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software itself as well, with a citation similar to the following:: - Clawpack Development Team (2020), Clawpack Version 5.7.1, - http://www.clawpack.org, doi: 10.5281/zenodo.4025432 + Clawpack Development Team (2024), Clawpack Version 5.10.0, + http://www.clawpack.org, doi: 10.5281/zenodo.10896214 Here's the bibtex:: @@ -126,9 +126,9 @@ Here's the bibtex:: title={Clawpack software}, author={{Clawpack Development Team}}, url={http://www.clawpack.org}, - note={Version 5.7.1}, - doi={https://doi.org/10.5281/zenodo.4025432}, - year={2020}} + note={Version 5.10.0}, + doi={https://doi.org/10.5281/zenodo.10896214}, + year={2024}} Please fill in the version number that you used, and its year, with the appropriate DOI from `Zenodo `_, if available. diff --git a/_sources/changes_to_master.rst.txt b/_sources/changes_to_master.rst.txt index cfb3f90b3..6bec44867 100644 --- a/_sources/changes_to_master.rst.txt +++ b/_sources/changes_to_master.rst.txt @@ -3,12 +3,12 @@ .. _changes_to_master: =============================== -Changes to master since v5.9.2 +Changes to master since v5.10.0 =============================== Follow the links to see changes that have been made to the master branch of -each repository since the last release (v5.9.2) on November 4, 2023. +each repository since the last release (v5.10.0) on March 29, 2024. These changes should appear in the next release. If you need them now, see :ref:`developers` for instructions on cloning and installing from the @@ -31,48 +31,48 @@ Changes to classic See `classic diffs -`_ +`_ Changes to clawutil ------------------- See `clawutil diffs -`_ +`_ Changes to visclaw ------------------ See `visclaw diffs -`_ +`_ Changes to riemann ------------------ See `riemann diffs -`_ +`_ Changes to amrclaw ------------------ See `amrclaw diffs -`_ +`_ Changes to geoclaw ------------------ -See `geoclaw diffs `_ +See `geoclaw diffs `_ Changes to PyClaw ------------------ -See `pyclaw diffs `_ +See `pyclaw diffs `_ =========================== Other Clawpack Repositories @@ -82,10 +82,10 @@ The repositories below are not included in the Clawpack tarfile or pip install, but changes to these repositories may also be of interest. - `apps diffs - `_ + `_ - `doc diffs `_ - `docker-files diffs - `_ + `_ diff --git a/_sources/installing_fortcodes.rst.txt b/_sources/installing_fortcodes.rst.txt index 7f30a9c34..c52553afa 100644 --- a/_sources/installing_fortcodes.rst.txt +++ b/_sources/installing_fortcodes.rst.txt @@ -36,9 +36,9 @@ Download a tar file from one of these sources: After downloading a tar file you can do, e.g. :: - tar -xzf clawpack-v5.9.2.tar.gz - cd clawpack-v5.9.2 - export CLAW=/full/path/to/clawpack-v5.9.2 # in bash + tar -xzf clawpack-v5.10.0.tar.gz + cd clawpack-v5.10.0 + export CLAW=/full/path/to/clawpack-v5.10.0 # in bash The last command sets an environment variable when using the bash shell. The syntax may be different in other shells. Replace `/full/path/to` @@ -60,7 +60,7 @@ See :ref:`developers` for more details, but the basic commands are:: git clone https://github.com/clawpack/clawpack.git cd clawpack - git checkout v5.9.2 # or an older version; `git tag -l` to list options + git checkout v5.10.0 # or an older version; `git tag -l` to list options git submodule init # for repositories pyclaw, clawutil, visclaw, etc. git submodule update # clones all the submodule repositories export CLAW=/full/path/to/clawpack # in bash diff --git a/_sources/installing_pip.rst.txt b/_sources/installing_pip.rst.txt index c15ac6829..607c758d6 100644 --- a/_sources/installing_pip.rst.txt +++ b/_sources/installing_pip.rst.txt @@ -32,7 +32,7 @@ Clawpack is via:: or, more specifically, :: - pip install --user clawpack==v5.9.2 + pip install --user clawpack==v5.10.0 or you can choose a previous version from the `PyPi history `__. @@ -56,7 +56,7 @@ following command want to change anything in this command)**:: pip install --src=$HOME/clawpack_src --user --no-build-isolation -e \ - git+https://github.com/clawpack/clawpack.git@v5.9.2#egg=clawpack + git+https://github.com/clawpack/clawpack.git@v5.10.0#egg=clawpack **Notes:** @@ -71,7 +71,7 @@ want to change anything in this command)**:: :ref:`installing_options` if you want more control. - This will download Clawpack (via a git clone) into the directory - `$HOME/clawpack_src/clawpack-v5.9.2`. The top + `$HOME/clawpack_src/clawpack-v5.10.0`. The top installation directory can be changed by modifying the ``--src`` target (or omit this part to put it in your current working directory). If you have already downloaded Clawpack via a different mechanism then @@ -92,11 +92,11 @@ want to change anything in this command)**:: - In order to use the Fortran codes within Clawpack (`classic`, `amrclaw`, or `geoclaw`), you should then set the environment - variable `CLAW` to point to the `clawpack-v5.9.2` directory within + variable `CLAW` to point to the `clawpack-v5.10.0` directory within the installation directory `$HOME/clawpack_src`, and `FC` to point to the desired Fortran compiler, e.g. in the bash shell:: - export CLAW=$HOME/clawpack_src/clawpack-v5.9.2 + export CLAW=$HOME/clawpack_src/clawpack-v5.10.0 export FC=gfortran diff --git a/_sources/releases.rst.txt b/_sources/releases.rst.txt index 64df88ffd..8a0bf4e59 100644 --- a/_sources/releases.rst.txt +++ b/_sources/releases.rst.txt @@ -37,8 +37,8 @@ can also be referenced with the single DOI `10.17605/osf.io/kmw6h `__. See :ref:`citing` for more information on how best to cite Clawpack. -* :ref:`release_5_10_0` -- TBA - `[DOI 10.5281/zenodo.XX] `_ +* :ref:`release_5_10_0` -- March 29, 2024 + `[DOI 10.5281/zenodo.10896214] `_ * :ref:`release_5_9_2` -- November 4, 2023 `[DOI 10.5281/zenodo.10076317] `_ * :ref:`release_5_9_1` -- October 2, 2023 diff --git a/about.html b/about.html index bdb001939..fa44f69ba 100644 --- a/about.html +++ b/about.html @@ -174,8 +174,8 @@

License

Citing this work

If you use Clawpack in publications, please cite the software itself as well, with a citation similar to the following:

-
Clawpack Development Team (2020), Clawpack Version 5.7.1,
-http://www.clawpack.org, doi: 10.5281/zenodo.4025432
+
Clawpack Development Team (2024), Clawpack Version 5.10.0,
+http://www.clawpack.org, doi: 10.5281/zenodo.10896214
 

 

 
Here’s the bibtex:

@@ -183,9 +183,9 @@ 
Licensetitle={Clawpack software},
     author={{Clawpack Development Team}},
     url={http://www.clawpack.org},
-    note={Version 5.7.1},
-    doi={https://doi.org/10.5281/zenodo.4025432},
-    year={2020}}
+    note={Version 5.10.0},
+    doi={https://doi.org/10.5281/zenodo.10896214},
+    year={2024}}

Please fill in the version number that you used, and its year, with the diff --git a/changes_to_master.html b/changes_to_master.html index a3626b71c..a0f038405 100644 --- a/changes_to_master.html +++ b/changes_to_master.html @@ -6,7 +6,7 @@ - Changes to master since v5.9.2 — Clawpack 5.10.x documentation + Changes to master since v5.10.0 — Clawpack 5.10.x documentation @@ -67,7 +67,7 @@

Navigation

modules |
  • Clawpack 5.10.x documentation »
    • -
  • Changes to master since v5.9.2
    • +
  • Changes to master since v5.10.0
    • @@ -76,10 +76,10 @@

    Navigation

    -
    -

    Changes to master since v5.9.2

    +
    +

    Changes to master since v5.10.0

    Follow the links to see changes that have been made to the master branch of -each repository since the last release (v5.9.2) on November 4, 2023.

    +each repository since the last release (v5.10.0) on March 29, 2024.

    These changes should appear in the next release. If you need them now, see Developers’ Guide for instructions on cloning and installing from the master branch.

    @@ -94,31 +94,31 @@

    General changes

    Changes to classic

    -

    See classic diffs

    +

    See classic diffs

    Changes to clawutil

    -

    See clawutil diffs

    +

    See clawutil diffs

    Changes to visclaw

    -

    See visclaw diffs

    +

    See visclaw diffs

    Changes to riemann

    -

    See riemann diffs

    +

    See riemann diffs

    Changes to amrclaw

    -

    See amrclaw diffs

    +

    See amrclaw diffs

    Changes to geoclaw

    -

    See geoclaw diffs

    +

    See geoclaw diffs

    Changes to PyClaw

    -

    See pyclaw diffs

    +

    See pyclaw diffs

    @@ -126,9 +126,9 @@

    Other Clawpack Repositories -

  • apps diffs

    • +

  • apps diffs

  • doc diffs

    • -

  • docker-files diffs

    • +

  • docker-files diffs

    • @@ -147,7 +147,7 @@

    Version 5.10.x

    Table of Contents

      -
    • Changes to master since v5.9.2
        +
      • Changes to master since v5.10.0
        • Changes that are not backward compatible
        • General changes
        • Changes to classic
          • diff --git a/dev/.buildinfo b/dev/.buildinfo index 95242fa76..568834a42 100644 --- a/dev/.buildinfo +++ b/dev/.buildinfo @@ -1,4 +1,4 @@ # Sphinx build info version 1 # This file hashes the configuration used when building these files. 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          Navigation

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          • -
        • Clawpack 5.10.x documentation »
          • +
        • Clawpack dev documentation »
        • Plotting with Visclaw »
        • Using setplot.py to specify the desired plots »
        • ClawPlotAxes
          • @@ -420,7 +420,7 @@

          Methods -

          Version 5.10.x

          +

          Version dev

          Table of Contents

          diff --git a/dev/ClawPlotData.html b/dev/ClawPlotData.html index 15f157f23..54a934575 100644 --- a/dev/ClawPlotData.html +++ b/dev/ClawPlotData.html @@ -6,7 +6,7 @@ - ClawPlotData — Clawpack 5.10.x documentation + ClawPlotData — Clawpack dev documentation @@ -74,7 +74,7 @@

          Navigation

        • previous |
          • -
        • Clawpack 5.10.x documentation »
          • +
        • Clawpack dev documentation »
        • Plotting with Visclaw »
        • Using setplot.py to specify the desired plots »
        • ClawPlotData
          • @@ -335,7 +335,7 @@

          Methods -

          Version 5.10.x

          +

          Version dev

          Table of Contents

          diff --git a/dev/ClawPlotFigure.html b/dev/ClawPlotFigure.html index a040eadac..86d955d15 100644 --- a/dev/ClawPlotFigure.html +++ b/dev/ClawPlotFigure.html @@ -6,7 +6,7 @@ - ClawPlotFigure — Clawpack 5.10.x documentation + ClawPlotFigure — Clawpack dev documentation @@ -74,7 +74,7 @@

          Navigation

        • previous |
          • -
        • Clawpack 5.10.x documentation »
          • +
        • Clawpack dev documentation »
        • Plotting with Visclaw »
        • Using setplot.py to specify the desired plots »
        • ClawPlotFigure
          • @@ -185,7 +185,7 @@

          Methods -

          Version 5.10.x

          +

          Version dev

          Table of Contents

          diff --git a/dev/ClawPlotItem.html b/dev/ClawPlotItem.html index 9ded62704..7f71f4765 100644 --- a/dev/ClawPlotItem.html +++ b/dev/ClawPlotItem.html @@ -6,7 +6,7 @@ - ClawPlotItem — Clawpack 5.10.x documentation + ClawPlotItem — Clawpack dev documentation @@ -74,7 +74,7 @@

          Navigation

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        • Plotting with Visclaw »
        • Using setplot.py to specify the desired plots »
        • ClawPlotItem
          • @@ -577,7 +577,7 @@

          Methods -

          Version 5.10.x

          +

          Version dev

          Table of Contents

          diff --git a/dev/_sources/about.rst.txt b/dev/_sources/about.rst.txt index ecaf8a148..2b99d1464 100644 --- a/dev/_sources/about.rst.txt +++ b/dev/_sources/about.rst.txt @@ -117,8 +117,8 @@ Citing this work If you use Clawpack in publications, please cite the software itself as well, with a citation similar to the following:: - Clawpack Development Team (2020), Clawpack Version 5.7.1, - http://www.clawpack.org, doi: 10.5281/zenodo.4025432 + Clawpack Development Team (2024), Clawpack Version 5.10.0, + http://www.clawpack.org, doi: 10.5281/zenodo.10896214 Here's the bibtex:: @@ -126,9 +126,9 @@ Here's the bibtex:: title={Clawpack software}, author={{Clawpack Development Team}}, url={http://www.clawpack.org}, - note={Version 5.7.1}, - doi={https://doi.org/10.5281/zenodo.4025432}, - year={2020}} + note={Version 5.10.0}, + doi={https://doi.org/10.5281/zenodo.10896214}, + year={2024}} Please fill in the version number that you used, and its year, with the appropriate DOI from `Zenodo `_, if available. diff --git a/dev/_sources/changes_to_master.rst.txt b/dev/_sources/changes_to_master.rst.txt index cfb3f90b3..6bec44867 100644 --- a/dev/_sources/changes_to_master.rst.txt +++ b/dev/_sources/changes_to_master.rst.txt @@ -3,12 +3,12 @@ .. _changes_to_master: =============================== -Changes to master since v5.9.2 +Changes to master since v5.10.0 =============================== Follow the links to see changes that have been made to the master branch of -each repository since the last release (v5.9.2) on November 4, 2023. +each repository since the last release (v5.10.0) on March 29, 2024. These changes should appear in the next release. If you need them now, see :ref:`developers` for instructions on cloning and installing from the @@ -31,48 +31,48 @@ Changes to classic See `classic diffs -`_ +`_ Changes to clawutil ------------------- See `clawutil diffs -`_ +`_ Changes to visclaw ------------------ See `visclaw diffs -`_ +`_ Changes to riemann ------------------ See `riemann diffs -`_ +`_ Changes to amrclaw ------------------ See `amrclaw diffs -`_ +`_ Changes to geoclaw ------------------ -See `geoclaw diffs `_ +See `geoclaw diffs `_ Changes to PyClaw ------------------ -See `pyclaw diffs `_ +See `pyclaw diffs `_ =========================== Other Clawpack Repositories @@ -82,10 +82,10 @@ The repositories below are not included in the Clawpack tarfile or pip install, but changes to these repositories may also be of interest. - `apps diffs - `_ + `_ - `doc diffs `_ - `docker-files diffs - `_ + `_ diff --git a/dev/_sources/installing_fortcodes.rst.txt b/dev/_sources/installing_fortcodes.rst.txt index 7f30a9c34..c52553afa 100644 --- a/dev/_sources/installing_fortcodes.rst.txt +++ b/dev/_sources/installing_fortcodes.rst.txt @@ -36,9 +36,9 @@ Download a tar file from one of these sources: After downloading a tar file you can do, e.g. :: - tar -xzf clawpack-v5.9.2.tar.gz - cd clawpack-v5.9.2 - export CLAW=/full/path/to/clawpack-v5.9.2 # in bash + tar -xzf clawpack-v5.10.0.tar.gz + cd clawpack-v5.10.0 + export CLAW=/full/path/to/clawpack-v5.10.0 # in bash The last command sets an environment variable when using the bash shell. The syntax may be different in other shells. Replace `/full/path/to` @@ -60,7 +60,7 @@ See :ref:`developers` for more details, but the basic commands are:: git clone https://github.com/clawpack/clawpack.git cd clawpack - git checkout v5.9.2 # or an older version; `git tag -l` to list options + git checkout v5.10.0 # or an older version; `git tag -l` to list options git submodule init # for repositories pyclaw, clawutil, visclaw, etc. git submodule update # clones all the submodule repositories export CLAW=/full/path/to/clawpack # in bash diff --git a/dev/_sources/installing_pip.rst.txt b/dev/_sources/installing_pip.rst.txt index c15ac6829..607c758d6 100644 --- a/dev/_sources/installing_pip.rst.txt +++ b/dev/_sources/installing_pip.rst.txt @@ -32,7 +32,7 @@ Clawpack is via:: or, more specifically, :: - pip install --user clawpack==v5.9.2 + pip install --user clawpack==v5.10.0 or you can choose a previous version from the `PyPi history `__. @@ -56,7 +56,7 @@ following command want to change anything in this command)**:: pip install --src=$HOME/clawpack_src --user --no-build-isolation -e \ - git+https://github.com/clawpack/clawpack.git@v5.9.2#egg=clawpack + git+https://github.com/clawpack/clawpack.git@v5.10.0#egg=clawpack **Notes:** @@ -71,7 +71,7 @@ want to change anything in this command)**:: :ref:`installing_options` if you want more control. - This will download Clawpack (via a git clone) into the directory - `$HOME/clawpack_src/clawpack-v5.9.2`. The top + `$HOME/clawpack_src/clawpack-v5.10.0`. The top installation directory can be changed by modifying the ``--src`` target (or omit this part to put it in your current working directory). If you have already downloaded Clawpack via a different mechanism then @@ -92,11 +92,11 @@ want to change anything in this command)**:: - In order to use the Fortran codes within Clawpack (`classic`, `amrclaw`, or `geoclaw`), you should then set the environment - variable `CLAW` to point to the `clawpack-v5.9.2` directory within + variable `CLAW` to point to the `clawpack-v5.10.0` directory within the installation directory `$HOME/clawpack_src`, and `FC` to point to the desired Fortran compiler, e.g. in the bash shell:: - export CLAW=$HOME/clawpack_src/clawpack-v5.9.2 + export CLAW=$HOME/clawpack_src/clawpack-v5.10.0 export FC=gfortran diff --git a/dev/_sources/releases.rst.txt b/dev/_sources/releases.rst.txt index 64df88ffd..8a0bf4e59 100644 --- a/dev/_sources/releases.rst.txt +++ b/dev/_sources/releases.rst.txt @@ -37,8 +37,8 @@ can also be referenced with the single DOI `10.17605/osf.io/kmw6h `__. See :ref:`citing` for more information on how best to cite Clawpack. -* :ref:`release_5_10_0` -- TBA - `[DOI 10.5281/zenodo.XX] `_ +* :ref:`release_5_10_0` -- March 29, 2024 + `[DOI 10.5281/zenodo.10896214] `_ * :ref:`release_5_9_2` -- November 4, 2023 `[DOI 10.5281/zenodo.10076317] `_ * :ref:`release_5_9_1` -- October 2, 2023 diff --git a/dev/_static/documentation_options.js b/dev/_static/documentation_options.js index 7da634ac5..5eb79b07d 100644 --- a/dev/_static/documentation_options.js +++ b/dev/_static/documentation_options.js @@ -1,6 +1,6 @@ var DOCUMENTATION_OPTIONS = { URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'), - VERSION: '5.10.x', + VERSION: 'dev', LANGUAGE: 'en', COLLAPSE_INDEX: false, BUILDER: 'html', diff --git a/dev/about.html b/dev/about.html index 58391fb62..b5abba921 100644 --- a/dev/about.html +++ b/dev/about.html @@ -6,7 +6,7 @@ - About this software — Clawpack 5.10.x documentation + About this software — Clawpack dev documentation @@ -74,7 +74,7 @@

          Navigation

        • previous |
          • -
        • Clawpack 5.10.x documentation »
          • +
        • Clawpack dev documentation »
        • About this software
    @@ -174,8 +174,8 @@

    License

    Citing this work

    If you use Clawpack in publications, please cite the software itself as well, with a citation similar to the following:

    -
    Clawpack Development Team (2020), Clawpack Version 5.7.1,
-http://www.clawpack.org, doi: 10.5281/zenodo.4025432
+
    Clawpack Development Team (2024), Clawpack Version 5.10.0,
+http://www.clawpack.org, doi: 10.5281/zenodo.10896214
 
    
 
    
 
    Here’s the bibtex:
    
@@ -183,9 +183,9 @@ 
    Licensetitle={Clawpack software},
     author={{Clawpack Development Team}},
     url={http://www.clawpack.org},
-    note={Version 5.7.1},
-    doi={https://doi.org/10.5281/zenodo.4025432},
-    year={2020}}
+    note={Version 5.10.0},
+    doi={https://doi.org/10.5281/zenodo.10896214},
+    year={2024}}

    Please fill in the version number that you used, and its year, with the @@ -270,7 +270,7 @@

    License -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/adjoint.html b/dev/adjoint.html index 68f43f473..3ed144776 100644 --- a/dev/adjoint.html +++ b/dev/adjoint.html @@ -6,7 +6,7 @@ - Guiding AMR with adjoint flagging — Clawpack 5.10.x documentation + Guiding AMR with adjoint flagging — Clawpack dev documentation @@ -75,7 +75,7 @@

    Navigation

  • previous |
    • -
  • Clawpack 5.10.x documentation »
    • +
  • Clawpack dev documentation »
  • AMRClaw Description and Detailed Contents »
  • Guiding AMR with adjoint flagging
    • @@ -265,7 +265,7 @@

    Navigation

    -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/amr_algorithm.html b/dev/amr_algorithm.html index 57b5a36eb..e9d83c3d4 100644 --- a/dev/amr_algorithm.html +++ b/dev/amr_algorithm.html @@ -6,7 +6,7 @@ - Adaptive mesh refinement (AMR) algorithms — Clawpack 5.10.x documentation + Adaptive mesh refinement (AMR) algorithms — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

  • previous |
    • -
  • Clawpack 5.10.x documentation »
    • +
  • Clawpack dev documentation »
  • AMRClaw Description and Detailed Contents »
  • Adaptive mesh refinement (AMR) algorithms
    • @@ -247,7 +247,7 @@

    For more details -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/amrclaw.html b/dev/amrclaw.html index 79331240e..cc5038948 100644 --- a/dev/amrclaw.html +++ b/dev/amrclaw.html @@ -6,7 +6,7 @@ - AMRClaw Description and Detailed Contents — Clawpack 5.10.x documentation + AMRClaw Description and Detailed Contents — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

  • previous |
    • -
  • Clawpack 5.10.x documentation »
    • +
  • Clawpack dev documentation »
  • AMRClaw Description and Detailed Contents
    • @@ -194,7 +194,7 @@

    Navigation

    -

    Version 5.10.x

    +

    Version dev

    Related Topics

    @@ -107,7 +107,7 @@

    Navigation

    -

    Version 5.10.x

    +

    Version dev

    Related Topics

    @@ -125,7 +125,7 @@

    Navigation

    -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/apps.html b/dev/apps.html index 0225495e4..03dae124d 100644 --- a/dev/apps.html +++ b/dev/apps.html @@ -6,7 +6,7 @@ - Clawpack Applications repository — Clawpack 5.10.x documentation + Clawpack Applications repository — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

  • previous |
    • -
  • Clawpack 5.10.x documentation »
    • +
  • Clawpack dev documentation »
  • Clawpack Applications repository
    • @@ -164,7 +164,7 @@

    Examples included with Clawpack -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/aws.html b/dev/aws.html index d211d105b..6def03008 100644 --- a/dev/aws.html +++ b/dev/aws.html @@ -6,7 +6,7 @@ - Amazon Web Services EC2 Clawpack AMI — Clawpack 5.10.x documentation + Amazon Web Services EC2 Clawpack AMI — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

  • previous |
    • -
  • Clawpack 5.10.x documentation »
    • +
  • Clawpack dev documentation »
  • Amazon Web Services EC2 Clawpack AMI
    • @@ -322,7 +322,7 @@

    Creating your own AMI -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/b4run.html b/dev/b4run.html index 6e9e0d9d3..ff4bae2fc 100644 --- a/dev/b4run.html +++ b/dev/b4run.html @@ -6,7 +6,7 @@ - b4run function — Clawpack 5.10.x documentation + b4run function — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

  • previous |
    • -
  • Clawpack 5.10.x documentation »
    • +
  • Clawpack dev documentation »
  • b4run function
    • @@ -125,7 +125,7 @@

    Navigation

    -

    Version 5.10.x

    +

    Version dev

    Related Topics

    @@ -112,7 +112,7 @@

    Navigation

    -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/bc.html b/dev/bc.html index 16ed75fec..b92a669e4 100644 --- a/dev/bc.html +++ b/dev/bc.html @@ -6,7 +6,7 @@ - Boundary conditions — Clawpack 5.10.x documentation + Boundary conditions — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

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    • -
  • Clawpack 5.10.x documentation »
    • +
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  • Boundary conditions
    • @@ -229,7 +229,7 @@

    Navigation

    -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/biblio.html b/dev/biblio.html index 4f2bba8b6..600239ab7 100644 --- a/dev/biblio.html +++ b/dev/biblio.html @@ -6,7 +6,7 @@ - Bibliography — Clawpack 5.10.x documentation + Bibliography — Clawpack dev documentation @@ -70,7 +70,7 @@

    Navigation

  • previous |
    • -
  • Clawpack 5.10.x documentation »
    • +
  • Clawpack dev documentation »
  • Bibliography
    • @@ -425,7 +425,7 @@

    Other references -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/bouss1d.html b/dev/bouss1d.html index afa134a03..26c053312 100644 --- a/dev/bouss1d.html +++ b/dev/bouss1d.html @@ -6,7 +6,7 @@ - Boussinesq solvers in One Space Dimension — Clawpack 5.10.x documentation + Boussinesq solvers in One Space Dimension — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

  • previous |
    • -
  • Clawpack 5.10.x documentation »
    • +
  • Clawpack dev documentation »
  • GeoClaw Description and Detailed Contents »
  • Boussinesq solvers in One Space Dimension
    • @@ -196,7 +196,7 @@

    Navigation

    -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/bouss2d.html b/dev/bouss2d.html index 0e8faff09..c4b0f6894 100644 --- a/dev/bouss2d.html +++ b/dev/bouss2d.html @@ -6,7 +6,7 @@ - Boussinesq solvers in Two Space Dimensions — Clawpack 5.10.x documentation + Boussinesq solvers in Two Space Dimensions — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

  • previous |
    • -
  • Clawpack 5.10.x documentation »
    • +
  • Clawpack dev documentation »
  • GeoClaw Description and Detailed Contents »
  • Boussinesq solvers in Two Space Dimensions
    • @@ -353,7 +353,7 @@

    Examples -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/changes_to_master.html b/dev/changes_to_master.html index 97e78e85d..16c182f19 100644 --- a/dev/changes_to_master.html +++ b/dev/changes_to_master.html @@ -6,7 +6,7 @@ - Changes to master since v5.9.2 — Clawpack 5.10.x documentation + Changes to master since v5.10.0 — Clawpack dev documentation @@ -66,8 +66,8 @@

    Navigation

  • modules |
    • -
  • Clawpack 5.10.x documentation »
    • -
  • Changes to master since v5.9.2
    • +
  • Clawpack dev documentation »
    • +
  • Changes to master since v5.10.0
    • @@ -76,10 +76,10 @@

    Navigation

    -
    -

    Changes to master since v5.9.2

    +
    +

    Changes to master since v5.10.0

    Follow the links to see changes that have been made to the master branch of -each repository since the last release (v5.9.2) on November 4, 2023.

    +each repository since the last release (v5.10.0) on March 29, 2024.

    These changes should appear in the next release. If you need them now, see Developers’ Guide for instructions on cloning and installing from the master branch.

    @@ -94,31 +94,31 @@

    General changes

    Changes to classic

    -

    See classic diffs

    +

    See classic diffs

    Changes to clawutil

    -

    See clawutil diffs

    +

    See clawutil diffs

    Changes to visclaw

    -

    See visclaw diffs

    +

    See visclaw diffs

    Changes to riemann

    -

    See riemann diffs

    +

    See riemann diffs

    Changes to amrclaw

    -

    See amrclaw diffs

    +

    See amrclaw diffs

    Changes to geoclaw

    -

    See geoclaw diffs

    +

    See geoclaw diffs

    Changes to PyClaw

    -

    See pyclaw diffs

    +

    See pyclaw diffs

    @@ -126,9 +126,9 @@

    Other Clawpack Repositories -

  • apps diffs

    • +

  • apps diffs

  • doc diffs

    • -

  • docker-files diffs

    • +

  • docker-files diffs

    • @@ -142,12 +142,12 @@

    Other Clawpack Repositories -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    @@ -118,7 +118,7 @@

    Navigation

    -

    Version 5.10.x

    +

    Version dev

    Related Topics

    @@ -151,7 +151,7 @@

    Python conversion tool -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/claw4x.html b/dev/claw4x.html index bcee0e3e6..ea2f06139 100644 --- a/dev/claw4x.html +++ b/dev/claw4x.html @@ -6,7 +6,7 @@ - Clawpack 4.x links — Clawpack 5.10.x documentation + Clawpack 4.x links — Clawpack dev documentation @@ -66,7 +66,7 @@

    Navigation

  • modules |
    • -
  • Clawpack 5.10.x documentation »
    • +
  • Clawpack dev documentation »
  • Clawpack 4.x links
    • @@ -94,7 +94,7 @@

    Navigation

    -

    Version 5.10.x

    +

    Version dev

    Related Topics

    @@ -294,7 +294,7 @@

    Changes to plotting routines -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/clawpack_components.html b/dev/clawpack_components.html index 6e0a41294..3836b89d0 100644 --- a/dev/clawpack_components.html +++ b/dev/clawpack_components.html @@ -6,7 +6,7 @@ - Clawpack components — Clawpack 5.10.x documentation + Clawpack components — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

  • previous |
    • -
  • Clawpack 5.10.x documentation »
    • +
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  • Clawpack components
    • @@ -133,7 +133,7 @@

    Navigation

    -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/community.html b/dev/community.html index fc0c41475..74dd85cdc 100644 --- a/dev/community.html +++ b/dev/community.html @@ -6,7 +6,7 @@ - Clawpack Community — Clawpack 5.10.x documentation + Clawpack Community — Clawpack dev documentation @@ -75,7 +75,7 @@

    Navigation

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    • -
  • Clawpack 5.10.x documentation »
    • +
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  • Clawpack Community
    • @@ -223,7 +223,7 @@

    Other Clawpack events -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/contents.html b/dev/contents.html index a8687e61f..4b5fb57e4 100644 --- a/dev/contents.html +++ b/dev/contents.html @@ -6,7 +6,7 @@ - Full Table of Contents — Clawpack 5.10.x documentation + Full Table of Contents — Clawpack dev documentation @@ -70,7 +70,7 @@

    Navigation

  • next |
    • -
  • Clawpack 5.10.x documentation »
    • +
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  • Full Table of Contents
    • @@ -391,7 +391,7 @@

    References -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/contribute_apps.html b/dev/contribute_apps.html index b0ef55d09..380e7aa13 100644 --- a/dev/contribute_apps.html +++ b/dev/contribute_apps.html @@ -6,7 +6,7 @@ - Contributing examples and applications — Clawpack 5.10.x documentation + Contributing examples and applications — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

  • previous |
    • -
  • Clawpack 5.10.x documentation »
    • +
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  • Contributing examples and applications
    • @@ -107,7 +107,7 @@

    Navigation

    -

    Version 5.10.x

    +

    Version dev

    Related Topics

    @@ -494,7 +494,7 @@

    Trouble-Shooting Tip

    -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/docker_image.html b/dev/docker_image.html index a80628cf3..81908b478 100644 --- a/dev/docker_image.html +++ b/dev/docker_image.html @@ -6,7 +6,7 @@ - Docker for Clawpack — Clawpack 5.10.x documentation + Docker for Clawpack — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

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    • -
  • Clawpack 5.10.x documentation »
    • +
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  • Docker for Clawpack
    • @@ -247,7 +247,7 @@

    Dockerfiles for binder -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/dtopotools_module.html b/dev/dtopotools_module.html index c510cedbb..97adca3f8 100644 --- a/dev/dtopotools_module.html +++ b/dev/dtopotools_module.html @@ -6,7 +6,7 @@ - dtopotools module for moving topography — Clawpack 5.10.x documentation + dtopotools module for moving topography — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

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    • -
  • Clawpack 5.10.x documentation »
    • +
  • Clawpack dev documentation »
  • GeoClaw Description and Detailed Contents »
  • Python tools for working with topo and dtopo »
  • dtopotools module for moving topography
    • @@ -974,7 +974,7 @@

    Navigation

    -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/f77_vs_f90.html b/dev/f77_vs_f90.html index b9247e7f5..e01ee95b2 100644 --- a/dev/f77_vs_f90.html +++ b/dev/f77_vs_f90.html @@ -6,7 +6,7 @@ - Fortran 77 vs. Fortran 90 files — Clawpack 5.10.x documentation + Fortran 77 vs. Fortran 90 files — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

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    • -
  • Clawpack 5.10.x documentation »
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    • @@ -103,7 +103,7 @@

    Navigation

    -

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    +

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    Related Topics

    @@ -198,7 +198,7 @@

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    Version 5.10.x

    +

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    Table of Contents

    diff --git a/dev/fgout.html b/dev/fgout.html index 96f0afcbe..d03613877 100644 --- a/dev/fgout.html +++ b/dev/fgout.html @@ -6,7 +6,7 @@ - Fixed grid output (fgout) — Clawpack 5.10.x documentation + Fixed grid output (fgout) — Clawpack dev documentation @@ -74,7 +74,7 @@

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    • -
  • Clawpack 5.10.x documentation »
    • +
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  • Fixed grid output (fgout)
    • @@ -344,7 +344,7 @@

    A simple example -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/fgout_tools_module.html b/dev/fgout_tools_module.html index c720c61c9..b10f0993b 100644 --- a/dev/fgout_tools_module.html +++ b/dev/fgout_tools_module.html @@ -6,7 +6,7 @@ - fgout_tools module for working with fgout grids — Clawpack 5.10.x documentation + fgout_tools module for working with fgout grids — Clawpack dev documentation @@ -66,7 +66,7 @@

    Navigation

  • modules |
    • -
  • Clawpack 5.10.x documentation »
    • +
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  • fgout_tools module for working with fgout grids
    • @@ -388,7 +388,7 @@

    Navigation

    -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/first_run.html b/dev/first_run.html index 96aa72e15..aaf8751a4 100644 --- a/dev/first_run.html +++ b/dev/first_run.html @@ -6,7 +6,7 @@ - Running an example — Clawpack 5.10.x documentation + Running an example — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

  • previous |
    • -
  • Clawpack 5.10.x documentation »
    • +
  • Clawpack dev documentation »
  • Running an example
    • @@ -186,7 +186,7 @@

    Classic -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/first_run_fortran.html b/dev/first_run_fortran.html index 720b7ab99..1a2fd4e7b 100644 --- a/dev/first_run_fortran.html +++ b/dev/first_run_fortran.html @@ -6,7 +6,7 @@ - Testing your Fortran installation and running an example — Clawpack 5.10.x documentation + Testing your Fortran installation and running an example — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

  • previous |
    • -
  • Clawpack 5.10.x documentation »
    • +
  • Clawpack dev documentation »
  • Testing your Fortran installation and running an example
    • @@ -214,7 +214,7 @@

    More examples -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/first_run_pyclaw.html b/dev/first_run_pyclaw.html index d1c966ddf..c847693f6 100644 --- a/dev/first_run_pyclaw.html +++ b/dev/first_run_pyclaw.html @@ -6,7 +6,7 @@ - Testing a PyClaw installation and running an example — Clawpack 5.10.x documentation + Testing a PyClaw installation and running an example — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

  • previous |
    • -
  • Clawpack 5.10.x documentation »
    • +
  • Clawpack dev documentation »
  • PyClaw »
  • Testing a PyClaw installation and running an example
    • @@ -141,7 +141,7 @@

    From the command line -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/flagregions.html b/dev/flagregions.html index deb9f9ab1..fbb18e880 100644 --- a/dev/flagregions.html +++ b/dev/flagregions.html @@ -6,7 +6,7 @@ - Specifying flagregions for adaptive refinement — Clawpack 5.10.x documentation + Specifying flagregions for adaptive refinement — Clawpack dev documentation @@ -75,7 +75,7 @@

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  • previous |
    • -
  • Clawpack 5.10.x documentation »
    • +
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  • AMRClaw Description and Detailed Contents »
  • Specifying flagregions for adaptive refinement
    • @@ -184,7 +184,7 @@

    Navigation

    -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/force_dry.html b/dev/force_dry.html index 17f0b1cdd..a111864f4 100644 --- a/dev/force_dry.html +++ b/dev/force_dry.html @@ -6,7 +6,7 @@ - Force Cells to be Dry Initially — Clawpack 5.10.x documentation + Force Cells to be Dry Initially — Clawpack dev documentation @@ -74,7 +74,7 @@

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  • previous |
    • -
  • Clawpack 5.10.x documentation »
    • +
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  • GeoClaw Description and Detailed Contents »
  • Force Cells to be Dry Initially
    • @@ -407,7 +407,7 @@

    Internal GeoClaw modifications -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/fortran.html b/dev/fortran.html index 4445ec86b..a902f16b6 100644 --- a/dev/fortran.html +++ b/dev/fortran.html @@ -6,7 +6,7 @@ - Fortran version — Clawpack 5.10.x documentation + Fortran version — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

  • previous |
    • -
  • Clawpack 5.10.x documentation »
    • +
  • Clawpack dev documentation »
  • Fortran version
    • @@ -165,7 +165,7 @@

    More tips -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/fortran_compilers.html b/dev/fortran_compilers.html index 17db8610b..50087af5f 100644 --- a/dev/fortran_compilers.html +++ b/dev/fortran_compilers.html @@ -6,7 +6,7 @@ - Fortran Compilers — Clawpack 5.10.x documentation + Fortran Compilers — Clawpack dev documentation @@ -74,7 +74,7 @@

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    • -
  • Clawpack 5.10.x documentation »
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  • Fortran Compilers
    • @@ -220,7 +220,7 @@

    Navigation

    -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/fvmbook.html b/dev/fvmbook.html index bab97eb6e..d3942effd 100644 --- a/dev/fvmbook.html +++ b/dev/fvmbook.html @@ -6,7 +6,7 @@ - Examples from the book FVMHP — Clawpack 5.10.x documentation + Examples from the book FVMHP — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

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    • -
  • Clawpack 5.10.x documentation »
    • +
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  • Examples from the book FVMHP
    • @@ -129,7 +129,7 @@

    YouTube Videos -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/galleries.html b/dev/galleries.html index c9001a0cb..f1c792644 100644 --- a/dev/galleries.html +++ b/dev/galleries.html @@ -6,7 +6,7 @@ - Clawpack Gallery — Clawpack 5.10.x documentation + Clawpack Gallery — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

  • previous |
    • -
  • Clawpack 5.10.x documentation »
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  • Clawpack Gallery
    • @@ -120,7 +120,7 @@

    Navigation

    -

    Version 5.10.x

    +

    Version dev

    Related Topics

    @@ -1448,7 +1448,7 @@

    Z

    -

    Version 5.10.x

    +

    Version dev

    Related Topics

    @@ -280,7 +280,7 @@

    Navigation

    -

    Version 5.10.x

    +

    Version dev

    Related Topics

    @@ -146,7 +146,7 @@

    Setting up a new example -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/geoclaw_util_module.html b/dev/geoclaw_util_module.html index d7b9c8ef8..c0bcd9677 100644 --- a/dev/geoclaw_util_module.html +++ b/dev/geoclaw_util_module.html @@ -6,7 +6,7 @@ - geoclaw.util module of utility functions — Clawpack 5.10.x documentation + geoclaw.util module of utility functions — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

  • previous |
    • -
  • Clawpack 5.10.x documentation »
    • +
  • Clawpack dev documentation »
  • GeoClaw Description and Detailed Contents »
  • Python tools for working with topo and dtopo »
  • geoclaw.util module of utility functions
    • @@ -266,7 +266,7 @@

    Navigation

    -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/geohints.html b/dev/geohints.html index 75899754b..59223c21f 100644 --- a/dev/geohints.html +++ b/dev/geohints.html @@ -6,7 +6,7 @@ - Cautionary Hints on using GeoClaw — Clawpack 5.10.x documentation + Cautionary Hints on using GeoClaw — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

  • previous |
    • -
  • Clawpack 5.10.x documentation »
    • +
  • Clawpack dev documentation »
  • GeoClaw Description and Detailed Contents »
  • Cautionary Hints on using GeoClaw
    • @@ -183,7 +183,7 @@

    Navigation

    -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/geoplot.html b/dev/geoplot.html index b7af12fb1..6bbaae350 100644 --- a/dev/geoplot.html +++ b/dev/geoplot.html @@ -6,7 +6,7 @@ - GeoClaw plotting tools — Clawpack 5.10.x documentation + GeoClaw plotting tools — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

  • previous |
    • -
  • Clawpack 5.10.x documentation »
    • +
  • Clawpack dev documentation »
  • Plotting with Visclaw »
  • GeoClaw plotting tools
    • @@ -128,7 +128,7 @@

    Tips on latitude-longitude coordinate axes -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/git_versions.html b/dev/git_versions.html index ef6f1f93b..ba0d59c41 100644 --- a/dev/git_versions.html +++ b/dev/git_versions.html @@ -6,7 +6,7 @@ - Keeping track of repository versions with Git — Clawpack 5.10.x documentation + Keeping track of repository versions with Git — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

  • previous |
    • -
  • Clawpack 5.10.x documentation »
    • +
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  • PyClaw »
  • Developers’ Guide »
  • Keeping track of repository versions with Git
    • @@ -124,7 +124,7 @@

    Navigation

    -

    Version 5.10.x

    +

    Version dev

    Related Topics

    @@ -143,7 +143,7 @@

    References -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/grid_registration.html b/dev/grid_registration.html index 52eb23264..bd6005cb2 100644 --- a/dev/grid_registration.html +++ b/dev/grid_registration.html @@ -6,7 +6,7 @@ - Grid registration — Clawpack 5.10.x documentation + Grid registration — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

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    • +
  • Clawpack dev documentation »
  • GeoClaw Description and Detailed Contents »
  • Grid registration
    • @@ -199,7 +199,7 @@

    NetCDF files -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/howto_doc.html b/dev/howto_doc.html index 2f40f7a57..a182bb233 100644 --- a/dev/howto_doc.html +++ b/dev/howto_doc.html @@ -6,7 +6,7 @@ - Guide for updating this documentation — Clawpack 5.10.x documentation + Guide for updating this documentation — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

  • previous |
    • -
  • Clawpack 5.10.x documentation »
    • +
  • Clawpack dev documentation »
  • PyClaw »
  • Developers’ Guide »
  • Guide for updating this documentation
    • @@ -370,7 +370,7 @@

    Pages from other clawpack repositories -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/howto_release.html b/dev/howto_release.html index 567dda2b3..671fadf8e 100644 --- a/dev/howto_release.html +++ b/dev/howto_release.html @@ -6,7 +6,7 @@ - Guide for doing a Clawpack release — Clawpack 5.10.x documentation + Guide for doing a Clawpack release — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

  • previous |
    • -
  • Clawpack 5.10.x documentation »
    • +
  • Clawpack dev documentation »
  • PyClaw »
  • Developers’ Guide »
  • Guide for doing a Clawpack release
    • @@ -185,7 +185,7 @@

    Final releaseChanges to master since v5.9.2 which generate diffs between the latest version and +Changes to master since v5.10.0 which generate diffs between the latest version and the current master branch of each repository.

    @@ -340,7 +340,7 @@

    Updating the Dockerfile -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/index.html b/dev/index.html index 1f745ab3e..da5b6cb10 100644 --- a/dev/index.html +++ b/dev/index.html @@ -5,7 +5,7 @@ - Clawpack documentation — Clawpack 5.10.x documentation + Clawpack documentation — Clawpack dev documentation @@ -65,7 +65,7 @@

    Navigation

  • modules |
    • -
  • Clawpack 5.10.x documentation »
    • +
  • Clawpack dev documentation »
  • Clawpack documentation
    • @@ -252,7 +252,7 @@

    Older versions

    -

    Version 5.10.x

    +

    Version dev

    @@ -148,7 +148,7 @@

    Next steps: -

    Version 5.10.x

    +

    Version dev

    Table of Contents

    diff --git a/dev/installing_fortcodes.html b/dev/installing_fortcodes.html index 75e964399..2ac19632a 100644 --- a/dev/installing_fortcodes.html +++ b/dev/installing_fortcodes.html @@ -6,7 +6,7 @@ - Options for installing Clawpack Fortran codes — Clawpack 5.10.x documentation + Options for installing Clawpack Fortran codes — Clawpack dev documentation @@ -74,7 +74,7 @@

    Navigation

  • previous |
    • -
  • Clawpack 5.10.x documentation »
    • +
  • Clawpack dev documentation »
  • Options for installing Clawpack Fortran codes
    • @@ -106,9 +106,9 @@

    Navigation

    Citing this work)

    After downloading a tar file you can do, e.g.

