect
 	github.com/xanzy/ssh-agent v0.3.3 // indirect
 	golang.org/x/crypto v0.22.0 // indirect
-	golang.org/x/exp v0.0.0-20240318143956-a85f2c67cd81 // indirect
-	golang.org/x/mod v0.16.0 // indirect
+	golang.org/x/exp v0.0.0-20240416160154-fe59bbe5cc7f // indirect
+	golang.org/x/mod v0.17.0 // indirect
 	golang.org/x/net v0.24.0 // indirect
-	golang.org/x/oauth2 v0.18.0 // indirect
-	golang.org/x/sync v0.6.0 // indirect
+	golang.org/x/oauth2 v0.19.0 // indirect
+	golang.org/x/sync v0.7.0 // indirect
 	golang.org/x/sys v0.19.0 // indirect
 	golang.org/x/text v0.14.0 // indirect
 	golang.org/x/time v0.5.0 // indirect
-	golang.org/x/tools v0.19.0 // indirect
-	google.golang.org/appengine v1.6.8 // indirect
-	google.golang.org/genproto/googleapis/api v0.0.0-20240318140521-94a12d6c2237 // indirect
-	google.golang.org/genproto/googleapis/rpc v0.0.0-20240318140521-94a12d6c2237 // indirect
+	google.golang.org/genproto/googleapis/api v0.0.0-20240415180920-8c6c420018be // indirect
+	google.golang.org/genproto/googleapis/rpc v0.0.0-20240415180920-8c6c420018be // indirect
 	google.golang.org/protobuf v1.33.0 // indirect
 	gopkg.in/warnings.v0 v0.1.2 // indirect
 )