    -
    tar -xzf clawpack-v5.9.2.tar.gz
-cd clawpack-v5.9.2
-export CLAW=/full/path/to/clawpack-v5.9.2  # in bash
+
    tar -xzf clawpack-v5.10.0.tar.gz
+cd clawpack-v5.10.0
+export CLAW=/full/path/to/clawpack-v5.10.0  # in bash
 
    
 
    
 
    The last command sets an environment variable when using the bash shell.
@@ -126,7 +126,7 @@ 
    Navigation
    
 See Developers’ Guide for more details, but the basic commands are:
    
 
    git clone https://github.com/clawpack/clawpack.git
 cd clawpack
-git checkout v5.9.2     # or an older version; `git tag -l` to list options
+git checkout v5.10.0     # or an older version; `git tag -l` to list options
 git submodule init      # for repositories pyclaw, clawutil, visclaw, etc.
 git submodule update    # clones all the submodule repositories
 export CLAW=/full/path/to/clawpack    # in bash
@@ -162,7 +162,7 @@ 
    Next steps:
     
 
-
    Version 5.10.x
    
+
    Version dev
    
 
    
   
    
     
    Table of Contents
    
diff --git a/dev/installing_pip.html b/dev/installing_pip.html
index 0dc7875c9..916317c5e 100644
--- a/dev/installing_pip.html
+++ b/dev/installing_pip.html
@@ -6,7 +6,7 @@
     
     
 
-    pip install instructions — Clawpack 5.10.x documentation
+    pip install instructions — Clawpack dev documentation
     
     
     
@@ -74,7 +74,7 @@ 
    Navigation
    
         
  • 
           previous |
    • 
-        
  • Clawpack 5.10.x documentation »
    • 
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  • Clawpack dev documentation »
    • 
         
  • pip install instructions
    •  
       
     
      
@@ -104,7 +104,7 @@ 
    Navigation
    
 
    
 
    
 
    or, more specifically,
    
-
    pip install --user clawpack==v5.9.2
+
    pip install --user clawpack==v5.10.0
 
    
 
    
 
    or you can choose a previous version from the PyPi history.
    
@@ -122,7 +122,7 @@ 
    Navigation
    
 (you might want to first read the notes below to see if you
 want to change anything in this command):
    
 
    pip install --src=$HOME/clawpack_src --user --no-build-isolation -e \
-    git+https://github.com/clawpack/clawpack.git@v5.9.2#egg=clawpack
+    git+https://github.com/clawpack/clawpack.git@v5.10.0#egg=clawpack
 
    
 
    
 
    Notes:
    
@@ -135,7 +135,7 @@ 
    Navigation
    
 convert Fortran Riemann solvers to Python versions.  See
 installing_options if you want more control.
    
 
  • This will download Clawpack (via a git clone) into the directory
-$HOME/clawpack_src/clawpack-v5.9.2.  The top
+$HOME/clawpack_src/clawpack-v5.10.0.  The top
 installation directory can be changed by modifying the --src target
 (or omit this part to put it in your current working directory).
 If you have already downloaded Clawpack via a different mechanism then
@@ -152,10 +152,10 @@ 
    Navigation
    
 site-packages directory and delete everything else.)
    • 
 
  • In order to use the Fortran codes within Clawpack (classic,
 amrclaw, or geoclaw), you should then set the environment
-variable CLAW to point to the clawpack-v5.9.2 directory within
+variable CLAW to point to the clawpack-v5.10.0 directory within
 the installation directory $HOME/clawpack_src, and FC to point
 to the desired Fortran compiler, e.g. in the bash shell:
    
-
    export CLAW=$HOME/clawpack_src/clawpack-v5.9.2
+
    export CLAW=$HOME/clawpack_src/clawpack-v5.10.0
 export FC=gfortran
 
    
 
    
@@ -258,7 +258,7 @@ 
    Experimenting with code in the examples directories
     
 
-
    Version 5.10.x
    
+
    Version dev
    
 
    
   
    
     
    Table of Contents
    
diff --git a/dev/kmltools_module.html b/dev/kmltools_module.html
index 8136c823c..e025ea066 100644
--- a/dev/kmltools_module.html
+++ b/dev/kmltools_module.html
@@ -6,7 +6,7 @@
     
     
 
-    kmltools module of utility functions — Clawpack 5.10.x documentation
+    kmltools module of utility functions — Clawpack dev documentation
     
     
     
@@ -74,7 +74,7 @@ 
    Navigation
    
         
  • 
           previous |
    • 
-        
  • Clawpack 5.10.x documentation »
    • 
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  • Clawpack dev documentation »
    • 
           
  • GeoClaw Description and Detailed Contents »
    • 
           
  • Python tools for working with topo and dtopo »
    • 
         
  • kmltools module of utility functions
    •  
@@ -554,7 +554,7 @@ 
    Navigation
    
 
    
     
 
-
    Version 5.10.x
    
+
    Version dev
    
 
    
   
    
     
    Table of Contents
    
diff --git a/dev/lagrangian_gauges.html b/dev/lagrangian_gauges.html
index a5af23f46..d274d45c7 100644
--- a/dev/lagrangian_gauges.html
+++ b/dev/lagrangian_gauges.html
@@ -6,7 +6,7 @@
     
     
 
-    Lagrangian gauges for particle tracking — Clawpack 5.10.x documentation
+    Lagrangian gauges for particle tracking — Clawpack dev documentation
     
     
     
@@ -75,7 +75,7 @@ 
    Navigation
    
         
  • 
           previous |
    • 
-        
  • Clawpack 5.10.x documentation »
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  • GeoClaw Description and Detailed Contents »
    • 
         
  • Lagrangian gauges for particle tracking
    •  
       
@@ -167,7 +167,7 @@ 
    An alternative using fgout grids
     
 
-
    Version 5.10.x
    
+
    Version dev
    
 
    
   
    
     
    Table of Contents
    
diff --git a/dev/license.html b/dev/license.html
index 96057832d..a3f87f3a0 100644
--- a/dev/license.html
+++ b/dev/license.html
@@ -6,7 +6,7 @@
     
     
 
-    License — Clawpack 5.10.x documentation
+    License — Clawpack dev documentation
     
     
     
@@ -66,7 +66,7 @@ 
    Navigation
    
         
  • 
           modules |
    • 
-        
  • Clawpack 5.10.x documentation »
    • 
+        
  • Clawpack dev documentation »
    • 
         
  • License
    •  
       
     
      
@@ -121,7 +121,7 @@ 
    Navigation
    
 
    
     
 
-
    Version 5.10.x
    
+
    Version dev
    
 
    Related Topics
    
 
      
@@ -214,7 +214,7 @@ 
    Duplicate Base Source Name
     
 
-
    Version 5.10.x
    
+
    Version dev
    
 
    
   
    
     
    Table of Contents
    
diff --git a/dev/makefiles_library.html b/dev/makefiles_library.html
index 7cd73675e..f97b104ea 100644
--- a/dev/makefiles_library.html
+++ b/dev/makefiles_library.html
@@ -6,7 +6,7 @@
     
     
 
-    Library routines in Makefiles — Clawpack 5.10.x documentation
+    Library routines in Makefiles — Clawpack dev documentation
     
     
     
@@ -74,7 +74,7 @@ 
    Navigation
    
         
  • 
           previous |
    • 
-        
  • Clawpack 5.10.x documentation »
    • 
+        
  • Clawpack dev documentation »
    • 
         
  • Library routines in Makefiles
    •  
       
     
      
@@ -217,7 +217,7 @@ 
    Using a modified library routine with a different name
     
 
-
    Version 5.10.x
    
+
    Version dev
    
 
    
   
    
     
    Table of Contents
    
diff --git a/dev/manning.html b/dev/manning.html
index 6d540efc6..b320d3a9d 100644
--- a/dev/manning.html
+++ b/dev/manning.html
@@ -6,7 +6,7 @@
     
     
 
-    Manning friction term — Clawpack 5.10.x documentation
+    Manning friction term — Clawpack dev documentation
     
     
     
@@ -75,7 +75,7 @@ 
    Navigation
    
         
  • 
           previous |
    • 
-        
  • Clawpack 5.10.x documentation »
    • 
+        
  • Clawpack dev documentation »
    • 
           
  • GeoClaw Description and Detailed Contents »
    • 
         
  • Manning friction term
    •  
       
@@ -146,7 +146,7 @@ 
    Navigation
    
 
    
     
 
-
    Version 5.10.x
    
+
    Version dev
    
 
    Related Topics
    
 
      
@@ -99,7 +99,7 @@ 
    Navigation
    
 
    
     
 
-
    Version 5.10.x
    
+
    Version dev
    
 
    Related Topics
    
 
@@ -388,7 +388,7 @@ 
    Switching examples
     
 
-
    Version 5.10.x
    
+
    Version dev
    
 
    
   
    
     
    Table of Contents
    
diff --git a/dev/nearshore_interp.html b/dev/nearshore_interp.html
index 957fee665..59f194574 100644
--- a/dev/nearshore_interp.html
+++ b/dev/nearshore_interp.html
@@ -6,7 +6,7 @@
     
     
 
-    Nearshore interpolation — Clawpack 5.10.x documentation
+    Nearshore interpolation — Clawpack dev documentation
     
     
     
@@ -75,7 +75,7 @@ 
    Navigation
    
         
  • 
           previous |
    • 
-        
  • Clawpack 5.10.x documentation »
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  • Clawpack dev documentation »
    • 
           
  • GeoClaw Description and Detailed Contents »
    • 
         
  • Nearshore interpolation
    •  
       
@@ -150,7 +150,7 @@ 
    Navigation
    
 
    
     
 
-
    Version 5.10.x
    
+
    Version dev
    
 
    Related Topics
    
 
      
@@ -96,7 +96,7 @@ 
    Using NetCDF output
     
 
-
    Version 5.10.x
    
+
    Version dev
    
 
    Related Topics
    
 
      
@@ -112,7 +112,7 @@ 
    Navigation
    
 
    
     
 
-
    Version 5.10.x
    
+
    Version dev
    
 
    
   
    
     
    Table of Contents
    
diff --git a/dev/objects.inv b/dev/objects.inv
index 3c3825d5d137f4b6952532e6620901e9398698ed..b1b507b08774905dfed65ecfa73b5dc0345e792c 100644
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-    Which Clawpack solver should I use? — Clawpack 5.10.x documentation
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    Permanent DOI: http://doi.org/10.5281/zenodo.XX
    
 
    Changes relative to Clawpack 5.9.2 (November 4, 2023) are shown below.
    
 
    To see more recent changes that are in the the master branch but not yet
-released, see Changes to master since v5.9.2.
    
+released, see Changes to master since v5.10.0.
    
 
    Follow the links to see changes that have been made to the master branch of
 each repository since the last release (v5.10.0) on XX.
    
 
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    Clawpack 5.6.0 was released on June 2, 2019.  See Installing Clawpack.
    
 
    Changes relative to Clawpack 5.5.0 (Aug 28, 2018) are shown below.
    
 
    To see more recent changes that are in the the master branch but not yet
-released, see Changes to master since v5.9.2.
    
+released, see Changes to master since v5.10.0.
    
 
    
 
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    Clawpack 5.6.1 was released on October 28, 2019. See Installing Clawpack.
    
 
    Changes relative to Clawpack 5.6.0 (June 2, 2019) are shown below.
    
 
    To see more recent changes that are in the the master branch but not yet
-released, see Changes to master since v5.9.2.
    
+released, see Changes to master since v5.10.0.
    
 
    
 
    Changes that are not backward compatible
    
 
    $CLAW/amrclaw/src/2d/amr_module.f90 has changed, so do a make new in
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 [DOI 10.5281/zenodo.3764278].
    
 
    Changes relative to Clawpack 5.6.1 (October 28, 2019) are shown below.
    
 
    To see more recent changes that are in the the master branch but not yet
-released, see Changes to master since v5.9.2.
    
+released, see Changes to master since v5.10.0.
    
 
    
 
    Python support
    
 
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 [DOI 10.5281/zenodo.4025432].
    
 
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diff --git a/dev/release_5_8_0.html b/dev/release_5_8_0.html
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@@ -262,7 +262,7 @@ 
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diff --git a/dev/release_5_8_1.html b/dev/release_5_8_1.html
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diff --git a/dev/release_5_8_2.html b/dev/release_5_8_2.html
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-    v5.8.2 release notes — Clawpack 5.10.x documentation
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diff --git a/dev/release_5_9_0.html b/dev/release_5_9_0.html
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-    v5.9.0 release notes — Clawpack 5.10.x documentation
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@@ -82,7 +82,7 @@ 
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@@ -224,7 +224,7 @@ 
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diff --git a/dev/release_5_9_1.html b/dev/release_5_9_1.html
index 37dcab012..509068bbf 100644
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@@ -242,7 +242,7 @@ 
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diff --git a/dev/release_5_9_2.html b/dev/release_5_9_2.html
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-    v5.9.2 release notes — Clawpack 5.10.x documentation
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@@ -82,7 +82,7 @@ 
    Navigation
    
 
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    Changes relative to Clawpack 5.9.2 (October 2, 2023) are shown below.
    
 
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@@ -172,7 +172,7 @@ 
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diff --git a/dev/releases.html b/dev/releases.html
index 54c7802bf..2fe277e6b 100644
--- a/dev/releases.html
+++ b/dev/releases.html
@@ -6,7 +6,7 @@
     
     
 
-    Releases of Clawpack and release notes — Clawpack 5.10.x documentation
+    Releases of Clawpack and release notes — Clawpack dev documentation
     
     
     
@@ -74,7 +74,7 @@ 
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    Other notes:PyClaw changelog.
 Starting with v5.9.0, changes will be recorded in the release notes along
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    • 
-
  • See Changes to master since v5.9.2 for changes to the master branch on Github
+
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@@ -114,8 +114,8 @@ 
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@@ -176,7 +176,7 @@ 
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diff --git a/dev/riemann.html b/dev/riemann.html
index 0199aa8b5..cabe39018 100644
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-    Riemann solvers — Clawpack 5.10.x documentation
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diff --git a/dev/riemann/Shallow_water_Riemann_solvers.html b/dev/riemann/Shallow_water_Riemann_solvers.html
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-    Shallow water Riemann solvers in Clawpack — Clawpack 5.10.x documentation
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diff --git a/dev/ruled_rectangles.html b/dev/ruled_rectangles.html
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@@ -559,7 +559,7 @@ 
    Example covering the continental shelf
     
 
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diff --git a/dev/sealevel.html b/dev/sealevel.html
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32, 36, 37, 42, 47, 55, 63, 76, 77, 81, 94, 97, 99, 104, 125, 130, 135, 149, 150, 152, 154, 162, 164], "facecolor": [2, 82, 118, 136, 147], "background": [2, 81, 127, 147], "behind": [2, 42, 70, 144, 151], "By": [2, 15, 32, 44, 49, 51, 55, 57, 63, 75, 82, 84, 88, 94, 98, 100, 107, 127, 142, 145, 156, 157, 164, 170], "theme": 2, "tan": [2, 82], "public": [2, 4, 13, 17, 23, 138], "probabl": [2, 13, 30, 55, 68, 70, 110, 111], "w": [2, 17, 51, 140, 170], "white": [2, 63, 118], "keyword": [2, 3, 82, 88, 93, 94, 97, 103, 109, 116, 127, 147, 158, 164], "12": [2, 34, 42, 55, 70, 82, 142, 147], "5": [2, 4, 5, 8, 9, 11, 13, 18, 19, 21, 27, 32, 34, 35, 36, 37, 41, 42, 45, 47, 49, 51, 55, 56, 57, 58, 59, 63, 64, 66, 67, 68, 70, 75, 82, 92, 94, 98, 99, 101, 102, 104, 110, 111, 115, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 148, 149, 150, 151, 152, 158, 161, 162, 164, 169], "would": [2, 3, 12, 13, 16, 26, 29, 30, 34, 36, 41, 44, 55, 57, 59, 62, 64, 66, 67, 70, 72, 75, 77, 82, 86, 88, 91, 94, 98, 109, 116, 125, 142, 143, 144, 147, 148, 151, 158, 162, 167], "inch": [2, 55, 63, 82, 147], "red": [2, 3, 30, 47, 63, 82, 116, 147], "option": [2, 12, 13, 16, 19, 22, 24, 27, 30, 31, 32, 34, 36, 37, 38, 39, 43, 44, 51, 54, 57, 60, 62, 66, 71, 77, 81, 82, 88, 89, 91, 93, 94, 95, 97, 98, 100, 103, 104, 105, 108, 109, 111, 112, 115, 116, 118, 120, 123, 124, 125, 128, 130, 133, 135, 137, 142, 146, 147, 148, 150, 151, 152, 153, 158, 164], "clf_each_fram": 2, "clf": 2, "axes1": [2, 84], "shown": [3, 13, 18, 19, 58, 63, 67, 68, 71, 78, 98, 118, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 142, 164, 167], "fragment": 3, "typic": [3, 22, 42, 66, 67, 71, 72, 75, 77, 78, 84, 89, 99, 101, 104, 106, 115, 149, 150, 161, 162, 165, 166, 167, 170], "assum": [3, 5, 22, 24, 32, 34, 36, 37, 39, 42, 49, 51, 52, 55, 57, 58, 59, 63, 71, 75, 81, 97, 98, 100, 101, 102, 108, 109, 115, 123, 136, 142, 143, 148, 151, 158, 159, 162, 164, 166, 170], "instanc": [3, 30, 37, 55, 75, 78, 84, 88, 89, 91, 94, 97, 98, 101, 142, 151], "type": [3, 4, 7, 13, 17, 18, 22, 30, 32, 38, 39, 43, 47, 48, 55, 66, 71, 82, 83, 84, 88, 89, 90, 92, 94, 97, 99, 100, 104, 105, 108, 109, 142, 149, 150, 151, 158, 159, 162, 164, 170], "dimension": [3, 7, 8, 17, 19, 24, 27, 32, 34, 36, 38, 39, 47, 49, 52, 56, 71, 94, 101, 123, 124, 126, 129, 150, 151, 152, 164, 167], "point": [3, 5, 6, 13, 15, 16, 17, 22, 30, 32, 35, 36, 38, 39, 41, 42, 44, 47, 48, 49, 50, 51, 52, 55, 57, 58, 59, 61, 62, 63, 64, 71, 72, 75, 88, 98, 99, 103, 109, 110, 111, 115, 118, 126, 128, 130, 136, 139, 140, 142, 143, 144, 145, 146, 148, 149, 150, 151, 156, 157, 158, 162, 164, 165, 167], "slice": [3, 49, 71, 140], "scatter": [3, 24, 71], "radial": [3, 18, 34, 49, 51, 151, 167], "symmetr": [3, 49, 51, 167], "between": [3, 4, 5, 6, 13, 16, 25, 27, 30, 32, 33, 34, 36, 37, 41, 51, 55, 59, 63, 70, 71, 72, 75, 76, 78, 81, 91, 94, 98, 104, 106, 107, 109, 110, 111, 115, 118, 124, 125, 140, 142, 143, 148, 149, 150, 151, 152, 153, 154, 161, 162, 164, 166, 167], "plot_var": [3, 29, 47, 55, 82, 83], "fill_var2": 3, "diment": 3, "raster": [3, 55, 57, 135, 162], "contour": [3, 32, 47, 55, 57, 71, 110, 147, 164], "pcolor": [3, 47, 81, 110, 118, 135, 164], "2d_schlieren": 3, "schlieren": [3, 71], "2d_patch": [3, 24], "cell": [3, 4, 5, 7, 8, 15, 16, 18, 19, 22, 24, 27, 29, 34, 35, 36, 37, 47, 48, 49, 55, 57, 63, 70, 71, 72, 76, 77, 78, 88, 94, 97, 99, 102, 104, 106, 108, 115, 119, 120, 124, 125, 126, 127, 128, 129, 130, 132, 136, 140, 143, 144, 145, 148, 149, 150, 152, 154, 159, 161, 162, 167, 170], "patch": [3, 6, 7, 16, 19, 24, 29, 34, 42, 55, 71, 75, 76, 77, 81, 82, 97, 99, 103, 106, 115, 125, 127, 130, 132, 144, 147, 149, 161, 162, 167], "edg": [3, 6, 15, 16, 19, 29, 32, 34, 35, 36, 37, 41, 49, 63, 75, 94, 102, 140, 142, 145, 149, 150, 152, 167], "hillshad": [3, 118], "come": [3, 30, 82, 84, 93, 99, 104, 123, 162, 167], "parent": [3, 29, 94, 106, 109], "integ": [3, 34, 35, 36, 47, 55, 63, 68, 70, 82, 89, 97, 103, 115, 118, 126, 129, 140, 148, 151, 158, 164], "compon": [3, 16, 19, 22, 24, 27, 39, 47, 61, 62, 71, 77, 81, 101, 103, 105, 106, 115, 123, 132, 141, 148, 149, 150, 162, 167], "correspond": [3, 6, 12, 25, 27, 29, 32, 35, 36, 37, 47, 49, 51, 52, 57, 58, 59, 63, 71, 75, 82, 88, 92, 94, 97, 98, 101, 103, 106, 115, 116, 140, 142, 143, 148, 149, 150, 151, 152, 158, 162, 166, 167], "appli": [3, 4, 5, 6, 13, 16, 17, 19, 27, 32, 52, 55, 57, 68, 70, 75, 82, 84, 92, 94, 97, 104, 115, 139, 148, 151, 167], "comput": [3, 4, 5, 6, 13, 16, 17, 18, 19, 29, 31, 32, 34, 35, 36, 37, 42, 47, 49, 51, 55, 57, 62, 63, 64, 66, 72, 75, 81, 82, 84, 89, 91, 94, 96, 97, 98, 99, 104, 108, 111, 113, 115, 118, 119, 120, 124, 125, 129, 132, 135, 137, 140, 144, 148, 150, 151, 152, 159, 162, 167, 170], "signatur": [3, 89, 92, 94, 95, 97, 102, 158], "hold": [3, 37, 84, 108, 115], "current": [3, 5, 13, 14, 19, 22, 24, 26, 29, 30, 31, 32, 34, 37, 41, 42, 44, 47, 48, 49, 52, 57, 58, 59, 61, 62, 63, 64, 71, 73, 77, 82, 84, 94, 97, 98, 99, 104, 106, 109, 111, 115, 116, 118, 124, 126, 127, 137, 139, 143, 147, 148, 149, 150, 151, 152, 154, 158, 159, 162, 164, 166], "afteritem": [3, 29], "afterpatch": [3, 29], "There": [3, 6, 13, 24, 36, 39, 43, 55, 58, 59, 66, 70, 75, 77, 84, 85, 98, 105, 113, 126, 127, 147, 148, 154, 159, 160, 167, 169], "calcul": [3, 5, 6, 18, 19, 29, 32, 35, 37, 48, 51, 71, 75, 82, 94, 102, 104, 118, 120, 125, 164], "cd": [3, 13, 30, 38, 39, 40, 56, 58, 59, 61, 62, 84, 93, 96, 99, 105, 116, 160], "On": [3, 5, 13, 55, 76, 85, 126, 136, 142, 146, 167], "ylower": [3, 24, 29, 42, 89, 127, 150, 162, 164], "patchno": [3, 29], "out": [3, 16, 17, 26, 28, 31, 32, 34, 36, 37, 38, 39, 42, 47, 48, 49, 54, 56, 57, 58, 59, 62, 63, 64, 65, 66, 71, 75, 82, 85, 86, 88, 89, 91, 97, 98, 99, 100, 103, 108, 110, 111, 113, 116, 125, 127, 129, 130, 140, 142, 149, 150, 152, 158, 164, 165], "lower": [3, 24, 32, 34, 35, 41, 49, 57, 70, 77, 94, 99, 142, 144, 148, 150, 152, 162, 164, 166], "left": [3, 5, 10, 13, 16, 20, 27, 29, 32, 34, 57, 77, 84, 94, 101, 102, 108, 118, 126, 132, 135, 136, 137, 138, 139, 140, 143, 149, 162, 164, 166, 170], "mappedgrid": [3, 71], "map": [3, 16, 18, 31, 32, 42, 48, 63, 70, 71, 82, 86, 89, 94, 96, 101, 115, 123, 127, 132, 141, 164, 170], "mapc2p": [3, 27, 29, 49, 71, 89, 94, 132], "underli": [3, 55, 125], "requir": [3, 4, 16, 18, 19, 22, 24, 27, 29, 30, 32, 34, 36, 37, 38, 39, 43, 48, 49, 51, 52, 59, 62, 70, 71, 75, 78, 81, 84, 85, 88, 89, 94, 97, 100, 101, 104, 105, 106, 108, 109, 110, 115, 116, 118, 119, 120, 123, 125, 128, 130, 132, 135, 137, 140, 141, 142, 147, 148, 149, 150, 151, 152, 158, 159, 162, 165, 168, 170], "depend": [3, 13, 16, 30, 31, 32, 34, 37, 38, 39, 43, 44, 50, 52, 55, 66, 68, 71, 75, 82, 87, 97, 102, 103, 104, 109, 111, 115, 127, 144, 149, 151, 164, 165, 167, 170], "summar": [3, 30, 33, 115, 117, 167], "plotstyl": [3, 47, 82, 147], "anyth": [3, 6, 30, 31, 62, 67, 116, 127], "valid": [3, 52, 75, 91, 98, 103, 106, 125, 151, 158, 159, 164], "fmt": 3, "group": [3, 13, 26, 30, 32, 52, 93, 97, 99, 107, 124, 140], "solid": [3, 16, 55, 75, 101, 147, 148, 150, 152], "dash": [3, 99], "o": [3, 5, 17, 41, 42, 43, 70, 72, 82, 85, 86, 89, 97, 98, 107, 127, 150, 164, 167], "circl": [3, 51, 82, 118], "bo": 3, "blue": [3, 11, 42, 47, 63, 70, 82, 142, 164], "though": [3, 42, 78, 158, 162], "also": [3, 4, 5, 6, 7, 8, 9, 11, 12, 16, 17, 18, 19, 20, 22, 24, 25, 26, 27, 30, 31, 32, 34, 35, 36, 37, 38, 39, 40, 41, 42, 44, 45, 46, 47, 48, 49, 51, 52, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 66, 67, 70, 71, 75, 76, 77, 78, 81, 82, 84, 88, 90, 91, 94, 96, 97, 98, 99, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 118, 119, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 146, 148, 149, 150, 151, 152, 153, 156, 157, 158, 159, 160, 161, 162, 164, 165, 166, 167, 169, 170], "overrul": 3, "r": [3, 4, 6, 17, 30, 47, 51, 56, 58, 70, 71, 74, 82, 88, 92, 99, 101, 118, 140, 142, 147, 164, 170], "ff0000": [3, 63], "No": [3, 43, 55, 59, 71, 94, 104, 133, 140, 148, 151, 165], "extra": [3, 55, 141], "give": [3, 6, 9, 10, 13, 16, 17, 18, 19, 26, 30, 32, 34, 35, 36, 38, 39, 47, 49, 56, 63, 64, 70, 72, 75, 76, 77, 82, 84, 99, 100, 104, 116, 120, 124, 125, 129, 132, 142, 148, 151, 162, 164, 166], "polygon": [3, 7, 41, 55, 63, 130, 164], "curv": [3, 47, 81, 142], "fill_between": 3, "plot_var2": 3, "zero": [3, 16, 32, 34, 42, 44, 47, 63, 71, 72, 88, 101, 102, 106, 108, 132, 142, 143], "fill_wher": 3, "plotitem": [3, 29, 47, 82, 147], "mean": [3, 13, 24, 30, 34, 42, 47, 52, 56, 62, 71, 72, 98, 99, 115, 118, 140, 143, 148, 150, 152, 166], "map_2d_to_1d": 3, "In": [3, 5, 6, 8, 11, 12, 15, 16, 18, 19, 21, 22, 24, 29, 32, 34, 36, 41, 44, 47, 48, 49, 52, 55, 56, 57, 58, 59, 62, 63, 64, 66, 67, 70, 71, 72, 74, 75, 77, 78, 82, 83, 84, 88, 89, 94, 96, 97, 98, 99, 100, 101, 102, 104, 106, 109, 111, 112, 113, 115, 118, 119, 120, 123, 124, 125, 127, 128, 132, 136, 139, 140, 142, 144, 145, 146, 148, 149, 151, 156, 157, 162, 164, 165, 167, 170], "about": [3, 5, 7, 13, 14, 16, 18, 19, 24, 27, 35, 36, 37, 38, 39, 43, 49, 51, 52, 57, 59, 63, 66, 68, 71, 77, 83, 85, 88, 96, 97, 99, 104, 111, 116, 124, 128, 130, 135, 136, 140, 147, 149, 150, 151, 162, 165, 167, 170], "j": [3, 4, 5, 15, 17, 22, 24, 29, 35, 42, 56, 63, 70, 71, 77, 84, 96, 97, 115, 119, 120, 144, 145], "v": [3, 16, 27, 31, 32, 34, 36, 37, 51, 64, 67, 116, 124, 149, 162], "radiu": [3, 151, 158, 159, 164], "q0_vs_radiu": 3, "convert": [3, 24, 27, 32, 35, 37, 45, 51, 55, 62, 63, 66, 75, 78, 89, 96, 101, 109, 110, 127, 130, 136, 137, 148, 149, 158, 162, 166], "numpi": [3, 13, 32, 34, 36, 37, 42, 51, 70, 85, 87, 88, 89, 91, 94, 101, 106, 107, 108, 110, 116, 137, 141, 142, 150, 164, 165], "sqrt": [3, 34, 37, 49, 68, 88, 101, 102, 108, 150], "q0": [3, 101], "work": [3, 5, 8, 13, 16, 19, 21, 22, 24, 26, 27, 28, 30, 31, 34, 36, 38, 39, 43, 48, 52, 55, 56, 57, 58, 59, 60, 61, 62, 63, 70, 71, 74, 75, 76, 82, 85, 86, 87, 88, 90, 91, 92, 96, 97, 98, 99, 102, 104, 105, 110, 111, 113, 114, 115, 116, 118, 121, 122, 123, 124, 125, 126, 127, 130, 132, 133, 138, 140, 146, 147, 148, 149, 153, 159, 162, 165, 169], "symbol": [3, 71, 111], "best": [3, 4, 16, 24, 28, 30, 36, 44, 49, 55, 57, 59, 60, 66, 72, 74, 76, 81, 82, 97, 101, 113, 114, 115, 116, 127, 138, 140, 151, 155, 158, 162, 167], "descript": [3, 4, 6, 9, 24, 25, 27, 32, 36, 37, 63, 71, 75, 78, 81, 96, 97, 109, 113, 115, 137, 140, 141, 151, 158, 162, 170], "celledges_show": [3, 24], "draw": 3, "amr_celledges_show": 3, "level": [3, 6, 7, 16, 19, 25, 29, 31, 34, 36, 41, 42, 47, 48, 50, 51, 52, 55, 58, 59, 61, 62, 71, 72, 76, 77, 89, 91, 94, 96, 97, 98, 104, 111, 112, 115, 116, 119, 120, 124, 125, 127, 130, 139, 142, 143, 146, 148, 149, 150, 152, 161, 162, 164, 166, 167], "patchedges_show": [3, 24], "mostli": [3, 81, 96, 130, 137], "contour_level": [3, 164], "three": [3, 13, 17, 24, 32, 34, 37, 52, 55, 67, 71, 75, 99, 103, 109, 116, 142, 148, 151, 162, 164, 167], "contour_nlevel": 3, "contour_min": 3, "minimum": [3, 19, 34, 47, 55, 75, 108, 125, 151, 164], "contour_max": 3, "maximum": [3, 24, 32, 34, 35, 36, 48, 71, 72, 104, 108, 115, 119, 120, 127, 130, 148, 149, 150, 152, 158, 159], "contour_color": 3, "specif": [3, 5, 12, 19, 24, 30, 32, 47, 48, 49, 51, 55, 56, 62, 65, 67, 68, 77, 86, 87, 89, 91, 96, 97, 98, 102, 103, 109, 113, 125, 126, 127, 130, 147, 148, 149, 150, 152, 159, 162], "b": [3, 5, 17, 30, 32, 34, 35, 36, 37, 42, 47, 49, 56, 58, 59, 68, 72, 82, 104, 115, 123, 130, 142, 143, 144, 151, 164, 166], "0000ff": [3, 63], "colormap": [3, 32, 42, 50, 55, 70, 71, 81, 83, 124, 130, 164], "amr_contour_color": 3, "As": [3, 18, 19, 39, 42, 48, 49, 52, 58, 59, 63, 64, 88, 108, 110, 114, 118, 119, 130, 140, 141, 144, 151, 154, 160, 167], "black": [3, 47], "subsequ": [3, 10, 71], "both": [3, 16, 18, 19, 30, 32, 35, 36, 37, 38, 39, 41, 42, 47, 52, 57, 60, 62, 67, 70, 71, 75, 77, 89, 97, 98, 99, 104, 105, 115, 116, 123, 124, 127, 130, 135, 140, 141, 142, 144, 148, 149, 150, 152, 156, 162, 167], "fine": [3, 19, 34, 35, 36, 42, 49, 58, 74, 78, 96, 101, 115, 118, 125, 132, 142, 144, 148, 149, 151, 162, 167], "coars": [3, 34, 36, 55, 115, 118, 125, 132, 148, 162, 167], "anoth": [3, 19, 24, 34, 36, 42, 47, 51, 55, 62, 63, 77, 81, 85, 93, 104, 107, 116, 127, 158, 167], "refin": [3, 4, 5, 7, 8, 17, 19, 24, 36, 48, 49, 52, 55, 56, 57, 70, 71, 77, 78, 88, 125, 127, 128, 130, 132, 142, 144, 147, 148, 149, 150, 161, 162, 167], "region": [3, 6, 7, 13, 16, 19, 24, 34, 36, 41, 42, 48, 52, 53, 55, 63, 68, 72, 75, 78, 113, 118, 127, 130, 132, 143, 144, 149, 150, 154, 162, 164], "lack": 3, "hidden": [3, 66, 82], "blank": [3, 35, 63, 158], "coarser": [3, 16, 19, 57, 125, 144, 148, 149, 167], "easili": [3, 13, 30, 34, 55, 58, 71, 82, 89, 94, 105, 109, 116, 118, 130, 153], "contour_show": 3, "commonli": [3, 19, 71, 82, 84], "amr_contour_show": 3, "determin": [3, 5, 6, 32, 34, 37, 42, 47, 48, 49, 52, 54, 55, 58, 63, 72, 75, 82, 92, 94, 97, 102, 106, 111, 115, 120, 124, 125, 139, 142, 143, 147, 148, 149, 151, 164, 167], "whether": [3, 6, 13, 16, 24, 51, 57, 60, 62, 64, 65, 66, 71, 86, 94, 97, 98, 102, 103, 104, 115, 116, 125, 140, 142, 148, 149, 151, 164], "view": [3, 4, 24, 36, 38, 39, 47, 48, 49, 51, 55, 57, 58, 63, 77, 81, 83, 84, 88, 99, 105, 110, 123, 127, 153, 155], "finest": [3, 19, 34, 36, 42, 47, 72, 127, 161, 164], "contour_kwarg": [3, 164], "pcolor_cmap": [3, 55], "pcolor_cmin": 3, "pcolor_cmax": 3, "thei": [3, 5, 6, 13, 16, 18, 19, 26, 29, 30, 32, 34, 36, 41, 42, 45, 47, 49, 52, 55, 58, 59, 62, 63, 64, 67, 70, 71, 77, 81, 94, 96, 101, 104, 109, 115, 116, 125, 132, 144, 147, 151, 154, 158, 162, 164, 167], "chosen": [3, 31, 34, 41, 42, 49, 55, 57, 70, 108, 115, 132, 143, 149], "vari": [3, 15, 17, 27, 32, 42, 48, 49, 57, 68, 72, 101, 103, 123, 130, 140, 141, 143, 145, 149, 151, 170], "yield": [3, 18, 19], "veri": [3, 5, 16, 17, 18, 19, 24, 49, 52, 55, 59, 60, 63, 75, 82, 86, 89, 97, 98, 99, 100, 101, 104, 116, 118, 120, 124, 135, 142, 144, 148, 159, 162], "confus": [3, 57, 62, 111, 132, 140], "add_colorbar": [3, 32, 164], "ad": [3, 12, 16, 22, 24, 26, 27, 29, 31, 34, 36, 37, 44, 47, 51, 57, 58, 59, 62, 63, 64, 68, 71, 72, 75, 82, 87, 89, 92, 94, 95, 98, 99, 111, 112, 113, 115, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 133, 135, 136, 137, 139, 144, 148, 149, 151, 154, 158, 161, 164, 168], "imshow_cmap": 3, "imshow_cmin": 3, "imshow_cmax": 3, "hillshade_vertical_exagger": 3, "vertic": [3, 32, 41, 52, 55, 63, 70, 142, 143, 151, 164, 166], "exagger": 3, "calul": 3, "hillshade_azimuth_degre": 3, "light": [3, 55, 71, 115], "sourc": [3, 4, 17, 18, 19, 25, 27, 30, 32, 44, 48, 49, 55, 56, 58, 59, 61, 62, 63, 65, 67, 68, 81, 86, 89, 93, 94, 95, 104, 105, 107, 108, 109, 113, 114, 116, 118, 125, 126, 127, 136, 137, 141, 143, 148, 150, 151, 152, 155, 156, 157, 158, 162], "azimuth": 3, "angl": [3, 16, 32, 51, 75], "315": 3, "northwest": 3, "360": [3, 51, 55, 75], "degre": [3, 32, 49, 51, 55, 63, 72, 75], "clockwis": [3, 34, 51, 75, 164], "north": [3, 34, 42, 49, 51, 70, 75], "recommend": [3, 4, 18, 19, 32, 34, 36, 38, 39, 58, 59, 60, 62, 76, 81, 90, 94, 96, 97, 99, 100, 104, 105, 107, 108, 115, 127, 135, 137, 148, 150, 152, 168], "proper": [3, 6, 15, 42, 47, 56, 57, 58, 59, 63, 68, 70, 71, 97, 109, 119, 125, 145, 149, 150, 156, 157, 158, 167], "interpret": [3, 32, 57, 75, 97, 127, 162], "peopl": [3, 4, 12, 13, 86], "hillshade_altitude_degre": 3, "altitud": 3, "horizon": 3, "45": [3, 104], "90": [3, 27, 32, 49, 55, 67, 75, 105, 107, 136], "hillshade_latlon": 3, "correct": [3, 18, 19, 22, 30, 44, 58, 59, 67, 68, 71, 82, 88, 94, 97, 99, 103, 109, 119, 120, 124, 144, 148, 150, 151, 152], "unit": [3, 32, 49, 50, 51, 56, 75, 94, 125, 136, 158], "z": [3, 42, 57, 63, 70, 71, 88, 94, 102, 108, 142, 148, 149, 162, 164], "111200": 3, "reflect": [3, 4, 5, 16, 30, 115, 127, 148, 150, 152], "relat": [3, 7, 19, 24, 26, 58, 78, 102, 113, 126, 130, 132, 143], "pre": [3, 13, 35, 59, 90, 97], "pend": 3, "amr_": [3, 7], "whose": [3, 49, 82, 89, 101, 102, 144, 148, 149, 164], "origin": [3, 6, 13, 16, 18, 19, 22, 30, 32, 36, 37, 45, 47, 56, 58, 63, 70, 76, 77, 89, 104, 109, 119, 125, 132, 139, 149, 150, 151, 152, 164], "hand": [3, 5, 19, 20, 21, 22, 68, 88, 116, 118, 135, 136, 137, 142], "higher": [3, 6, 18, 19, 55, 94, 104, 105, 115, 130, 140, 142, 143, 144], "shorter": [3, 115, 164], "last": [3, 20, 29, 34, 36, 59, 61, 82, 88, 89, 101, 108, 118, 124, 135, 136, 137, 148, 158], "repeatedli": [3, 99, 105, 149], "finer": [3, 7, 19, 34, 55, 115, 119, 120, 142, 148, 149], "celledg": [3, 32, 49], "colorbar_shrink": [3, 32], "colorbar_label": 3, "colorbar_tick": 3, "colorbar_tick_label": 3, "colorbar_extend": [3, 136], "colorbar_kwarg": [3, 127], "stand": [4, 132], "conserv": [4, 5, 6, 17, 18, 19, 98, 104, 106, 128, 141, 167, 170], "law": [4, 17, 63, 151, 170], "packag": [4, 27, 30, 31, 38, 39, 55, 59, 60, 67, 77, 78, 81, 85, 86, 88, 94, 96, 98, 100, 101, 103, 105, 108, 110, 111, 118, 129, 130, 165, 168], "wa": [4, 5, 6, 14, 19, 21, 22, 27, 31, 32, 34, 35, 36, 37, 42, 49, 52, 54, 58, 59, 66, 68, 70, 71, 75, 82, 99, 103, 104, 106, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 139, 142, 144, 161, 162, 164], "initi": [4, 5, 7, 12, 13, 18, 19, 24, 27, 32, 36, 37, 47, 48, 49, 51, 52, 55, 59, 64, 67, 71, 72, 75, 77, 78, 84, 86, 87, 88, 89, 91, 92, 94, 95, 97, 98, 102, 103, 104, 106, 107, 109, 112, 115, 124, 127, 130, 132, 140, 143, 148, 149, 150, 152, 154, 158, 162, 164], "develop": [4, 6, 7, 12, 13, 19, 20, 24, 25, 45, 52, 56, 58, 61, 62, 65, 70, 71, 81, 85, 86, 89, 96, 101, 104, 105, 111, 113, 116, 118, 127, 128, 130, 132, 135, 136, 137, 140, 143, 144, 150], "linear": [4, 5, 17, 18, 19, 32, 36, 37, 47, 49, 55, 72, 75, 82, 88, 92, 104, 118, 128, 140, 141, 142], "nonlinear": [4, 5, 17, 52, 92, 140, 148, 170], "hyperbol": [4, 5, 6, 17, 18, 19, 45, 78, 89, 96, 101, 102, 108, 140, 148, 151, 167, 170], "system": [4, 16, 17, 18, 19, 25, 39, 40, 48, 55, 56, 62, 63, 67, 76, 77, 86, 96, 97, 98, 99, 101, 102, 105, 108, 111, 116, 118, 140, 148, 150, 152, 160, 167, 170], "focu": [4, 48], "high": [4, 17, 34, 52, 55, 70, 72, 75, 78, 89, 96, 104, 140, 143, 144, 166, 167], "resolut": [4, 6, 17, 32, 34, 36, 42, 47, 64, 72, 75, 94, 104, 108, 109, 119, 123, 127, 128, 135, 140, 143, 162, 164, 166, 167], "godunov": [4, 94, 104, 148, 150, 152, 167], "method": [4, 5, 7, 17, 19, 34, 36, 37, 41, 45, 47, 57, 70, 72, 82, 84, 88, 91, 92, 94, 99, 103, 104, 109, 115, 116, 123, 140, 147, 148, 149, 150, 152, 158, 161, 162, 164, 167], "framework": [4, 86, 89, 124, 125], "applic": [4, 6, 15, 16, 18, 19, 21, 22, 24, 25, 26, 30, 31, 36, 37, 38, 39, 40, 44, 45, 46, 47, 48, 50, 59, 61, 62, 67, 70, 76, 77, 84, 93, 94, 95, 96, 98, 104, 109, 112, 114, 115, 116, 118, 119, 122, 123, 125, 126, 127, 129, 130, 140, 142, 144, 145, 148, 151, 156, 157, 162, 164, 165, 167, 168], "finit": [4, 17, 34, 36, 45, 49, 57, 63, 70, 71, 72, 75, 104, 130, 142, 151, 161, 162, 167], "volum": [4, 17, 31, 34, 36, 45, 49, 57, 63, 70, 71, 72, 96, 130, 142, 149, 151, 161, 162, 167], "riemann": [4, 5, 8, 22, 24, 25, 30, 31, 48, 59, 62, 67, 78, 86, 88, 94, 95, 104, 105, 106, 108, 111, 146, 148, 150, 152, 156, 157, 170], "solver": [4, 5, 6, 22, 24, 25, 27, 30, 48, 49, 60, 61, 62, 67, 85, 86, 87, 91, 94, 95, 98, 106, 118, 121, 123, 125, 126, 127, 128, 129, 130, 132, 137, 148, 150, 152, 156, 157, 170], "resolv": [4, 34, 36, 55, 58, 62, 113, 127, 144], "jump": [4, 5, 71, 84, 94, 104, 125, 148, 170], "discontinu": [4, 104, 170], "interfac": [4, 21, 24, 71, 86, 89, 92, 96, 97, 102, 104, 109, 140, 167, 168, 170], "wave": [4, 5, 6, 16, 17, 18, 27, 34, 42, 48, 49, 52, 55, 56, 75, 92, 94, 96, 101, 102, 104, 115, 123, 125, 126, 132, 141, 142, 143, 148, 149, 150, 151, 152, 154, 167], "propag": [4, 5, 6, 17, 18, 19, 27, 32, 49, 52, 55, 56, 75, 94, 96, 104, 115, 125, 140], "neighbor": [4, 18, 19, 36, 42, 70, 72, 115, 125, 144, 149, 150, 164], "formul": [4, 5, 19, 52, 68, 140, 148], "allow": [4, 6, 13, 24, 29, 30, 31, 34, 36, 37, 41, 42, 47, 48, 51, 54, 55, 57, 58, 62, 68, 70, 71, 75, 76, 78, 81, 82, 91, 96, 97, 98, 104, 106, 109, 110, 111, 115, 116, 119, 120, 123, 124, 125, 126, 127, 129, 130, 132, 135, 136, 137, 140, 142, 148, 150, 151, 152, 153, 158, 162, 164, 166], "easi": [4, 6, 11, 31, 41, 62, 71, 89, 98, 99, 100, 142, 153, 167], "extens": [4, 17, 19, 24, 26, 30, 32, 52, 55, 58, 62, 67, 71, 89, 96, 97, 109, 125, 126, 132, 148, 160, 164, 170], "problem": [4, 5, 7, 16, 17, 18, 19, 22, 26, 27, 29, 30, 31, 38, 39, 42, 45, 48, 49, 62, 66, 70, 71, 72, 75, 78, 82, 85, 87, 88, 93, 95, 96, 99, 102, 104, 107, 111, 116, 119, 120, 122, 123, 126, 130, 132, 136, 137, 140, 142, 144, 148, 149, 150, 151, 152, 153, 154, 161, 165], "algorithm": [4, 7, 19, 27, 34, 41, 42, 48, 56, 88, 94, 96, 97, 104, 108, 115, 127, 140, 142, 148, 150, 152, 164], "brief": [4, 59, 141, 151], "subroutin": [4, 6, 9, 16, 24, 34, 36, 67, 115, 123, 140, 148, 149, 161, 167, 170], "equat": [4, 5, 16, 17, 18, 27, 38, 39, 48, 49, 52, 64, 68, 82, 87, 88, 89, 91, 96, 97, 98, 101, 104, 105, 106, 118, 120, 123, 125, 127, 128, 140, 148, 150, 151, 152, 154, 162, 167, 170], "solv": [4, 5, 8, 16, 17, 18, 19, 22, 28, 38, 39, 49, 52, 60, 62, 64, 87, 89, 91, 94, 96, 101, 102, 105, 118, 128, 140, 141, 148, 162, 167, 170], "adapt": [4, 7, 17, 19, 32, 42, 49, 56, 57, 70, 71, 78, 88, 115, 127, 130, 132, 140, 142, 147, 148, 149, 151, 167], "mesh": [4, 7, 17, 19, 35, 49, 56, 70, 71, 78, 81, 88, 115, 130, 147, 148, 167], "amrclaw": [4, 5, 6, 12, 15, 16, 19, 21, 22, 24, 25, 26, 30, 38, 39, 41, 42, 44, 46, 47, 48, 50, 56, 59, 60, 61, 62, 64, 70, 71, 76, 77, 78, 85, 96, 97, 105, 111, 112, 115, 116, 139, 140, 142, 145, 146, 148, 151, 156, 157, 160, 161, 165], "detail": [4, 5, 10, 16, 24, 25, 27, 28, 30, 31, 32, 34, 36, 38, 39, 41, 44, 47, 50, 52, 55, 58, 61, 62, 64, 65, 66, 70, 71, 75, 78, 82, 86, 91, 92, 93, 94, 96, 97, 98, 99, 100, 101, 102, 104, 114, 115, 116, 120, 125, 127, 132, 135, 140, 142, 147, 148, 151, 153, 158, 162, 165, 166, 167, 170], "content": [4, 6, 25, 37, 45, 55, 59, 77, 78, 89, 96, 151, 162, 167, 168], "routin": [4, 5, 6, 16, 18, 19, 22, 27, 29, 32, 34, 38, 39, 47, 48, 49, 50, 55, 56, 66, 71, 72, 76, 77, 78, 81, 84, 86, 89, 91, 94, 97, 100, 101, 104, 106, 107, 115, 118, 119, 120, 123, 125, 127, 128, 130, 140, 144, 148, 150, 152, 158, 164, 165, 167, 168, 170], "special": [4, 7, 16, 48, 50, 55, 65, 78, 86, 97, 115, 135, 142, 164], "depth": [4, 5, 16, 17, 18, 19, 24, 32, 34, 35, 37, 42, 47, 48, 49, 52, 68, 72, 75, 81, 83, 141, 143, 144, 151, 162], "averag": [4, 6, 15, 17, 18, 19, 34, 42, 48, 49, 52, 53, 57, 71, 72, 102, 106, 120, 132, 140, 144, 145, 162, 164, 167], "geophys": [4, 16, 17, 25, 48, 52, 78, 148], "flow": [4, 16, 17, 25, 34, 35, 48, 50, 52, 78, 96, 113, 118, 130, 135, 140, 148, 151, 162, 167], "geoclaw": [4, 7, 12, 17, 18, 19, 25, 26, 30, 31, 32, 34, 35, 36, 37, 39, 41, 44, 46, 47, 56, 57, 59, 60, 61, 62, 63, 64, 68, 70, 72, 75, 77, 78, 81, 85, 96, 105, 111, 113, 114, 116, 139, 140, 141, 143, 144, 146, 148, 149, 154, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167], "parallel": [4, 24, 25, 47, 76, 87, 93, 95, 96, 98, 101, 103, 105, 109, 115, 116, 118, 125, 149], "ten": [4, 78], "thousand": [4, 78], "core": [4, 12, 78, 116, 127, 137], "wish": [4, 13, 14, 15, 24, 31, 38, 39, 52, 55, 62, 71, 80, 81, 96, 101, 104, 105, 107, 111, 113, 115, 125, 145, 153, 156, 157, 165], "discrib": 4, "book": [4, 12, 17, 27, 31, 46, 85, 103, 140], "levequ": [4, 16, 17, 26, 32, 56, 78, 92, 94, 96, 104, 110, 140, 148, 167, 170], "fvmhp": [4, 12, 16, 17, 27, 46, 78, 140, 148, 167, 170], "virtual": [4, 13, 27, 29, 106], "were": [4, 6, 14, 19, 22, 34, 45, 47, 58, 64, 67, 71, 72, 89, 115, 118, 119, 125, 128, 132, 135, 136, 137, 142, 144, 154, 162], "4": [4, 7, 8, 9, 13, 16, 17, 20, 25, 27, 30, 32, 34, 35, 36, 39, 41, 42, 44, 45, 47, 48, 52, 55, 57, 58, 59, 66, 67, 68, 70, 71, 72, 76, 77, 81, 82, 84, 95, 96, 97, 98, 99, 101, 102, 104, 105, 109, 111, 115, 116, 118, 119, 124, 127, 132, 133, 135, 137, 139, 142, 148, 149, 150, 151, 152, 160, 161, 162, 164, 169], "3": [4, 6, 7, 15, 16, 19, 22, 24, 26, 27, 32, 34, 35, 36, 39, 41, 45, 47, 48, 55, 57, 59, 62, 63, 68, 71, 72, 75, 77, 82, 84, 85, 88, 91, 92, 94, 97, 98, 99, 102, 103, 104, 106, 110, 111, 115, 125, 127, 130, 136, 138, 140, 142, 145, 148, 149, 150, 151, 152, 160, 161, 162, 164, 167, 170], "pointer": [4, 16, 18, 19, 58, 75, 81, 84, 104, 109, 123], "code": [4, 5, 6, 7, 8, 12, 14, 16, 21, 22, 23, 24, 25, 26, 29, 31, 34, 35, 36, 37, 38, 39, 41, 43, 44, 45, 47, 48, 49, 52, 54, 56, 57, 58, 60, 65, 66, 67, 68, 74, 75, 76, 77, 78, 80, 82, 84, 85, 86, 88, 89, 94, 96, 97, 98, 99, 101, 104, 105, 108, 110, 111, 114, 117, 118, 119, 120, 123, 124, 125, 126, 127, 128, 129, 130, 132, 137, 139, 140, 141, 142, 146, 148, 149, 150, 151, 152, 153, 158, 160, 161, 162], "bibliographi": [4, 27], "paper": [4, 5, 6, 16, 19, 32, 48, 58, 92, 96], "distribut": [4, 12, 13, 31, 32, 58, 65, 75, 78, 86, 104, 110, 130], "under": [4, 7, 24, 34, 36, 40, 55, 56, 58, 61, 65, 67, 81, 86, 94, 96, 116, 125, 127, 138], "term": [4, 18, 19, 27, 48, 49, 52, 65, 75, 89, 94, 95, 104, 115, 118, 126, 127, 136, 137, 141, 148, 150, 151, 152, 156, 157], "berkelei": [4, 65, 86], "bsd": [4, 65, 86, 127], "contribut": [4, 26, 27, 61, 86, 89, 96, 101, 104, 113, 116], "its": [4, 6, 13, 18, 19, 24, 31, 34, 42, 52, 55, 65, 67, 70, 75, 77, 86, 91, 92, 93, 94, 96, 101, 103, 104, 106, 109, 115, 150, 164, 170], "incept": 4, "1994": [4, 65], "major": [4, 24, 59, 86, 89, 117, 119, 120, 121, 126, 128, 133, 136, 137], "design": [4, 29, 30, 55, 86, 88, 108, 142, 166], "made": [4, 19, 20, 24, 30, 32, 37, 62, 103, 106, 118, 119, 120, 125, 127, 130, 132, 135, 136, 137, 142, 144, 151, 159, 162, 164, 167], "individu": [4, 24, 25, 55, 63, 66, 67, 71, 94, 115, 116, 158], "randal": [4, 17, 96], "univers": [4, 17, 26, 58, 65, 86, 103], "washington": [4, 17, 26, 58, 65, 129, 142, 164], "rjlevequ": [4, 19, 30, 31], "marsha": [4, 6, 17], "berger": [4, 6, 17], "courant": [4, 6, 49, 115, 126, 148, 149, 150, 152], "institut": 4, "nyu": 4, "mjberger": 4, "jan": [4, 59], "olav": 4, "langseth": [4, 17], "norwegian": 4, "defenc": 4, "research": [4, 17, 48, 52, 86, 104, 114], "establish": 4, "david": [4, 17, 86, 96, 104], "georg": [4, 17, 32], "usg": [4, 32, 166], "cascad": 4, "volcano": 4, "observatori": 4, "dlgeorg": 4, "ketcheson": [4, 17, 79, 86, 96, 104], "kaust": [4, 26], "ketch": 4, "kyle": [4, 17, 86, 92, 96, 97, 102], "mandli": [4, 17, 86, 92, 96, 97, 102], "ut": 4, "austin": 4, "contributor": [4, 26, 65, 96], "aron": [4, 17, 86, 96], "ahmadia": [4, 17, 86, 96], "amal": [4, 17, 86, 96], "alghamdi": [4, 17, 86, 96], "ghamdi": 4, "ian": 4, "bollig": 4, "bolliger32": 4, "peter": 4, "blossei": 4, "donna": [4, 17], "calhoun": [4, 17, 55], "donnabois": 4, "ond\u0159ej": 4, "\u010dert\u00edk": 4, "certik": [4, 86], "brisa": 4, "davi": [4, 17], "brisadavi": [4, 128], "gradi": [4, 17, 86], "lemoin": [4, 17, 86], "gradylemoin": 4, "sorin": 4, "mitran": [4, 17], "matteo": [4, 17, 86, 96], "parsani": [4, 17, 86, 96], "mparsani": 4, "xinsheng": [4, 56], "qin": [4, 56], "xinshengqin": [4, 56], "avi": 4, "schwarzschild": 4, "aks2203": 4, "andi": 4, "terrel": 4, "aterrel": 4, "chri": 4, "vogl": 4, "cjvogl": 4, "numer": [4, 17, 55, 110, 128], "student": 4, "toward": [4, 32], "bug": [4, 8, 12, 24, 26, 44, 55, 68, 76, 82, 86, 118, 122, 123, 124, 125, 127, 132, 133, 134, 137], "suggest": [4, 18, 19, 26, 31, 51, 57, 58, 60, 62, 84, 85, 110, 138, 140, 151, 169], "improv": [4, 13, 24, 26, 34, 36, 55, 58, 97, 110, 118, 119, 120, 122, 123, 124, 125, 126, 128, 129, 130, 131, 132, 133, 148], "explor": [4, 36, 63, 82, 84], "thank": [4, 96], "pleas": [4, 26, 30, 58, 60, 61, 62, 86, 88, 91, 93, 96, 97, 99, 101, 103, 104, 105, 107, 113, 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126, 128, 132, 133, 134, 135, 136, 137, 164], "doi": [4, 17, 56, 59, 61, 118, 130, 131, 132, 133, 134, 135, 136, 137, 138], "10": [4, 17, 18, 19, 30, 32, 34, 36, 42, 49, 55, 56, 57, 59, 82, 88, 91, 94, 115, 124, 125, 127, 130, 131, 132, 133, 134, 135, 136, 137, 138, 142, 148, 149, 150, 152, 154, 162], "5281": [4, 59, 118, 130, 131, 132, 133, 134, 135, 136, 137, 138], "zenodo": [4, 61, 118, 130, 131, 132, 133, 134, 135, 136, 137, 138], "4025432": [4, 131, 138], "here": [4, 13, 16, 18, 19, 31, 36, 41, 42, 52, 59, 62, 63, 70, 78, 82, 84, 88, 91, 96, 97, 99, 101, 102, 107, 108, 111, 113, 115, 123, 140, 141, 142, 159, 164, 170], "bibtex": [4, 59], "misc": [4, 129, 131], "url": [4, 12, 17, 55, 59, 127, 128, 162, 164], "year": [4, 17, 24, 55, 63, 96, 117, 128, 158], "releas": [4, 19, 20, 24, 27, 30, 31, 46, 49, 55, 60, 61, 62, 90, 96, 97, 104, 105, 110], "refer": [4, 5, 19, 22, 32, 34, 35, 36, 38, 39, 41, 48, 50, 55, 59, 66, 67, 71, 75, 88, 92, 94, 97, 98, 102, 104, 106, 111, 113, 127, 129, 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107, 111, 115, 116, 118, 127, 130, 140, 142, 146, 151, 153, 156, 157, 162, 164, 167], "num_output_tim": [5, 77, 88, 91, 98, 139, 148, 150, 152], "larg": [5, 6, 12, 19, 22, 36, 37, 38, 39, 42, 52, 55, 57, 58, 71, 76, 81, 96, 98, 99, 115, 116, 118, 124, 132, 135, 139, 142, 144, 148, 149, 164, 166], "frequent": [5, 22, 29, 36, 47, 64, 107, 124, 135], "enough": [5, 47, 49, 58, 64, 70, 149, 159, 161, 162], "them": [5, 13, 20, 24, 30, 31, 32, 34, 47, 51, 55, 58, 71, 78, 86, 88, 93, 97, 98, 99, 101, 109, 113, 116, 118, 120, 129, 135, 136, 137, 142, 155, 158, 164, 167], "reason": [5, 19, 49, 52, 55, 63, 75, 76, 78, 99, 101, 115, 148], "output_format": [5, 36, 37, 77, 91, 98, 135, 148, 150, 152], "binari": [5, 36, 44, 47, 59, 65, 86, 98, 100, 124, 135, 136, 139, 148, 164, 168], "manner": [5, 36, 42, 47, 55, 64, 70, 75, 81, 127, 144, 148, 156, 157, 162], "attribut": [5, 7, 18, 24, 32, 36, 37, 41, 47, 70, 75, 81, 83, 84, 88, 91, 94, 97, 99, 101, 103, 104, 115, 118, 119, 124, 128, 136, 139, 147, 148, 149, 151, 158, 164], "clawutil": [5, 11, 14, 21, 22, 25, 30, 43, 44, 54, 59, 60, 61, 66, 111, 116, 146, 148, 149, 150, 152, 164, 165], "clawrundata": [5, 47, 63, 128, 139, 148, 149, 150, 152], "adjointdata": [5, 128, 129], "ia": 5, "attribur": 5, "toler": [5, 34, 102, 109, 115, 116, 125, 149, 150, 151], "rundata": [5, 18, 19, 24, 34, 36, 41, 42, 47, 49, 63, 64, 115, 119, 130, 137, 139, 144, 148, 149, 150, 151, 152, 154], "use_adjoint": 5, "adjoint_outdir": 5, "abspath": [5, 41], "_output": [5, 13, 14, 34, 36, 38, 39, 47, 54, 64, 71, 82, 84, 93, 98, 100, 103, 124, 131, 165], "period": [5, 6, 16, 34, 66, 88, 101, 115, 118, 148, 150, 152], "t1": [5, 41, 47, 63, 64, 115, 132, 149, 150, 151], "t0": [5, 18, 19, 77, 139, 148, 150, 151, 152, 162], "t2": [5, 41, 47, 63, 64, 115, 132, 149, 150, 151], "addit": [5, 7, 13, 16, 17, 19, 25, 26, 30, 31, 34, 36, 39, 40, 41, 48, 49, 50, 63, 70, 75, 77, 78, 82, 83, 89, 92, 94, 96, 98, 104, 105, 106, 113, 115, 118, 123, 125, 126, 127, 128, 131, 132, 134, 135, 136, 140, 142, 148, 152, 158, 161, 162, 167, 168], "aux": [5, 6, 15, 22, 24, 29, 47, 57, 89, 96, 97, 98, 101, 103, 104, 106, 107, 119, 120, 125, 127, 140, 141, 145, 148, 149, 150, 151, 152, 167], "inner": [5, 115, 128], "product": [5, 32, 65, 86, 109, 115, 128], "amrdata": [5, 24, 34, 115, 130, 132, 149, 150, 151], "aux_typ": [5, 149, 150], "append": [5, 22, 34, 36, 41, 42, 47, 55, 64, 82, 91, 103, 115, 124, 125, 137, 139, 140, 150, 151], "num_aux": [5, 89, 97, 99, 101, 102, 106, 140, 148, 149, 150, 152, 167], "len": [5, 32, 37, 94, 150, 152, 164], "innerprod_index": 5, "base": [5, 6, 13, 19, 22, 23, 24, 30, 31, 32, 34, 35, 36, 48, 49, 51, 55, 56, 57, 58, 63, 64, 67, 68, 70, 71, 75, 78, 89, 91, 92, 94, 96, 97, 102, 103, 104, 106, 108, 109, 115, 117, 123, 126, 128, 132, 135, 136, 143, 148, 149, 150, 151, 152, 158, 164, 167, 170], "richardson": [5, 7, 24, 149, 150], "error": [5, 16, 22, 38, 39, 43, 55, 62, 71, 76, 82, 91, 96, 97, 98, 109, 115, 116, 128, 132, 137, 149, 150, 158, 165], "estimat": [5, 150], "flag_richardson": [5, 115, 124, 149, 150], "flag_richardson_tol": [5, 115, 149, 150], "1e": [5, 70, 152], "flag2refin": [5, 7, 24, 149, 150], "flag2refine_tol": [5, 115, 149, 150], "01": [5, 17, 42, 77, 94, 164], "we": [5, 6, 18, 19, 24, 26, 28, 34, 38, 39, 41, 42, 47, 52, 55, 57, 58, 59, 60, 62, 67, 70, 72, 75, 81, 84, 88, 89, 90, 91, 93, 94, 97, 98, 99, 100, 101, 104, 105, 106, 107, 108, 109, 110, 113, 116, 127, 130, 135, 137, 140, 141, 142, 164], "attempt": [5, 8, 11, 22, 35, 38, 39, 66, 97, 103, 109, 116, 119, 133, 158, 164, 165], "estim": [5, 68, 115, 149, 151], "step": [5, 6, 10, 16, 18, 19, 21, 30, 34, 36, 38, 39, 40, 47, 55, 58, 59, 64, 71, 77, 78, 81, 84, 86, 87, 88, 89, 91, 98, 101, 104, 106, 108, 113, 115, 118, 119, 124, 125, 135, 139, 140, 146, 148, 149, 150, 151, 152, 162, 170], "extrapol": [5, 7, 16, 24, 72, 101, 108, 127, 148, 149, 150, 152], "togeth": [5, 16, 30, 31, 32, 58, 60, 75, 115, 135], "experiment": [5, 86], "simpli": [5, 13, 19, 36, 38, 39, 40, 42, 47, 49, 55, 57, 66, 67, 70, 72, 88, 90, 91, 93, 98, 99, 105, 116, 118, 140, 142, 153, 158, 164, 167, 168], "magnitud": [5, 32, 115, 127, 151], "greater": [5, 34, 63, 68, 70, 105, 115, 139, 148, 149, 151], "model": [5, 12, 16, 17, 18, 19, 26, 27, 32, 34, 44, 48, 49, 50, 56, 57, 68, 98, 115, 124, 129, 130, 131, 142, 143, 144, 151, 154, 158, 159, 162], "davisleveque2016": [5, 17], "chile2010_adjoint": 5, "shallow": [5, 15, 16, 17, 18, 19, 27, 34, 36, 42, 48, 49, 52, 56, 70, 78, 89, 96, 112, 118, 120, 121, 123, 125, 127, 128, 136, 137, 140, 144, 145, 151, 156, 157, 162, 167], "water": [5, 16, 17, 18, 19, 27, 36, 42, 47, 48, 49, 50, 51, 52, 63, 70, 78, 81, 89, 96, 118, 120, 121, 125, 127, 128, 137, 140, 142, 143, 144, 151, 162, 164, 166, 167], "while": [5, 13, 16, 19, 32, 42, 55, 71, 75, 82, 84, 89, 94, 98, 99, 104, 109, 127, 140, 144, 151, 166], "suitabl": [5, 8, 16, 18, 19, 22, 48, 52, 55, 73, 77, 103, 114, 140, 143, 158, 164], "To": [5, 6, 13, 14, 18, 19, 20, 24, 27, 30, 31, 38, 39, 40, 41, 42, 43, 47, 50, 53, 55, 56, 59, 66, 69, 70, 71, 75, 76, 77, 82, 84, 85, 88, 90, 92, 93, 96, 97, 98, 99, 100, 101, 104, 105, 108, 111, 113, 114, 115, 116, 118, 123, 125, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 139, 143, 146, 148, 149, 153, 162, 168], "date": [5, 17, 30, 43, 51, 55, 58, 59, 66, 82, 158, 165], "across": [5, 115, 125, 162, 164], "ocean": [5, 16, 17, 19, 34, 49, 52, 55, 113, 115, 142, 151, 156, 157, 162], "wai": [5, 6, 13, 16, 19, 28, 30, 36, 38, 39, 41, 42, 47, 49, 55, 57, 58, 61, 62, 63, 65, 66, 82, 84, 85, 86, 88, 91, 93, 94, 99, 101, 103, 105, 108, 110, 111, 113, 114, 119, 125, 126, 127, 130, 137, 138, 140, 142, 147, 148, 155, 159, 162, 167, 169, 170], "target": [5, 62, 82, 89, 101, 130], "possibli": [5, 32, 36, 70, 88, 94, 111, 118, 124, 144], "deep": [5, 49, 70], "amplitud": [5, 125], "compar": [5, 18, 19, 24, 39, 47, 49, 52, 55, 59, 82, 98, 115, 116, 143, 149, 160, 166, 170], "essenti": [5, 57, 71, 104, 151, 162], "rest": [5, 24, 84, 113, 127, 143, 156, 157, 162, 164], "henc": [5, 36, 57, 58, 67, 72, 104, 110, 111, 115, 144], "take": [5, 6, 24, 29, 30, 32, 34, 37, 51, 58, 68, 70, 71, 75, 82, 88, 94, 101, 104, 108, 109, 110, 115, 116, 118, 122, 128, 136, 144, 148, 149, 150, 151, 164, 167, 170], "rpn2_geoclaw_adjoint_qwav": 5, "rpt2_geoclaw_adjoint_qwav": 5, "non": [5, 16, 59, 70, 78, 89, 101, 108, 128, 130, 148, 150, 152, 158, 170], "vector": [5, 24, 88, 92, 98, 106, 127, 135, 140, 141], "split": [5, 6, 76, 94, 97, 104, 123, 124, 132, 148, 149, 150, 152, 161, 167, 170], "flux": [5, 17, 34, 36, 37, 94, 102, 104, 140, 148, 170], "comment": [5, 11, 19, 26, 53, 59, 126, 135, 139], "rpn2": [5, 140], "basic": [6, 10, 12, 27, 32, 38, 40, 48, 61, 70, 71, 88, 94, 96, 97, 98, 102, 104, 116, 140, 141, 158, 170], "strategi": 6, "logic": [6, 16, 17, 34, 132, 151], "rectangular": [6, 7, 16, 17, 32, 34, 37, 41, 42, 48, 50, 63, 70, 94, 115, 127, 130, 135, 149, 151, 162], "too": [6, 19, 51, 55, 58, 59, 118, 124, 142, 150, 152, 154], "portion": [6, 36, 42, 55, 70, 89, 135, 161], "factor": [6, 55, 149, 151, 161, 164], "direct": [6, 8, 16, 24, 32, 34, 36, 38, 39, 47, 49, 51, 55, 59, 63, 65, 66, 71, 75, 76, 82, 86, 91, 101, 108, 115, 126, 140, 148, 149, 151, 164], "anisotrop": [6, 24], "perhap": [6, 12, 19, 34, 42, 47, 58, 82, 106, 109, 115, 142], "section": [6, 13, 16, 36, 38, 39, 42, 44, 49, 50, 52, 58, 59, 67, 71, 81, 84, 96, 116, 132, 139, 148, 151, 164], "cfl": [6, 49, 94, 98, 104, 108, 118, 119, 124, 148, 150, 151, 152], "spatial": [6, 17, 27, 32, 36, 37, 41, 42, 47, 48, 49, 64, 68, 72, 101, 115, 119, 123, 130, 132, 140, 143, 149, 150, 151, 152, 170], "reduc": [6, 16, 36, 42, 49, 55, 118, 124, 126, 135, 170], "thu": [6, 51, 98, 101, 127, 158], "proce": [6, 18, 19, 30, 151], "advanc": [6, 17, 36, 56, 70, 76, 108, 124, 136, 148, 149, 167], "taken": [6, 34, 70, 75, 98, 104, 115, 148, 167], "around": [6, 32, 34, 42, 63, 97, 113, 116, 130, 149, 150, 158, 164, 167], "librari": [6, 13, 15, 16, 18, 19, 22, 24, 27, 29, 30, 34, 36, 38, 39, 44, 47, 49, 56, 63, 66, 76, 77, 78, 86, 92, 97, 99, 104, 109, 111, 112, 115, 125, 130, 144, 145, 149, 156, 157, 165, 167], "bcnamr": [6, 16, 127, 148, 150, 167], "check": [6, 14, 15, 16, 22, 34, 38, 39, 43, 44, 54, 55, 56, 58, 59, 60, 62, 66, 71, 82, 85, 88, 89, 91, 96, 99, 103, 104, 106, 108, 109, 111, 112, 115, 120, 129, 142, 144, 145, 149, 150, 156, 157, 158, 164, 165, 166, 167], "denot": [6, 19, 24, 37, 47, 57, 140, 164], "procedur": [6, 16, 42, 48, 49, 59, 167], "updat": [6, 12, 13, 24, 25, 27, 34, 53, 56, 61, 62, 64, 84, 96, 104, 106, 107, 110, 113, 118, 119, 123, 125, 126, 127, 128, 129, 130, 140, 149, 150, 152, 155, 158, 161, 167], "consist": [6, 27, 34, 36, 51, 55, 59, 63, 99, 110, 125, 135, 136, 140, 142, 151, 162, 167], "replac": [6, 13, 31, 36, 41, 47, 52, 56, 58, 59, 61, 64, 66, 81, 89, 93, 97, 99, 100, 101, 102, 106, 109, 116, 118, 119, 125, 127, 129, 130, 135, 139, 140, 144, 164, 165], "ly": [6, 70], "within": [6, 16, 30, 36, 37, 58, 62, 70, 72, 78, 82, 100, 109, 111, 115, 140, 142, 147, 153, 164], "approxim": [6, 16, 18, 19, 27, 35, 52, 55, 72, 75, 140], "lead": [6, 13, 24, 34, 36, 52, 55, 68, 71, 75, 111, 114, 132, 144, 149], "total": [6, 32, 36, 55, 75, 77, 98, 104, 148, 149, 150, 152, 161], "mass": [6, 98, 118, 154], "restor": 6, "global": [6, 14, 94, 106, 109, 118, 143, 162, 166, 167], "fix": [6, 21, 22, 24, 27, 35, 37, 41, 47, 48, 49, 58, 59, 63, 64, 66, 70, 72, 86, 97, 102, 118, 119, 120, 121, 122, 123, 124, 125, 126, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 141, 148, 150, 152, 164], "up": [6, 13, 19, 24, 30, 31, 32, 34, 36, 38, 39, 42, 43, 47, 48, 55, 58, 59, 63, 66, 70, 71, 75, 77, 82, 88, 89, 91, 93, 95, 96, 97, 99, 104, 105, 108, 111, 113, 115, 116, 118, 123, 124, 127, 130, 132, 137, 142, 144, 147, 150, 152, 161, 162, 165, 166], "style": [6, 24, 30, 32, 36, 41, 53, 55, 70, 73, 82, 86, 91, 127, 151], "olig": [6, 17], "colella": [6, 17], "bergeroliger84": [6, 17], "bergercolella89": [6, 17], "fortran": [6, 9, 11, 13, 14, 19, 22, 25, 29, 30, 32, 34, 35, 36, 37, 38, 47, 48, 50, 57, 60, 62, 66, 67, 68, 72, 76, 77, 78, 81, 84, 86, 88, 89, 91, 94, 96, 97, 99, 101, 102, 104, 105, 106, 109, 111, 118, 123, 124, 125, 127, 128, 129, 135, 136, 140, 141, 146, 149, 150, 151, 152, 158, 160, 161, 162], "written": [6, 11, 27, 32, 34, 36, 37, 43, 47, 62, 63, 64, 65, 75, 77, 78, 82, 86, 95, 96, 97, 101, 125, 140, 148, 149, 150, 151, 152, 158, 164, 167], "ga": [6, 102], "dynam": [6, 22, 32, 36, 52, 75, 78, 149], "merg": [6, 13, 27, 30, 56, 58, 59, 62, 123], "earli": [6, 22, 144], "mjb": [6, 17], "rjl": [6, 17, 111, 129], "fulli": [6, 52, 55, 56, 126, 130, 140, 151, 158, 159], "consid": [6, 42, 52, 62, 70, 89, 111, 146, 153, 164], "adjac": [6, 16, 34, 48, 115, 144, 148], "equival": [6, 47, 56, 57, 63, 64, 77, 129, 135, 162], "copi": [6, 14, 15, 16, 19, 38, 39, 47, 55, 58, 59, 62, 71, 88, 91, 101, 106, 112, 113, 114, 115, 120, 124, 127, 131, 144, 145, 149, 153, 156, 157, 162, 167], "interior": [6, 16, 42, 77, 106], "howev": [6, 13, 16, 18, 19, 24, 34, 38, 39, 42, 44, 49, 50, 52, 55, 62, 65, 67, 70, 72, 75, 76, 77, 86, 89, 96, 115, 116, 125, 127, 129, 143, 144, 147, 151, 161], "lie": [6, 34, 35, 37, 70, 72, 115, 130, 142], "outsid": [6, 16, 41, 63, 70, 130, 142, 144, 162, 164], "li": [6, 16, 34, 37, 72, 115, 142], "along": [6, 14, 16, 19, 26, 29, 32, 34, 42, 47, 55, 58, 61, 75, 77, 111, 115, 118, 123, 138, 139, 142, 144, 151, 166], "unless": [6, 34, 43, 44, 63, 102, 110, 143, 148, 149, 164], "standard": [6, 16, 19, 32, 34, 36, 49, 55, 57, 71, 77, 89, 92, 104, 111, 115, 116, 150, 151, 152, 153, 162, 167, 170], "beyond": [6, 32, 110, 127], "modifi": [6, 9, 14, 15, 16, 18, 19, 22, 24, 29, 34, 38, 39, 42, 47, 48, 58, 59, 62, 64, 66, 71, 74, 82, 89, 92, 94, 96, 101, 111, 112, 113, 114, 115, 122, 124, 125, 126, 127, 132, 142, 144, 145, 148, 150, 151, 152, 156, 157, 162, 164, 167], "damag": [6, 65, 86], "bcn": [6, 16, 152, 167], "nd": [6, 16, 115, 127, 130, 167], "actual": [6, 29, 32, 36, 57, 62, 63, 71, 75, 82, 92, 97, 109, 113, 143, 151], "softwar": [6, 13, 26, 27, 31, 48, 52, 65, 86, 96, 97, 98, 153, 162], "With": [6, 24, 30, 47, 51, 53, 55, 62, 70, 78, 115, 124, 140, 142, 148], "opposit": [6, 16, 97], "side": [6, 16, 19, 20, 34, 55, 58, 68, 75, 97, 116, 118, 135, 136, 137, 140, 170], "everi": [6, 12, 30, 34, 36, 47, 64, 66, 67, 77, 88, 91, 93, 97, 98, 106, 115, 116, 118, 125, 126, 140, 144, 146, 148, 150, 152, 158, 162, 164, 167], "few": [6, 12, 13, 19, 24, 28, 30, 31, 39, 49, 52, 58, 70, 71, 89, 104, 108, 110, 115, 116, 130, 143, 160, 162, 167], "coarsest": [6, 19, 36, 55, 77, 119, 139, 148], "revis": [6, 125], "shock": [6, 17, 52, 104, 115], "accord": [6, 57, 97], "criteria": [6, 7, 24, 27, 34, 70, 106], "cluster": [6, 17, 115, 149, 150], "rigoutsi": 6, "bergerrigoutsis91": [6, 17], "nonoverlap": 6, "rectangl": [6, 7, 27, 32, 36, 70, 75, 115, 130, 164], "balanc": [6, 17, 78, 126, 141, 156, 157], "conflict": [6, 30, 62, 66, 71, 107, 111], "goal": 6, "possibl": [6, 13, 24, 28, 30, 32, 34, 36, 37, 47, 49, 51, 52, 55, 64, 65, 66, 75, 82, 86, 94, 97, 99, 100, 104, 109, 111, 115, 140, 142, 143, 148, 149, 162, 166, 167], "minim": [6, 62, 70, 97, 142, 149, 164], "overhead": [6, 76, 115, 161], "cutoff": [6, 150], "control": [6, 7, 25, 27, 34, 36, 44, 47, 58, 62, 64, 71, 77, 84, 87, 92, 94, 96, 97, 98, 99, 101, 115, 125, 130, 141, 151], "fraction": [6, 13, 32, 115, 148, 167, 170], "70": [6, 36, 55], "realli": [6, 72, 116, 167], "At": [6, 13, 29, 30, 36, 38, 39, 42, 70, 99, 104, 108, 110, 115, 130, 148], "present": [6, 26, 63, 72, 94, 97, 102, 103, 104, 109, 153, 154, 167, 170], "previous": [6, 24, 34, 70, 77, 84, 118, 123, 130, 144], "bilinear": [6, 34, 42, 47, 57, 72, 119, 120, 162], "doxygen": [6, 7, 27, 126], "flowchart": [6, 7, 27], "capabl": [7, 12, 19, 24, 34, 36, 47, 52, 56, 64, 70, 78, 89, 96, 119, 124, 125, 127, 128, 129, 130, 131, 135, 136, 164, 166], "block": [7, 32, 35, 42, 63, 75, 77, 78, 88, 97, 106, 109, 116, 167], "structur": [7, 10, 24, 34, 36, 37, 41, 59, 62, 66, 78, 103, 104, 125, 142, 147, 164], "input": [7, 14, 16, 22, 25, 27, 29, 32, 35, 37, 43, 48, 55, 63, 67, 70, 71, 77, 88, 91, 92, 94, 96, 102, 103, 104, 109, 113, 124, 127, 128, 129, 140, 150, 151, 152, 158, 159, 162, 164, 167], "indic": [7, 16, 19, 22, 24, 27, 31, 32, 34, 36, 41, 42, 44, 47, 48, 55, 57, 59, 62, 67, 71, 72, 80, 84, 94, 98, 99, 102, 104, 108, 111, 115, 116, 125, 130, 132, 140, 141, 148, 149, 150, 151, 152, 154, 162, 164, 167], "tool": [7, 8, 17, 24, 25, 30, 32, 34, 35, 36, 37, 38, 39, 42, 48, 49, 50, 51, 52, 55, 57, 60, 61, 62, 63, 71, 75, 80, 81, 82, 83, 85, 96, 111, 114, 120, 121, 125, 126, 130, 131, 151, 153, 162, 164, 166, 168], "matlab": [7, 24, 27, 38, 39, 80, 81, 82, 100, 110, 118, 127, 130, 131], "deprec": [7, 32, 48, 58, 62, 118, 123, 127, 135, 137, 162, 164], "debug": [7, 18, 44, 66, 77, 81, 98, 106, 111, 116, 135, 148, 150], "flag": [7, 12, 13, 18, 24, 27, 30, 31, 41, 43, 44, 48, 56, 62, 76, 89, 107, 109, 111, 118, 123, 128, 132, 150, 151], "sampl": [7, 8, 14, 17, 18, 27, 31, 36, 44, 47, 48, 51, 55, 64, 75, 111, 116, 135, 139, 142, 148, 149, 162, 164, 167], "ghost": [7, 16, 19, 76, 77, 94, 97, 104, 106, 125, 132, 136, 148, 150, 152, 161, 167, 170], "flagregion": [7, 27, 70, 115, 130, 132, 142, 149, 151], "rule": [7, 13, 27, 63, 70, 89], "convex": [7, 34], "slu": 7, "bounding_box": [7, 35], "mask_outsid": [7, 70], "write": [7, 30, 32, 35, 36, 37, 41, 42, 47, 48, 54, 57, 58, 68, 75, 77, 78, 81, 88, 91, 94, 95, 97, 98, 99, 103, 118, 125, 127, 150, 152, 158, 162, 164], "instanti": [7, 91, 99, 101, 104, 106, 136, 150, 152], "make_kml": 7, "simpl": [7, 31, 38, 39, 41, 48, 59, 72, 75, 89, 96, 101, 102, 104, 109, 114, 116, 164], "select": [7, 12, 13, 15, 16, 30, 34, 42, 70, 97, 98, 104, 112, 115, 119, 126, 130, 138, 145, 148, 151, 156, 157, 166], "continent": [7, 70], "shelf": [7, 70], "guid": [7, 13, 17, 20, 25, 26, 27, 48, 50, 56, 61, 96, 110, 115, 118, 126, 130, 135, 136, 137, 155], "adjoint": [7, 17, 27, 56, 115, 127, 128], "gaug": [7, 27, 34, 36, 48, 49, 63, 72, 94, 95, 106, 113, 119, 123, 124, 125, 126, 127, 130, 135, 139, 143, 147, 150], "extend": [8, 16, 24, 42, 63, 70, 71, 94, 127, 142, 144, 151, 162, 164, 170], "directli": [8, 18, 19, 21, 25, 34, 48, 52, 61, 71, 75, 82, 84, 88, 89, 92, 96, 106, 109, 111, 127, 135, 164, 168], "obviou": [8, 55], "elimin": [8, 24, 70, 89, 111, 127, 151], "gallery_classic_amrclaw": 8, "num_cel": [8, 24, 49, 94, 140, 148, 149, 150, 152], "refinement_ratios_i": [8, 149, 150], "sweep": [8, 140], "transvers": [8, 94, 125, 132, 140, 141, 148, 167, 170], "graph": 9, "understand": [9, 27, 38, 39, 52, 81, 96, 108, 115, 140], "filpatch": [9, 42, 125, 129, 132], "idea": [10, 26, 32, 70, 71, 78, 88, 108, 120, 164, 170], "overal": [10, 88], "who": [10, 12, 21, 24, 26, 34, 44, 52, 60, 118], "gori": 10, "monster": 10, "column": [10, 32, 34, 47, 49, 52, 64, 98, 102, 123, 142, 164], "markup": 11, "languag": [11, 81, 109], "restructur": [11, 58], "text": [11, 58, 59, 63, 77, 91, 97, 104, 123], "sphinx": [11, 25, 27, 59, 126], "covert": 11, "convert_readm": 11, "brows": [11, 26, 45, 55, 71, 153, 167], "insert": [11, 16, 75, 97, 118, 146], "script": [11, 21, 22, 30, 32, 34, 36, 43, 47, 55, 58, 66, 71, 78, 81, 86, 89, 93, 95, 96, 98, 99, 104, 109, 111, 116, 127, 131, 140, 147, 151, 152, 164], "invok": [11, 14, 19, 76, 144, 165], "minor": [11, 19, 55, 58, 98, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 130, 132, 134, 136, 137], "syntax": [11, 61, 146], "highlight": [11, 13], "header": [11, 32, 34, 36, 42, 47, 57, 70, 75, 77, 97, 103, 123, 125, 127, 158, 162, 164], "complex": [12, 19, 36, 41, 94], "archiv": [12, 23, 39, 55, 59, 116, 153, 160, 164, 166], "github": [12, 15, 19, 24, 25, 26, 27, 28, 31, 56, 58, 61, 62, 93, 101, 105, 112, 116, 118, 122, 124, 125, 126, 135, 138, 140, 141, 145, 156, 157, 165], "app": [12, 13, 20, 25, 28, 30, 31, 40, 45, 46, 75, 113, 114, 118, 122, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 141], "com": [12, 13, 19, 25, 26, 28, 30, 31, 51, 56, 58, 59, 61, 62, 97, 99, 101, 105, 122, 124, 125, 126, 135, 138, 141], "fvmbook": [12, 17, 45, 46], "galleri": [12, 17, 27, 34, 36, 38, 39, 40, 45, 48, 49, 59, 80, 81, 93, 96, 110, 116, 122, 126, 153, 160, 167], "anim": [12, 16, 36, 45, 49, 55, 123, 130, 131, 135, 153], "instal": [12, 13, 19, 20, 25, 27, 31, 38, 46, 55, 58, 59, 84, 86, 87, 90, 95, 97, 108, 110, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 146, 169], "collect": [12, 27, 28, 30, 32, 34, 75, 81, 88, 104, 153], "either": [12, 16, 19, 22, 32, 34, 36, 42, 48, 50, 55, 64, 66, 70, 71, 75, 77, 82, 84, 88, 94, 96, 97, 98, 104, 109, 111, 115, 116, 123, 124, 125, 127, 135, 140, 142, 144, 149, 151, 158, 162, 164, 167, 170], "clone": [12, 20, 25, 26, 45, 56, 58, 59, 62, 85, 99, 105, 114, 118, 135, 136, 137, 165], "git": [12, 13, 25, 26, 27, 28, 56, 59, 62, 96, 105, 116, 129], "navig": [12, 31, 58, 153], "green": [12, 18, 19, 63, 70, 75, 82, 116, 164], "button": [12, 13, 30, 55, 63, 126], "download": [12, 13, 30, 31, 32, 39, 40, 42, 48, 55, 59, 61, 62, 93, 99, 105, 127, 128, 138, 160, 164, 165, 166], "zip": [12, 55, 59], "illustr": [12, 27, 32, 34, 38, 46, 48, 49, 55, 70, 71, 75, 77, 114, 122, 123, 127, 129, 140, 142, 153, 154, 164], "variou": [12, 19, 22, 24, 32, 36, 41, 46, 52, 58, 71, 72, 75, 82, 84, 94, 108, 110, 111, 115, 125, 140, 147, 151, 154, 158], "visibl": [12, 13, 46, 55, 114, 153], "render": [12, 24, 34, 46, 55, 63, 168], "advantag": [12, 19, 36, 47, 64, 81, 97, 110, 116, 142], "independ": [12, 25, 32, 36, 37], "contact": [12, 93, 96, 105], "u": [12, 13, 16, 26, 31, 34, 36, 37, 51, 52, 59, 60, 62, 64, 86, 93, 96, 102, 105, 106, 107, 108, 113, 126, 140, 149, 152, 158, 166], "storm": [12, 17, 26, 27, 48, 123, 126, 127, 128, 129, 131, 132, 133], "surg": [12, 17, 26, 27, 48, 123, 126, 127, 128, 129, 132, 158], "empti": [12, 36, 47, 103, 106, 109, 111, 118, 148, 151, 158, 164], "gitmodul": 12, "pull": [12, 26, 28, 31, 58, 59, 61, 93, 101, 116, 122, 125, 126, 132, 135, 140], "request": [12, 26, 28, 32, 36, 37, 47, 58, 61, 77, 88, 93, 94, 98, 101, 103, 116, 118, 125, 127, 132, 140, 151, 158, 164], "init": [12, 27, 30, 42, 48, 56, 59, 61, 143, 151], "leav": [12, 13, 16, 47, 62, 149, 164], "off": [12, 13, 47, 52, 55, 63, 71, 84, 91, 98, 115, 135, 149, 164], "won": [12, 13, 70, 89, 164], "hurt": [12, 67], "maintain": [12, 30, 110, 127, 149, 162, 167], "flavor": [12, 23, 97], "demonstr": [12, 27, 93, 99], "agre": [12, 30, 42, 57, 140, 161, 164, 167], "seen": [12, 24, 34, 38, 39, 40, 52, 76, 101, 148, 153], "cloud": 13, "elast": [13, 75], "sign": [13, 26, 82, 132, 158], "account": [13, 26, 30, 59, 90, 99, 139], "750": 13, "free": [13, 55, 66, 75, 86, 90, 101, 105, 107], "micro": 13, "suffici": [13, 16, 18, 19, 22, 36, 47, 75, 76, 77, 113, 119, 135, 148, 151], "tier": 13, "inform": [13, 14, 24, 27, 34, 35, 37, 38, 39, 49, 50, 51, 52, 53, 54, 62, 67, 77, 82, 83, 84, 88, 89, 94, 96, 98, 99, 100, 102, 103, 109, 111, 124, 127, 128, 130, 136, 138, 139, 140, 143, 146, 148, 149, 151, 158, 161, 162, 165, 166, 167, 168], "uw": [13, 26], "escienc": 13, "aw": 13, "tutori": [13, 31, 59, 84, 87, 91, 96, 105, 111, 114], "gear": 13, "faq": [13, 27, 81], "price": 13, "charg": 13, "per": [13, 32, 37, 47, 49, 55, 63, 71, 76, 97, 149], "thereof": 13, "regardless": [13, 37, 42, 70, 115, 148], "cpu": [13, 56, 124, 127, 129, 161], "consol": [13, 98, 151], "tab": [13, 58, 138], "east": [13, 162], "cheaper": 13, "rate": 13, "menu": [13, 20, 27, 58, 63, 118, 126, 135, 136, 137, 138, 143, 166], "imag": [13, 38, 39, 42, 59, 63, 70, 116, 127, 142], "platform": [13, 55, 91, 99, 110, 116], "finish": [13, 82, 88], "load": [13, 63, 98, 100, 103, 109, 116, 164, 168], "databas": [13, 32, 75, 109, 113, 127, 162], "uwamath": 13, "bar": [13, 58, 158], "screen": [13, 30, 55, 63, 91, 98, 99, 124, 150, 152], "shapshot": 13, "machin": [13, 27, 76, 78, 116, 125, 146], "disk": [13, 47, 88, 97, 98, 116, 125], "ubuntu": 13, "linux": [13, 74, 85, 107, 116, 146], "popup": 13, "look": [13, 14, 24, 27, 30, 32, 42, 55, 58, 59, 63, 71, 82, 84, 89, 94, 99, 103, 104, 108, 109, 111, 116, 120, 127, 136, 142, 148, 149, 151, 161, 164, 165], "sort": [13, 42, 127, 147, 165], "larger": [13, 22, 34, 49, 55, 63, 75, 76, 77, 82, 94, 119, 125, 132, 149, 151, 162], "cost": [13, 104], "continu": [13, 24, 30, 32, 51, 53, 58, 86, 110, 118, 140, 148, 170], "eventu": [13, 48, 130], "don": [13, 29, 30, 58, 59, 82, 97, 98, 99, 105, 116, 150, 165], "pair": [13, 51, 97, 116, 164], "secur": 13, "quick": [13, 27, 39, 48, 50, 60, 85, 116, 160], "close": [13, 42, 55, 58, 63, 70, 71, 97, 115, 118, 130, 149, 158], "back": [13, 29, 31, 58, 59, 126], "statu": [13, 30, 54, 91, 108], "wait": 13, "until": [13, 34, 64, 70, 137, 144], "refresh": [13, 47], "bottom": [13, 15, 19, 32, 38, 39, 48, 52, 68, 70, 75, 88, 101, 102, 125, 126, 145, 156, 157], "scroll": 13, "down": [13, 32, 98, 124, 158, 162, 164], "dn": 13, "screenshot": [13, 55], "rjlkei": 13, "pem": 13, "abl": [13, 58, 111], "ssh": [13, 30], "keypair": 13, "50": [13, 17, 34, 51, 55, 72, 104, 120, 150], "19": [13, 17, 26, 133, 134, 138, 161], "75": [13, 17, 92, 108, 142], "229": 13, "amazonaw": 13, "gfortran": [13, 62, 76, 85, 87, 107, 118, 146, 165], "ipython": [13, 78, 82, 84, 89, 90, 96, 98, 105, 108, 111, 123, 124], "scipi": [13, 37, 89, 110, 137, 158, 164], "netcdf": [13, 37, 44, 48, 124, 127, 129, 131, 158, 164, 166], "apach": 13, "server": [13, 31, 42, 55, 58, 59, 70, 127, 162, 166], "apt": [13, 85], "fetch": [13, 51], "bring": [13, 55, 58, 71, 151], "master": [13, 15, 27, 31, 58, 59, 62, 101, 112, 118, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 141, 145, 156, 157], "make_lib": 13, "compil": [13, 18, 19, 27, 38, 39, 43, 50, 62, 67, 76, 78, 84, 85, 89, 96, 97, 101, 105, 109, 118, 119, 140, 141, 146], "bashrc": [13, 44, 107, 146], "Of": [13, 28, 75, 108, 113, 162], "cours": [13, 28, 34, 47, 50, 64, 75, 99, 100, 108, 110, 113, 151, 162], "tar": [13, 129, 138], "instruct": [13, 19, 20, 26, 27, 38, 39, 42, 55, 56, 58, 59, 88, 90, 96, 99, 105, 108, 111, 118, 126, 133, 135, 136, 137, 138, 139, 165], "window": [13, 32, 71, 84, 146], "respons": [13, 52, 88, 103], "pretti": 13, "slow": [13, 55, 98, 107], "_plot": [13, 38, 39, 47, 71, 84, 118, 147, 153], "local": [13, 17, 19, 22, 27, 30, 55, 58, 63, 66, 67, 71, 92, 94, 101, 106, 125, 127, 136, 144, 162, 164, 167], "sftp": 13, "much": [13, 19, 30, 34, 36, 44, 49, 55, 77, 78, 81, 85, 110, 115, 119, 123, 130, 135, 136, 142, 148, 151, 161, 164], "smaller": [13, 36, 55, 68, 78, 94, 98, 119, 135, 144, 148, 150, 151, 152, 164], "quicker": [13, 142], "browser": [13, 30, 31, 38, 39, 55, 58, 153], "explain": [13, 19, 34, 52, 70, 132, 148, 153], "webserv": 13, "inbound": 13, "port": [13, 31, 95, 96, 101, 149], "22": [13, 26, 149, 164], "80": [13, 17, 55, 99, 142], "drop": [13, 18, 19, 58, 85, 130, 132, 144, 148], "tcp": 13, "Then": [13, 16, 30, 31, 32, 36, 47, 58, 59, 60, 67, 70, 75, 76, 84, 88, 91, 99, 105, 106, 107, 111, 118, 140, 142, 164, 165], "someth": [13, 29, 30, 58, 66, 74, 81, 98, 103, 104, 111, 118, 162, 165, 167], "shot": 13, "ln": 13, "expos": [13, 78], "home": [13, 31, 32, 62, 146], "scp": 13, "TO": [13, 65, 86], "send": [13, 26, 101, 140], "remot": [13, 55, 59, 127, 164, 166], "rel": [13, 18, 19, 22, 32, 43, 50, 52, 55, 75, 76, 82, 96, 109, 111, 116, 118, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 143, 149, 151, 153, 162, 166], "end": [13, 31, 32, 34, 35, 36, 47, 51, 55, 59, 63, 91, 98, 102, 108, 110, 113, 115, 118, 124, 125, 127, 139, 141, 142, 150, 152, 158, 161], "retriev": [13, 37, 51, 84, 89, 104, 164, 166], "sit": 13, "idl": 13, "action": [13, 14, 89], "restart": [13, 27, 47, 77, 84, 96, 118, 124, 125, 126, 127, 129, 132, 136, 148, 150, 152], "later": [13, 36, 37, 42, 54, 55, 62, 84, 104, 139], "But": [13, 19, 34, 42, 55, 72, 82, 107, 120, 127, 144, 146], "futur": [13, 24, 27, 28, 38, 39, 42, 49, 52, 57, 63, 68, 88, 104, 110, 124, 125, 127, 130, 136, 149, 158, 162], "job": [13, 134], "eb": 13, "runclaw": [14, 54, 118, 120, 129, 131, 137, 140], "autom": [14, 58, 89, 116], "certain": [14, 34, 48, 61, 70, 98, 115, 124, 142, 148], "keep": [14, 27, 30, 34, 35, 37, 38, 39, 76, 88, 91, 96, 106, 109, 116, 120], "log": [14, 27, 30, 31, 94, 95, 96, 103, 104], "came": 14, "rundir": [14, 91], "environ": [14, 18, 19, 27, 30, 38, 39, 40, 43, 54, 55, 58, 61, 62, 71, 74, 76, 78, 100, 107, 109, 111, 125, 164, 165], "noth": [15, 64, 106, 128, 145, 156, 157, 164, 167], "rememb": [15, 29, 76, 82, 99, 145, 156, 157], "b4step1": [15, 67, 167], "b4step2": [15, 145, 167], "b4step3": 15, "branch": [15, 20, 27, 31, 44, 54, 56, 59, 61, 62, 112, 116, 118, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 145, 156, 157], "tag": [15, 55, 59, 61, 112, 145, 149, 150, 156, 157], "bathymetri": [15, 48, 52, 55, 63, 102, 113, 125, 127, 141, 143, 145, 151, 162, 164], "area": [15, 24, 48, 104, 113, 125, 144, 145], "dy": [15, 51, 57, 63, 64, 77, 89, 94, 98, 123, 127, 145, 162, 164], "capac": [15, 102, 145, 148, 149, 150, 152], "length": [15, 32, 37, 49, 52, 63, 75, 101, 106, 125, 132, 145, 148, 149, 150, 151, 167], "latter": [15, 18, 47, 70, 72, 101, 130, 142, 145, 148, 158, 167], "quantiti": [15, 18, 19, 34, 37, 63, 71, 72, 91, 95, 96, 102, 106, 141, 145, 151], "coordinate_system": [15, 18, 49, 64, 145, 151], "impos": [16, 89, 115, 156, 157, 170], "chapter": [16, 140, 148, 167], "choic": [16, 48, 81, 104, 148, 150, 151, 152, 167], "bc_lower": [16, 88, 101, 108, 148, 150, 152], "bc_upper": [16, 88, 101, 108, 148, 150, 152], "extrap": [16, 101, 108, 148, 150], "outflow": [16, 148, 150, 152], "move": [16, 34, 38, 39, 48, 58, 62, 64, 75, 101, 115, 119, 121, 126, 151, 154, 162, 163], "normal": [16, 19, 35, 36, 56, 58, 64, 82, 101, 111, 140, 141, 148, 149, 150, 151, 152], "fairli": [16, 52, 125], "good": [16, 19, 30, 52, 55, 65, 76, 86, 108, 113, 116, 125, 132, 140], "outgo": 16, "let": [16, 48, 62, 86, 113, 126, 132, 140], "without": [16, 24, 35, 43, 47, 52, 63, 65, 66, 67, 70, 71, 82, 84, 86, 92, 96, 97, 98, 109, 111, 116, 136, 142, 146, 150, 152, 158, 165, 167], "particularli": [16, 19, 29, 31, 34, 36, 54, 55, 60, 61, 62, 75, 77, 111, 120, 123, 127, 132, 136, 144, 162], "perfect": 16, "hit": [16, 17, 36, 71, 77, 84, 98, 148], "obliqu": 16, "perfectli": 16, "wall": [16, 44, 101, 108, 124, 127, 129, 148, 150, 152, 161], "veloc": [16, 34, 36, 51, 64, 71, 84, 101, 102, 108, 125, 135, 143, 148, 149, 150, 151, 152, 167], "momentum": [16, 18, 34, 36, 37, 52, 64, 68, 98, 132, 141, 151, 154, 162], "third": [16, 18, 19, 34, 57, 92, 161, 164], "acoust": [16, 31, 38, 39, 52, 87, 88, 91, 93, 96, 104, 105, 123, 140, 150, 167], "p": [16, 17, 31, 84, 86, 88, 94, 97, 98, 102, 106, 118, 140, 170], "hu": [16, 18, 19, 36, 37, 64, 68, 102, 141, 151], "hv": [16, 19, 36, 37, 64, 68, 141, 151], "equal": [16, 19, 32, 34, 35, 36, 37, 49, 51, 55, 72, 75, 77, 99, 101, 115, 139, 142, 148, 150, 152, 162, 164], "far": [16, 18, 19, 41, 45, 70, 81, 128, 130, 132, 135], "symmetri": [16, 49], "physic": [16, 19, 47, 49, 55, 89, 94, 96, 108, 115, 170], "slightli": [16, 19, 42, 57, 125, 126, 132, 142], "complic": [16, 82, 89, 142, 147], "alwai": [16, 19, 24, 28, 29, 30, 34, 36, 37, 44, 57, 58, 62, 71, 88, 97, 114, 115, 119, 120, 132, 136, 144, 148, 150, 152, 162, 167], "alon": [16, 55], "topographi": [16, 17, 19, 27, 34, 35, 36, 37, 47, 48, 49, 52, 57, 63, 68, 72, 75, 83, 113, 114, 118, 119, 120, 121, 123, 124, 127, 130, 133, 136, 142, 143, 144, 156, 157, 163], "artifici": [16, 144], "ignor": [16, 49, 55, 63, 97, 123, 132, 143, 164], "incom": 16, "truncat": [16, 36, 77, 97, 148], "spuriou": [16, 34, 116], "extropl": 16, "dry": [16, 17, 27, 34, 48, 102, 130, 133, 141, 144], "land": [16, 42, 48, 50, 55, 58, 59, 63, 70, 72, 83, 130, 144, 151, 164], "tank": [16, 49, 52], "bc2amr": [16, 127], "calhounhelzellevequ": 16, "envis": 16, "fold": 16, "piec": [16, 52, 94], "glu": 16, 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"dispers": [17, 18, 48, 49, 52], "submit": 17, "1984": 17, "partial": [17, 78, 113], "differenti": [17, 32], "53": 17, "484": 17, "512": 17, "rigoutso": 17, "1991": 17, "ieee": 17, "tran": 17, "sy": [17, 42, 70, 91, 150, 152], "man": [17, 27, 48, 52, 151, 156, 157], "cyber": 17, "21": [17, 71, 92, 94, 123, 124, 138], "1278": 17, "1286": 17, "2018": [17, 26, 58, 127, 128, 138], "phd": 17, "thesi": [17, 104], "pure": [17, 56, 84, 94, 96, 97, 99, 104, 116, 141], "appl": 17, "geophi": 17, "173": 17, "4055": 17, "4074": 17, "info": [17, 31, 32, 35, 36, 37, 47, 59, 63, 71, 91, 94, 97, 98, 104, 125, 135, 149, 150, 158], "analysi": 17, "evalu": [17, 29, 32, 36, 37, 68, 72, 88, 94, 104, 164, 167], "preprint": 17, "2000": [17, 57, 162, 164], "165": [17, 161], "126": [17, 164], "166": 17, "leveque96": 17, "1996": 17, "advect": [17, 82, 96, 99, 140, 141, 152, 167], "incompress": 17, "leveque1996": 17, "33": [17, 94, 142], "627": 17, "665": 17, "1997": [17, 96], "multi": [17, 55, 88, 119, 121, 124, 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5.0": [[24, "changes-to-input-parameters-in-setrun-py-from-4-x-to-5-0"]], "Changes to general parameters": [[24, "changes-to-general-parameters"]], "Changes to AMR parameters": [[24, "changes-to-amr-parameters"]], "Changes to GeoClaw parameters": [[24, "changes-to-geoclaw-parameters"]], "Changes to plotting routines": [[24, "changes-to-plotting-routines"]], "Clawpack components": [[25, "clawpack-components"]], "Other repositories": [[25, "other-repositories"]], "Clawpack Community": [[26, "clawpack-community"]], "User Workshops, Clinics, and Tutorials": [[26, "user-workshops-clinics-and-tutorials"]], "Available for streaming": [[26, "available-for-streaming"]], "Upcoming": [[26, "upcoming"], [26, "id1"]], "Recent": [[26, "recent"]], "Developer Workshops and Sprint Sessions": [[26, "developer-workshops-and-sprint-sessions"]], "Previous": [[26, "previous"]], "Other Clawpack events": [[26, "other-clawpack-events"]], "Contents": [[27, "id1"], [30, "contents"], [42, "contents"], [70, 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"developers-resources"]], "References": [[27, "references"], [56, "references"]], "Contributing examples and applications": [[28, "contributing-examples-and-applications"]], "current_data": [[29, "current-data"]], "Attributes of current_data:": [[29, "attributes-of-current-data"]], "Developers\u2019 Guide": [[30, "developers-guide"]], "Guidelines for contributing": [[30, "guidelines-for-contributing"]], "Reporting and fixing bugs": [[30, "reporting-and-fixing-bugs"]], "Developer communication": [[30, "developer-communication"]], "Installation instructions for developers": [[30, "installation-instructions-for-developers"]], "Cloning the most recent code from Github": [[30, "cloning-the-most-recent-code-from-github"]], "Checking out the master branch on each repository": [[30, "checking-out-the-master-branch-on-each-repository"]], "Updating to the latest master branch": [[30, "updating-to-the-latest-master-branch"]], "Never commit to master": [[30, "never-commit-to-master"]], "Adding your fork as a remote": [[30, "adding-your-fork-as-a-remote"]], "Modifying code": [[30, "modifying-code"]], "Issuing a pull request": [[30, "issuing-a-pull-request"]], "Testing a pull request": [[30, "testing-a-pull-request"]], "Top-level pull requests": [[30, "top-level-pull-requests"]], "Git workflow": [[30, "git-workflow"]], "Catching errors with Pyflakes and Pylint": [[30, "catching-errors-with-pyflakes-and-pylint"]], "Checking test coverage": [[30, "checking-test-coverage"]], "Trouble-Shooting Tips": [[30, "trouble-shooting-tips"]], "Docker for Clawpack": [[31, "docker-for-clawpack"]], "Using Version 5.9.0 or above": [[31, "using-version-5-9-0-or-above"]], "Getting started": [[31, "getting-started"]], "Stopping a container": [[31, "stopping-a-container"]], "Restarting a container": [[31, "restarting-a-container"]], "Running Jupyter notebooks": [[31, "running-jupyter-notebooks"]], "Moving files between the docker container and the host machine": [[31, "moving-files-between-the-docker-container-and-the-host-machine"]], "Some other useful docker commands": [[31, "some-other-useful-docker-commands"]], "Creating your own docker image": [[31, "creating-your-own-docker-image"]], "Dockerfiles for binder": [[31, "dockerfiles-for-binder"]], "dtopotools module for moving topography": [[32, "dtopotools-module-for-moving-topography"]], "Documentation auto-generated from the module docstrings": [[32, "module-clawpack.geoclaw.dtopotools"], [35, "module-clawpack.geoclaw.fgmax_tools"], [37, "module-clawpack.geoclaw.fgout_tools"], [51, "module-clawpack.geoclaw.util"], [63, "module-clawpack.geoclaw.kmltools"], [164, "module-clawpack.geoclaw.topotools"]], "Fortran 77 vs. Fortran 90 files": [[33, "fortran-77-vs-fortran-90-files"]], "Fixed grid monitoring (fgmax)": [[34, "fixed-grid-monitoring-fgmax"]], "Input file specification": [[34, "input-file-specification"], [36, "input-file-specification"]], "Different point styles": [[34, "different-point-styles"]], "Other attributes": [[34, "other-attributes"]], "Values to monitor": [[34, "values-to-monitor"]], "Choice of interpolation procedure": [[34, "choice-of-interpolation-procedure"], [36, "choice-of-interpolation-procedure"]], "A simple example": [[34, "a-simple-example"], [36, "a-simple-example"]], "Processing and plotting fgmax output": [[34, "processing-and-plotting-fgmax-output"]], "Format of the output files": [[34, "format-of-the-output-files"]], "fgmax examples": [[34, "fgmax-examples"]], "fgmax_tools module for working with fgmax grids": [[35, "fgmax-tools-module-for-working-with-fgmax-grids"]], "Fixed grid output (fgout)": [[36, "fixed-grid-output-fgout"]], "Format of fgout output": [[36, "format-of-fgout-output"]], "Using setplot.py to produce plots": [[36, "using-setplot-py-to-produce-plots"]], "Reading and plotting fgout arrays directly": [[36, "reading-and-plotting-fgout-arrays-directly"]], "fgout grid registration": [[36, "fgout-grid-registration"]], "fgout examples": [[36, "fgout-examples"]], "fgout_tools module for working with fgout grids": [[37, "fgout-tools-module-for-working-with-fgout-grids"]], "Running an example": [[38, "running-an-example"], [39, "running-an-example"], [40, "running-an-example"]], "Classic": [[38, "classic"], [39, "classic"], [160, "classic"]], "Testing your Fortran installation and running an example": [[39, "testing-your-fortran-installation-and-running-an-example"]], "More examples": [[39, "more-examples"]], "Testing a PyClaw installation and running an example": [[40, "testing-a-pyclaw-installation-and-running-an-example"]], "From the Jupyter notebook": [[40, "from-the-jupyter-notebook"]], "From the IPython interpreter": [[40, "from-the-ipython-interpreter"]], "From the command line": [[40, "from-the-command-line"], [93, "from-the-command-line"]], "Specifying flagregions for adaptive refinement": [[41, "specifying-flagregions-for-adaptive-refinement"]], "Using ruled rectangles as flagregions": [[41, "using-ruled-rectangles-as-flagregions"]], "Force Cells to be Dry Initially": [[42, "force-cells-to-be-dry-initially"]], "Sample topography from a 1/3 arcsecond DEM": [[42, "sample-topography-from-a-1-3-arcsecond-dem"], [70, "sample-topography-from-a-1-3-arcsecond-dem"]], "Creating the force_dry_init array": [[42, "creating-the-force-dry-init-array"]], "Create file to read into GeoClaw": [[42, "create-file-to-read-into-geoclaw"]], "Usage in GeoClaw Fortran code": [[42, "usage-in-geoclaw-fortran-code"]], "Internal GeoClaw modifications": [[42, "internal-geoclaw-modifications"]], "Fortran version": [[43, "fortran-version"]], "Makefiles": [[43, "makefiles"]], "More tips": [[43, "more-tips"]], "Fortran Compilers": [[44, "fortran-compilers"]], "FC environment variable": [[44, "fc-environment-variable"]], "FFLAGS environment variable": [[44, "fflags-environment-variable"]], "LFLAGS environment variable": [[44, "lflags-environment-variable"]], "Pre-Processor and the PPFLAGS environment variable": [[44, "pre-processor-and-the-ppflags-environment-variable"]], "gfortran compiler": [[44, "gfortran-compiler"]], "Intel fortran compiler": [[44, "intel-fortran-compiler"]], "Examples from the book FVMHP": [[45, "examples-from-the-book-fvmhp"]], "Available examples": [[45, "available-examples"]], "YouTube Videos": [[45, "youtube-videos"]], "Clawpack Gallery": [[46, "clawpack-gallery"]], "Gauges": [[47, "gauges"]], "Gauge parameters in setrun": [[47, "gauge-parameters-in-setrun"]], "Plotting tools": [[47, "plotting-tools"]], "Plotting gauge locations": [[47, "plotting-gauge-locations"]], "GeoClaw Description and Detailed Contents": [[48, "geoclaw-description-and-detailed-contents"]], "GeoClaw in One Space Dimension": [[49, "geoclaw-in-one-space-dimension"]], "Coordinate systems": [[49, "coordinate-systems"]], "Uniform and mapped grids": [[49, "uniform-and-mapped-grids"]], "Topograpy data": [[49, "topograpy-data"]], "Moving topograpy (dtopo) data": [[49, "moving-topograpy-dtopo-data"]], "Getting started with GeoClaw": [[50, "getting-started-with-geoclaw"]], "Running a GeoClaw code": [[50, "running-a-geoclaw-code"]], "Topography": [[50, "topography"]], "Plotting GeoClaw results": [[50, "plotting-geoclaw-results"]], "Setting up a new example": [[50, "setting-up-a-new-example"]], "geoclaw.util module of utility functions": [[51, "geoclaw-util-module-of-utility-functions"]], "Cautionary Hints on using GeoClaw": [[52, "cautionary-hints-on-using-geoclaw"]], "Tsunami hazard modeling": [[52, "tsunami-hazard-modeling"]], "GeoClaw plotting tools": [[53, "geoclaw-plotting-tools"]], "Plotting water depth or surface elevation": [[53, "plotting-water-depth-or-surface-elevation"]], "Tips on latitude-longitude coordinate axes": [[53, "tips-on-latitude-longitude-coordinate-axes"]], "Keeping track of repository versions with Git": [[54, "keeping-track-of-repository-versions-with-git"]], "Visualizing GeoClaw results in Google Earth": [[55, "visualizing-geoclaw-results-in-google-earth"]], "Basic requirements": [[55, "basic-requirements"]], "Optional GDAL library": [[55, "optional-gdal-library"]], "An example : The Chile 2010 tsunami event": [[55, "an-example-the-chile-2010-tsunami-event"]], "Plotting attributes needed for Google Earth": [[55, "plotting-attributes-needed-for-google-earth"]], "plotdata attributes": [[55, "plotdata-attributes"]], "plotfigure attributes": [[55, "plotfigure-attributes"]], "Creating the figures": [[55, "creating-the-figures"]], "plotaxes attributes": [[55, "plotaxes-attributes"]], "plotitem attributes": [[55, "plotitem-attributes"]], "Adding a colorbar overlay": [[55, "adding-a-colorbar-overlay"]], "Gauge plots": [[55, "gauge-plots"]], "Additional plotdata attributes": [[55, "additional-plotdata-attributes"]], "Plotting tips": [[55, "plotting-tips"]], "KML and KMZ files": [[55, "kml-and-kmz-files"]], "Tiling images for faster loading": [[55, "tiling-images-for-faster-loading"]], "Removing aliasing artifacts": [[55, "removing-aliasing-artifacts"]], "Creating multiple figures at different resolutions": [[55, "creating-multiple-figures-at-different-resolutions"]], "Mapping topography data to latitude/longitude coordinates": [[55, "mapping-topography-data-to-latitude-longitude-coordinates"]], "Publishing your results": [[55, "id1"]], "Using the GPU version of Clawpack": [[56, "using-the-gpu-version-of-clawpack"]], "Grid registration": [[57, "grid-registration"]], "NetCDF files": [[57, "netcdf-files"]], "Guide for updating this documentation": [[58, "guide-for-updating-this-documentation"]], "Git branches and tags": [[58, "git-branches-and-tags"]], "Configuration and style files": [[58, "configuration-and-style-files"]], "Updating the docs for a new release": [[58, "updating-the-docs-for-a-new-release"]], "To generate docs including previous versions": [[58, "to-generate-docs-including-previous-versions"]], "Updating for a new major version": [[58, "updating-for-a-new-major-version"]], "Updating the gallery": [[58, "updating-the-gallery"]], "Updating the webpages": [[58, "updating-the-webpages"]], "Extra files for webpages not built by Sphinx": [[58, "extra-files-for-webpages-not-built-by-sphinx"]], "Pages from other clawpack repositories": [[58, "pages-from-other-clawpack-repositories"]], "Guide for doing a Clawpack release": [[59, "guide-for-doing-a-clawpack-release"]], "Preparation": [[59, "preparation"]], "Version numbers": [[59, "version-numbers"]], "Release candidates": [[59, "release-candidates"]], "Create a tar file and a Github release": [[59, "create-a-tar-file-and-a-github-release"]], "Final release": [[59, "final-release"]], "Pypi": [[59, "pypi"]], "Zenodo": [[59, "zenodo"]], "Open Science Framework (OSF)": [[59, "open-science-framework-osf"]], "Updating the documentation": [[59, "updating-the-documentation"]], "Updating the apps repository": [[59, "updating-the-apps-repository"]], "Updating the Dockerfile": [[59, "updating-the-dockerfile"]], "Installing Clawpack": [[60, "installing-clawpack"]], "Next steps:": [[60, "next-steps"], [61, "next-steps"], [62, "next-steps"]], "Options for installing Clawpack Fortran codes": [[61, "options-for-installing-clawpack-fortran-codes"]], "tar file": [[61, "tar-file"]], "git clone": [[61, "git-clone"]], "pip install instructions": [[62, "pip-install-instructions"]], "Quick Installation of PyClaw with pip": [[62, "quick-installation-of-pyclaw-with-pip"]], "Quick Installation of all packages with pip": [[62, "quick-installation-of-all-packages-with-pip"]], "Using pip to install a different version": [[62, "using-pip-to-install-a-different-version"]], "Experimenting with code in the examples directories": [[62, "experimenting-with-code-in-the-examples-directories"]], "Troubleshooting pip install": [[62, "troubleshooting-pip-install"]], "kmltools module of utility functions": [[63, "kmltools-module-of-utility-functions"]], "Lagrangian gauges for particle tracking": [[64, "lagrangian-gauges-for-particle-tracking"]], "Specifying Lagrangian Gauges": [[64, "specifying-lagrangian-gauges"]], "Visclaw tools for plotting": [[64, "visclaw-tools-for-plotting"]], "An alternative using fgout grids": [[64, "an-alternative-using-fgout-grids"]], "Clawpack Makefiles": [[66, "clawpack-makefiles"]], "Applications directory Makefiles": [[66, "applications-directory-makefiles"]], "output": [[66, "output"]], "plots": [[66, "plots"]], "Variables": [[66, "variables"]], "Compiler flags": [[66, "compiler-flags"]], "Duplicate Base Source Name": [[66, "duplicate-base-source-name"]], "Library routines in Makefiles": [[67, "library-routines-in-makefiles"]], "Replacing files with the same name as library files": [[67, "replacing-files-with-the-same-name-as-library-files"]], "Using a modified library routine with a different name": [[67, "using-a-modified-library-routine-with-a-different-name"]], "Manning friction term": [[68, "manning-friction-term"]], "The mapc2p function": [[69, "the-mapc2p-function"]], "Marching Front algorithm": [[70, "marching-front-algorithm"]], "Function arguments": [[70, "function-arguments"]], "output array": [[70, "output-array"]], "creating a masked array": [[70, "creating-a-masked-array"]], "topofile mask for initializing dry points": [[70, "topofile-mask-for-initializing-dry-points"]], "fgmax points": [[70, "fgmax-points"]], "flag regions": [[70, "flag-regions"]], "The mask argument": [[70, "the-mask-argument"]], "The previous_pts_chosen argument": [[70, "the-previous-pts-chosen-argument"]], "Finding all points below a given elevation": [[70, "finding-all-points-below-a-given-elevation"]], "Create a buffer zone along shore": [[70, "create-a-buffer-zone-along-shore"]], "Choose points only near shore": [[70, "choose-points-only-near-shore"]], "Write out the masked array indicating fgmax points": [[70, "write-out-the-masked-array-indicating-fgmax-points"]], "Creating an AMR flag region": [[70, "creating-an-amr-flag-region"]], "Determining dry areas below MHW": [[70, "determining-dry-areas-below-mhw"]], "Plotting using Matlab": [[71, "plotting-using-matlab"]], "The Matlab search path": [[71, "the-matlab-search-path"]], "Creating output files": [[71, "creating-output-files"]], "The plotclaw command": [[71, "the-plotclaw-command"]], "The setplot file": [[71, "the-setplot-file"]], "The afterframe file": [[71, "the-afterframe-file"]], "Getting help": [[71, "getting-help"]], "Trouble shooting": [[71, "trouble-shooting"]], "Output files not found": [[71, "output-files-not-found"]], "MaxFrames not set": [[71, "maxframes-not-set"]], "Switching examples": [[71, "switching-examples"]], "Matlab Gallery": [[71, "matlab-gallery"]], "Nearshore interpolation": [[72, "nearshore-interpolation"]], "Using NetCDF output": [[73, "using-netcdf-output"]], "Creating a new application directory": [[74, "creating-a-new-application-directory"]], "Copying an existing example": [[74, "copying-an-existing-example"]], "Earthquake sources: Fault slip and the Okada model": [[75, "earthquake-sources-fault-slip-and-the-okada-model"]], "Fault slip on rectangular subfaults": [[75, "fault-slip-on-rectangular-subfaults"]], "Okada model": [[75, "okada-model"]], "Kinematic rupture": [[75, "kinematic-rupture"]], "Fault slip on triangular subfaults": [[75, "fault-slip-on-triangular-subfaults"]], "Using OpenMP": [[76, "using-openmp"]], "Using OpenMP with AMR": [[76, "using-openmp-with-amr"]], "Fixed grid output in GeoClaw": [[76, "fixed-grid-output-in-geoclaw"]], "Output data sytles and formats": [[77, "output-data-sytles-and-formats"]], "Output style": [[77, "output-style"]], "Output data formats": [[77, "output-data-formats"]], "ASCII output data format": [[77, "ascii-output-data-format"]], "fort.t0002": [[77, "fort-t0002"]], "fort.q0002": [[77, "fort-q0002"]], "Raw binary output data formats": [[77, "raw-binary-output-data-formats"]], "NetCDF output data format": [[77, "netcdf-output-data-format"]], "Output of aux arrays": [[77, "output-of-aux-arrays"]], "Which Clawpack solver should I use?": [[78, "which-clawpack-solver-should-i-use"]], "Installation and user interface": [[78, "installation-and-user-interface"]], "Algorithmic differences": [[78, "algorithmic-differences"]], "Parallel computing": [[78, "parallel-computing"]], "Clawpack Community Photos": [[79, "clawpack-community-photos"]], "2016 Developers\u2019 workshop at University of Washington": [[79, "id1"]], "2015 Developers\u2019 workshop at University of Utah": [[79, "id2"]], "2014 HPC3 workshop at KAUST": [[79, "id3"]], "2013 Claw-Dev workshop at UW": [[79, "id4"]], "2012 HPC3 workshop at KAUST": [[79, "id6"]], "2011 coding sprints at UW": [[79, "coding-sprints-at-uw"]], "2010 GeoClaw hacking UW": [[79, "geoclaw-hacking-uw"]], "Plotting examples": [[80, "plotting-examples"]], "Plotting with Visclaw": [[81, "plotting-with-visclaw"]], "Plotting as post-processing": [[81, "plotting-as-post-processing"]], "Plotting on the fly": [[81, "plotting-on-the-fly"]], "Plotting hints and FAQ": [[82, "plotting-hints-and-faq"]], "What\u2019s the difference between make .plots and make plots ?": [[82, "what-s-the-difference-between-make-plots-and-make-plots"]], "How to plot a something other than a component of q?": [[82, "how-to-plot-a-something-other-than-a-component-of-q"]], "How to add another curve to a plot, e.g. the true solution?": [[82, "how-to-add-another-curve-to-a-plot-e-g-the-true-solution"]], "How to change the title in a plot?": [[82, "how-to-change-the-title-in-a-plot"]], "How to specify outdir, the directory to find fort.* files for plotting?": [[82, "how-to-specify-outdir-the-directory-to-find-fort-files-for-plotting"]], "How to specify a different outdir for some plot item?": [[82, "how-to-specify-a-different-outdir-for-some-plot-item"]], "How to set plot parameters that are not provided as attributes of ClawPlotItem?": [[82, "how-to-set-plot-parameters-that-are-not-provided-as-attributes-of-clawplotitem"]], "How to change the size or background color of a figure?": [[82, "how-to-change-the-size-or-background-color-of-a-figure"]], "Specifying colormaps for pcolor or contourf plots": [[82, "specifying-colormaps-for-pcolor-or-contourf-plots"]], "How to debug setplot.py?": [[82, "how-to-debug-setplot-py"]], "Plotting routines for GeoClaw": [[83, "plotting-routines-for-geoclaw"]], "Plotting options in Python": [[84, "plotting-options-in-python"]], "Producing html plots from the command line": [[84, "producing-html-plots-from-the-command-line"]], "Producing a latex file with plots from the command line": [[84, "producing-a-latex-file-with-plots-from-the-command-line"]], "Setting plot parameters with a setplot function": [[84, "setting-plot-parameters-with-a-setplot-function"]], "Interactive plotting with Iplotclaw": [[84, "interactive-plotting-with-iplotclaw"]], "Access to current_data": [[84, "access-to-current-data"]], "printframes": [[84, "printframes"]], "Specifying what and how to plot": [[84, "specifying-what-and-how-to-plot"]], "Installation Prerequisites": [[85, "installation-prerequisites"]], "Operating system": [[85, "operating-system"]], "Fortran": [[85, "fortran"]], "Python": [[85, "python"]], "pip": [[85, "pip"]], "Git": [[85, "git"]], "About PyClaw": [[86, "about-pyclaw"]], "Contributors": [[86, "contributors"]], "PyClaw Basics": [[87, "pyclaw-basics"]], "Understanding Pyclaw Classes": [[88, "understanding-pyclaw-classes"]], "Flow of a Pyclaw Simulation": [[88, "flow-of-a-pyclaw-simulation"]], "Creation of a Pyclaw Solution": [[88, "creation-of-a-pyclaw-solution"]], "Creation of a Pyclaw Solver": [[88, "creation-of-a-pyclaw-solver"]], "Creating and Running a Simulation with Controller": [[88, "creating-and-running-a-simulation-with-controller"]], "Restarting a simulation": [[88, "restarting-a-simulation"]], "Outputting aux values": [[88, "outputting-aux-values"]], "Outputting derived quantities": [[88, "outputting-derived-quantities"], [98, "outputting-derived-quantities"]], "Porting a problem from Clawpack 4.6.x to PyClaw": [[89, "porting-a-problem-from-clawpack-4-6-x-to-pyclaw"]], "Running PyClaw in the cloud": [[90, "running-pyclaw-in-the-cloud"]], "Sage Math Cloud": [[90, "sage-math-cloud"]], "Pyclaw Controller Class": [[91, "pyclaw-controller-class"]], "pyclaw.controller.Controller": [[91, "pyclaw-controller-controller"]], "Pyclaw Limiters": [[92, "pyclaw-limiters"]], "clawpack.pyclaw.limiters.tvd": [[92, "module-clawpack.pyclaw.limiters.tvd"]], "CFL Independent Limiters": [[92, "cfl-independent-limiters"]], "CFL Dependent Limiters": [[92, "cfl-dependent-limiters"]], "Working with PyClaw\u2019s built-in examples": [[93, "working-with-pyclaw-s-built-in-examples"]], "Running and plotting examples": [[93, "running-and-plotting-examples"]], "Interactively in IPython": [[93, "interactively-in-ipython"]], "Built-in examples": [[93, "built-in-examples"]], "Adding new examples": [[93, "adding-new-examples"]], "PyClaw Geometry": [[94, "pyclaw-geometry"]], "Serial Geometry Objects": [[94, "serial-geometry-objects"]], "pyclaw.geometry.Domain": [[94, "pyclaw-geometry-domain"]], "pyclaw.geometry.Patch": [[94, "pyclaw-geometry-patch"]], "pyclaw.geometry.Grid": [[94, "pyclaw-geometry-grid"]], "pyclaw.geometry.Dimension": [[94, "pyclaw-geometry-dimension"]], "Parallel Geometry Objects": [[94, "parallel-geometry-objects"]], "petclaw.geometry.Domain": [[94, "petclaw-geometry-domain"]], "petclaw.geometry.Patch": [[94, "petclaw-geometry-patch"]], "Going Further": [[95, "going-further"]], "PyClaw installation": [[96, "pyclaw-installation"]], "Features": [[96, "features"]], "PyClaw Documentation": [[96, "pyclaw-documentation"]], "PyClaw Modules reference documentation": [[96, "pyclaw-modules-reference-documentation"]], "Riemann Solvers reference documentation": [[96, "riemann-solvers-reference-documentation"]], "Indices and tables": [[96, "indices-and-tables"]], "Citing PyClaw": [[96, "citing-pyclaw"]], "Pyclaw Input/Output Package": [[97, "pyclaw-input-output-package"]], "pyclaw.fileio.ascii": [[97, "module-clawpack.pyclaw.fileio.ascii"]], "pyclaw.fileio.binary": [[97, "module-clawpack.pyclaw.fileio.binary"]], "pyclaw.fileio.hdf5": [[97, "module-clawpack.pyclaw.fileio.hdf5"]], "pyclaw.fileio.netcdf": [[97, "module-clawpack.pyclaw.fileio.netcdf"]], "PyClaw output": [[98, "pyclaw-output"]], "Output frames": [[98, "output-frames"]], "When output is saved/written": [[98, "when-output-is-saved-written"]], "Where and how output is written": [[98, "where-and-how-output-is-written"]], "What output is written": [[98, "what-output-is-written"]], "Outputting functionals": [[98, "outputting-functionals"]], "Using gauges": [[98, "using-gauges"]], "Logging": [[98, "logging"]], "Running in parallel": [[99, "running-in-parallel"]], "Installing PETSc": [[99, "installing-petsc"]], "Testing your installation": [[99, "testing-your-installation"], [160, "testing-your-installation"]], "Running and plotting an example": [[99, "running-and-plotting-an-example"]], "Tips for making your application run correctly in parallel": [[99, "tips-for-making-your-application-run-correctly-in-parallel"]], "Passing options to PETSc": [[99, "passing-options-to-petsc"]], "Plotting PyClaw results": [[100, "plotting-pyclaw-results"]], "Basics": [[100, "basics"]], "Plotting result from parallel runs": [[100, "plotting-result-from-parallel-runs"]], "Setting up your own problem": [[101, "setting-up-your-own-problem"]], "Writing the initialization script": [[101, "writing-the-initialization-script"]], "Setting initial conditions": [[101, "setting-initial-conditions"]], "Setting auxiliary variables": [[101, "setting-auxiliary-variables"]], "Setting boundary conditions": [[101, "setting-boundary-conditions"]], "Setting solver options": [[101, "setting-solver-options"]], "Using your own Riemann solver": [[101, "using-your-own-riemann-solver"]], "Adding source terms": [[101, "adding-source-terms"]], "Setting up the Makefile": [[101, "setting-up-the-makefile"]], "Riemann Solver Package": [[102, "riemann-solver-package"]], "Acoustics": [[102, "acoustics"]], "Advection": [[102, "advection"]], "Burgers Equation": [[102, "burgers-equation"]], "Euler Equations": [[102, "euler-equations"]], "Shallow Water Equations": [[102, "shallow-water-equations"]], "PyClaw Solutions": [[103, "pyclaw-solutions"]], "pyclaw.solution.Solution": [[103, "pyclaw-solution-solution"]], "Using PyClaw\u2019s solvers: Classic and SharpClaw": [[104, "using-pyclaw-s-solvers-classic-and-sharpclaw"]], "SharpClaw Solvers": [[104, "sharpclaw-solvers"]], "pyclaw.sharpclaw": [[104, "pyclaw-sharpclaw"]], "Pyclaw Classic Clawpack Solvers": [[104, "pyclaw-classic-clawpack-solvers"]], "pyclaw.classic.solver": [[104, "pyclaw-classic-solver"]], "Change to Custom BC Function Signatures": [[104, "change-to-custom-bc-function-signatures"]], "Installing PyClaw": [[105, "installing-pyclaw"]], "Dependencies: Python, gfortran, numpy, and matplotlib": [[105, "dependencies-python-gfortran-numpy-and-matplotlib"]], "Obtaining Python, numpy, and matplotlib": [[105, "obtaining-python-numpy-and-matplotlib"]], "Clawpack": [[105, "clawpack"]], "Testing your installation with nose": [[105, "testing-your-installation-with-nose"]], "Next steps": [[105, "next-steps"]], "PyClaw State": [[106, "pyclaw-state"]], "Serial pyclaw.state.State": [[106, "serial-pyclaw-state-state"]], "Parallel petclaw.state.State": [[106, "parallel-petclaw-state-state"]], "Troubleshooting": [[107, "troubleshooting"], [165, "troubleshooting"]], "Compilation errors": [[107, "compilation-errors"]], "Use Fortran-ordered arrays": [[107, "use-fortran-ordered-arrays"]], "Installation": [[107, "installation"]], "PyClaw tutorial: Solve the acoustics equations": [[108, "pyclaw-tutorial-solve-the-acoustics-equations"]], "The Solver": [[108, "the-solver"]], "The domain": [[108, "the-domain"]], "Initial condition": [[108, "initial-condition"]], "Problem-specific parameters": [[108, "problem-specific-parameters"]], "The controller": [[108, "the-controller"]], "Pyclaw Utility Module": [[109, "pyclaw-utility-module"]], "pyclaw.util": [[109, "module-clawpack.pyclaw.util"]], "Python Hints": [[110, "python-hints"]], "Dropping support for Python 2.7": [[110, "dropping-support-for-python-2-7"]], "References and tutorials": [[110, "references-and-tutorials"]], "Notebooks": [[110, "notebooks"]], "Python path": [[111, "python-path"]], "whichclaw.py": [[111, "whichclaw-py"]], "Which version was imported?": [[111, "which-version-was-imported"]], "sys.path": [[111, "sys-path"]], "easy-install.pth": [[111, "easy-install-pth"]], "PYTHONPATH": [[111, "pythonpath"], [146, "pythonpath"]], "qinit default routines": [[112, "qinit-default-routines"]], "qinit routine in GeoClaw": [[112, "qinit-routine-in-geoclaw"]], "Quick start guide for storm surge modeling": [[113, "quick-start-guide-for-storm-surge-modeling"]], "Quick start guide for tsunami modeling": [[114, "quick-start-guide-for-tsunami-modeling"]], "AMR refinement criteria": [[115, "amr-refinement-criteria"]], "Flagging criteria": [[115, "flagging-criteria"]], "flag2refine": [[115, "flag2refine"]], "Richardson extrapolation": [[115, "richardson-extrapolation"]], "Specifying AMR regions": [[115, "specifying-amr-regions"]], "Implementation": [[115, "implementation"]], "Flagging criteria in GeoClaw": [[115, "flagging-criteria-in-geoclaw"]], "Regression testing": [[116, "regression-testing"]], "Running the tests": [[116, "running-the-tests"], [116, "id2"]], "Fortran codes": [[116, "fortran-codes"]], "Travis continuous integration": [[116, "travis-continuous-integration"]], "Diff tools for checking test output": [[116, "diff-tools-for-checking-test-output"]], "chardiff tool for line-by-line comparison of output files": [[116, "chardiff-tool-for-line-by-line-comparison-of-output-files"]], "imagediff tool for pixel comparison of plots": [[116, "imagediff-tool-for-pixel-comparison-of-plots"]], "Running and writing tests in PyClaw": [[116, "running-and-writing-tests-in-pyclaw"]], "Running serial tests simultaneously": [[116, "running-serial-tests-simultaneously"]], "Running a specific test": [[116, "running-a-specific-test"]], "Doctests": [[116, "doctests"]], "Writing New Tests": [[116, "writing-new-tests"]], "v5.0.0 release notes": [[117, "v5-0-0-release-notes"]], "Changes to classic, riemann, amrclaw, geoclaw, visclaw": [[117, "changes-to-classic-riemann-amrclaw-geoclaw-visclaw"]], "v5.10.0 release notes": [[118, "v5-10-0-release-notes"]], "v5.1.0 release notes": [[119, "v5-1-0-release-notes"]], "v5.2.0 release notes": [[120, "v5-2-0-release-notes"]], "v5.2.1 release notes": [[121, "v5-2-1-release-notes"]], "v5.2.2 release notes": [[122, "v5-2-2-release-notes"]], "v5.3.0 release notes": [[123, "v5-3-0-release-notes"]], "v5.3.1 release notes": [[124, "v5-3-1-release-notes"]], "v5.4.0 release notes": [[125, "v5-4-0-release-notes"]], "Global changes": [[125, "global-changes"]], "v5.4.1 release notes": [[126, "v5-4-1-release-notes"]], "Changes to documentation": [[126, "changes-to-documentation"], [127, "changes-to-documentation"]], "v5.5.0 release notes": [[127, "v5-5-0-release-notes"]], "v5.6.0 release notes": [[128, "v5-6-0-release-notes"]], "v5.6.1 release notes": [[129, "v5-6-1-release-notes"]], "v5.7.0 release notes": [[130, "v5-7-0-release-notes"]], "Python support": [[130, "python-support"]], "v5.7.1 release notes": [[131, "v5-7-1-release-notes"]], "v5.8.0 release notes": [[132, "v5-8-0-release-notes"]], "v5.8.1 release notes": [[133, "v5-8-1-release-notes"]], "v5.8.2 release notes": [[134, "v5-8-2-release-notes"]], "v5.9.0 release notes": [[135, "v5-9-0-release-notes"]], "v5.9.1 release notes": [[136, "v5-9-1-release-notes"]], "v5.9.2 release notes": [[137, "v5-9-2-release-notes"]], "Releases of Clawpack and release notes": [[138, "releases-of-clawpack-and-release-notes"]], "Other notes:": [[138, "other-notes"]], "Releases:": [[138, "id1"]], "Clawpack 4.x": [[138, "clawpack-4-x"]], "Checkpointing and restarting": [[139, "checkpointing-and-restarting"]], "Checkpointing a computation": [[139, "checkpointing-a-computation"]], "Restarting a computation": [[139, "restarting-a-computation"]], "Modifying the Makefile for a restart": [[139, "modifying-the-makefile-for-a-restart"]], "Output files after a restart": [[139, "output-files-after-a-restart"]], "Riemann solvers": [[140, "riemann-solvers"]], "One-dimensional Riemann solver": [[140, "one-dimensional-riemann-solver"]], "Pointwise Riemann solvers": [[140, "pointwise-riemann-solvers"]], "f-wave Riemann solvers": [[140, "f-wave-riemann-solvers"]], "2D Riemann solvers": [[140, "d-riemann-solvers"]], "Using a custom solver": [[140, "using-a-custom-solver"]], "Adding a solver to the Riemann repository": [[140, "adding-a-solver-to-the-riemann-repository"]], "Shallow water Riemann solvers in Clawpack": [[141, "shallow-water-riemann-solvers-in-clawpack"]], "One dimension": [[141, "one-dimension"]], "Two dimensions": [[141, "two-dimensions"]], "Layered shallow water equations": [[141, "layered-shallow-water-equations"]], "Potentially useful contributions (what\u2019s missing)": [[141, "potentially-useful-contributions-whats-missing"]], "Demonstrations": [[141, "demonstrations"]], "Roe": [[141, "roe"]], "HLL": [[141, "hll"]], "Ruled Rectangles": [[142, "ruled-rectangles"]], "Relation to convex polygons": [[142, "relation-to-convex-polygons"]], "Other attributes and methods": [[142, "other-attributes-and-methods"]], "ds": [[142, "ds"]], "slu": [[142, "slu"]], "bounding_box": [[142, "bounding-box"]], "mask_outside": [[142, "mask-outside"]], "read and write, and instantiating from a file": [[142, "read-and-write-and-instantiating-from-a-file"]], "make_kml": [[142, "make-kml"]], "A GeoClaw AMR flag region": [[142, "a-geoclaw-amr-flag-region"]], "A simple rectangle": [[142, "a-simple-rectangle"]], "Defining a Ruled Rectangle covering selected cells": [[142, "defining-a-ruled-rectangle-covering-selected-cells"]], "Example covering the continental shelf": [[142, "example-covering-the-continental-shelf"]], "Setting sea_level": [[143, "setting-sea-level"]], "Set Eta Init \u2013 spatially varying initial surface elevation": [[144, "set-eta-init-spatially-varying-initial-surface-elevation"]], "Default behavior, adjusting sea level by seismic deformation": [[144, "default-behavior-adjusting-sea-level-by-seismic-deformation"]], "Other use cases": [[144, "other-use-cases"]], "setaux default routines": [[145, "setaux-default-routines"]], "setaux routine in GeoClaw": [[145, "setaux-routine-in-geoclaw"]], "Set environment variables": [[146, "set-environment-variables"]], "CLAW": [[146, "claw"]], "FC": [[146, "fc"]], "Using setplot.py to specify the desired plots": [[147, "using-setplot-py-to-specify-the-desired-plots"]], "Plotting Data Objects": [[147, "plotting-data-objects"]], "Overview": [[147, "overview"]], "Specifying classic run-time parameters in setrun.py": [[148, "specifying-classic-run-time-parameters-in-setrun-py"]], "Input": [[148, "input"], [149, "input"]], "Output": [[148, "output"], [149, "output"]], "Run-time parameters": [[148, "run-time-parameters"], [149, "run-time-parameters"]], "Specifying AMRClaw run-time parameters in setrun.py": [[149, "specifying-amrclaw-run-time-parameters-in-setrun-py"]], "Special AMR parameters": [[149, "special-amr-parameters"]], "Debugging flags for additional printing": [[149, "debugging-flags-for-additional-printing"]], "Sample setrun.py module for AMRClaw": [[150, "sample-setrun-py-module-for-amrclaw"]], "Specifying GeoClaw parameters in setrun.py": [[151, "specifying-geoclaw-parameters-in-setrun-py"]], "Additional AMR parameters": [[151, "additional-amr-parameters"]], "General geo parameters": [[151, "general-geo-parameters"]], "Topography data file parameters": [[151, "topography-data-file-parameters"]], "qinit data file parameters": [[151, "qinit-data-file-parameters"]], "Force some cells to be initially dry": [[151, "force-some-cells-to-be-initially-dry"]], "Adjust sea level in some regions": [[151, "adjust-sea-level-in-some-regions"]], "AMR refinement region parameters": [[151, "amr-refinement-region-parameters"]], "Deprecated Fixedgrid output parameters": [[151, "deprecated-fixedgrid-output-parameters"]], "Fixed grid maximum monitoring / arrival times": [[151, "fixed-grid-maximum-monitoring-arrival-times"]], "Fixed grid output": [[151, "fixed-grid-output"]], "Storm Specification Data": [[151, "storm-specification-data"]], "Sample setrun.py module for classic Clawpack": [[152, "sample-setrun-py-module-for-classic-clawpack"]], "Saving and sharing results": [[153, "saving-and-sharing-results"]], "Making webpages of plots": [[153, "making-webpages-of-plots"]], "Sharing your results": [[153, "sharing-your-results"]], "Jupyter notebooks": [[153, "jupyter-notebooks"]], "Source terms for shallow water on the sphere": [[154, "source-terms-for-shallow-water-on-the-sphere"]], "Compiling the Sphinx documentation locally": [[155, "compiling-the-sphinx-documentation-locally"]], "src1d default routines": [[156, "src1d-default-routines"]], "src1d routine in GeoClaw": [[156, "src1d-routine-in-geoclaw"]], "src default routines": [[157, "src-default-routines"]], "src routine in GeoClaw": [[157, "src-routine-in-geoclaw"]], "Storm Specification Class and Tools": [[158, "storm-specification-class-and-tools"]], "Sources for Storm Surge Data": [[159, "sources-for-storm-surge-data"]], "Timing Statistics": [[161, "timing-statistics"]], "Topography data": [[162, "topography-data"]], "Downloading topography files": [[162, "downloading-topography-files"]], "NetCDF format": [[162, "netcdf-format"]], "Topography displacement files": [[162, "topography-displacement-files"]], "qinit data file": [[162, "qinit-data-file"]], "Python tools for working with topo and dtopo": [[163, "python-tools-for-working-with-topo-and-dtopo"]], "topotools module for working with topography data": [[164, "topotools-module-for-working-with-topography-data"]], "Troubleshooting Installation": [[165, "troubleshooting-installation"]], "Troubleshooting Fortran:": [[165, "troubleshooting-fortran"]], "Setting the Fortran compiler to be used by f2py (pip)": [[165, "setting-the-fortran-compiler-to-be-used-by-f2py-pip"]], "Trouble compiling Fortran code at the command line": [[165, "trouble-compiling-fortran-code-at-the-command-line"]], "Trouble running \u201cmake .exe\u201d": [[165, "trouble-running-make-exe"]], "Trouble running \u201cmake .data\u201d": [[165, "trouble-running-make-data"]], "Trouble running \u201cmake .output\u201d": [[165, "trouble-running-make-output"]], "Trouble running \u201cmake .plots\u201d": [[165, "trouble-running-make-plots"]], "Some sources of tsunami data": [[166, "some-sources-of-tsunami-data"]], "Topography / bathymetry": 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"clawpack.geoclaw.dtopotools.SubFault.Mo"]], "mw() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.Mw"]], "mw() (in module clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.Mw"]], "siftfault (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.SiftFault"]], "subfault (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.SubFault"]], "subfault1d (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.SubFault1d"]], "subdividedplanefault (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.SubdividedPlaneFault"]], "tensorproductfault (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.TensorProductFault"]], "ucsbfault (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.UCSBFault"]], "calculate_geometry() (clawpack.geoclaw.dtopotools.subfault method)": [[32, 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"okada() (clawpack.geoclaw.dtopotools.subfault method)": [[32, "clawpack.geoclaw.dtopotools.SubFault.okada"]], "plot_dz_colors() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.plot_dZ_colors"]], "plot_dz_colors() (in module clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.plot_dZ_colors"]], "plot_dz_contours() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.plot_dZ_contours"]], "plot_dz_contours() (in module clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.plot_dZ_contours"]], "plot_subfaults() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.plot_subfaults"]], "plot_subfaults_depth() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.plot_subfaults_depth"]], "rake (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rake"]], "rake (clawpack.geoclaw.dtopotools.subfault1d attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault1d.rake"]], "read() (clawpack.geoclaw.dtopotools.csvfault method)": [[32, "clawpack.geoclaw.dtopotools.CSVFault.read"]], "read() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.read"]], "read() (clawpack.geoclaw.dtopotools.dtopography1d method)": [[32, "clawpack.geoclaw.dtopotools.DTopography1d.read"]], "read() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.read"]], "read() (clawpack.geoclaw.dtopotools.ucsbfault method)": [[32, "clawpack.geoclaw.dtopotools.UCSBFault.read"]], "rise_fraction() (in module clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.rise_fraction"]], "rise_shape (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rise_shape"]], "rise_time (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rise_time"]], "rise_time_starting (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rise_time_starting"]], "rupture_time (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rupture_time"]], "rupture_type (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rupture_type"]], "set_corners() (clawpack.geoclaw.dtopotools.subfault method)": [[32, "clawpack.geoclaw.dtopotools.SubFault.set_corners"]], "set_dynamic_slip() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.set_dynamic_slip"]], "set_subfaults() (clawpack.geoclaw.dtopotools.siftfault method)": [[32, "clawpack.geoclaw.dtopotools.SiftFault.set_subfaults"]], "slip (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.slip"]], "strike (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.strike"]], "strike (clawpack.geoclaw.dtopotools.subfault1d attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault1d.strike"]], "strike_direction() (in module clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.strike_direction"]], "subdivide() (clawpack.geoclaw.dtopotools.subdividedplanefault method)": [[32, "clawpack.geoclaw.dtopotools.SubdividedPlaneFault.subdivide"]], "width (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.width"]], "write() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.write"]], "write() (clawpack.geoclaw.dtopotools.dtopography1d method)": [[32, "clawpack.geoclaw.dtopotools.DTopography1d.write"]], "write() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.write"]], "fgmaxgrid (class in clawpack.geoclaw.fgmax_tools)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid"]], "adjust_fgmax_1d() (in module clawpack.geoclaw.fgmax_tools)": [[35, "clawpack.geoclaw.fgmax_tools.adjust_fgmax_1d"]], "bounding_box() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.bounding_box"]], "clawpack.geoclaw.fgmax_tools": [[35, "module-clawpack.geoclaw.fgmax_tools"]], "interp_dz() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.interp_dz"]], "ps4_to_arrays() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.ps4_to_arrays"]], "read_fgmax_grids_data() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.read_fgmax_grids_data"]], "read_output() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.read_output"]], "write_to_fgmax_data() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.write_to_fgmax_data"]], "b (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.B"]], "fgoutframe (class in clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame"]], "fgoutgrid (class in clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid"]], "x (clawpack.geoclaw.fgout_tools.fgoutgrid property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.X"], [37, "clawpack.geoclaw.fgout_tools.FGoutGrid.x"]], "y (clawpack.geoclaw.fgout_tools.fgoutgrid property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.Y"], [37, "clawpack.geoclaw.fgout_tools.FGoutGrid.y"]], "clawpack.geoclaw.fgout_tools": [[37, "module-clawpack.geoclaw.fgout_tools"]], "eta (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.eta"]], "extent_centers (clawpack.geoclaw.fgout_tools.fgoutgrid property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.extent_centers"]], "extent_edges (clawpack.geoclaw.fgout_tools.fgoutgrid property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.extent_edges"]], "get_as_array() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.get_as_array"]], "h (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.h"]], "hss (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.hss"]], "hu (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.hu"]], "hv (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.hv"]], "make_fgout_fcn_xy() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.make_fgout_fcn_xy"]], "make_fgout_fcn_xyt() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.make_fgout_fcn_xyt"]], "print_netcdf_info() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.print_netcdf_info"]], "read_fgout_grids_data() (clawpack.geoclaw.fgout_tools.fgoutgrid method)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.read_fgout_grids_data"]], "read_frame() (clawpack.geoclaw.fgout_tools.fgoutgrid method)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.read_frame"]], "read_netcdf() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.read_netcdf"]], "read_netcdf_arrays() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.read_netcdf_arrays"]], "s (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.s"]], "set_plotdata() (clawpack.geoclaw.fgout_tools.fgoutgrid method)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.set_plotdata"]], "u (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.u"]], "v (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.v"]], "write_netcdf() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.write_netcdf"]], "write_to_fgout_data() (clawpack.geoclaw.fgout_tools.fgoutgrid method)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.write_to_fgout_data"]], "bearing() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.bearing"]], "clawpack.geoclaw.util": [[51, "module-clawpack.geoclaw.util"]], "dist_latlong2meters() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.dist_latlong2meters"]], "dist_meters2latlong() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.dist_meters2latlong"]], "dms2decimal() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.dms2decimal"]], "fetch_noaa_tide_data() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.fetch_noaa_tide_data"]], "gctransect() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.gctransect"]], "haversine() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.haversine"]], "inv_haversine() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.inv_haversine"]], "box2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.box2kml"]], "clawpack.geoclaw.kmltools": [[63, "module-clawpack.geoclaw.kmltools"]], "deg2dms() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.deg2dms"]], "dtopo2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.dtopo2kml"]], "f2s() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.f2s"]], "fgmax2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.fgmax2kml"]], "fgout2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.fgout2kml"]], "gauges2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.gauges2kml"]], "kml_build_colorbar() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.kml_build_colorbar"]], "kml_cb() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.kml_cb"]], "kml_png() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.kml_png"]], "kml_timespan() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.kml_timespan"]], "line2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.line2kml"]], "make_input_data_kmls() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.make_input_data_kmls"]], "pcolorcells_for_kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.pcolorcells_for_kml"]], "png2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.png2kml"]], "poly2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.poly2kml"]], "quad2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.quad2kml"]], "regions2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.regions2kml"]], "topo2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.topo2kml"]], "topo2kmz() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.topo2kmz"]], "transect2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.transect2kml"]], "controller (class in clawpack.pyclaw.controller)": [[91, "clawpack.pyclaw.controller.Controller"]], "f_file_name (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.F_file_name"]], "f_path (clawpack.pyclaw.controller.controller property)": [[91, "clawpack.pyclaw.controller.Controller.F_path"]], "check_validity() (clawpack.pyclaw.controller.controller method)": [[91, "clawpack.pyclaw.controller.Controller.check_validity"]], "compute_f (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.compute_F"]], "compute_p 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(clawpack.pyclaw.controller.controller property)": [[91, "clawpack.pyclaw.controller.Controller.outdir_p"]], "output_file_prefix (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.output_file_prefix"]], "output_format (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.output_format"]], "output_options (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.output_options"]], "output_style (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.output_style"]], "overwrite (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.overwrite"]], "plot() (clawpack.pyclaw.controller.controller method)": [[91, "clawpack.pyclaw.controller.Controller.plot"]], "plotdata (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.plotdata"]], "run() (clawpack.pyclaw.controller.controller method)": [[91, "clawpack.pyclaw.controller.Controller.run"]], "rundir (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.rundir"]], "runmake (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.runmake"]], "savecode (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.savecode"]], "solver (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.solver"]], "tfinal (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.tfinal"]], "verbosity (clawpack.pyclaw.controller.controller property)": [[91, "clawpack.pyclaw.controller.Controller.verbosity"]], "viewable_attributes (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.viewable_attributes"]], "write_aux_always (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.write_aux_always"]], "write_aux_init (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.write_aux_init"]], "xclawcmd (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.xclawcmd"]], "xclawerr (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.xclawerr"]], "xclawout (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.xclawout"]], "xdir (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.xdir"]], "arora_roe() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.arora_roe"]], "beta_limiter() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.beta_limiter"]], "cada_torrilhon_limiter() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.cada_torrilhon_limiter"]], "cada_torrilhon_limiter_nonlinear() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.cada_torrilhon_limiter_nonlinear"]], "cfl_superbee() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.cfl_superbee"]], "cfl_superbee_theta() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.cfl_superbee_theta"]], "clawpack.pyclaw.limiters.tvd": [[92, "module-clawpack.pyclaw.limiters.tvd"]], "hyperbee_limiter() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.hyperbee_limiter"]], "limit() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.limit"]], "mc_limiter() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.mc_limiter"]], "minmod_limiter() (in module clawpack.pyclaw.limiters.tvd)": [[92, 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77, 81, 94, 97, 99, 104, 125, 130, 135, 149, 150, 152, 154, 162, 164], "facecolor": [2, 82, 118, 136, 147], "background": [2, 81, 127, 147], "behind": [2, 42, 70, 144, 151], "By": [2, 15, 32, 44, 49, 51, 55, 57, 63, 75, 82, 84, 88, 94, 98, 100, 107, 127, 142, 145, 156, 157, 164, 170], "theme": 2, "tan": [2, 82], "public": [2, 4, 13, 17, 23, 138], "probabl": [2, 13, 30, 55, 68, 70, 110, 111], "w": [2, 17, 51, 140, 170], "white": [2, 63, 118], "keyword": [2, 3, 82, 88, 93, 94, 97, 103, 109, 116, 127, 147, 158, 164], "12": [2, 34, 42, 55, 70, 82, 142, 147], "5": [2, 4, 5, 8, 9, 11, 13, 18, 19, 21, 27, 32, 34, 35, 36, 37, 41, 42, 45, 47, 49, 51, 55, 56, 57, 58, 59, 63, 64, 66, 67, 68, 70, 75, 82, 92, 94, 98, 99, 101, 102, 104, 110, 111, 115, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 148, 149, 150, 151, 152, 158, 161, 162, 164, 169], "would": [2, 3, 12, 13, 16, 26, 29, 30, 34, 36, 41, 44, 55, 57, 59, 62, 64, 66, 67, 70, 72, 75, 77, 82, 86, 88, 91, 94, 98, 109, 116, 125, 142, 143, 144, 147, 148, 151, 158, 162, 167], "inch": [2, 55, 63, 82, 147], "red": [2, 3, 30, 47, 63, 82, 116, 147], "option": [2, 12, 13, 16, 19, 22, 24, 27, 30, 31, 32, 34, 36, 37, 38, 39, 43, 44, 51, 54, 57, 60, 62, 66, 71, 77, 81, 82, 88, 89, 91, 93, 94, 95, 97, 98, 100, 103, 104, 105, 108, 109, 111, 112, 115, 116, 118, 120, 123, 124, 125, 128, 130, 133, 135, 137, 142, 146, 147, 148, 150, 151, 152, 153, 158, 164], "clf_each_fram": 2, "clf": 2, "axes1": [2, 84], "shown": [3, 13, 18, 19, 58, 63, 67, 68, 71, 78, 98, 118, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 142, 164, 167], "fragment": 3, "typic": [3, 22, 42, 66, 67, 71, 72, 75, 77, 78, 84, 89, 99, 101, 104, 106, 115, 149, 150, 161, 162, 165, 166, 167, 170], "assum": [3, 5, 22, 24, 32, 34, 36, 37, 39, 42, 49, 51, 52, 55, 57, 58, 59, 63, 71, 75, 81, 97, 98, 100, 101, 102, 108, 109, 115, 123, 136, 142, 143, 148, 151, 158, 159, 162, 164, 166, 170], "instanc": [3, 30, 37, 55, 75, 78, 84, 88, 89, 91, 94, 97, 98, 101, 142, 151], "type": [3, 4, 7, 13, 17, 18, 22, 30, 32, 38, 39, 43, 47, 48, 55, 66, 71, 82, 83, 84, 88, 89, 90, 92, 94, 97, 99, 100, 104, 105, 108, 109, 142, 149, 150, 151, 158, 159, 162, 164, 170], "dimension": [3, 7, 8, 17, 19, 24, 27, 32, 34, 36, 38, 39, 47, 49, 52, 56, 71, 94, 101, 123, 124, 126, 129, 150, 151, 152, 164, 167], "point": [3, 5, 6, 13, 15, 16, 17, 22, 30, 32, 35, 36, 38, 39, 41, 42, 44, 47, 48, 49, 50, 51, 52, 55, 57, 58, 59, 61, 62, 63, 64, 71, 72, 75, 88, 98, 99, 103, 109, 110, 111, 115, 118, 126, 128, 130, 136, 139, 140, 142, 143, 144, 145, 146, 148, 149, 150, 151, 156, 157, 158, 162, 164, 165, 167], "slice": [3, 49, 71, 140], "scatter": [3, 24, 71], "radial": [3, 18, 34, 49, 51, 151, 167], "symmetr": [3, 49, 51, 167], "between": [3, 4, 5, 6, 13, 16, 25, 27, 30, 32, 33, 34, 36, 37, 41, 51, 55, 59, 63, 70, 71, 72, 75, 76, 78, 81, 91, 94, 98, 104, 106, 107, 109, 110, 111, 115, 118, 124, 125, 140, 142, 143, 148, 149, 150, 151, 152, 153, 154, 161, 162, 164, 166, 167], "plot_var": [3, 29, 47, 55, 82, 83], "fill_var2": 3, "diment": 3, "raster": [3, 55, 57, 135, 162], "contour": [3, 32, 47, 55, 57, 71, 110, 147, 164], "pcolor": [3, 47, 81, 110, 118, 135, 164], "2d_schlieren": 3, "schlieren": [3, 71], "2d_patch": [3, 24], "cell": [3, 4, 5, 7, 8, 15, 16, 18, 19, 22, 24, 27, 29, 34, 35, 36, 37, 47, 48, 49, 55, 57, 63, 70, 71, 72, 76, 77, 78, 88, 94, 97, 99, 102, 104, 106, 108, 115, 119, 120, 124, 125, 126, 127, 128, 129, 130, 132, 136, 140, 143, 144, 145, 148, 149, 150, 152, 154, 159, 161, 162, 167, 170], "patch": [3, 6, 7, 16, 19, 24, 29, 34, 42, 55, 71, 75, 76, 77, 81, 82, 97, 99, 103, 106, 115, 125, 127, 130, 132, 144, 147, 149, 161, 162, 167], "edg": [3, 6, 15, 16, 19, 29, 32, 34, 35, 36, 37, 41, 49, 63, 75, 94, 102, 140, 142, 145, 149, 150, 152, 167], "hillshad": [3, 118], "come": [3, 30, 82, 84, 93, 99, 104, 123, 162, 167], "parent": [3, 29, 94, 106, 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44, 47, 48, 49, 52, 57, 58, 59, 61, 62, 63, 64, 71, 73, 77, 82, 84, 94, 97, 98, 99, 104, 106, 109, 111, 115, 116, 118, 124, 126, 127, 137, 139, 143, 147, 148, 149, 150, 151, 152, 154, 158, 159, 162, 164, 166], "afteritem": [3, 29], "afterpatch": [3, 29], "There": [3, 6, 13, 24, 36, 39, 43, 55, 58, 59, 66, 70, 75, 77, 84, 85, 98, 105, 113, 126, 127, 147, 148, 154, 159, 160, 167, 169], "calcul": [3, 5, 6, 18, 19, 29, 32, 35, 37, 48, 51, 71, 75, 82, 94, 102, 104, 118, 120, 125, 164], "cd": [3, 13, 30, 38, 39, 40, 56, 58, 59, 61, 62, 84, 93, 96, 99, 105, 116, 160], "On": [3, 5, 13, 55, 76, 85, 126, 136, 142, 146, 167], "ylower": [3, 24, 29, 42, 89, 127, 150, 162, 164], "patchno": [3, 29], "out": [3, 16, 17, 26, 28, 31, 32, 34, 36, 37, 38, 39, 42, 47, 48, 49, 54, 56, 57, 58, 59, 62, 63, 64, 65, 66, 71, 75, 82, 85, 86, 88, 89, 91, 97, 98, 99, 100, 103, 108, 110, 111, 113, 116, 125, 127, 129, 130, 140, 142, 149, 150, 152, 158, 164, 165], "lower": [3, 24, 32, 34, 35, 41, 49, 57, 70, 77, 94, 99, 142, 144, 148, 150, 152, 162, 164, 166], "left": [3, 5, 10, 13, 16, 20, 27, 29, 32, 34, 57, 77, 84, 94, 101, 102, 108, 118, 126, 132, 135, 136, 137, 138, 139, 140, 143, 149, 162, 164, 166, 170], "mappedgrid": [3, 71], "map": [3, 16, 18, 31, 32, 42, 48, 63, 70, 71, 82, 86, 89, 94, 96, 101, 115, 123, 127, 132, 141, 164, 170], "mapc2p": [3, 27, 29, 49, 71, 89, 94, 132], "underli": [3, 55, 125], "requir": [3, 4, 16, 18, 19, 22, 24, 27, 29, 30, 32, 34, 36, 37, 38, 39, 43, 48, 49, 51, 52, 59, 62, 70, 71, 75, 78, 81, 84, 85, 88, 89, 94, 97, 100, 101, 104, 105, 106, 108, 109, 110, 115, 116, 118, 119, 120, 123, 125, 128, 130, 132, 135, 137, 140, 141, 142, 147, 148, 149, 150, 151, 152, 158, 159, 162, 165, 168, 170], "depend": [3, 13, 16, 30, 31, 32, 34, 37, 38, 39, 43, 44, 50, 52, 55, 66, 68, 71, 75, 82, 87, 97, 102, 103, 104, 109, 111, 115, 127, 144, 149, 151, 164, 165, 167, 170], "summar": [3, 30, 33, 115, 117, 167], "plotstyl": [3, 47, 82, 147], "anyth": [3, 6, 30, 31, 62, 67, 116, 127], "valid": [3, 52, 75, 91, 98, 103, 106, 125, 151, 158, 159, 164], "fmt": 3, "group": [3, 13, 26, 30, 32, 52, 93, 97, 99, 107, 124, 140], "solid": [3, 16, 55, 75, 101, 147, 148, 150, 152], "dash": [3, 99], "o": [3, 5, 17, 41, 42, 43, 70, 72, 82, 85, 86, 89, 97, 98, 107, 127, 150, 164, 167], "circl": [3, 51, 82, 118], "bo": 3, "blue": [3, 11, 42, 47, 63, 70, 82, 142, 164], "though": [3, 42, 78, 158, 162], "also": [3, 4, 5, 6, 7, 8, 9, 11, 12, 16, 17, 18, 19, 20, 22, 24, 25, 26, 27, 30, 31, 32, 34, 35, 36, 37, 38, 39, 40, 41, 42, 44, 45, 46, 47, 48, 49, 51, 52, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 66, 67, 70, 71, 75, 76, 77, 78, 81, 82, 84, 88, 90, 91, 94, 96, 97, 98, 99, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 118, 119, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 146, 148, 149, 150, 151, 152, 153, 156, 157, 158, 159, 160, 161, 162, 164, 165, 166, 167, 169, 170], "overrul": 3, "r": [3, 4, 6, 17, 30, 47, 51, 56, 58, 70, 71, 74, 82, 88, 92, 99, 101, 118, 140, 142, 147, 164, 170], "ff0000": [3, 63], "No": [3, 43, 55, 59, 71, 94, 104, 133, 140, 148, 151, 165], "extra": [3, 55, 141], "give": [3, 6, 9, 10, 13, 16, 17, 18, 19, 26, 30, 32, 34, 35, 36, 38, 39, 47, 49, 56, 63, 64, 70, 72, 75, 76, 77, 82, 84, 99, 100, 104, 116, 120, 124, 125, 129, 132, 142, 148, 151, 162, 164, 166], "polygon": [3, 7, 41, 55, 63, 130, 164], "curv": [3, 47, 81, 142], "fill_between": 3, "plot_var2": 3, "zero": [3, 16, 32, 34, 42, 44, 47, 63, 71, 72, 88, 101, 102, 106, 108, 132, 142, 143], "fill_wher": 3, "plotitem": [3, 29, 47, 82, 147], "mean": [3, 13, 24, 30, 34, 42, 47, 52, 56, 62, 71, 72, 98, 99, 115, 118, 140, 143, 148, 150, 152, 166], "map_2d_to_1d": 3, "In": [3, 5, 6, 8, 11, 12, 15, 16, 18, 19, 21, 22, 24, 29, 32, 34, 36, 41, 44, 47, 48, 49, 52, 55, 56, 57, 58, 59, 62, 63, 64, 66, 67, 70, 71, 72, 74, 75, 77, 78, 82, 83, 84, 88, 89, 94, 96, 97, 98, 99, 100, 101, 102, 104, 106, 109, 111, 112, 113, 115, 118, 119, 120, 123, 124, 125, 127, 128, 132, 136, 139, 140, 142, 144, 145, 146, 148, 149, 151, 156, 157, 162, 164, 165, 167, 170], "about": [3, 5, 7, 13, 14, 16, 18, 19, 24, 27, 35, 36, 37, 38, 39, 43, 49, 51, 52, 57, 59, 63, 66, 68, 71, 77, 83, 85, 88, 96, 97, 99, 104, 111, 116, 124, 128, 130, 135, 136, 140, 147, 149, 150, 151, 162, 165, 167, 170], "j": [3, 4, 5, 15, 17, 22, 24, 29, 35, 42, 56, 63, 70, 71, 77, 84, 96, 97, 115, 119, 120, 144, 145], "v": [3, 16, 27, 31, 32, 34, 36, 37, 51, 64, 67, 116, 124, 149, 162], "radiu": [3, 151, 158, 159, 164], "q0_vs_radiu": 3, "convert": [3, 24, 27, 32, 35, 37, 45, 51, 55, 62, 63, 66, 75, 78, 89, 96, 101, 109, 110, 127, 130, 136, 137, 148, 149, 158, 162, 166], "numpi": [3, 13, 32, 34, 36, 37, 42, 51, 70, 85, 87, 88, 89, 91, 94, 101, 106, 107, 108, 110, 116, 137, 141, 142, 150, 164, 165], "sqrt": [3, 34, 37, 49, 68, 88, 101, 102, 108, 150], "q0": [3, 101], "work": [3, 5, 8, 13, 16, 19, 21, 22, 24, 26, 27, 28, 30, 31, 34, 36, 38, 39, 43, 48, 52, 55, 56, 57, 58, 59, 60, 61, 62, 63, 70, 71, 74, 75, 76, 82, 85, 86, 87, 88, 90, 91, 92, 96, 97, 98, 99, 102, 104, 105, 110, 111, 113, 114, 115, 116, 118, 121, 122, 123, 124, 125, 126, 127, 130, 132, 133, 138, 140, 146, 147, 148, 149, 153, 159, 162, 165, 169], "symbol": [3, 71, 111], "best": [3, 4, 16, 24, 28, 30, 36, 44, 49, 55, 57, 59, 60, 66, 72, 74, 76, 81, 82, 97, 101, 113, 114, 115, 116, 127, 138, 140, 151, 155, 158, 162, 167], "descript": [3, 4, 6, 9, 24, 25, 27, 32, 36, 37, 63, 71, 75, 78, 81, 96, 97, 109, 113, 115, 137, 140, 141, 151, 158, 162, 170], "celledges_show": [3, 24], "draw": 3, "amr_celledges_show": 3, "level": [3, 6, 7, 16, 19, 25, 29, 31, 34, 36, 41, 42, 47, 48, 50, 51, 52, 55, 58, 59, 61, 62, 71, 72, 76, 77, 89, 91, 94, 96, 97, 98, 104, 111, 112, 115, 116, 119, 120, 124, 125, 127, 130, 139, 142, 143, 146, 148, 149, 150, 152, 161, 162, 164, 166, 167], "patchedges_show": [3, 24], "mostli": [3, 81, 96, 130, 137], "contour_level": [3, 164], "three": [3, 13, 17, 24, 32, 34, 37, 52, 55, 67, 71, 75, 99, 103, 109, 116, 142, 148, 151, 162, 164, 167], "contour_nlevel": 3, "contour_min": 3, "minimum": [3, 19, 34, 47, 55, 75, 108, 125, 151, 164], "contour_max": 3, "maximum": [3, 24, 32, 34, 35, 36, 48, 71, 72, 104, 108, 115, 119, 120, 127, 130, 148, 149, 150, 152, 158, 159], "contour_color": 3, "specif": [3, 5, 12, 19, 24, 30, 32, 47, 48, 49, 51, 55, 56, 62, 65, 67, 68, 77, 86, 87, 89, 91, 96, 97, 98, 102, 103, 109, 113, 125, 126, 127, 130, 147, 148, 149, 150, 152, 159, 162], "b": [3, 5, 17, 30, 32, 34, 35, 36, 37, 42, 47, 49, 56, 58, 59, 68, 72, 82, 104, 115, 123, 130, 142, 143, 144, 151, 164, 166], "0000ff": [3, 63], "colormap": [3, 32, 42, 50, 55, 70, 71, 81, 83, 124, 130, 164], "amr_contour_color": 3, "As": [3, 18, 19, 39, 42, 48, 49, 52, 58, 59, 63, 64, 88, 108, 110, 114, 118, 119, 130, 140, 141, 144, 151, 154, 160, 167], "black": [3, 47], "subsequ": [3, 10, 71], "both": [3, 16, 18, 19, 30, 32, 35, 36, 37, 38, 39, 41, 42, 47, 52, 57, 60, 62, 67, 70, 71, 75, 77, 89, 97, 98, 99, 104, 105, 115, 116, 123, 124, 127, 130, 135, 140, 141, 142, 144, 148, 149, 150, 152, 156, 162, 167], "fine": [3, 19, 34, 35, 36, 42, 49, 58, 74, 78, 96, 101, 115, 118, 125, 132, 142, 144, 148, 149, 151, 162, 167], "coars": [3, 34, 36, 55, 115, 118, 125, 132, 148, 162, 167], "anoth": [3, 19, 24, 34, 36, 42, 47, 51, 55, 62, 63, 77, 81, 85, 93, 104, 107, 116, 127, 158, 167], "refin": [3, 4, 5, 7, 8, 17, 19, 24, 36, 48, 49, 52, 55, 56, 57, 70, 71, 77, 78, 88, 125, 127, 128, 130, 132, 142, 144, 147, 148, 149, 150, 161, 162, 167], "region": [3, 6, 7, 13, 16, 19, 24, 34, 36, 41, 42, 48, 52, 53, 55, 63, 68, 72, 75, 78, 113, 118, 127, 130, 132, 143, 144, 149, 150, 154, 162, 164], "lack": 3, "hidden": [3, 66, 82], "blank": [3, 35, 63, 158], "coarser": [3, 16, 19, 57, 125, 144, 148, 149, 167], "easili": [3, 13, 30, 34, 55, 58, 71, 82, 89, 94, 105, 109, 116, 118, 130, 153], "contour_show": 3, "commonli": [3, 19, 71, 82, 84], "amr_contour_show": 3, "determin": 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19, 24, 49, 52, 55, 59, 60, 63, 75, 82, 86, 89, 97, 98, 99, 100, 101, 104, 116, 118, 120, 124, 135, 142, 144, 148, 159, 162], "confus": [3, 57, 62, 111, 132, 140], "add_colorbar": [3, 32, 164], "ad": [3, 12, 16, 22, 24, 26, 27, 29, 31, 34, 36, 37, 44, 47, 51, 57, 58, 59, 62, 63, 64, 68, 71, 72, 75, 82, 87, 89, 92, 94, 95, 98, 99, 111, 112, 113, 115, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 133, 135, 136, 137, 139, 144, 148, 149, 151, 154, 158, 161, 164, 168], "imshow_cmap": 3, "imshow_cmin": 3, "imshow_cmax": 3, "hillshade_vertical_exagger": 3, "vertic": [3, 32, 41, 52, 55, 63, 70, 142, 143, 151, 164, 166], "exagger": 3, "calul": 3, "hillshade_azimuth_degre": 3, "light": [3, 55, 71, 115], "sourc": [3, 4, 17, 18, 19, 25, 27, 30, 32, 44, 48, 49, 55, 56, 58, 59, 61, 62, 63, 65, 67, 68, 81, 86, 89, 93, 94, 95, 104, 105, 107, 108, 109, 113, 114, 116, 118, 125, 126, 127, 136, 137, 141, 143, 148, 150, 151, 152, 155, 156, 157, 158, 162], "azimuth": 3, "angl": [3, 16, 32, 51, 75], "315": 3, "northwest": 3, "360": [3, 51, 55, 75], "degre": [3, 32, 49, 51, 55, 63, 72, 75], "clockwis": [3, 34, 51, 75, 164], "north": [3, 34, 42, 49, 51, 70, 75], "recommend": [3, 4, 18, 19, 32, 34, 36, 38, 39, 58, 59, 60, 62, 76, 81, 90, 94, 96, 97, 99, 100, 104, 105, 107, 108, 115, 127, 135, 137, 148, 150, 152, 168], "proper": [3, 6, 15, 42, 47, 56, 57, 58, 59, 63, 68, 70, 71, 97, 109, 119, 125, 145, 149, 150, 156, 157, 158, 167], "interpret": [3, 32, 57, 75, 97, 127, 162], "peopl": [3, 4, 12, 13, 86], "hillshade_altitude_degre": 3, "altitud": 3, "horizon": 3, "45": [3, 104], "90": [3, 27, 32, 49, 55, 67, 75, 105, 107, 136], "hillshade_latlon": 3, "correct": [3, 18, 19, 22, 30, 44, 58, 59, 67, 68, 71, 82, 88, 94, 97, 99, 103, 109, 119, 120, 124, 144, 148, 150, 151, 152], "unit": [3, 32, 49, 50, 51, 56, 75, 94, 125, 136, 158], "z": [3, 42, 57, 63, 70, 71, 88, 94, 102, 108, 142, 148, 149, 162, 164], "111200": 3, "reflect": [3, 4, 5, 16, 30, 115, 127, 148, 150, 152], "relat": [3, 7, 19, 24, 26, 58, 78, 102, 113, 126, 130, 132, 143], "pre": [3, 13, 35, 59, 90, 97], "pend": 3, "amr_": [3, 7], "whose": [3, 49, 82, 89, 101, 102, 144, 148, 149, 164], "origin": [3, 6, 13, 16, 18, 19, 22, 30, 32, 36, 37, 45, 47, 56, 58, 63, 70, 76, 77, 89, 104, 109, 119, 125, 132, 139, 149, 150, 151, 152, 164], "hand": [3, 5, 19, 20, 21, 22, 68, 88, 116, 118, 135, 136, 137, 142], "higher": [3, 6, 18, 19, 55, 94, 104, 105, 115, 130, 140, 142, 143, 144], "shorter": [3, 115, 164], "last": [3, 20, 29, 34, 36, 59, 61, 82, 88, 89, 101, 108, 118, 124, 135, 136, 137, 148, 158], "repeatedli": [3, 99, 105, 149], "finer": [3, 7, 19, 34, 55, 115, 119, 120, 142, 148, 149], "celledg": [3, 32, 49], "colorbar_shrink": [3, 32], "colorbar_label": 3, "colorbar_tick": 3, "colorbar_tick_label": 3, "colorbar_extend": [3, 136], "colorbar_kwarg": [3, 127], "stand": [4, 132], "conserv": [4, 5, 6, 17, 18, 19, 98, 104, 106, 128, 141, 167, 170], "law": [4, 17, 63, 151, 170], "packag": [4, 27, 30, 31, 38, 39, 55, 59, 60, 67, 77, 78, 81, 85, 86, 88, 94, 96, 98, 100, 101, 103, 105, 108, 110, 111, 118, 129, 130, 165, 168], "wa": [4, 5, 6, 14, 19, 21, 22, 27, 31, 32, 34, 35, 36, 37, 42, 49, 52, 54, 58, 59, 66, 68, 70, 71, 75, 82, 99, 103, 104, 106, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 139, 142, 144, 161, 162, 164], "initi": [4, 5, 7, 12, 13, 18, 19, 24, 27, 32, 36, 37, 47, 48, 49, 51, 52, 55, 59, 64, 67, 71, 72, 75, 77, 78, 84, 86, 87, 88, 89, 91, 92, 94, 95, 97, 98, 102, 103, 104, 106, 107, 109, 112, 115, 124, 127, 130, 132, 140, 143, 148, 149, 150, 152, 154, 158, 162, 164], "develop": [4, 6, 7, 12, 13, 19, 20, 24, 25, 45, 52, 56, 58, 61, 62, 65, 70, 71, 81, 85, 86, 89, 96, 101, 104, 105, 111, 113, 116, 118, 127, 128, 130, 132, 135, 136, 137, 140, 143, 144, 150], "linear": [4, 5, 17, 18, 19, 32, 36, 37, 47, 49, 55, 72, 75, 82, 88, 92, 104, 118, 128, 140, 141, 142], "nonlinear": [4, 5, 17, 52, 92, 140, 148, 170], "hyperbol": [4, 5, 6, 17, 18, 19, 45, 78, 89, 96, 101, 102, 108, 140, 148, 151, 167, 170], "system": [4, 16, 17, 18, 19, 25, 39, 40, 48, 55, 56, 62, 63, 67, 76, 77, 86, 96, 97, 98, 99, 101, 102, 105, 108, 111, 116, 118, 140, 148, 150, 152, 160, 167, 170], "focu": [4, 48], "high": [4, 17, 34, 52, 55, 70, 72, 75, 78, 89, 96, 104, 140, 143, 144, 166, 167], "resolut": [4, 6, 17, 32, 34, 36, 42, 47, 64, 72, 75, 94, 104, 108, 109, 119, 123, 127, 128, 135, 140, 143, 162, 164, 166, 167], "godunov": [4, 94, 104, 148, 150, 152, 167], "method": [4, 5, 7, 17, 19, 34, 36, 37, 41, 45, 47, 57, 70, 72, 82, 84, 88, 91, 92, 94, 99, 103, 104, 109, 115, 116, 123, 140, 147, 148, 149, 150, 152, 158, 161, 162, 164, 167], "framework": [4, 86, 89, 124, 125], "applic": [4, 6, 15, 16, 18, 19, 21, 22, 24, 25, 26, 30, 31, 36, 37, 38, 39, 40, 44, 45, 46, 47, 48, 50, 59, 61, 62, 67, 70, 76, 77, 84, 93, 94, 95, 96, 98, 104, 109, 112, 114, 115, 116, 118, 119, 122, 123, 125, 126, 127, 129, 130, 140, 142, 144, 145, 148, 151, 156, 157, 162, 164, 165, 167, 168], "finit": [4, 17, 34, 36, 45, 49, 57, 63, 70, 71, 72, 75, 104, 130, 142, 151, 161, 162, 167], "volum": [4, 17, 31, 34, 36, 45, 49, 57, 63, 70, 71, 72, 96, 130, 142, 149, 151, 161, 162, 167], "riemann": [4, 5, 8, 22, 24, 25, 30, 31, 48, 59, 62, 67, 78, 86, 88, 94, 95, 104, 105, 106, 108, 111, 146, 148, 150, 152, 156, 157, 170], "solver": [4, 5, 6, 22, 24, 25, 27, 30, 48, 49, 60, 61, 62, 67, 85, 86, 87, 91, 94, 95, 98, 106, 118, 121, 123, 125, 126, 127, 128, 129, 130, 132, 137, 148, 150, 152, 156, 157, 170], "resolv": [4, 34, 36, 55, 58, 62, 113, 127, 144], "jump": [4, 5, 71, 84, 94, 104, 125, 148, 170], "discontinu": [4, 104, 170], "interfac": [4, 21, 24, 71, 86, 89, 92, 96, 97, 102, 104, 109, 140, 167, 168, 170], "wave": [4, 5, 6, 16, 17, 18, 27, 34, 42, 48, 49, 52, 55, 56, 75, 92, 94, 96, 101, 102, 104, 115, 123, 125, 126, 132, 141, 142, 143, 148, 149, 150, 151, 152, 154, 167], "propag": [4, 5, 6, 17, 18, 19, 27, 32, 49, 52, 55, 56, 75, 94, 96, 104, 115, 125, 140], "neighbor": [4, 18, 19, 36, 42, 70, 72, 115, 125, 144, 149, 150, 164], "formul": [4, 5, 19, 52, 68, 140, 148], "allow": [4, 6, 13, 24, 29, 30, 31, 34, 36, 37, 41, 42, 47, 48, 51, 54, 55, 57, 58, 62, 68, 70, 71, 75, 76, 78, 81, 82, 91, 96, 97, 98, 104, 106, 109, 110, 111, 115, 116, 119, 120, 123, 124, 125, 126, 127, 129, 130, 132, 135, 136, 137, 140, 142, 148, 150, 151, 152, 153, 158, 162, 164, 166], "easi": [4, 6, 11, 31, 41, 62, 71, 89, 98, 99, 100, 142, 153, 167], "extens": [4, 17, 19, 24, 26, 30, 32, 52, 55, 58, 62, 67, 71, 89, 96, 97, 109, 125, 126, 132, 148, 160, 164, 170], "problem": [4, 5, 7, 16, 17, 18, 19, 22, 26, 27, 29, 30, 31, 38, 39, 42, 45, 48, 49, 62, 66, 70, 71, 72, 75, 78, 82, 85, 87, 88, 93, 95, 96, 99, 102, 104, 107, 111, 116, 119, 120, 122, 123, 126, 130, 132, 136, 137, 140, 142, 144, 148, 149, 150, 151, 152, 153, 154, 161, 165], "algorithm": [4, 7, 19, 27, 34, 41, 42, 48, 56, 88, 94, 96, 97, 104, 108, 115, 127, 140, 142, 148, 150, 152, 164], "brief": [4, 59, 141, 151], "subroutin": [4, 6, 9, 16, 24, 34, 36, 67, 115, 123, 140, 148, 149, 161, 167, 170], "equat": [4, 5, 16, 17, 18, 27, 38, 39, 48, 49, 52, 64, 68, 82, 87, 88, 89, 91, 96, 97, 98, 101, 104, 105, 106, 118, 120, 123, 125, 127, 128, 140, 148, 150, 151, 152, 154, 162, 167, 170], "solv": [4, 5, 8, 16, 17, 18, 19, 22, 28, 38, 39, 49, 52, 60, 62, 64, 87, 89, 91, 94, 96, 101, 102, 105, 118, 128, 140, 141, 148, 162, 167, 170], "adapt": [4, 7, 17, 19, 32, 42, 49, 56, 57, 70, 71, 78, 88, 115, 127, 130, 132, 140, 142, 147, 148, 149, 151, 167], "mesh": [4, 7, 17, 19, 35, 49, 56, 70, 71, 78, 81, 88, 115, 130, 147, 148, 167], "amrclaw": [4, 5, 6, 12, 15, 16, 19, 21, 22, 24, 25, 26, 30, 38, 39, 41, 42, 44, 46, 47, 48, 50, 56, 59, 60, 61, 62, 64, 70, 71, 76, 77, 78, 85, 96, 97, 105, 111, 112, 115, 116, 139, 140, 142, 145, 146, 148, 151, 156, 157, 160, 161, 165], "detail": [4, 5, 10, 16, 24, 25, 27, 28, 30, 31, 32, 34, 36, 38, 39, 41, 44, 47, 50, 52, 55, 58, 61, 62, 64, 65, 66, 70, 71, 75, 78, 82, 86, 91, 92, 93, 94, 96, 97, 98, 99, 100, 101, 102, 104, 114, 115, 116, 120, 125, 127, 132, 135, 140, 142, 147, 148, 151, 153, 158, 162, 165, 166, 167, 170], "content": [4, 6, 25, 37, 45, 55, 59, 77, 78, 89, 96, 151, 162, 167, 168], "routin": [4, 5, 6, 16, 18, 19, 22, 27, 29, 32, 34, 38, 39, 47, 48, 49, 50, 55, 56, 66, 71, 72, 76, 77, 78, 81, 84, 86, 89, 91, 94, 97, 100, 101, 104, 106, 107, 115, 118, 119, 120, 123, 125, 127, 128, 130, 140, 144, 148, 150, 152, 158, 164, 165, 167, 168, 170], "special": [4, 7, 16, 48, 50, 55, 65, 78, 86, 97, 115, 135, 142, 164], "depth": [4, 5, 16, 17, 18, 19, 24, 32, 34, 35, 37, 42, 47, 48, 49, 52, 68, 72, 75, 81, 83, 141, 143, 144, 151, 162], "averag": [4, 6, 15, 17, 18, 19, 34, 42, 48, 49, 52, 53, 57, 71, 72, 102, 106, 120, 132, 140, 144, 145, 162, 164, 167], "geophys": [4, 16, 17, 25, 48, 52, 78, 148], "flow": [4, 16, 17, 25, 34, 35, 48, 50, 52, 78, 96, 113, 118, 130, 135, 140, 148, 151, 162, 167], "geoclaw": [4, 7, 12, 17, 18, 19, 25, 26, 30, 31, 32, 34, 35, 36, 37, 39, 41, 44, 46, 47, 56, 57, 59, 60, 61, 62, 63, 64, 68, 70, 72, 75, 77, 78, 81, 85, 96, 105, 111, 113, 114, 116, 139, 140, 141, 143, 144, 146, 148, 149, 154, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167], "parallel": [4, 24, 25, 47, 76, 87, 93, 95, 96, 98, 101, 103, 105, 109, 115, 116, 118, 125, 149], "ten": [4, 78], "thousand": [4, 78], "core": [4, 12, 78, 116, 127, 137], "wish": [4, 13, 14, 15, 24, 31, 38, 39, 52, 55, 62, 71, 80, 81, 96, 101, 104, 105, 107, 111, 113, 115, 125, 145, 153, 156, 157, 165], "discrib": 4, "book": [4, 12, 17, 27, 31, 46, 85, 103, 140], "levequ": [4, 16, 17, 26, 32, 56, 78, 92, 94, 96, 104, 110, 140, 148, 167, 170], "fvmhp": [4, 12, 16, 17, 27, 46, 78, 140, 148, 167, 170], "virtual": [4, 13, 27, 29, 106], "were": [4, 6, 14, 19, 22, 34, 45, 47, 58, 64, 67, 71, 72, 89, 115, 118, 119, 125, 128, 132, 135, 136, 137, 142, 144, 154, 162], "4": [4, 7, 8, 9, 13, 16, 17, 25, 27, 30, 32, 34, 35, 36, 39, 41, 42, 44, 45, 47, 48, 52, 55, 57, 58, 59, 66, 67, 68, 70, 71, 72, 76, 77, 81, 82, 84, 95, 96, 97, 98, 99, 101, 102, 104, 105, 109, 111, 115, 116, 118, 119, 124, 127, 132, 133, 135, 137, 139, 142, 148, 149, 150, 151, 152, 160, 161, 162, 164, 169], "3": [4, 6, 7, 15, 16, 19, 22, 24, 26, 27, 32, 34, 35, 36, 39, 41, 45, 47, 48, 55, 57, 59, 62, 63, 68, 71, 72, 75, 77, 82, 84, 85, 88, 91, 92, 94, 97, 98, 99, 102, 103, 104, 106, 110, 111, 115, 125, 127, 130, 136, 138, 140, 142, 145, 148, 149, 150, 151, 152, 160, 161, 162, 164, 167, 170], "pointer": [4, 16, 18, 19, 58, 75, 81, 84, 104, 109, 123], "code": [4, 5, 6, 7, 8, 12, 14, 16, 21, 22, 23, 24, 25, 26, 29, 31, 34, 35, 36, 37, 38, 39, 41, 43, 44, 45, 47, 48, 49, 52, 54, 56, 57, 58, 60, 65, 66, 67, 68, 74, 75, 76, 77, 78, 80, 82, 84, 85, 86, 88, 89, 94, 96, 97, 98, 99, 101, 104, 105, 108, 110, 111, 114, 117, 118, 119, 120, 123, 124, 125, 126, 127, 128, 129, 130, 132, 137, 139, 140, 141, 142, 146, 148, 149, 150, 151, 152, 153, 158, 160, 161, 162], "bibliographi": [4, 27], "paper": [4, 5, 6, 16, 19, 32, 48, 58, 92, 96], "distribut": [4, 12, 13, 31, 32, 58, 65, 75, 78, 86, 104, 110, 130], "under": [4, 7, 24, 34, 36, 40, 55, 56, 58, 61, 65, 67, 81, 86, 94, 96, 116, 125, 127, 138], "term": [4, 18, 19, 27, 48, 49, 52, 65, 75, 89, 94, 95, 104, 115, 118, 126, 127, 136, 137, 141, 148, 150, 151, 152, 156, 157], "berkelei": [4, 65, 86], "bsd": [4, 65, 86, 127], "contribut": [4, 26, 27, 61, 86, 89, 96, 101, 104, 113, 116], "its": [4, 6, 13, 18, 19, 24, 31, 34, 42, 52, 55, 65, 67, 70, 75, 77, 86, 91, 92, 93, 94, 96, 101, 103, 104, 106, 109, 115, 150, 164, 170], "incept": 4, "1994": [4, 65], "major": [4, 24, 59, 86, 89, 117, 119, 120, 121, 126, 128, 133, 136, 137], "design": [4, 29, 30, 55, 86, 88, 108, 142, 166], "made": [4, 19, 20, 24, 30, 32, 37, 62, 103, 106, 118, 119, 120, 125, 127, 130, 132, 135, 136, 137, 142, 144, 151, 159, 162, 164, 167], "individu": [4, 24, 25, 55, 63, 66, 67, 71, 94, 115, 116, 158], "randal": [4, 17, 96], "univers": [4, 17, 26, 58, 65, 86, 103], "washington": [4, 17, 26, 58, 65, 129, 142, 164], "rjlevequ": [4, 19, 30, 31], "marsha": [4, 6, 17], "berger": [4, 6, 17], "courant": [4, 6, 49, 115, 126, 148, 149, 150, 152], "institut": 4, "nyu": 4, "mjberger": 4, "jan": [4, 59], "olav": 4, "langseth": [4, 17], "norwegian": 4, "defenc": 4, "research": [4, 17, 48, 52, 86, 104, 114], "establish": 4, "david": [4, 17, 86, 96, 104], "georg": [4, 17, 32], "usg": [4, 32, 166], "cascad": 4, "volcano": 4, "observatori": 4, "dlgeorg": 4, "ketcheson": [4, 17, 79, 86, 96, 104], "kaust": [4, 26], "ketch": 4, "kyle": [4, 17, 86, 92, 96, 97, 102], "mandli": [4, 17, 86, 92, 96, 97, 102], "ut": 4, "austin": 4, "contributor": [4, 26, 65, 96], "aron": [4, 17, 86, 96], "ahmadia": [4, 17, 86, 96], "amal": [4, 17, 86, 96], "alghamdi": [4, 17, 86, 96], "ghamdi": 4, "ian": 4, "bollig": 4, "bolliger32": 4, "peter": 4, "blossei": 4, "donna": [4, 17], "calhoun": [4, 17, 55], "donnabois": 4, "ond\u0159ej": 4, 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152], "adjointdata": [5, 128, 129], "ia": 5, "attribur": 5, "toler": [5, 34, 102, 109, 115, 116, 125, 149, 150, 151], "rundata": [5, 18, 19, 24, 34, 36, 41, 42, 47, 49, 63, 64, 115, 119, 130, 137, 139, 144, 148, 149, 150, 151, 152, 154], "use_adjoint": 5, "adjoint_outdir": 5, "abspath": [5, 41], "_output": [5, 13, 14, 34, 36, 38, 39, 47, 54, 64, 71, 82, 84, 93, 98, 100, 103, 124, 131, 165], "period": [5, 6, 16, 34, 66, 88, 101, 115, 118, 148, 150, 152], "t1": [5, 41, 47, 63, 64, 115, 132, 149, 150, 151], "t0": [5, 18, 19, 77, 139, 148, 150, 151, 152, 162], "t2": [5, 41, 47, 63, 64, 115, 132, 149, 150, 151], "addit": [5, 7, 13, 16, 17, 19, 25, 26, 30, 31, 34, 36, 39, 40, 41, 48, 49, 50, 63, 70, 75, 77, 78, 82, 83, 89, 92, 94, 96, 98, 104, 105, 106, 113, 115, 118, 123, 125, 126, 127, 128, 131, 132, 134, 135, 136, 140, 142, 148, 152, 158, 161, 162, 167, 168], "aux": [5, 6, 15, 22, 24, 29, 47, 57, 89, 96, 97, 98, 101, 103, 104, 106, 107, 119, 120, 125, 127, 140, 141, 145, 148, 149, 150, 151, 152, 167], "inner": [5, 115, 128], "product": [5, 32, 65, 86, 109, 115, 128], "amrdata": [5, 24, 34, 115, 130, 132, 149, 150, 151], "aux_typ": [5, 149, 150], "append": [5, 22, 34, 36, 41, 42, 47, 55, 64, 82, 91, 103, 115, 124, 125, 137, 139, 140, 150, 151], "num_aux": [5, 89, 97, 99, 101, 102, 106, 140, 148, 149, 150, 152, 167], "len": [5, 32, 37, 94, 150, 152, 164], "innerprod_index": 5, "base": [5, 6, 13, 19, 22, 23, 24, 30, 31, 32, 34, 35, 36, 48, 49, 51, 55, 56, 57, 58, 63, 64, 67, 68, 70, 71, 75, 78, 89, 91, 92, 94, 96, 97, 102, 103, 104, 106, 108, 109, 115, 117, 123, 126, 128, 132, 135, 136, 143, 148, 149, 150, 151, 152, 158, 164, 167, 170], "richardson": [5, 7, 24, 149, 150], "error": [5, 16, 22, 38, 39, 43, 55, 62, 71, 76, 82, 91, 96, 97, 98, 109, 115, 116, 128, 132, 137, 149, 150, 158, 165], "estimat": [5, 150], "flag_richardson": [5, 115, 124, 149, 150], "flag_richardson_tol": [5, 115, 149, 150], "1e": [5, 70, 152], "flag2refin": [5, 7, 24, 149, 150], "flag2refine_tol": [5, 115, 149, 150], "01": [5, 17, 42, 77, 94, 164], "we": [5, 6, 18, 19, 24, 26, 28, 34, 38, 39, 41, 42, 47, 52, 55, 57, 58, 59, 60, 62, 67, 70, 72, 75, 81, 84, 88, 89, 90, 91, 93, 94, 97, 98, 99, 100, 101, 104, 105, 106, 107, 108, 109, 110, 113, 116, 127, 130, 135, 137, 140, 141, 142, 164], "attempt": [5, 8, 11, 22, 35, 38, 39, 66, 97, 103, 109, 116, 119, 133, 158, 164, 165], "estim": [5, 68, 115, 149, 151], "step": [5, 6, 10, 16, 18, 19, 21, 30, 34, 36, 38, 39, 40, 47, 55, 58, 59, 64, 71, 77, 78, 81, 84, 86, 87, 88, 89, 91, 98, 101, 104, 106, 108, 113, 115, 118, 119, 124, 125, 135, 139, 140, 146, 148, 149, 150, 151, 152, 162, 170], "extrapol": [5, 7, 16, 24, 72, 101, 108, 127, 148, 149, 150, 152], "togeth": [5, 16, 30, 31, 32, 58, 60, 75, 115, 135], "experiment": [5, 86], "simpli": [5, 13, 19, 36, 38, 39, 40, 42, 47, 49, 55, 57, 66, 67, 70, 72, 88, 90, 91, 93, 98, 99, 105, 116, 118, 140, 142, 153, 158, 164, 167, 168], "magnitud": [5, 32, 115, 127, 151], "greater": [5, 34, 63, 68, 70, 105, 115, 139, 148, 149, 151], "model": [5, 12, 16, 17, 18, 19, 26, 27, 32, 34, 44, 48, 49, 50, 56, 57, 68, 98, 115, 124, 129, 130, 131, 142, 143, 144, 151, 154, 158, 159, 162], "davisleveque2016": [5, 17], "chile2010_adjoint": 5, "shallow": [5, 15, 16, 17, 18, 19, 27, 34, 36, 42, 48, 49, 52, 56, 70, 78, 89, 96, 112, 118, 120, 121, 123, 125, 127, 128, 136, 137, 140, 144, 145, 151, 156, 157, 162, 167], "water": [5, 16, 17, 18, 19, 27, 36, 42, 47, 48, 49, 50, 51, 52, 63, 70, 78, 81, 89, 96, 118, 120, 121, 125, 127, 128, 137, 140, 142, 143, 144, 151, 162, 164, 166, 167], "while": [5, 13, 16, 19, 32, 42, 55, 71, 75, 82, 84, 89, 94, 98, 99, 104, 109, 127, 140, 144, 151, 166], "suitabl": [5, 8, 16, 18, 19, 22, 48, 52, 55, 73, 77, 103, 114, 140, 143, 158, 164], "To": [5, 6, 13, 14, 18, 19, 20, 24, 27, 30, 31, 38, 39, 40, 41, 42, 43, 47, 50, 53, 55, 56, 59, 66, 69, 70, 71, 75, 76, 77, 82, 84, 85, 88, 90, 92, 93, 96, 97, 98, 99, 100, 101, 104, 105, 108, 111, 113, 114, 115, 116, 118, 123, 125, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 139, 143, 146, 148, 149, 153, 162, 168], "date": [5, 17, 30, 43, 51, 55, 58, 59, 66, 82, 158, 165], "across": [5, 115, 125, 162, 164], "ocean": [5, 16, 17, 19, 34, 49, 52, 55, 113, 115, 142, 151, 156, 157, 162], "wai": [5, 6, 13, 16, 19, 28, 30, 36, 38, 39, 41, 42, 47, 49, 55, 57, 58, 61, 62, 63, 65, 66, 82, 84, 85, 86, 88, 91, 93, 94, 99, 101, 103, 105, 108, 110, 111, 113, 114, 119, 125, 126, 127, 130, 137, 138, 140, 142, 147, 148, 155, 159, 162, 167, 169, 170], "target": [5, 62, 82, 89, 101, 130], "possibli": [5, 32, 36, 70, 88, 94, 111, 118, 124, 144], "deep": [5, 49, 70], "amplitud": [5, 125], "compar": [5, 18, 19, 24, 39, 47, 49, 52, 55, 59, 82, 98, 115, 116, 143, 149, 160, 166, 170], "essenti": [5, 57, 71, 104, 151, 162], "rest": [5, 24, 84, 113, 127, 143, 156, 157, 162, 164], "henc": [5, 36, 57, 58, 67, 72, 104, 110, 111, 115, 144], "take": [5, 6, 24, 29, 30, 32, 34, 37, 51, 58, 68, 70, 71, 75, 82, 88, 94, 101, 104, 108, 109, 110, 115, 116, 118, 122, 128, 136, 144, 148, 149, 150, 151, 164, 167, 170], "rpn2_geoclaw_adjoint_qwav": 5, "rpt2_geoclaw_adjoint_qwav": 5, "non": [5, 16, 59, 70, 78, 89, 101, 108, 128, 130, 148, 150, 152, 158, 170], "vector": [5, 24, 88, 92, 98, 106, 127, 135, 140, 141], "split": [5, 6, 76, 94, 97, 104, 123, 124, 132, 148, 149, 150, 152, 161, 167, 170], "flux": [5, 17, 34, 36, 37, 94, 102, 104, 140, 148, 170], "comment": [5, 11, 19, 26, 53, 59, 126, 135, 139], "rpn2": [5, 140], "basic": [6, 10, 12, 27, 32, 38, 40, 48, 61, 70, 71, 88, 94, 96, 97, 98, 102, 104, 116, 140, 141, 158, 170], "strategi": 6, "logic": [6, 16, 17, 34, 132, 151], "rectangular": [6, 7, 16, 17, 32, 34, 37, 41, 42, 48, 50, 63, 70, 94, 115, 127, 130, 135, 149, 151, 162], "too": [6, 19, 51, 55, 58, 59, 118, 124, 142, 150, 152, 154], "portion": [6, 36, 42, 55, 70, 89, 135, 161], "factor": [6, 55, 149, 151, 161, 164], "direct": [6, 8, 16, 24, 32, 34, 36, 38, 39, 47, 49, 51, 55, 59, 63, 65, 66, 71, 75, 76, 82, 86, 91, 101, 108, 115, 126, 140, 148, 149, 151, 164], "anisotrop": [6, 24], "perhap": [6, 12, 19, 34, 42, 47, 58, 82, 106, 109, 115, 142], "section": [6, 13, 16, 36, 38, 39, 42, 44, 49, 50, 52, 58, 59, 67, 71, 81, 84, 96, 116, 132, 139, 148, 151, 164], "cfl": [6, 49, 94, 98, 104, 108, 118, 119, 124, 148, 150, 151, 152], "spatial": [6, 17, 27, 32, 36, 37, 41, 42, 47, 48, 49, 64, 68, 72, 101, 115, 119, 123, 130, 132, 140, 143, 149, 150, 151, 152, 170], "reduc": [6, 16, 36, 42, 49, 55, 118, 124, 126, 135, 170], "thu": [6, 51, 98, 101, 127, 158], "proce": [6, 18, 19, 30, 151], "advanc": [6, 17, 36, 56, 70, 76, 108, 124, 136, 148, 149, 167], "taken": [6, 34, 70, 75, 98, 104, 115, 148, 167], "around": [6, 32, 34, 42, 63, 97, 113, 116, 130, 149, 150, 158, 164, 167], "librari": [6, 13, 15, 16, 18, 19, 22, 24, 27, 29, 30, 34, 36, 38, 39, 44, 47, 49, 56, 63, 66, 76, 77, 78, 86, 92, 97, 99, 104, 109, 111, 112, 115, 125, 130, 144, 145, 149, 156, 157, 165, 167], "bcnamr": [6, 16, 127, 148, 150, 167], "check": [6, 14, 15, 16, 22, 34, 38, 39, 43, 44, 54, 55, 56, 58, 59, 60, 62, 66, 71, 82, 85, 88, 89, 91, 96, 99, 103, 104, 106, 108, 109, 111, 112, 115, 120, 129, 142, 144, 145, 149, 150, 156, 157, 158, 164, 165, 166, 167], "denot": [6, 19, 24, 37, 47, 57, 140, 164], "procedur": [6, 16, 42, 48, 49, 59, 167], "updat": [6, 12, 13, 24, 25, 27, 34, 53, 56, 61, 62, 64, 84, 96, 104, 106, 107, 110, 113, 118, 119, 123, 125, 126, 127, 128, 129, 130, 140, 149, 150, 152, 155, 158, 161, 167], "consist": [6, 27, 34, 36, 51, 55, 59, 63, 99, 110, 125, 135, 136, 140, 142, 151, 162, 167], "replac": [6, 13, 31, 36, 41, 47, 52, 56, 58, 59, 61, 64, 66, 81, 89, 93, 97, 99, 100, 101, 102, 106, 109, 116, 118, 119, 125, 127, 129, 130, 135, 139, 140, 144, 164, 165], "ly": [6, 70], "within": [6, 16, 30, 36, 37, 58, 62, 70, 72, 78, 82, 100, 109, 111, 115, 140, 142, 147, 153, 164], "approxim": [6, 16, 18, 19, 27, 35, 52, 55, 72, 75, 140], "lead": [6, 13, 24, 34, 36, 52, 55, 68, 71, 75, 111, 114, 132, 144, 149], "total": [6, 32, 36, 55, 75, 77, 98, 104, 148, 149, 150, 152, 161], "mass": [6, 98, 118, 154], "restor": 6, "global": [6, 14, 94, 106, 109, 118, 143, 162, 166, 167], "fix": [6, 21, 22, 24, 27, 35, 37, 41, 47, 48, 49, 58, 59, 63, 64, 66, 70, 72, 86, 97, 102, 118, 119, 120, 121, 122, 123, 124, 125, 126, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 141, 148, 150, 152, 164], "up": [6, 13, 19, 24, 30, 31, 32, 34, 36, 38, 39, 42, 43, 47, 48, 55, 58, 59, 63, 66, 70, 71, 75, 77, 82, 88, 89, 91, 93, 95, 96, 97, 99, 104, 105, 108, 111, 113, 115, 116, 118, 123, 124, 127, 130, 132, 137, 142, 144, 147, 150, 152, 161, 162, 165, 166], "style": [6, 24, 30, 32, 36, 41, 53, 55, 70, 73, 82, 86, 91, 127, 151], "olig": [6, 17], "colella": [6, 17], "bergeroliger84": [6, 17], "bergercolella89": [6, 17], "fortran": [6, 9, 11, 13, 14, 19, 22, 25, 29, 30, 32, 34, 35, 36, 37, 38, 47, 48, 50, 57, 60, 62, 66, 67, 68, 72, 76, 77, 78, 81, 84, 86, 88, 89, 91, 94, 96, 97, 99, 101, 102, 104, 105, 106, 109, 111, 118, 123, 124, 125, 127, 128, 129, 135, 136, 140, 141, 146, 149, 150, 151, 152, 158, 160, 161, 162], "written": [6, 11, 27, 32, 34, 36, 37, 43, 47, 62, 63, 64, 65, 75, 77, 78, 82, 86, 95, 96, 97, 101, 125, 140, 148, 149, 150, 151, 152, 158, 164, 167], "ga": [6, 102], "dynam": [6, 22, 32, 36, 52, 75, 78, 149], "merg": [6, 13, 27, 30, 56, 58, 59, 62, 123], "earli": [6, 22, 144], "mjb": [6, 17], "rjl": [6, 17, 111, 129], "fulli": [6, 52, 55, 56, 126, 130, 140, 151, 158, 159], "consid": [6, 42, 52, 62, 70, 89, 111, 146, 153, 164], "adjac": [6, 16, 34, 48, 115, 144, 148], "equival": [6, 47, 56, 57, 63, 64, 77, 129, 135, 162], "copi": [6, 14, 15, 16, 19, 38, 39, 47, 55, 58, 59, 62, 71, 88, 91, 101, 106, 112, 113, 114, 115, 120, 124, 127, 131, 144, 145, 149, 153, 156, 157, 162, 167], "interior": [6, 16, 42, 77, 106], "howev": [6, 13, 16, 18, 19, 24, 34, 38, 39, 42, 44, 49, 50, 52, 55, 62, 65, 67, 70, 72, 75, 76, 77, 86, 89, 96, 115, 116, 125, 127, 129, 143, 144, 147, 151, 161], "lie": [6, 34, 35, 37, 70, 72, 115, 130, 142], "outsid": [6, 16, 41, 63, 70, 130, 142, 144, 162, 164], "li": [6, 16, 34, 37, 72, 115, 142], "along": [6, 14, 16, 19, 26, 29, 32, 34, 42, 47, 55, 58, 61, 75, 77, 111, 115, 118, 123, 138, 139, 142, 144, 151, 166], "unless": [6, 34, 43, 44, 63, 102, 110, 143, 148, 149, 164], "standard": [6, 16, 19, 32, 34, 36, 49, 55, 57, 71, 77, 89, 92, 104, 111, 115, 116, 150, 151, 152, 153, 162, 167, 170], "beyond": [6, 32, 110, 127], "modifi": [6, 9, 14, 15, 16, 18, 19, 22, 24, 29, 34, 38, 39, 42, 47, 48, 58, 59, 62, 64, 66, 71, 74, 82, 89, 92, 94, 96, 101, 111, 112, 113, 114, 115, 122, 124, 125, 126, 127, 132, 142, 144, 145, 148, 150, 151, 152, 156, 157, 162, 164, 167], "damag": [6, 65, 86], "bcn": [6, 16, 152, 167], "nd": [6, 16, 115, 127, 130, 167], "actual": [6, 29, 32, 36, 57, 62, 63, 71, 75, 82, 92, 97, 109, 113, 143, 151], "softwar": [6, 13, 26, 27, 31, 48, 52, 65, 86, 96, 97, 98, 153, 162], "With": [6, 24, 30, 47, 51, 53, 55, 62, 70, 78, 115, 124, 140, 142, 148], "opposit": [6, 16, 97], "side": [6, 16, 19, 20, 34, 55, 58, 68, 75, 97, 116, 118, 135, 136, 137, 140, 170], "everi": [6, 12, 30, 34, 36, 47, 64, 66, 67, 77, 88, 91, 93, 97, 98, 106, 115, 116, 118, 125, 126, 140, 144, 146, 148, 150, 152, 158, 162, 164, 167], "few": [6, 12, 13, 19, 24, 28, 30, 31, 39, 49, 52, 58, 70, 71, 89, 104, 108, 110, 115, 116, 130, 143, 160, 162, 167], "coarsest": [6, 19, 36, 55, 77, 119, 139, 148], "revis": [6, 125], "shock": [6, 17, 52, 104, 115], "accord": [6, 57, 97], "criteria": [6, 7, 24, 27, 34, 70, 106], "cluster": [6, 17, 115, 149, 150], "rigoutsi": 6, "bergerrigoutsis91": [6, 17], "nonoverlap": 6, "rectangl": [6, 7, 27, 32, 36, 70, 75, 115, 130, 164], "balanc": [6, 17, 78, 126, 141, 156, 157], "conflict": [6, 30, 62, 66, 71, 107, 111], "goal": 6, "possibl": [6, 13, 24, 28, 30, 32, 34, 36, 37, 47, 49, 51, 52, 55, 64, 65, 66, 75, 82, 86, 94, 97, 99, 100, 104, 109, 111, 115, 140, 142, 143, 148, 149, 162, 166, 167], "minim": [6, 62, 70, 97, 142, 149, 164], "overhead": [6, 76, 115, 161], "cutoff": [6, 150], "control": [6, 7, 25, 27, 34, 36, 44, 47, 58, 62, 64, 71, 77, 84, 87, 92, 94, 96, 97, 98, 99, 101, 115, 125, 130, 141, 151], "fraction": [6, 13, 32, 115, 148, 167, 170], "7": [6, 14, 31, 34, 36, 41, 42, 47, 51, 58, 64, 68, 70, 77, 82, 85, 94, 105, 111, 115, 132, 138, 142, 143, 144, 149, 150], "70": [6, 36, 55], "realli": [6, 72, 116, 167], "At": [6, 13, 29, 30, 36, 38, 39, 42, 70, 99, 104, 108, 110, 115, 130, 148], "present": [6, 26, 63, 72, 94, 97, 102, 103, 104, 109, 153, 154, 167, 170], "previous": [6, 24, 34, 70, 77, 84, 118, 123, 130, 144], "bilinear": [6, 34, 42, 47, 57, 72, 119, 120, 162], "doxygen": [6, 7, 27, 126], "flowchart": [6, 7, 27], "capabl": [7, 12, 19, 24, 34, 36, 47, 52, 56, 64, 70, 78, 89, 96, 119, 124, 125, 127, 128, 129, 130, 131, 135, 136, 164, 166], "block": [7, 32, 35, 42, 63, 75, 77, 78, 88, 97, 106, 109, 116, 167], "structur": [7, 10, 24, 34, 36, 37, 41, 59, 62, 66, 78, 103, 104, 125, 142, 147, 164], "input": [7, 14, 16, 22, 25, 27, 29, 32, 35, 37, 43, 48, 55, 63, 67, 70, 71, 77, 88, 91, 92, 94, 96, 102, 103, 104, 109, 113, 124, 127, 128, 129, 140, 150, 151, 152, 158, 159, 162, 164, 167], "indic": [7, 16, 19, 22, 24, 27, 31, 32, 34, 36, 41, 42, 44, 47, 48, 55, 57, 59, 62, 67, 71, 72, 80, 84, 94, 98, 99, 102, 104, 108, 111, 115, 116, 125, 130, 132, 140, 141, 148, 149, 150, 151, 152, 154, 162, 164, 167], "tool": [7, 8, 17, 24, 25, 30, 32, 34, 35, 36, 37, 38, 39, 42, 48, 49, 50, 51, 52, 55, 57, 60, 61, 62, 63, 71, 75, 80, 81, 82, 83, 85, 96, 111, 114, 120, 121, 125, 126, 130, 131, 151, 153, 162, 164, 166, 168], "matlab": [7, 24, 27, 38, 39, 80, 81, 82, 100, 110, 118, 127, 130, 131], "deprec": [7, 32, 48, 58, 62, 118, 123, 127, 135, 137, 162, 164], "debug": [7, 18, 44, 66, 77, 81, 98, 106, 111, 116, 135, 148, 150], "flag": [7, 12, 13, 18, 24, 27, 30, 31, 41, 43, 44, 48, 56, 62, 76, 89, 107, 109, 111, 118, 123, 128, 132, 150, 151], "sampl": [7, 8, 14, 17, 18, 27, 31, 36, 44, 47, 48, 51, 55, 64, 75, 111, 116, 135, 139, 142, 148, 149, 162, 164, 167], "ghost": [7, 16, 19, 76, 77, 94, 97, 104, 106, 125, 132, 136, 148, 150, 152, 161, 167, 170], "flagregion": [7, 27, 70, 115, 130, 132, 142, 149, 151], "rule": [7, 13, 27, 63, 70, 89], "convex": [7, 34], "slu": 7, "bounding_box": [7, 35], "mask_outsid": [7, 70], "write": [7, 30, 32, 35, 36, 37, 41, 42, 47, 48, 54, 57, 58, 68, 75, 77, 78, 81, 88, 91, 94, 95, 97, 98, 99, 103, 118, 125, 127, 150, 152, 158, 162, 164], "instanti": [7, 91, 99, 101, 104, 106, 136, 150, 152], "make_kml": 7, "simpl": [7, 31, 38, 39, 41, 48, 59, 72, 75, 89, 96, 101, 102, 104, 109, 114, 116, 164], "select": [7, 12, 13, 15, 16, 30, 34, 42, 70, 97, 98, 104, 112, 115, 119, 126, 130, 138, 145, 148, 151, 156, 157, 166], "continent": [7, 70], "shelf": [7, 70], "guid": [7, 13, 17, 20, 25, 26, 27, 48, 50, 56, 61, 96, 110, 115, 118, 126, 130, 135, 136, 137, 155], "adjoint": [7, 17, 27, 56, 115, 127, 128], "gaug": [7, 27, 34, 36, 48, 49, 63, 72, 94, 95, 106, 113, 119, 123, 124, 125, 126, 127, 130, 135, 139, 143, 147, 150], "extend": [8, 16, 24, 42, 63, 70, 71, 94, 127, 142, 144, 151, 162, 164, 170], "directli": [8, 18, 19, 21, 25, 34, 48, 52, 61, 71, 75, 82, 84, 88, 89, 92, 96, 106, 109, 111, 127, 135, 164, 168], "obviou": [8, 55], "elimin": [8, 24, 70, 89, 111, 127, 151], "gallery_classic_amrclaw": 8, "num_cel": [8, 24, 49, 94, 140, 148, 149, 150, 152], "refinement_ratios_i": [8, 149, 150], "sweep": [8, 140], "transvers": [8, 94, 125, 132, 140, 141, 148, 167, 170], "graph": 9, "understand": [9, 27, 38, 39, 52, 81, 96, 108, 115, 140], "filpatch": [9, 42, 125, 129, 132], "idea": [10, 26, 32, 70, 71, 78, 88, 108, 120, 164, 170], "overal": [10, 88], "who": [10, 12, 21, 24, 26, 34, 44, 52, 60, 118], "gori": 10, "monster": 10, "column": [10, 32, 34, 47, 49, 52, 64, 98, 102, 123, 142, 164], "markup": 11, "languag": [11, 81, 109], "restructur": [11, 58], "text": [11, 58, 59, 63, 77, 91, 97, 104, 123], "sphinx": [11, 25, 27, 59, 126], "covert": 11, "convert_readm": 11, "brows": [11, 26, 45, 55, 71, 153, 167], "insert": [11, 16, 75, 97, 118, 146], "script": [11, 21, 22, 30, 32, 34, 36, 43, 47, 55, 58, 66, 71, 78, 81, 86, 89, 93, 95, 96, 98, 99, 104, 109, 111, 116, 127, 131, 140, 147, 151, 152, 164], "invok": [11, 14, 19, 76, 144, 165], "minor": [11, 19, 55, 58, 98, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 130, 132, 134, 136, 137], "syntax": [11, 61, 146], "highlight": [11, 13], "header": [11, 32, 34, 36, 42, 47, 57, 70, 75, 77, 97, 103, 123, 125, 127, 158, 162, 164], "complex": [12, 19, 36, 41, 94], "archiv": [12, 23, 39, 55, 59, 116, 153, 160, 164, 166], "github": [12, 15, 19, 24, 25, 26, 27, 28, 31, 56, 58, 61, 62, 93, 101, 105, 112, 116, 118, 122, 124, 125, 126, 135, 138, 140, 141, 145, 156, 157, 165], "app": [12, 13, 20, 25, 28, 30, 31, 40, 45, 46, 75, 113, 114, 118, 122, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 141], "com": [12, 13, 19, 25, 26, 28, 30, 31, 51, 56, 58, 59, 61, 62, 97, 99, 101, 105, 122, 124, 125, 126, 135, 138, 141], "fvmbook": [12, 17, 45, 46], "galleri": [12, 17, 27, 34, 36, 38, 39, 40, 45, 48, 49, 59, 80, 81, 93, 96, 110, 116, 122, 126, 153, 160, 167], "anim": [12, 16, 36, 45, 49, 55, 123, 130, 131, 135, 153], "instal": [12, 13, 19, 20, 25, 27, 31, 38, 46, 55, 58, 59, 84, 86, 87, 90, 95, 97, 108, 110, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 146, 169], "collect": [12, 27, 28, 30, 32, 34, 75, 81, 88, 104, 153], "either": [12, 16, 19, 22, 32, 34, 36, 42, 48, 50, 55, 64, 66, 70, 71, 75, 77, 82, 84, 88, 94, 96, 97, 98, 104, 109, 111, 115, 116, 123, 124, 125, 127, 135, 140, 142, 144, 149, 151, 158, 162, 164, 167, 170], "clone": [12, 20, 25, 26, 45, 56, 58, 59, 62, 85, 99, 105, 114, 118, 135, 136, 137, 165], "git": [12, 13, 25, 26, 27, 28, 56, 59, 62, 96, 105, 116, 129], "navig": [12, 31, 58, 153], "green": [12, 18, 19, 63, 70, 75, 82, 116, 164], "button": [12, 13, 30, 55, 63, 126], "download": [12, 13, 30, 31, 32, 39, 40, 42, 48, 55, 59, 61, 62, 93, 99, 105, 127, 128, 138, 160, 164, 165, 166], "zip": [12, 55, 59], "illustr": [12, 27, 32, 34, 38, 46, 48, 49, 55, 70, 71, 75, 77, 114, 122, 123, 127, 129, 140, 142, 153, 154, 164], "variou": [12, 19, 22, 24, 32, 36, 41, 46, 52, 58, 71, 72, 75, 82, 84, 94, 108, 110, 111, 115, 125, 140, 147, 151, 154, 158], "visibl": [12, 13, 46, 55, 114, 153], "render": [12, 24, 34, 46, 55, 63, 168], "advantag": [12, 19, 36, 47, 64, 81, 97, 110, 116, 142], "independ": [12, 25, 32, 36, 37], "contact": [12, 93, 96, 105], "u": [12, 13, 16, 26, 31, 34, 36, 37, 51, 52, 59, 60, 62, 64, 86, 93, 96, 102, 105, 106, 107, 108, 113, 126, 140, 149, 152, 158, 166], "storm": [12, 17, 26, 27, 48, 123, 126, 127, 128, 129, 131, 132, 133], "surg": [12, 17, 26, 27, 48, 123, 126, 127, 128, 129, 132, 158], "empti": [12, 36, 47, 103, 106, 109, 111, 118, 148, 151, 158, 164], "gitmodul": 12, "pull": [12, 26, 28, 31, 58, 59, 61, 93, 101, 116, 122, 125, 126, 132, 135, 140], "request": [12, 26, 28, 32, 36, 37, 47, 58, 61, 77, 88, 93, 94, 98, 101, 103, 116, 118, 125, 127, 132, 140, 151, 158, 164], "init": [12, 27, 30, 42, 48, 56, 59, 61, 143, 151], "leav": [12, 13, 16, 47, 62, 149, 164], "off": [12, 13, 47, 52, 55, 63, 71, 84, 91, 98, 115, 135, 149, 164], "won": [12, 13, 70, 89, 164], "hurt": [12, 67], "maintain": [12, 30, 110, 127, 149, 162, 167], "flavor": [12, 23, 97], "demonstr": [12, 27, 93, 99], "agre": [12, 30, 42, 57, 140, 161, 164, 167], "seen": [12, 24, 34, 38, 39, 40, 52, 76, 101, 148, 153], "cloud": 13, "elast": [13, 75], "sign": [13, 26, 82, 132, 158], "account": [13, 26, 30, 59, 90, 99, 139], "750": 13, "free": [13, 55, 66, 75, 86, 90, 101, 105, 107], "micro": 13, "suffici": [13, 16, 18, 19, 22, 36, 47, 75, 76, 77, 113, 119, 135, 148, 151], "tier": 13, "inform": [13, 14, 24, 27, 34, 35, 37, 38, 39, 49, 50, 51, 52, 53, 54, 62, 67, 77, 82, 83, 84, 88, 89, 94, 96, 98, 99, 100, 102, 103, 109, 111, 124, 127, 128, 130, 136, 138, 139, 140, 143, 146, 148, 149, 151, 158, 161, 162, 165, 166, 167, 168], "uw": [13, 26], "escienc": 13, "aw": 13, "tutori": [13, 31, 59, 84, 87, 91, 96, 105, 111, 114], "gear": 13, "faq": [13, 27, 81], "price": 13, "charg": 13, "per": [13, 32, 37, 47, 49, 55, 63, 71, 76, 97, 149], "thereof": 13, "regardless": [13, 37, 42, 70, 115, 148], "cpu": [13, 56, 124, 127, 129, 161], "consol": [13, 98, 151], "tab": [13, 58, 138], "east": [13, 162], "cheaper": 13, "rate": 13, "menu": [13, 20, 27, 58, 63, 118, 126, 135, 136, 137, 138, 143, 166], "imag": [13, 38, 39, 42, 59, 63, 70, 116, 127, 142], "platform": [13, 55, 91, 99, 110, 116], "finish": [13, 82, 88], "load": [13, 63, 98, 100, 103, 109, 116, 164, 168], "databas": [13, 32, 75, 109, 113, 127, 162], "uwamath": 13, "bar": [13, 58, 158], "screen": [13, 30, 55, 63, 91, 98, 99, 124, 150, 152], "shapshot": 13, "machin": [13, 27, 76, 78, 116, 125, 146], "disk": [13, 47, 88, 97, 98, 116, 125], "ubuntu": 13, "linux": [13, 74, 85, 107, 116, 146], "popup": 13, "look": [13, 14, 24, 27, 30, 32, 42, 55, 58, 59, 63, 71, 82, 84, 89, 94, 99, 103, 104, 108, 109, 111, 116, 120, 127, 136, 142, 148, 149, 151, 161, 164, 165], "sort": [13, 42, 127, 147, 165], "larger": [13, 22, 34, 49, 55, 63, 75, 76, 77, 82, 94, 119, 125, 132, 149, 151, 162], "cost": [13, 104], "continu": [13, 24, 30, 32, 51, 53, 58, 86, 110, 118, 140, 148, 170], "eventu": [13, 48, 130], "don": [13, 29, 30, 58, 59, 82, 97, 98, 99, 105, 116, 150, 165], "pair": [13, 51, 97, 116, 164], "secur": 13, "quick": [13, 27, 39, 48, 50, 60, 85, 116, 160], "close": [13, 42, 55, 58, 63, 70, 71, 97, 115, 118, 130, 149, 158], "back": [13, 29, 31, 58, 59, 126], "statu": [13, 30, 54, 91, 108], "wait": 13, "until": [13, 34, 64, 70, 137, 144], "refresh": [13, 47], "bottom": [13, 15, 19, 32, 38, 39, 48, 52, 68, 70, 75, 88, 101, 102, 125, 126, 145, 156, 157], "scroll": 13, "down": [13, 32, 98, 124, 158, 162, 164], "dn": 13, "screenshot": [13, 55], "rjlkei": 13, "pem": 13, "abl": [13, 58, 111], "ssh": [13, 30], "keypair": 13, "50": [13, 17, 34, 51, 55, 72, 104, 120, 150], "19": [13, 17, 26, 133, 134, 138, 161], "75": [13, 17, 92, 108, 142], "229": 13, "amazonaw": 13, "gfortran": [13, 62, 76, 85, 87, 107, 118, 146, 165], "ipython": [13, 78, 82, 84, 89, 90, 96, 98, 105, 108, 111, 123, 124], "scipi": [13, 37, 89, 110, 137, 158, 164], "netcdf": [13, 37, 44, 48, 124, 127, 129, 131, 158, 164, 166], "apach": 13, "server": [13, 31, 42, 55, 58, 59, 70, 127, 162, 166], "apt": [13, 85], "fetch": [13, 51], "bring": [13, 55, 58, 71, 151], "master": [13, 15, 27, 31, 58, 59, 62, 101, 112, 118, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 141, 145, 156, 157], "make_lib": 13, "compil": [13, 18, 19, 27, 38, 39, 43, 50, 62, 67, 76, 78, 84, 85, 89, 96, 97, 101, 105, 109, 118, 119, 140, 141, 146], "bashrc": [13, 44, 107, 146], "Of": [13, 28, 75, 108, 113, 162], "cours": [13, 28, 34, 47, 50, 64, 75, 99, 100, 108, 110, 113, 151, 162], "tar": [13, 129, 138], "instruct": [13, 19, 20, 26, 27, 38, 39, 42, 55, 56, 58, 59, 88, 90, 96, 99, 105, 108, 111, 118, 126, 133, 135, 136, 137, 138, 139, 165], "window": [13, 32, 71, 84, 146], "respons": [13, 52, 88, 103], "pretti": 13, "slow": [13, 55, 98, 107], "_plot": [13, 38, 39, 47, 71, 84, 118, 147, 153], "local": [13, 17, 19, 22, 27, 30, 55, 58, 63, 66, 67, 71, 92, 94, 101, 106, 125, 127, 136, 144, 162, 164, 167], "sftp": 13, "much": [13, 19, 30, 34, 36, 44, 49, 55, 77, 78, 81, 85, 110, 115, 119, 123, 130, 135, 136, 142, 148, 151, 161, 164], "smaller": [13, 36, 55, 68, 78, 94, 98, 119, 135, 144, 148, 150, 151, 152, 164], "quicker": [13, 142], "browser": [13, 30, 31, 38, 39, 55, 58, 153], "explain": [13, 19, 34, 52, 70, 132, 148, 153], "webserv": 13, "inbound": 13, "port": [13, 31, 95, 96, 101, 149], "22": [13, 26, 149, 164], "80": [13, 17, 55, 99, 142], "drop": [13, 18, 19, 58, 85, 130, 132, 144, 148], "tcp": 13, "Then": [13, 16, 30, 31, 32, 36, 47, 58, 59, 60, 67, 70, 75, 76, 84, 88, 91, 99, 105, 106, 107, 111, 118, 140, 142, 164, 165], "someth": [13, 29, 30, 58, 66, 74, 81, 98, 103, 104, 111, 118, 162, 165, 167], "shot": 13, "ln": 13, "expos": [13, 78], "home": [13, 31, 32, 62, 146], "scp": 13, "TO": [13, 65, 86], "send": [13, 26, 101, 140], "remot": [13, 55, 59, 127, 164, 166], "rel": [13, 18, 19, 22, 32, 43, 50, 52, 55, 75, 76, 82, 96, 109, 111, 116, 118, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 143, 149, 151, 153, 162, 166], "end": [13, 31, 32, 34, 35, 36, 47, 51, 55, 59, 63, 91, 98, 102, 108, 110, 113, 115, 118, 124, 125, 127, 139, 141, 142, 150, 152, 158, 161], "retriev": [13, 37, 51, 84, 89, 104, 164, 166], "sit": 13, "idl": 13, "action": [13, 14, 89], "restart": [13, 27, 47, 77, 84, 96, 118, 124, 125, 126, 127, 129, 132, 136, 148, 150, 152], "later": [13, 36, 37, 42, 54, 55, 62, 84, 104, 139], "But": [13, 19, 34, 42, 55, 72, 82, 107, 120, 127, 144, 146], "futur": [13, 24, 27, 28, 38, 39, 42, 49, 52, 57, 63, 68, 88, 104, 110, 124, 125, 127, 130, 136, 149, 158, 162], "job": [13, 134], "eb": 13, "runclaw": [14, 54, 118, 120, 129, 131, 137, 140], "autom": [14, 58, 89, 116], "certain": [14, 34, 48, 61, 70, 98, 115, 124, 142, 148], "keep": [14, 27, 30, 34, 35, 37, 38, 39, 76, 88, 91, 96, 106, 109, 116, 120], "log": [14, 27, 30, 31, 94, 95, 96, 103, 104], "came": 14, "rundir": [14, 91], "environ": [14, 18, 19, 27, 30, 38, 39, 40, 43, 54, 55, 58, 61, 62, 71, 74, 76, 78, 100, 107, 109, 111, 125, 164, 165], "noth": [15, 64, 106, 128, 145, 156, 157, 164, 167], "rememb": [15, 29, 76, 82, 99, 145, 156, 157], "b4step1": [15, 67, 167], "b4step2": [15, 145, 167], "b4step3": 15, "branch": [15, 20, 27, 31, 44, 54, 56, 59, 61, 62, 112, 116, 118, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 145, 156, 157], "tag": [15, 55, 59, 61, 112, 145, 149, 150, 156, 157], "bathymetri": [15, 48, 52, 55, 63, 102, 113, 125, 127, 141, 143, 145, 151, 162, 164], "area": [15, 24, 48, 104, 113, 125, 144, 145], "dy": [15, 51, 57, 63, 64, 77, 89, 94, 98, 123, 127, 145, 162, 164], "capac": [15, 102, 145, 148, 149, 150, 152], "length": [15, 32, 37, 49, 52, 63, 75, 101, 106, 125, 132, 145, 148, 149, 150, 151, 167], "latter": [15, 18, 47, 70, 72, 101, 130, 142, 145, 148, 158, 167], "quantiti": [15, 18, 19, 34, 37, 63, 71, 72, 91, 95, 96, 102, 106, 141, 145, 151], "coordinate_system": [15, 18, 49, 64, 145, 151], "impos": [16, 89, 115, 156, 157, 170], "chapter": [16, 140, 148, 167], "choic": [16, 48, 81, 104, 148, 150, 151, 152, 167], "bc_lower": [16, 88, 101, 108, 148, 150, 152], "bc_upper": [16, 88, 101, 108, 148, 150, 152], "extrap": [16, 101, 108, 148, 150], "outflow": [16, 148, 150, 152], "move": [16, 34, 38, 39, 48, 58, 62, 64, 75, 101, 115, 119, 121, 126, 151, 154, 162, 163], "normal": [16, 19, 35, 36, 56, 58, 64, 82, 101, 111, 140, 141, 148, 149, 150, 151, 152], "fairli": [16, 52, 125], "good": [16, 19, 30, 52, 55, 65, 76, 86, 108, 113, 116, 125, 132, 140], "outgo": 16, "let": [16, 48, 62, 86, 113, 126, 132, 140], "without": [16, 24, 35, 43, 47, 52, 63, 65, 66, 67, 70, 71, 82, 84, 86, 92, 96, 97, 98, 109, 111, 116, 136, 142, 146, 150, 152, 158, 165, 167], "particularli": [16, 19, 29, 31, 34, 36, 54, 55, 60, 61, 62, 75, 77, 111, 120, 123, 127, 132, 136, 144, 162], "perfect": 16, "hit": [16, 17, 36, 71, 77, 84, 98, 148], "obliqu": 16, "perfectli": 16, "wall": [16, 44, 101, 108, 124, 127, 129, 148, 150, 152, 161], "veloc": [16, 34, 36, 51, 64, 71, 84, 101, 102, 108, 125, 135, 143, 148, 149, 150, 151, 152, 167], "momentum": [16, 18, 34, 36, 37, 52, 64, 68, 98, 132, 141, 151, 154, 162], "third": [16, 18, 19, 34, 57, 92, 161, 164], "acoust": [16, 31, 38, 39, 52, 87, 88, 91, 93, 96, 104, 105, 123, 140, 150, 167], "p": [16, 17, 31, 84, 86, 88, 94, 97, 98, 102, 106, 118, 140, 170], "hu": [16, 18, 19, 36, 37, 64, 68, 102, 141, 151], "hv": [16, 19, 36, 37, 64, 68, 141, 151], "equal": [16, 19, 32, 34, 35, 36, 37, 49, 51, 55, 72, 75, 77, 99, 101, 115, 139, 142, 148, 150, 152, 162, 164], "far": [16, 18, 19, 41, 45, 70, 81, 128, 130, 132, 135], "symmetri": [16, 49], "physic": [16, 19, 47, 49, 55, 89, 94, 96, 108, 115, 170], "slightli": [16, 19, 42, 57, 125, 126, 132, 142], "complic": [16, 82, 89, 142, 147], "alwai": [16, 19, 24, 28, 29, 30, 34, 36, 37, 44, 57, 58, 62, 71, 88, 97, 114, 115, 119, 120, 132, 136, 144, 148, 150, 152, 162, 167], "alon": [16, 55], "topographi": [16, 17, 19, 27, 34, 35, 36, 37, 47, 48, 49, 52, 57, 63, 68, 72, 75, 83, 113, 114, 118, 119, 120, 121, 123, 124, 127, 130, 133, 136, 142, 143, 144, 156, 157, 163], "artifici": [16, 144], "ignor": [16, 49, 55, 63, 97, 123, 132, 143, 164], "incom": 16, "truncat": [16, 36, 77, 97, 148], "spuriou": [16, 34, 116], "extropl": 16, "dry": [16, 17, 27, 34, 48, 102, 130, 133, 141, 144], "land": [16, 42, 48, 50, 55, 58, 59, 63, 70, 72, 83, 130, 144, 151, 164], "tank": [16, 49, 52], "bc2amr": [16, 127], "calhounhelzellevequ": 16, "envis": 16, "fold": 16, "piec": [16, 52, 94], "glu": 16, "inflat": 16, "websit": [16, 55, 58, 97, 153, 164], "bergercalhounhelzellevequ": 16, "hint": [16, 27, 48, 81, 84, 111, 151, 165], "suppos": [16, 67, 70, 71, 82, 111, 115], "bit": [16, 24, 32, 59, 97, 99, 107, 141], "examin": [16, 38, 39, 47, 70, 111, 135], "own": [16, 22, 26, 30, 36, 62, 88, 89, 95, 96, 105, 106, 113, 115, 127, 140, 153], "todo": [16, 140, 158, 164, 170], "poster": 17, "resourc": [17, 26, 30, 50, 110], "bale": 17, "rossmanith": 17, "siam": [17, 26, 27, 96, 140], "sci": 17, "24": [17, 55, 72, 142], "2002": 17, "955": [17, 142], "978": 17, "author": [17, 27, 48, 52, 92, 96, 97, 102, 114], "1989": 17, "hydrodynam": 17, "phy": 17, "82": 17, "64": [17, 94, 97, 99, 107], "84": [17, 55], "34": [17, 55, 63, 96], "2011": [17, 26, 86], "pp": 17, "1195": 17, "1206": 17, "adv": 17, "awr11": 17, "1998": 17, "anal": 17, "35": [17, 34, 57, 75, 96], "2298": 17, "2316": 17, "bergerleveque2023": [17, 18, 19, 49], "2023": [17, 45, 118, 136, 137, 138], "implicit": [17, 19, 86, 104], "dispers": [17, 18, 48, 49, 52], "submit": 17, "1984": 17, "partial": [17, 78, 113], "differenti": [17, 32], "53": 17, "484": 17, "512": 17, "rigoutso": 17, "1991": 17, "ieee": 17, "tran": 17, "sy": [17, 42, 70, 91, 150, 152], "man": [17, 27, 48, 52, 151, 156, 157], "cyber": 17, "21": [17, 71, 92, 94, 123, 124, 138], "1278": 17, "1286": 17, "2018": [17, 26, 58, 127, 128, 138], "phd": 17, "thesi": [17, 104], "pure": [17, 56, 84, 94, 96, 97, 99, 104, 116, 141], "appl": 17, "geophi": 17, "173": 17, "4055": 17, "4074": 17, "info": [17, 31, 32, 35, 36, 37, 47, 59, 63, 71, 91, 94, 97, 98, 104, 125, 135, 149, 150, 158], "analysi": 17, "evalu": [17, 29, 32, 36, 37, 68, 72, 88, 94, 104, 164, 167], "preprint": 17, "2000": [17, 57, 162, 164], "165": [17, 161], "126": [17, 164], "166": 17, "leveque96": 17, "1996": 17, "advect": [17, 82, 96, 99, 140, 141, 152, 167], "incompress": 17, "leveque1996": 17, "33": [17, 94, 142], "627": 17, "665": 17, "1997": [17, 96], "multi": [17, 55, 88, 119, 121, 124, 127, 167], "131": [17, 96], "327": [17, 96], 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"statist": 161, "download": 162, "displac": 162, "topo": 163, "topotool": 164, "f2py": 165, "ex": 165, "bathymetri": 166, "dart": 166, "buoi": 166, "tide": 166, "done": 167, "befor": 167, "visit": 168, "virtual": 169, "propag": 170, "godunov": 170, "high": 170, "formul": 170, "capac": 170}, "envversion": {"sphinx.domains.c": 2, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 8, "sphinx.domains.index": 1, "sphinx.domains.javascript": 2, "sphinx.domains.math": 2, "sphinx.domains.python": 3, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx": 57}, "alltitles": {"ClawPlotAxes": [[0, "clawplotaxes"]], "Attributes": [[0, "attributes"], [1, "attributes"], [2, "attributes"], [3, "attributes"]], "Attributes for gauge plots": [[0, "attributes-for-gauge-plots"]], "Methods": [[0, "methods"], [1, "methods"], [2, "methods"], [3, "methods"]], "ClawPlotData": [[1, "clawplotdata"]], "ClawPlotFigure": [[2, "clawplotfigure"]], "ClawPlotItem": [[3, "clawplotitem"]], "Special attributes for all 1d plots,  plot_type = \u20181d\u2026\u2019": [[3, "special-attributes-for-all-1d-plots-plot-type-1d"]], "Special attributes for plot_type = \u20181d_plot\u2019": [[3, "special-attributes-for-plot-type-1d-plot"]], "Special attributes for plot_type = \u20181d_fill_between\u2019": [[3, "special-attributes-for-plot-type-1d-fill-between"]], "Special attributes for plot_type = \u20181d_from_2d_data\u2019": [[3, "special-attributes-for-plot-type-1d-from-2d-data"]], "Special attributes for all 2d plots,  plot_type = \u20182d\u2026\u2019": [[3, "special-attributes-for-all-2d-plots-plot-type-2d"]], "Special attributes for plot_type = \u20182d_contour\u2019": [[3, "special-attributes-for-plot-type-2d-contour"]], "Special attributes for plot_type = \u20182d_pcolor\u2019": [[3, "special-attributes-for-plot-type-2d-pcolor"]], "Special attributes for plot_type = \u20182d_imshow\u2019": [[3, "special-attributes-for-plot-type-2d-imshow"]], "Special 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"for-more-details"]], "AMRClaw Description and Detailed Contents": [[7, "amrclaw-description-and-detailed-contents"]], "AMRClaw for 1d problems": [[8, "amrclaw-for-1d-problems"]], "Old approach, deprecated:": [[8, "old-approach-deprecated"]], "Doxygen documentation of AMRClaw": [[9, "doxygen-documentation-of-amrclaw"]], "AMRClaw Flowcharts": [[10, "amrclaw-flowcharts"]], "Application documentation": [[11, "application-documentation"]], "Converting README.rst to README.html": [[11, "converting-readme-rst-to-readme-html"]], "Converting code to html with clawcode2html": [[11, "converting-code-to-html-with-clawcode2html"]], "Clawpack Applications repository": [[12, "clawpack-applications-repository"]], "Jupyter Notebooks": [[12, "jupyter-notebooks"]], "Submodules": [[12, "submodules"]], "Examples included with Clawpack": [[12, "examples-included-with-clawpack"]], "Amazon Web Services EC2 Clawpack AMI": [[13, "amazon-web-services-ec2-clawpack-ami"]], "Finding the Clawpack AMI": [[13, "finding-the-clawpack-ami"]], "Launching an instance": [[13, "launching-an-instance"]], "Logging on to your instance": [[13, "logging-on-to-your-instance"]], "Using Clawpack": [[13, "using-clawpack"]], "Viewing plots of results": [[13, "viewing-plots-of-results"]], "Viewing webpages directly from your instance": [[13, "viewing-webpages-directly-from-your-instance"]], "Transferring files to/from your instance": [[13, "transferring-files-to-from-your-instance"]], "Stopping your instance": [[13, "stopping-your-instance"]], "Creating your own AMI": [[13, "creating-your-own-ami"]], "b4run function": [[14, "b4run-function"]], "b4step default routines": [[15, "b4step-default-routines"]], "b4step routine in GeoClaw": [[15, "b4step-routine-in-geoclaw"]], "Boundary conditions": [[16, "boundary-conditions"], [170, "boundary-conditions"]], "Boundary conditions for adaptive refinement": [[16, "boundary-conditions-for-adaptive-refinement"]], "Boundary conditions for GeoClaw": [[16, "boundary-conditions-for-geoclaw"]], "Boundary conditions for clamshell grids on the sphere": [[16, "boundary-conditions-for-clamshell-grids-on-the-sphere"]], "User-defined boundary conditions": [[16, "user-defined-boundary-conditions"]], "Bibliography": [[17, "bibliography"]], "Papers describing the Clawpack software and algorithms": [[17, "papers-describing-the-clawpack-software-and-algorithms"]], "Papers describing applications": [[17, "papers-describing-applications"]], "Other references": [[17, "other-references"]], "Boussinesq solvers in One Space Dimension": [[18, "boussinesq-solvers-in-one-space-dimension"]], "Using the 1d Boussinesq code": [[18, "using-the-1d-boussinesq-code"]], "Makefile": [[18, "makefile"], [19, "makefile"]], "setrun.py": [[18, "setrun-py"], [19, "setrun-py"]], "Boussinesq solvers in Two Space Dimensions": [[19, "boussinesq-solvers-in-two-space-dimensions"]], "Boussinesq-type dispersive equations": [[19, "boussinesq-type-dispersive-equations"]], "The SGN equations": [[19, "the-sgn-equations"]], "The Madsen-Sorensen (MS) equations": [[19, "the-madsen-sorensen-ms-equations"]], "Using the 2d Boussinesq code": [[19, "using-the-2d-boussinesq-code"]], "Prerequisites for the 2d Boussinesq code": [[19, "prerequisites-for-the-2d-boussinesq-code"]], "Wave breaking and switching to SWE": [[19, "wave-breaking-and-switching-to-swe"]], "Examples": [[19, "examples"], [42, "examples"], [47, "examples"], [70, "examples"], [96, "examples"], [142, "examples"]], "Changes to master since v5.10.0": [[20, "changes-to-master-since-v5-10-0"]], "Changes that are not backward compatible": [[20, "changes-that-are-not-backward-compatible"], [118, "changes-that-are-not-backward-compatible"], [127, "changes-that-are-not-backward-compatible"], [128, "changes-that-are-not-backward-compatible"], [129, "changes-that-are-not-backward-compatible"], [130, "changes-that-are-not-backward-compatible"], [131, "changes-that-are-not-backward-compatible"], [132, "changes-that-are-not-backward-compatible"], [133, "changes-that-are-not-backward-compatible"], [134, "changes-that-are-not-backward-compatible"], [135, "changes-that-are-not-backward-compatible"]], "General changes": [[20, "general-changes"], [127, "general-changes"], [128, "general-changes"], [129, "general-changes"], [130, "general-changes"], [131, "general-changes"], [132, "general-changes"], [133, "general-changes"], [134, "general-changes"], [135, "general-changes"], [137, "general-changes"]], "Changes to classic": [[20, "changes-to-classic"], [118, "changes-to-classic"], [119, "changes-to-classic"], [120, "changes-to-classic"], [121, "changes-to-classic"], [122, "changes-to-classic"], [123, "changes-to-classic"], [124, "changes-to-classic"], [125, "changes-to-classic"], [126, "changes-to-classic"], [127, "changes-to-classic"], [128, "changes-to-classic"], [129, "changes-to-classic"], [130, "changes-to-classic"], [131, "changes-to-classic"], [132, "changes-to-classic"], [133, 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"fortran-package-changes"]], "Changes to input parameters in setrun.py from 4.x to 5.0": [[24, "changes-to-input-parameters-in-setrun-py-from-4-x-to-5-0"]], "Changes to general parameters": [[24, "changes-to-general-parameters"]], "Changes to AMR parameters": [[24, "changes-to-amr-parameters"]], "Changes to GeoClaw parameters": [[24, "changes-to-geoclaw-parameters"]], "Changes to plotting routines": [[24, "changes-to-plotting-routines"]], "Clawpack components": [[25, "clawpack-components"]], "Other repositories": [[25, "other-repositories"]], "Clawpack Community": [[26, "clawpack-community"]], "User Workshops, Clinics, and Tutorials": [[26, "user-workshops-clinics-and-tutorials"]], "Available for streaming": [[26, "available-for-streaming"]], "Upcoming": [[26, "upcoming"], [26, "id1"]], "Recent": [[26, "recent"]], "Developer Workshops and Sprint Sessions": [[26, "developer-workshops-and-sprint-sessions"]], "Previous": [[26, "previous"]], "Other Clawpack events": [[26, "other-clawpack-events"]], "Contents": [[27, "id1"], [30, "contents"], [42, "contents"], [70, "contents"], [82, "contents"], [88, "contents"], [98, "contents"], [104, "contents"], [116, "contents"], [142, "contents"]], "Full Table of Contents": [[27, "full-table-of-contents"]], "Overview and Getting Started": [[27, "overview-and-getting-started"]], "Examples and Applications": [[27, "examples-and-applications"]], "Classic, AMRClaw, and GeoClaw": [[27, "classic-amrclaw-and-geoclaw"]], "Using the Fortran codes": [[27, "using-the-fortran-codes"]], "AMRClaw: adaptive mesh refinement": [[27, "amrclaw-adaptive-mesh-refinement"]], "GeoClaw: geophysical flows": [[27, "geoclaw-geophysical-flows"]], "PyClaw": [[27, "pyclaw"], [38, "pyclaw"], [96, "pyclaw"], [116, "pyclaw"], [160, "pyclaw"]], "Riemann": [[27, "riemann"]], "VisClaw: Plotting and Visualization Tools": [[27, "visclaw-plotting-and-visualization-tools"]], "Migrating applications from older versions of Clawpack": [[27, "migrating-applications-from-older-versions-of-clawpack"]], "Developers\u2019 resources": [[27, "developers-resources"]], "References": [[27, "references"], [56, "references"]], "Contributing examples and applications": [[28, "contributing-examples-and-applications"]], "current_data": [[29, "current-data"]], "Attributes of current_data:": [[29, "attributes-of-current-data"]], "Developers\u2019 Guide": [[30, "developers-guide"]], "Guidelines for contributing": [[30, "guidelines-for-contributing"]], "Reporting and fixing bugs": [[30, "reporting-and-fixing-bugs"]], "Developer communication": [[30, "developer-communication"]], "Installation instructions for developers": [[30, "installation-instructions-for-developers"]], "Cloning the most recent code from Github": [[30, "cloning-the-most-recent-code-from-github"]], "Checking out the master branch on each repository": [[30, "checking-out-the-master-branch-on-each-repository"]], "Updating to the latest master branch": [[30, "updating-to-the-latest-master-branch"]], "Never commit to master": [[30, "never-commit-to-master"]], "Adding your fork as a remote": [[30, "adding-your-fork-as-a-remote"]], "Modifying code": [[30, "modifying-code"]], "Issuing a pull request": [[30, "issuing-a-pull-request"]], "Testing a pull request": [[30, "testing-a-pull-request"]], "Top-level pull requests": [[30, "top-level-pull-requests"]], "Git workflow": [[30, "git-workflow"]], "Catching errors with Pyflakes and Pylint": [[30, "catching-errors-with-pyflakes-and-pylint"]], "Checking test coverage": [[30, "checking-test-coverage"]], "Trouble-Shooting Tips": [[30, "trouble-shooting-tips"]], "Docker for Clawpack": [[31, "docker-for-clawpack"]], "Using Version 5.9.0 or above": [[31, "using-version-5-9-0-or-above"]], "Getting started": [[31, "getting-started"]], "Stopping a container": [[31, "stopping-a-container"]], "Restarting a container": [[31, "restarting-a-container"]], "Running Jupyter notebooks": [[31, "running-jupyter-notebooks"]], "Moving files between the docker container and the host machine": [[31, "moving-files-between-the-docker-container-and-the-host-machine"]], "Some other useful docker commands": [[31, "some-other-useful-docker-commands"]], "Creating your own docker image": [[31, "creating-your-own-docker-image"]], "Dockerfiles for binder": [[31, "dockerfiles-for-binder"]], "dtopotools module for moving topography": [[32, "dtopotools-module-for-moving-topography"]], "Documentation auto-generated from the module docstrings": [[32, "module-clawpack.geoclaw.dtopotools"], [35, "module-clawpack.geoclaw.fgmax_tools"], [37, "module-clawpack.geoclaw.fgout_tools"], [51, "module-clawpack.geoclaw.util"], [63, "module-clawpack.geoclaw.kmltools"], [164, "module-clawpack.geoclaw.topotools"]], "Fortran 77 vs. Fortran 90 files": [[33, "fortran-77-vs-fortran-90-files"]], "Fixed grid monitoring (fgmax)": [[34, "fixed-grid-monitoring-fgmax"]], "Input file specification": [[34, "input-file-specification"], [36, "input-file-specification"]], "Different point styles": [[34, "different-point-styles"]], "Other attributes": [[34, "other-attributes"]], "Values to monitor": [[34, "values-to-monitor"]], "Choice of interpolation procedure": [[34, "choice-of-interpolation-procedure"], [36, "choice-of-interpolation-procedure"]], "A simple example": [[34, "a-simple-example"], [36, "a-simple-example"]], "Processing and plotting fgmax output": [[34, "processing-and-plotting-fgmax-output"]], "Format of the output files": [[34, "format-of-the-output-files"]], "fgmax examples": [[34, "fgmax-examples"]], "fgmax_tools module for working with fgmax grids": [[35, "fgmax-tools-module-for-working-with-fgmax-grids"]], "Fixed grid output (fgout)": [[36, "fixed-grid-output-fgout"]], "Format of fgout output": [[36, "format-of-fgout-output"]], "Using setplot.py to produce plots": [[36, "using-setplot-py-to-produce-plots"]], "Reading and plotting fgout arrays directly": [[36, "reading-and-plotting-fgout-arrays-directly"]], "fgout grid registration": [[36, "fgout-grid-registration"]], "fgout examples": [[36, "fgout-examples"]], "fgout_tools module for working with fgout grids": [[37, "fgout-tools-module-for-working-with-fgout-grids"]], "Running an example": [[38, "running-an-example"], [39, "running-an-example"], [40, "running-an-example"]], "Classic": [[38, "classic"], [39, "classic"], [160, "classic"]], "Testing your Fortran installation and running an example": [[39, "testing-your-fortran-installation-and-running-an-example"]], "More examples": [[39, "more-examples"]], "Testing a PyClaw installation and running an example": [[40, "testing-a-pyclaw-installation-and-running-an-example"]], "From the Jupyter notebook": [[40, "from-the-jupyter-notebook"]], "From the IPython interpreter": [[40, "from-the-ipython-interpreter"]], "From the command line": [[40, "from-the-command-line"], [93, "from-the-command-line"]], "Specifying flagregions for adaptive refinement": [[41, "specifying-flagregions-for-adaptive-refinement"]], "Using ruled rectangles as flagregions": [[41, "using-ruled-rectangles-as-flagregions"]], "Force Cells to be Dry Initially": [[42, "force-cells-to-be-dry-initially"]], "Sample topography from a 1/3 arcsecond DEM": [[42, "sample-topography-from-a-1-3-arcsecond-dem"], [70, "sample-topography-from-a-1-3-arcsecond-dem"]], "Creating the force_dry_init array": [[42, "creating-the-force-dry-init-array"]], "Create file to read into GeoClaw": [[42, "create-file-to-read-into-geoclaw"]], "Usage in GeoClaw Fortran code": [[42, "usage-in-geoclaw-fortran-code"]], "Internal GeoClaw modifications": [[42, "internal-geoclaw-modifications"]], "Fortran version": [[43, "fortran-version"]], "Makefiles": [[43, "makefiles"]], "More tips": [[43, "more-tips"]], "Fortran Compilers": [[44, "fortran-compilers"]], "FC environment variable": [[44, "fc-environment-variable"]], "FFLAGS environment variable": [[44, "fflags-environment-variable"]], "LFLAGS environment variable": [[44, "lflags-environment-variable"]], "Pre-Processor and the PPFLAGS environment variable": [[44, "pre-processor-and-the-ppflags-environment-variable"]], "gfortran compiler": [[44, "gfortran-compiler"]], "Intel fortran compiler": [[44, "intel-fortran-compiler"]], "Examples from the book FVMHP": [[45, "examples-from-the-book-fvmhp"]], "Available examples": [[45, "available-examples"]], "YouTube Videos": [[45, "youtube-videos"]], "Clawpack Gallery": [[46, "clawpack-gallery"]], "Gauges": [[47, "gauges"]], "Gauge parameters in setrun": [[47, "gauge-parameters-in-setrun"]], "Plotting tools": [[47, "plotting-tools"]], "Plotting gauge locations": [[47, "plotting-gauge-locations"]], "GeoClaw Description and Detailed Contents": [[48, "geoclaw-description-and-detailed-contents"]], "GeoClaw in One Space Dimension": [[49, "geoclaw-in-one-space-dimension"]], "Coordinate systems": [[49, "coordinate-systems"]], "Uniform and mapped grids": [[49, "uniform-and-mapped-grids"]], "Topograpy data": [[49, "topograpy-data"]], "Moving topograpy (dtopo) data": [[49, "moving-topograpy-dtopo-data"]], "Getting started with GeoClaw": [[50, "getting-started-with-geoclaw"]], "Running a GeoClaw code": [[50, "running-a-geoclaw-code"]], "Topography": [[50, "topography"]], "Plotting GeoClaw results": [[50, "plotting-geoclaw-results"]], "Setting up a new example": [[50, "setting-up-a-new-example"]], "geoclaw.util module of utility functions": [[51, "geoclaw-util-module-of-utility-functions"]], "Cautionary Hints on using GeoClaw": [[52, "cautionary-hints-on-using-geoclaw"]], "Tsunami hazard modeling": [[52, "tsunami-hazard-modeling"]], "GeoClaw plotting tools": [[53, "geoclaw-plotting-tools"]], "Plotting water depth or surface elevation": [[53, "plotting-water-depth-or-surface-elevation"]], "Tips on latitude-longitude coordinate axes": [[53, "tips-on-latitude-longitude-coordinate-axes"]], "Keeping track of repository versions with Git": [[54, "keeping-track-of-repository-versions-with-git"]], "Visualizing GeoClaw results in Google Earth": [[55, "visualizing-geoclaw-results-in-google-earth"]], "Basic requirements": [[55, "basic-requirements"]], "Optional GDAL library": [[55, "optional-gdal-library"]], "An example : The Chile 2010 tsunami event": [[55, "an-example-the-chile-2010-tsunami-event"]], "Plotting attributes needed for Google Earth": [[55, "plotting-attributes-needed-for-google-earth"]], "plotdata attributes": [[55, "plotdata-attributes"]], "plotfigure attributes": [[55, "plotfigure-attributes"]], "Creating the figures": [[55, "creating-the-figures"]], "plotaxes attributes": [[55, "plotaxes-attributes"]], "plotitem attributes": [[55, "plotitem-attributes"]], "Adding a colorbar overlay": [[55, "adding-a-colorbar-overlay"]], "Gauge plots": [[55, "gauge-plots"]], "Additional plotdata attributes": [[55, "additional-plotdata-attributes"]], "Plotting tips": [[55, "plotting-tips"]], "KML and KMZ files": [[55, "kml-and-kmz-files"]], "Tiling images for faster loading": [[55, "tiling-images-for-faster-loading"]], "Removing aliasing artifacts": [[55, "removing-aliasing-artifacts"]], "Creating multiple figures at different resolutions": [[55, "creating-multiple-figures-at-different-resolutions"]], "Mapping topography data to latitude/longitude coordinates": [[55, "mapping-topography-data-to-latitude-longitude-coordinates"]], "Publishing your results": [[55, "id1"]], "Using the GPU version of Clawpack": [[56, "using-the-gpu-version-of-clawpack"]], "Grid registration": [[57, "grid-registration"]], "NetCDF files": [[57, "netcdf-files"]], "Guide for updating this documentation": [[58, "guide-for-updating-this-documentation"]], "Git branches and tags": [[58, "git-branches-and-tags"]], "Configuration and style files": [[58, "configuration-and-style-files"]], "Updating the docs for a new release": [[58, "updating-the-docs-for-a-new-release"]], "To generate docs including previous versions": [[58, "to-generate-docs-including-previous-versions"]], "Updating for a new major version": [[58, "updating-for-a-new-major-version"]], "Updating the gallery": [[58, "updating-the-gallery"]], "Updating the webpages": [[58, "updating-the-webpages"]], "Extra files for webpages not built by Sphinx": [[58, "extra-files-for-webpages-not-built-by-sphinx"]], "Pages from other clawpack repositories": [[58, "pages-from-other-clawpack-repositories"]], "Guide for doing a Clawpack release": [[59, "guide-for-doing-a-clawpack-release"]], "Preparation": [[59, "preparation"]], "Version numbers": [[59, "version-numbers"]], "Release candidates": [[59, "release-candidates"]], "Create a tar file and a Github release": [[59, "create-a-tar-file-and-a-github-release"]], "Final release": [[59, "final-release"]], "Pypi": [[59, "pypi"]], "Zenodo": [[59, "zenodo"]], "Open Science Framework (OSF)": [[59, "open-science-framework-osf"]], "Updating the documentation": [[59, "updating-the-documentation"]], "Updating the apps repository": [[59, "updating-the-apps-repository"]], "Updating the Dockerfile": [[59, "updating-the-dockerfile"]], "Installing Clawpack": [[60, "installing-clawpack"]], "Next steps:": [[60, "next-steps"], [61, "next-steps"], [62, "next-steps"]], "Options for installing Clawpack Fortran codes": [[61, "options-for-installing-clawpack-fortran-codes"]], "tar file": [[61, "tar-file"]], "git clone": [[61, "git-clone"]], "pip install instructions": [[62, "pip-install-instructions"]], "Quick Installation of PyClaw with pip": [[62, "quick-installation-of-pyclaw-with-pip"]], "Quick Installation of all packages with pip": [[62, "quick-installation-of-all-packages-with-pip"]], "Using pip to install a different version": [[62, "using-pip-to-install-a-different-version"]], "Experimenting with code in the examples directories": [[62, "experimenting-with-code-in-the-examples-directories"]], "Troubleshooting pip install": [[62, "troubleshooting-pip-install"]], "kmltools module of utility functions": [[63, "kmltools-module-of-utility-functions"]], "Lagrangian gauges for particle tracking": [[64, "lagrangian-gauges-for-particle-tracking"]], "Specifying Lagrangian Gauges": [[64, "specifying-lagrangian-gauges"]], "Visclaw tools for plotting": [[64, "visclaw-tools-for-plotting"]], "An alternative using fgout grids": [[64, "an-alternative-using-fgout-grids"]], "Clawpack Makefiles": [[66, "clawpack-makefiles"]], "Applications directory Makefiles": [[66, "applications-directory-makefiles"]], "output": [[66, "output"]], "plots": [[66, "plots"]], "Variables": [[66, "variables"]], "Compiler flags": [[66, "compiler-flags"]], "Duplicate Base Source Name": [[66, "duplicate-base-source-name"]], "Library routines in Makefiles": [[67, "library-routines-in-makefiles"]], "Replacing files with the same name as library files": [[67, "replacing-files-with-the-same-name-as-library-files"]], "Using a modified library routine with a different name": [[67, "using-a-modified-library-routine-with-a-different-name"]], "Manning friction term": [[68, "manning-friction-term"]], "The mapc2p function": [[69, "the-mapc2p-function"]], "Marching Front algorithm": [[70, "marching-front-algorithm"]], "Function arguments": [[70, "function-arguments"]], "output array": [[70, "output-array"]], "creating a masked array": [[70, "creating-a-masked-array"]], "topofile mask for initializing dry points": [[70, "topofile-mask-for-initializing-dry-points"]], "fgmax points": [[70, "fgmax-points"]], "flag regions": [[70, "flag-regions"]], "The mask argument": [[70, "the-mask-argument"]], "The previous_pts_chosen argument": [[70, "the-previous-pts-chosen-argument"]], "Finding all points below a given elevation": [[70, "finding-all-points-below-a-given-elevation"]], "Create a buffer zone along shore": [[70, "create-a-buffer-zone-along-shore"]], "Choose points only near shore": [[70, "choose-points-only-near-shore"]], "Write out the masked array indicating fgmax points": [[70, "write-out-the-masked-array-indicating-fgmax-points"]], "Creating an AMR flag region": [[70, "creating-an-amr-flag-region"]], "Determining dry areas below MHW": [[70, "determining-dry-areas-below-mhw"]], "Plotting using Matlab": [[71, "plotting-using-matlab"]], "The Matlab search path": [[71, "the-matlab-search-path"]], "Creating output files": [[71, "creating-output-files"]], "The plotclaw command": [[71, "the-plotclaw-command"]], "The setplot file": [[71, "the-setplot-file"]], "The afterframe file": [[71, "the-afterframe-file"]], "Getting help": [[71, "getting-help"]], "Trouble shooting": [[71, "trouble-shooting"]], "Output files not found": [[71, "output-files-not-found"]], "MaxFrames not set": [[71, "maxframes-not-set"]], "Switching examples": [[71, "switching-examples"]], "Matlab Gallery": [[71, "matlab-gallery"]], "Nearshore interpolation": [[72, "nearshore-interpolation"]], "Using NetCDF output": [[73, "using-netcdf-output"]], "Creating a new application directory": [[74, "creating-a-new-application-directory"]], "Copying an existing example": [[74, "copying-an-existing-example"]], "Earthquake sources: Fault slip and the Okada model": [[75, "earthquake-sources-fault-slip-and-the-okada-model"]], "Fault slip on rectangular subfaults": [[75, "fault-slip-on-rectangular-subfaults"]], "Okada model": [[75, "okada-model"]], "Kinematic rupture": [[75, "kinematic-rupture"]], "Fault slip on triangular subfaults": [[75, "fault-slip-on-triangular-subfaults"]], "Using OpenMP": [[76, "using-openmp"]], "Using OpenMP with AMR": [[76, "using-openmp-with-amr"]], "Fixed grid output in GeoClaw": [[76, "fixed-grid-output-in-geoclaw"]], "Output data sytles and formats": [[77, "output-data-sytles-and-formats"]], "Output style": [[77, "output-style"]], "Output data formats": [[77, "output-data-formats"]], "ASCII output data format": [[77, "ascii-output-data-format"]], "fort.t0002": [[77, "fort-t0002"]], "fort.q0002": [[77, "fort-q0002"]], "Raw binary output data formats": [[77, "raw-binary-output-data-formats"]], "NetCDF output data format": [[77, "netcdf-output-data-format"]], "Output of aux arrays": [[77, "output-of-aux-arrays"]], "Which Clawpack solver should I use?": [[78, "which-clawpack-solver-should-i-use"]], "Installation and user interface": [[78, "installation-and-user-interface"]], "Algorithmic differences": [[78, "algorithmic-differences"]], "Parallel computing": [[78, "parallel-computing"]], "Clawpack Community Photos": [[79, "clawpack-community-photos"]], "2016 Developers\u2019 workshop at University of Washington": [[79, "id1"]], "2015 Developers\u2019 workshop at University of Utah": [[79, "id2"]], "2014 HPC3 workshop at KAUST": [[79, "id3"]], "2013 Claw-Dev workshop at UW": [[79, "id4"]], "2012 HPC3 workshop at KAUST": [[79, "id6"]], "2011 coding sprints at UW": [[79, "coding-sprints-at-uw"]], "2010 GeoClaw hacking UW": [[79, "geoclaw-hacking-uw"]], "Plotting examples": [[80, "plotting-examples"]], "Plotting with Visclaw": [[81, "plotting-with-visclaw"]], "Plotting as post-processing": [[81, "plotting-as-post-processing"]], "Plotting on the fly": [[81, "plotting-on-the-fly"]], "Plotting hints and FAQ": [[82, "plotting-hints-and-faq"]], "What\u2019s the difference between make .plots and make plots ?": [[82, "what-s-the-difference-between-make-plots-and-make-plots"]], "How to plot a something other than a component of q?": [[82, "how-to-plot-a-something-other-than-a-component-of-q"]], "How to add another curve to a plot, e.g. the true solution?": [[82, "how-to-add-another-curve-to-a-plot-e-g-the-true-solution"]], "How to change the title in a plot?": [[82, "how-to-change-the-title-in-a-plot"]], "How to specify outdir, the directory to find fort.* files for plotting?": [[82, "how-to-specify-outdir-the-directory-to-find-fort-files-for-plotting"]], "How to specify a different outdir for some plot item?": [[82, "how-to-specify-a-different-outdir-for-some-plot-item"]], "How to set plot parameters that are not provided as attributes of ClawPlotItem?": [[82, "how-to-set-plot-parameters-that-are-not-provided-as-attributes-of-clawplotitem"]], "How to change the size or background color of a figure?": [[82, "how-to-change-the-size-or-background-color-of-a-figure"]], "Specifying colormaps for pcolor or contourf plots": [[82, "specifying-colormaps-for-pcolor-or-contourf-plots"]], "How to debug setplot.py?": [[82, "how-to-debug-setplot-py"]], "Plotting routines for GeoClaw": [[83, "plotting-routines-for-geoclaw"]], "Plotting options in Python": [[84, "plotting-options-in-python"]], "Producing html plots from the command line": [[84, "producing-html-plots-from-the-command-line"]], "Producing a latex file with plots from the command line": [[84, "producing-a-latex-file-with-plots-from-the-command-line"]], "Setting plot parameters with a setplot function": [[84, "setting-plot-parameters-with-a-setplot-function"]], "Interactive plotting with Iplotclaw": [[84, "interactive-plotting-with-iplotclaw"]], "Access to current_data": [[84, "access-to-current-data"]], "printframes": [[84, "printframes"]], "Specifying what and how to plot": [[84, "specifying-what-and-how-to-plot"]], "Installation Prerequisites": [[85, "installation-prerequisites"]], "Operating system": [[85, "operating-system"]], "Fortran": [[85, "fortran"]], "Python": [[85, "python"]], "pip": [[85, "pip"]], "Git": [[85, "git"]], "About PyClaw": [[86, "about-pyclaw"]], "Contributors": [[86, "contributors"]], "PyClaw Basics": [[87, "pyclaw-basics"]], "Understanding Pyclaw Classes": [[88, "understanding-pyclaw-classes"]], "Flow of a Pyclaw Simulation": [[88, "flow-of-a-pyclaw-simulation"]], "Creation of a Pyclaw Solution": [[88, "creation-of-a-pyclaw-solution"]], "Creation of a Pyclaw Solver": [[88, "creation-of-a-pyclaw-solver"]], "Creating and Running a Simulation with Controller": [[88, "creating-and-running-a-simulation-with-controller"]], "Restarting a simulation": [[88, "restarting-a-simulation"]], "Outputting aux values": [[88, "outputting-aux-values"]], "Outputting derived quantities": [[88, "outputting-derived-quantities"], [98, "outputting-derived-quantities"]], "Porting a problem from Clawpack 4.6.x to PyClaw": [[89, "porting-a-problem-from-clawpack-4-6-x-to-pyclaw"]], "Running PyClaw in the cloud": [[90, "running-pyclaw-in-the-cloud"]], "Sage Math Cloud": [[90, "sage-math-cloud"]], "Pyclaw Controller Class": [[91, "pyclaw-controller-class"]], "pyclaw.controller.Controller": [[91, "pyclaw-controller-controller"]], "Pyclaw Limiters": [[92, "pyclaw-limiters"]], "clawpack.pyclaw.limiters.tvd": [[92, "module-clawpack.pyclaw.limiters.tvd"]], "CFL Independent Limiters": [[92, "cfl-independent-limiters"]], "CFL Dependent Limiters": [[92, "cfl-dependent-limiters"]], "Working with PyClaw\u2019s built-in examples": [[93, "working-with-pyclaw-s-built-in-examples"]], "Running and plotting examples": [[93, "running-and-plotting-examples"]], "Interactively in IPython": [[93, "interactively-in-ipython"]], "Built-in examples": [[93, "built-in-examples"]], "Adding new examples": [[93, "adding-new-examples"]], "PyClaw Geometry": [[94, "pyclaw-geometry"]], "Serial Geometry Objects": [[94, "serial-geometry-objects"]], "pyclaw.geometry.Domain": [[94, "pyclaw-geometry-domain"]], "pyclaw.geometry.Patch": [[94, "pyclaw-geometry-patch"]], "pyclaw.geometry.Grid": [[94, "pyclaw-geometry-grid"]], "pyclaw.geometry.Dimension": [[94, "pyclaw-geometry-dimension"]], "Parallel Geometry Objects": [[94, "parallel-geometry-objects"]], "petclaw.geometry.Domain": [[94, "petclaw-geometry-domain"]], "petclaw.geometry.Patch": [[94, "petclaw-geometry-patch"]], "Going Further": [[95, "going-further"]], "PyClaw installation": [[96, "pyclaw-installation"]], "Features": [[96, "features"]], "PyClaw Documentation": [[96, "pyclaw-documentation"]], "PyClaw Modules reference documentation": [[96, "pyclaw-modules-reference-documentation"]], "Riemann Solvers reference documentation": [[96, "riemann-solvers-reference-documentation"]], "Indices and tables": [[96, "indices-and-tables"]], "Citing PyClaw": [[96, "citing-pyclaw"]], "Pyclaw Input/Output Package": [[97, "pyclaw-input-output-package"]], "pyclaw.fileio.ascii": [[97, "module-clawpack.pyclaw.fileio.ascii"]], "pyclaw.fileio.binary": [[97, "module-clawpack.pyclaw.fileio.binary"]], "pyclaw.fileio.hdf5": [[97, "module-clawpack.pyclaw.fileio.hdf5"]], "pyclaw.fileio.netcdf": [[97, "module-clawpack.pyclaw.fileio.netcdf"]], "PyClaw output": [[98, "pyclaw-output"]], "Output frames": [[98, "output-frames"]], "When output is saved/written": [[98, "when-output-is-saved-written"]], "Where and how output is written": [[98, "where-and-how-output-is-written"]], "What output is written": [[98, "what-output-is-written"]], "Outputting functionals": [[98, "outputting-functionals"]], "Using gauges": [[98, "using-gauges"]], "Logging": [[98, "logging"]], "Running in parallel": [[99, "running-in-parallel"]], "Installing PETSc": [[99, "installing-petsc"]], "Testing your installation": [[99, "testing-your-installation"], [160, "testing-your-installation"]], "Running and plotting an example": [[99, "running-and-plotting-an-example"]], "Tips for making your application run correctly in parallel": [[99, "tips-for-making-your-application-run-correctly-in-parallel"]], "Passing options to PETSc": [[99, "passing-options-to-petsc"]], "Plotting PyClaw results": [[100, "plotting-pyclaw-results"]], "Basics": [[100, "basics"]], "Plotting result from parallel runs": [[100, "plotting-result-from-parallel-runs"]], "Setting up your own problem": [[101, "setting-up-your-own-problem"]], "Writing the initialization script": [[101, "writing-the-initialization-script"]], "Setting initial conditions": [[101, "setting-initial-conditions"]], "Setting auxiliary variables": [[101, "setting-auxiliary-variables"]], "Setting boundary conditions": [[101, "setting-boundary-conditions"]], "Setting solver options": [[101, "setting-solver-options"]], "Using your own Riemann solver": [[101, "using-your-own-riemann-solver"]], "Adding source terms": [[101, "adding-source-terms"]], "Setting up the Makefile": [[101, "setting-up-the-makefile"]], "Riemann Solver Package": [[102, "riemann-solver-package"]], "Acoustics": [[102, "acoustics"]], "Advection": [[102, "advection"]], "Burgers Equation": [[102, "burgers-equation"]], "Euler Equations": [[102, "euler-equations"]], "Shallow Water Equations": [[102, "shallow-water-equations"]], "PyClaw Solutions": [[103, "pyclaw-solutions"]], "pyclaw.solution.Solution": [[103, "pyclaw-solution-solution"]], "Using PyClaw\u2019s solvers: Classic and SharpClaw": [[104, "using-pyclaw-s-solvers-classic-and-sharpclaw"]], "SharpClaw Solvers": [[104, "sharpclaw-solvers"]], "pyclaw.sharpclaw": [[104, "pyclaw-sharpclaw"]], "Pyclaw Classic Clawpack Solvers": [[104, "pyclaw-classic-clawpack-solvers"]], "pyclaw.classic.solver": [[104, "pyclaw-classic-solver"]], "Change to Custom BC Function Signatures": [[104, "change-to-custom-bc-function-signatures"]], "Installing PyClaw": [[105, "installing-pyclaw"]], "Dependencies: Python, gfortran, numpy, and matplotlib": [[105, "dependencies-python-gfortran-numpy-and-matplotlib"]], "Obtaining Python, numpy, and matplotlib": [[105, "obtaining-python-numpy-and-matplotlib"]], "Clawpack": [[105, "clawpack"]], "Testing your installation with nose": [[105, "testing-your-installation-with-nose"]], "Next steps": [[105, "next-steps"]], "PyClaw State": [[106, "pyclaw-state"]], "Serial pyclaw.state.State": [[106, "serial-pyclaw-state-state"]], "Parallel petclaw.state.State": [[106, "parallel-petclaw-state-state"]], "Troubleshooting": [[107, "troubleshooting"], [165, "troubleshooting"]], "Compilation errors": [[107, "compilation-errors"]], "Use Fortran-ordered arrays": [[107, "use-fortran-ordered-arrays"]], "Installation": [[107, "installation"]], "PyClaw tutorial: Solve the acoustics equations": [[108, "pyclaw-tutorial-solve-the-acoustics-equations"]], "The Solver": [[108, "the-solver"]], "The domain": [[108, "the-domain"]], "Initial condition": [[108, "initial-condition"]], "Problem-specific parameters": [[108, "problem-specific-parameters"]], "The controller": [[108, "the-controller"]], "Pyclaw Utility Module": [[109, "pyclaw-utility-module"]], "pyclaw.util": [[109, "module-clawpack.pyclaw.util"]], "Python Hints": [[110, "python-hints"]], "Dropping support for Python 2.7": [[110, "dropping-support-for-python-2-7"]], "References and tutorials": [[110, "references-and-tutorials"]], "Notebooks": [[110, "notebooks"]], "Python path": [[111, "python-path"]], "whichclaw.py": [[111, "whichclaw-py"]], "Which version was imported?": [[111, "which-version-was-imported"]], "sys.path": [[111, "sys-path"]], "easy-install.pth": [[111, "easy-install-pth"]], "PYTHONPATH": [[111, "pythonpath"], [146, "pythonpath"]], "qinit default routines": [[112, "qinit-default-routines"]], "qinit routine in GeoClaw": [[112, "qinit-routine-in-geoclaw"]], "Quick start guide for storm surge modeling": [[113, "quick-start-guide-for-storm-surge-modeling"]], "Quick start guide for tsunami modeling": [[114, "quick-start-guide-for-tsunami-modeling"]], "AMR refinement criteria": [[115, "amr-refinement-criteria"]], "Flagging criteria": [[115, "flagging-criteria"]], "flag2refine": [[115, "flag2refine"]], "Richardson extrapolation": [[115, "richardson-extrapolation"]], "Specifying AMR regions": [[115, "specifying-amr-regions"]], "Implementation": [[115, "implementation"]], "Flagging criteria in GeoClaw": [[115, "flagging-criteria-in-geoclaw"]], "Regression testing": [[116, "regression-testing"]], "Running the tests": [[116, "running-the-tests"], [116, "id2"]], "Fortran codes": [[116, "fortran-codes"]], "Travis continuous integration": [[116, "travis-continuous-integration"]], "Diff tools for checking test output": [[116, "diff-tools-for-checking-test-output"]], "chardiff tool for line-by-line comparison of output files": [[116, "chardiff-tool-for-line-by-line-comparison-of-output-files"]], "imagediff tool for pixel comparison of plots": [[116, "imagediff-tool-for-pixel-comparison-of-plots"]], "Running and writing tests in PyClaw": [[116, "running-and-writing-tests-in-pyclaw"]], "Running serial tests simultaneously": [[116, "running-serial-tests-simultaneously"]], "Running a specific test": [[116, "running-a-specific-test"]], "Doctests": [[116, "doctests"]], "Writing New Tests": [[116, "writing-new-tests"]], "v5.0.0 release notes": [[117, "v5-0-0-release-notes"]], "Changes to classic, riemann, amrclaw, geoclaw, visclaw": [[117, "changes-to-classic-riemann-amrclaw-geoclaw-visclaw"]], "v5.10.0 release notes": [[118, "v5-10-0-release-notes"]], "v5.1.0 release notes": [[119, "v5-1-0-release-notes"]], "v5.2.0 release notes": [[120, "v5-2-0-release-notes"]], "v5.2.1 release notes": [[121, "v5-2-1-release-notes"]], "v5.2.2 release notes": [[122, "v5-2-2-release-notes"]], "v5.3.0 release notes": [[123, "v5-3-0-release-notes"]], "v5.3.1 release notes": [[124, "v5-3-1-release-notes"]], "v5.4.0 release notes": [[125, "v5-4-0-release-notes"]], "Global changes": [[125, "global-changes"]], "v5.4.1 release notes": [[126, "v5-4-1-release-notes"]], "Changes to documentation": [[126, "changes-to-documentation"], [127, "changes-to-documentation"]], "v5.5.0 release notes": [[127, "v5-5-0-release-notes"]], "v5.6.0 release notes": [[128, "v5-6-0-release-notes"]], "v5.6.1 release notes": [[129, "v5-6-1-release-notes"]], "v5.7.0 release notes": [[130, "v5-7-0-release-notes"]], "Python support": [[130, "python-support"]], "v5.7.1 release notes": [[131, "v5-7-1-release-notes"]], "v5.8.0 release notes": [[132, "v5-8-0-release-notes"]], "v5.8.1 release notes": [[133, "v5-8-1-release-notes"]], "v5.8.2 release notes": [[134, "v5-8-2-release-notes"]], "v5.9.0 release notes": [[135, "v5-9-0-release-notes"]], "v5.9.1 release notes": [[136, "v5-9-1-release-notes"]], "v5.9.2 release notes": [[137, "v5-9-2-release-notes"]], "Releases of Clawpack and release notes": [[138, "releases-of-clawpack-and-release-notes"]], "Other notes:": [[138, "other-notes"]], "Releases:": [[138, "id1"]], "Clawpack 4.x": [[138, "clawpack-4-x"]], "Checkpointing and restarting": [[139, "checkpointing-and-restarting"]], "Checkpointing a computation": [[139, "checkpointing-a-computation"]], "Restarting a computation": [[139, "restarting-a-computation"]], "Modifying the Makefile for a restart": [[139, "modifying-the-makefile-for-a-restart"]], "Output files after a restart": [[139, "output-files-after-a-restart"]], "Riemann solvers": [[140, "riemann-solvers"]], "One-dimensional Riemann solver": [[140, "one-dimensional-riemann-solver"]], "Pointwise Riemann solvers": [[140, "pointwise-riemann-solvers"]], "f-wave Riemann solvers": [[140, "f-wave-riemann-solvers"]], "2D Riemann solvers": [[140, "d-riemann-solvers"]], "Using a custom solver": [[140, "using-a-custom-solver"]], "Adding a solver to the Riemann repository": [[140, "adding-a-solver-to-the-riemann-repository"]], "Shallow water Riemann solvers in Clawpack": [[141, "shallow-water-riemann-solvers-in-clawpack"]], "One dimension": [[141, "one-dimension"]], "Two dimensions": [[141, "two-dimensions"]], "Layered shallow water equations": [[141, "layered-shallow-water-equations"]], "Potentially useful contributions (what\u2019s missing)": [[141, "potentially-useful-contributions-whats-missing"]], "Demonstrations": [[141, "demonstrations"]], "Roe": [[141, "roe"]], "HLL": [[141, "hll"]], "Ruled Rectangles": [[142, "ruled-rectangles"]], "Relation to convex polygons": [[142, "relation-to-convex-polygons"]], "Other attributes and methods": [[142, "other-attributes-and-methods"]], "ds": [[142, "ds"]], "slu": [[142, "slu"]], "bounding_box": [[142, "bounding-box"]], "mask_outside": [[142, "mask-outside"]], "read and write, and instantiating from a file": [[142, "read-and-write-and-instantiating-from-a-file"]], "make_kml": [[142, "make-kml"]], "A GeoClaw AMR flag region": [[142, "a-geoclaw-amr-flag-region"]], "A simple rectangle": [[142, "a-simple-rectangle"]], "Defining a Ruled Rectangle covering selected cells": [[142, "defining-a-ruled-rectangle-covering-selected-cells"]], "Example covering the continental shelf": [[142, "example-covering-the-continental-shelf"]], "Setting sea_level": [[143, "setting-sea-level"]], "Set Eta Init \u2013 spatially varying initial surface elevation": [[144, "set-eta-init-spatially-varying-initial-surface-elevation"]], "Default behavior, adjusting sea level by seismic deformation": [[144, "default-behavior-adjusting-sea-level-by-seismic-deformation"]], "Other use cases": [[144, "other-use-cases"]], "setaux default routines": [[145, "setaux-default-routines"]], "setaux routine in GeoClaw": [[145, "setaux-routine-in-geoclaw"]], "Set environment variables": [[146, "set-environment-variables"]], "CLAW": [[146, "claw"]], "FC": [[146, "fc"]], "Using setplot.py to specify the desired plots": [[147, "using-setplot-py-to-specify-the-desired-plots"]], "Plotting Data Objects": [[147, "plotting-data-objects"]], "Overview": [[147, "overview"]], "Specifying classic run-time parameters in setrun.py": [[148, "specifying-classic-run-time-parameters-in-setrun-py"]], "Input": [[148, "input"], [149, "input"]], "Output": [[148, "output"], [149, "output"]], "Run-time parameters": [[148, "run-time-parameters"], [149, "run-time-parameters"]], "Specifying AMRClaw run-time parameters in setrun.py": [[149, "specifying-amrclaw-run-time-parameters-in-setrun-py"]], "Special AMR parameters": [[149, "special-amr-parameters"]], "Debugging flags for additional printing": [[149, "debugging-flags-for-additional-printing"]], "Sample setrun.py module for AMRClaw": [[150, "sample-setrun-py-module-for-amrclaw"]], "Specifying GeoClaw parameters in setrun.py": [[151, "specifying-geoclaw-parameters-in-setrun-py"]], "Additional AMR parameters": [[151, "additional-amr-parameters"]], "General geo parameters": [[151, "general-geo-parameters"]], "Topography data file parameters": [[151, "topography-data-file-parameters"]], "qinit data file parameters": [[151, "qinit-data-file-parameters"]], "Force some cells to be initially dry": [[151, "force-some-cells-to-be-initially-dry"]], "Adjust sea level in some regions": [[151, "adjust-sea-level-in-some-regions"]], "AMR refinement region parameters": [[151, "amr-refinement-region-parameters"]], "Deprecated Fixedgrid output parameters": [[151, "deprecated-fixedgrid-output-parameters"]], "Fixed grid maximum monitoring / arrival times": [[151, "fixed-grid-maximum-monitoring-arrival-times"]], "Fixed grid output": [[151, "fixed-grid-output"]], "Storm Specification Data": [[151, "storm-specification-data"]], "Sample setrun.py module for classic Clawpack": [[152, "sample-setrun-py-module-for-classic-clawpack"]], "Saving and sharing results": [[153, "saving-and-sharing-results"]], "Making webpages of plots": [[153, "making-webpages-of-plots"]], "Sharing your results": [[153, "sharing-your-results"]], "Jupyter notebooks": [[153, "jupyter-notebooks"]], "Source terms for shallow water on the sphere": [[154, "source-terms-for-shallow-water-on-the-sphere"]], "Compiling the Sphinx documentation locally": [[155, "compiling-the-sphinx-documentation-locally"]], "src1d default routines": [[156, "src1d-default-routines"]], "src1d routine in GeoClaw": [[156, "src1d-routine-in-geoclaw"]], "src default routines": [[157, "src-default-routines"]], "src routine in GeoClaw": [[157, "src-routine-in-geoclaw"]], "Storm Specification Class and Tools": [[158, "storm-specification-class-and-tools"]], "Sources for Storm Surge Data": [[159, "sources-for-storm-surge-data"]], "Timing Statistics": [[161, "timing-statistics"]], "Topography data": [[162, "topography-data"]], "Downloading topography files": [[162, "downloading-topography-files"]], "NetCDF format": [[162, "netcdf-format"]], "Topography displacement files": [[162, 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"clawpack.geoclaw.dtopotools.SubFault.longitude"]], "longitude (clawpack.geoclaw.dtopotools.subfault1d attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault1d.longitude"]], "module": [[32, "module-clawpack.geoclaw.dtopotools"], [35, "module-clawpack.geoclaw.fgmax_tools"], [37, "module-clawpack.geoclaw.fgout_tools"], [51, "module-clawpack.geoclaw.util"], [63, "module-clawpack.geoclaw.kmltools"], [92, "module-clawpack.pyclaw.limiters.tvd"], [97, "module-clawpack.pyclaw.fileio.ascii"], [97, "module-clawpack.pyclaw.fileio.binary"], [97, "module-clawpack.pyclaw.fileio.hdf5"], [97, "module-clawpack.pyclaw.fileio.netcdf"], [102, "module-clawpack.riemann.acoustics_1D_py"], [102, "module-clawpack.riemann.advection_1D_py"], [102, "module-clawpack.riemann.burgers_1D_py"], [102, "module-clawpack.riemann.euler_1D_py"], [102, "module-clawpack.riemann.shallow_1D_py"], [109, "module-clawpack.pyclaw.util"], [158, "module-clawpack.geoclaw.surge.storm"], [164, "module-clawpack.geoclaw.topotools"]], "mu (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.mu"]], "okada() (clawpack.geoclaw.dtopotools.subfault method)": [[32, "clawpack.geoclaw.dtopotools.SubFault.okada"]], "plot_dz_colors() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.plot_dZ_colors"]], "plot_dz_colors() (in module clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.plot_dZ_colors"]], "plot_dz_contours() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.plot_dZ_contours"]], "plot_dz_contours() (in module clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.plot_dZ_contours"]], "plot_subfaults() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.plot_subfaults"]], "plot_subfaults_depth() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.plot_subfaults_depth"]], "rake (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rake"]], "rake (clawpack.geoclaw.dtopotools.subfault1d attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault1d.rake"]], "read() (clawpack.geoclaw.dtopotools.csvfault method)": [[32, "clawpack.geoclaw.dtopotools.CSVFault.read"]], "read() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.read"]], "read() (clawpack.geoclaw.dtopotools.dtopography1d method)": [[32, "clawpack.geoclaw.dtopotools.DTopography1d.read"]], "read() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.read"]], "read() (clawpack.geoclaw.dtopotools.ucsbfault method)": [[32, "clawpack.geoclaw.dtopotools.UCSBFault.read"]], "rise_fraction() (in module clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.rise_fraction"]], "rise_shape (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rise_shape"]], "rise_time (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rise_time"]], "rise_time_starting (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rise_time_starting"]], "rupture_time (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rupture_time"]], "rupture_type (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rupture_type"]], "set_corners() (clawpack.geoclaw.dtopotools.subfault method)": [[32, "clawpack.geoclaw.dtopotools.SubFault.set_corners"]], "set_dynamic_slip() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.set_dynamic_slip"]], "set_subfaults() (clawpack.geoclaw.dtopotools.siftfault method)": [[32, "clawpack.geoclaw.dtopotools.SiftFault.set_subfaults"]], "slip (clawpack.geoclaw.dtopotools.subfault attribute)": 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"fgmaxgrid (class in clawpack.geoclaw.fgmax_tools)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid"]], "adjust_fgmax_1d() (in module clawpack.geoclaw.fgmax_tools)": [[35, "clawpack.geoclaw.fgmax_tools.adjust_fgmax_1d"]], "bounding_box() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.bounding_box"]], "clawpack.geoclaw.fgmax_tools": [[35, "module-clawpack.geoclaw.fgmax_tools"]], "interp_dz() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.interp_dz"]], "ps4_to_arrays() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.ps4_to_arrays"]], "read_fgmax_grids_data() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.read_fgmax_grids_data"]], "read_output() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.read_output"]], "write_to_fgmax_data() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.write_to_fgmax_data"]], "b (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.B"]], "fgoutframe (class in clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame"]], "fgoutgrid (class in clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid"]], "x (clawpack.geoclaw.fgout_tools.fgoutgrid property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.X"], [37, "clawpack.geoclaw.fgout_tools.FGoutGrid.x"]], "y (clawpack.geoclaw.fgout_tools.fgoutgrid property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.Y"], [37, "clawpack.geoclaw.fgout_tools.FGoutGrid.y"]], "clawpack.geoclaw.fgout_tools": [[37, "module-clawpack.geoclaw.fgout_tools"]], "eta (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.eta"]], "extent_centers (clawpack.geoclaw.fgout_tools.fgoutgrid property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.extent_centers"]], "extent_edges (clawpack.geoclaw.fgout_tools.fgoutgrid property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.extent_edges"]], "get_as_array() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.get_as_array"]], "h (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.h"]], "hss (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.hss"]], "hu (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.hu"]], "hv (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.hv"]], "make_fgout_fcn_xy() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.make_fgout_fcn_xy"]], "make_fgout_fcn_xyt() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.make_fgout_fcn_xyt"]], "print_netcdf_info() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.print_netcdf_info"]], "read_fgout_grids_data() (clawpack.geoclaw.fgout_tools.fgoutgrid method)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.read_fgout_grids_data"]], "read_frame() (clawpack.geoclaw.fgout_tools.fgoutgrid method)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.read_frame"]], "read_netcdf() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.read_netcdf"]], "read_netcdf_arrays() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.read_netcdf_arrays"]], "s (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.s"]], "set_plotdata() (clawpack.geoclaw.fgout_tools.fgoutgrid method)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.set_plotdata"]], "u (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.u"]], "v (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.v"]], "write_netcdf() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.write_netcdf"]], "write_to_fgout_data() (clawpack.geoclaw.fgout_tools.fgoutgrid method)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.write_to_fgout_data"]], "bearing() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.bearing"]], "clawpack.geoclaw.util": [[51, "module-clawpack.geoclaw.util"]], "dist_latlong2meters() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.dist_latlong2meters"]], "dist_meters2latlong() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.dist_meters2latlong"]], "dms2decimal() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.dms2decimal"]], "fetch_noaa_tide_data() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.fetch_noaa_tide_data"]], "gctransect() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.gctransect"]], "haversine() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.haversine"]], "inv_haversine() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.inv_haversine"]], "box2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.box2kml"]], "clawpack.geoclaw.kmltools": [[63, "module-clawpack.geoclaw.kmltools"]], "deg2dms() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.deg2dms"]], "dtopo2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.dtopo2kml"]], "f2s() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.f2s"]], "fgmax2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.fgmax2kml"]], "fgout2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.fgout2kml"]], "gauges2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.gauges2kml"]], "kml_build_colorbar() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.kml_build_colorbar"]], "kml_cb() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.kml_cb"]], "kml_png() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.kml_png"]], "kml_timespan() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.kml_timespan"]], "line2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.line2kml"]], "make_input_data_kmls() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.make_input_data_kmls"]], "pcolorcells_for_kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.pcolorcells_for_kml"]], "png2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.png2kml"]], "poly2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.poly2kml"]], "quad2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.quad2kml"]], "regions2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.regions2kml"]], "topo2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.topo2kml"]], "topo2kmz() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.topo2kmz"]], "transect2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.transect2kml"]], "controller (class in clawpack.pyclaw.controller)": [[91, "clawpack.pyclaw.controller.Controller"]], "f_file_name (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.F_file_name"]], "f_path (clawpack.pyclaw.controller.controller property)": [[91, "clawpack.pyclaw.controller.Controller.F_path"]], "check_validity() (clawpack.pyclaw.controller.controller method)": [[91, "clawpack.pyclaw.controller.Controller.check_validity"]], "compute_f (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.compute_F"]], "compute_p (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.compute_p"]], "file_prefix_p (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.file_prefix_p"]], "frames (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.frames"]], "keep_copy (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.keep_copy"]], "nstepout (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.nstepout"]], "num_output_times (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.num_output_times"]], "out_times (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.out_times"]], "outdir (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.outdir"]], "outdir_p (clawpack.pyclaw.controller.controller property)": [[91, "clawpack.pyclaw.controller.Controller.outdir_p"]], "output_file_prefix (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.output_file_prefix"]], "output_format (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.output_format"]], "output_options (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.output_options"]], "output_style (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.output_style"]], "overwrite (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.overwrite"]], "plot() (clawpack.pyclaw.controller.controller method)": [[91, "clawpack.pyclaw.controller.Controller.plot"]], "plotdata (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.plotdata"]], "run() (clawpack.pyclaw.controller.controller method)": [[91, "clawpack.pyclaw.controller.Controller.run"]], "rundir (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.rundir"]], "runmake (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.runmake"]], "savecode (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.savecode"]], "solver (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.solver"]], "tfinal (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.tfinal"]], "verbosity (clawpack.pyclaw.controller.controller property)": [[91, "clawpack.pyclaw.controller.Controller.verbosity"]], "viewable_attributes (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.viewable_attributes"]], "write_aux_always (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.write_aux_always"]], "write_aux_init (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.write_aux_init"]], "xclawcmd (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.xclawcmd"]], "xclawerr (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.xclawerr"]], "xclawout (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.xclawout"]], "xdir (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.xdir"]], "arora_roe() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.arora_roe"]], "beta_limiter() (in module clawpack.pyclaw.limiters.tvd)": [[92, 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[[106, "clawpack.pyclaw.state.State.set_aux_from_auxbc"]], "set_cparam() (clawpack.pyclaw.state.state method)": [[106, "clawpack.pyclaw.state.State.set_cparam"]], "set_num_ghost() (clawpack.petclaw.state.state method)": [[106, "clawpack.petclaw.state.State.set_num_ghost"]], "set_num_ghost() (clawpack.pyclaw.state.state method)": [[106, "clawpack.pyclaw.state.State.set_num_ghost"]], "set_q_from_qbc() (clawpack.pyclaw.state.state method)": [[106, "clawpack.pyclaw.state.State.set_q_from_qbc"]], "t (clawpack.petclaw.state.state attribute)": [[106, "clawpack.petclaw.state.State.t"]], "t (clawpack.pyclaw.state.state attribute)": [[106, "clawpack.pyclaw.state.State.t"]], "framecounter (class in clawpack.pyclaw.util)": [[109, "clawpack.pyclaw.util.FrameCounter"]], "verifyerror": [[109, "clawpack.pyclaw.util.VerifyError"]], "add_parent_doc() (in module clawpack.pyclaw.util)": [[109, "clawpack.pyclaw.util.add_parent_doc"]], "check_diff() (in module clawpack.pyclaw.util)": [[109, "clawpack.pyclaw.util.check_diff"]], "clawpack.pyclaw.util": [[109, "module-clawpack.pyclaw.util"]], "compile_library() (in module clawpack.pyclaw.util)": [[109, "clawpack.pyclaw.util.compile_library"]], "construct_function_handle() (in module clawpack.pyclaw.util)": [[109, "clawpack.pyclaw.util.construct_function_handle"]], "convert_fort_double_to_float() (in module clawpack.pyclaw.util)": [[109, "clawpack.pyclaw.util.convert_fort_double_to_float"]], "gen_variants() (in module clawpack.pyclaw.util)": [[109, "clawpack.pyclaw.util.gen_variants"]], "get_counter() (clawpack.pyclaw.util.framecounter method)": [[109, "clawpack.pyclaw.util.FrameCounter.get_counter"]], "increment() (clawpack.pyclaw.util.framecounter method)": [[109, "clawpack.pyclaw.util.FrameCounter.increment"]], "read_data_line() (in module clawpack.pyclaw.util)": [[109, "clawpack.pyclaw.util.read_data_line"]], "reset_counter() (clawpack.pyclaw.util.framecounter method)": [[109, "clawpack.pyclaw.util.FrameCounter.reset_counter"]], "run_app_from_main() (in module clawpack.pyclaw.util)": [[109, "clawpack.pyclaw.util.run_app_from_main"]], "run_serialized() (in module clawpack.pyclaw.util)": [[109, "clawpack.pyclaw.util.run_serialized"]], "set_counter() (clawpack.pyclaw.util.framecounter method)": [[109, "clawpack.pyclaw.util.FrameCounter.set_counter"]], "test_app() (in module clawpack.pyclaw.util)": [[109, "clawpack.pyclaw.util.test_app"]], "nodataerror": [[158, "clawpack.geoclaw.surge.storm.NoDataError"]], "storm (class in clawpack.geoclaw.surge.storm)": [[158, "clawpack.geoclaw.surge.storm.Storm"]], "available_formats() (in module clawpack.geoclaw.surge.storm)": [[158, "clawpack.geoclaw.surge.storm.available_formats"]], "available_models() (in module clawpack.geoclaw.surge.storm)": [[158, "clawpack.geoclaw.surge.storm.available_models"]], "category() (clawpack.geoclaw.surge.storm.storm method)": [[158, "clawpack.geoclaw.surge.storm.Storm.category"]], "clawpack.geoclaw.surge.storm": [[158, "module-clawpack.geoclaw.surge.storm"]], "fill_rad_w_other_source() (in module clawpack.geoclaw.surge.storm)": [[158, "clawpack.geoclaw.surge.storm.fill_rad_w_other_source"]], "make_multi_structure() (in module clawpack.geoclaw.surge.storm)": [[158, "clawpack.geoclaw.surge.storm.make_multi_structure"]], "read() (clawpack.geoclaw.surge.storm.storm method)": [[158, "clawpack.geoclaw.surge.storm.Storm.read"]], "read_atcf() (clawpack.geoclaw.surge.storm.storm method)": [[158, "clawpack.geoclaw.surge.storm.Storm.read_atcf"]], "read_geoclaw() (clawpack.geoclaw.surge.storm.storm method)": [[158, "clawpack.geoclaw.surge.storm.Storm.read_geoclaw"]], "read_hurdat() (clawpack.geoclaw.surge.storm.storm method)": [[158, "clawpack.geoclaw.surge.storm.Storm.read_hurdat"]], "read_ibtracs() (clawpack.geoclaw.surge.storm.storm method)": [[158, "clawpack.geoclaw.surge.storm.Storm.read_ibtracs"]], "read_imd() (clawpack.geoclaw.surge.storm.storm method)": [[158, "clawpack.geoclaw.surge.storm.Storm.read_imd"]], "read_jma() (clawpack.geoclaw.surge.storm.storm method)": [[158, "clawpack.geoclaw.surge.storm.Storm.read_jma"]], "read_tcvitals() (clawpack.geoclaw.surge.storm.storm method)": [[158, "clawpack.geoclaw.surge.storm.Storm.read_tcvitals"]], "write() (clawpack.geoclaw.surge.storm.storm method)": [[158, "clawpack.geoclaw.surge.storm.Storm.write"]], "write_atcf() (clawpack.geoclaw.surge.storm.storm method)": [[158, "clawpack.geoclaw.surge.storm.Storm.write_atcf"]], "write_geoclaw() (clawpack.geoclaw.surge.storm.storm method)": [[158, "clawpack.geoclaw.surge.storm.Storm.write_geoclaw"]], "write_hurdat() (clawpack.geoclaw.surge.storm.storm method)": [[158, "clawpack.geoclaw.surge.storm.Storm.write_hurdat"]], "write_imd() (clawpack.geoclaw.surge.storm.storm method)": [[158, "clawpack.geoclaw.surge.storm.Storm.write_imd"]], "write_jma() (clawpack.geoclaw.surge.storm.storm method)": [[158, "clawpack.geoclaw.surge.storm.Storm.write_jma"]], "write_tcvitals() (clawpack.geoclaw.surge.storm.storm method)": [[158, "clawpack.geoclaw.surge.storm.Storm.write_tcvitals"]], "topography (class in clawpack.geoclaw.topotools)": [[164, "clawpack.geoclaw.topotools.Topography"]], "x (clawpack.geoclaw.topotools.topography property)": [[164, "clawpack.geoclaw.topotools.Topography.X"], [164, "clawpack.geoclaw.topotools.Topography.x"]], "y (clawpack.geoclaw.topotools.topography property)": [[164, "clawpack.geoclaw.topotools.Topography.Y"], [164, "clawpack.geoclaw.topotools.Topography.y"]], "z (clawpack.geoclaw.topotools.topography property)": [[164, "clawpack.geoclaw.topotools.Topography.Z"], [164, "clawpack.geoclaw.topotools.Topography.z"]], "clawpack.geoclaw.topotools": [[164, "module-clawpack.geoclaw.topotools"]], "create_topo_func() (in module clawpack.geoclaw.topotools)": [[164, "clawpack.geoclaw.topotools.create_topo_func"]], "crop() (clawpack.geoclaw.topotools.topography method)": [[164, "clawpack.geoclaw.topotools.Topography.crop"]], "delta (clawpack.geoclaw.topotools.topography property)": [[164, "clawpack.geoclaw.topotools.Topography.delta"]], "determine_topo_type() (in module clawpack.geoclaw.topotools)": [[164, "clawpack.geoclaw.topotools.determine_topo_type"]], "extent (clawpack.geoclaw.topotools.topography property)": [[164, "clawpack.geoclaw.topotools.Topography.extent"]], "fetch_topo_url() (in module clawpack.geoclaw.topotools)": [[164, "clawpack.geoclaw.topotools.fetch_topo_url"]], "generate_2d_coordinates() (clawpack.geoclaw.topotools.topography method)": [[164, "clawpack.geoclaw.topotools.Topography.generate_2d_coordinates"]], "generate_2d_topo() (clawpack.geoclaw.topotools.topography method)": [[164, "clawpack.geoclaw.topotools.Topography.generate_2d_topo"]], "get_topo() (in module clawpack.geoclaw.topotools)": [[164, "clawpack.geoclaw.topotools.get_topo"]], "in_poly() (clawpack.geoclaw.topotools.topography method)": [[164, "clawpack.geoclaw.topotools.Topography.in_poly"]], "interp_unstructured() (clawpack.geoclaw.topotools.topography method)": [[164, "clawpack.geoclaw.topotools.Topography.interp_unstructured"]], "make_shoreline_xy() (clawpack.geoclaw.topotools.topography method)": [[164, "clawpack.geoclaw.topotools.Topography.make_shoreline_xy"]], "plot() (clawpack.geoclaw.topotools.topography method)": [[164, "clawpack.geoclaw.topotools.Topography.plot"]], "read() (clawpack.geoclaw.topotools.topography method)": [[164, "clawpack.geoclaw.topotools.Topography.read"]], "read_header() (clawpack.geoclaw.topotools.topography method)": [[164, "clawpack.geoclaw.topotools.Topography.read_header"]], "read_netcdf() (in module clawpack.geoclaw.topotools)": [[164, "clawpack.geoclaw.topotools.read_netcdf"]], "replace_no_data_values() (clawpack.geoclaw.topotools.topography method)": [[164, "clawpack.geoclaw.topotools.Topography.replace_no_data_values"]], "replace_values() (clawpack.geoclaw.topotools.topography method)": [[164, "clawpack.geoclaw.topotools.Topography.replace_values"]], "set_xyz() (clawpack.geoclaw.topotools.topography method)": [[164, "clawpack.geoclaw.topotools.Topography.set_xyZ"]], "smooth_data() (clawpack.geoclaw.topotools.topography method)": [[164, "clawpack.geoclaw.topotools.Topography.smooth_data"]], "swapheader() (in module clawpack.geoclaw.topotools)": [[164, "clawpack.geoclaw.topotools.swapheader"]], "topo1writer() (in module clawpack.geoclaw.topotools)": [[164, "clawpack.geoclaw.topotools.topo1writer"]], "topo2writer() (in module clawpack.geoclaw.topotools)": [[164, "clawpack.geoclaw.topotools.topo2writer"]], "topo3writer() (in module clawpack.geoclaw.topotools)": [[164, "clawpack.geoclaw.topotools.topo3writer"]], "write() (clawpack.geoclaw.topotools.topography method)": [[164, "clawpack.geoclaw.topotools.Topography.write"]]}})
\ No newline at end of file
diff --git a/dev/set_eta_init.html b/dev/set_eta_init.html
index f7129f30d..ceff6138d 100644
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-    Set Eta Init – spatially varying initial surface elevation — Clawpack 5.10.x documentation
+    Set Eta Init – spatially varying initial surface elevation — Clawpack dev documentation
     
     
     
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diff --git a/dev/setaux_defaults.html b/dev/setaux_defaults.html
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index 54f91ec98..db4273e19 100644
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index 790bfbe4d..dd10c8013 100644
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@@ -6,7 +6,7 @@
     
     
 
-    Using setplot.py to specify the desired plots — Clawpack 5.10.x documentation
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index e2cb0e375..6852ddb64 100644
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+    Specifying classic run-time parameters in setrun.py — Clawpack dev documentation
     
     
     
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index ee1600d7c..d7fa00a0b 100644
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-    Specifying AMRClaw run-time parameters in setrun.py — Clawpack 5.10.x documentation
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index c7a462625..a59e79d93 100644
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@@ -6,7 +6,7 @@
     
     
 
-    Sample setrun.py module for AMRClaw — Clawpack 5.10.x documentation
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index aa550f7c9..b29d5c7ca 100644
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-    Source terms for shallow water on the sphere — Clawpack 5.10.x documentation
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-    Storm Specification Class and Tools — Clawpack 5.10.x documentation
+    Storm Specification Class and Tools — Clawpack dev documentation
     
     
     
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-    Sources for Storm Surge Data — Clawpack 5.10.x documentation
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    Version dev
    
 
    Related Topics
    
 
      
@@ -215,7 +215,7 @@ 
    Troubleshooting Fortran:
     
 
-
    Version 5.10.x
    
+
    Version dev
    
 
    
   
    
     
    Table of Contents
    
diff --git a/dev/tsunamidata.html b/dev/tsunamidata.html
index 435ac0ce5..7eed87443 100644
--- a/dev/tsunamidata.html
+++ b/dev/tsunamidata.html
@@ -6,7 +6,7 @@
     
     
 
-    Some sources of tsunami data — Clawpack 5.10.x documentation
+    Some sources of tsunami data — Clawpack dev documentation
     
     
     
@@ -75,7 +75,7 @@ 
    Navigation
    
         
  • 
           previous |
    • 
-        
  • Clawpack 5.10.x documentation »
    • 
+        
  • Clawpack dev documentation »
    • 
           
  • GeoClaw Description and Detailed Contents »
    • 
         
  • Some sources of tsunami data
    •  
       
@@ -171,7 +171,7 @@ 
    Tide gauges
     
 
-
    Version 5.10.x
    
+
    Version dev
    
 
    
   
    
     
    Table of Contents
    
diff --git a/dev/user_routines.html b/dev/user_routines.html
index 68e03e48d..ef6176c90 100644
--- a/dev/user_routines.html
+++ b/dev/user_routines.html
@@ -6,7 +6,7 @@
     
     
 
-    User files required for the Fortran code — Clawpack 5.10.x documentation
+    User files required for the Fortran code — Clawpack dev documentation
     
     
     
@@ -75,7 +75,7 @@ 
    Navigation
    
         
  • 
           previous |
    • 
-        
  • Clawpack 5.10.x documentation »
    • 
+        
  • Clawpack dev documentation »
    • 
         
  • User files required for the Fortran code
    •  
       
     
      
@@ -306,7 +306,7 @@ 
    Navigation
    
 
    
     
 
-
    Version 5.10.x
    
+
    Version dev
    
 
    
   
    
     
    Table of Contents
    
diff --git a/dev/visit_plotting.html b/dev/visit_plotting.html
index 6b5cf983a..d1a6a9c59 100644
--- a/dev/visit_plotting.html
+++ b/dev/visit_plotting.html
@@ -6,7 +6,7 @@
     
     
 
-    Plotting with VisIt — Clawpack 5.10.x documentation
+    Plotting with VisIt — Clawpack dev documentation
     
     
     
@@ -74,7 +74,7 @@ 
    Navigation
    
         
  • 
           previous |
    • 
-        
  • Clawpack 5.10.x documentation »
    • 
+        
  • Clawpack dev documentation »
    • 
           
  • Plotting with Visclaw »
    • 
         
  • Plotting with VisIt
    •  
       
@@ -124,7 +124,7 @@ 
    Navigation
    
 
    
     
 
-
    Version 5.10.x
    
+
    Version dev
    
 
    Related Topics
    
 
      
@@ -104,7 +104,7 @@ 
    Navigation
    
 
    
     
 
-
    Version 5.10.x
    
+
    Version dev
    
 
    Related Topics
    
 
      
@@ -214,7 +214,7 @@ 
    Boundary conditions
     
 
-
    Version 5.10.x
    
+
    Version dev
    
 
    
   
    
     
    Table of Contents
    
diff --git a/howto_release.html b/howto_release.html
index 7ad3f7e8e..5a353e051 100644
--- a/howto_release.html
+++ b/howto_release.html
@@ -185,7 +185,7 @@ 
    Final releaseChanges to master since v5.9.2 which generate diffs between the latest version and
+Changes to master since v5.10.0 which generate diffs between the latest version and
 the current master branch of each repository.
    diff --git a/installing_fortcodes.html b/installing_fortcodes.html index 524a34b9b..885f8df8b 100644 --- a/installing_fortcodes.html +++ b/installing_fortcodes.html @@ -106,9 +106,9 @@

    Navigation

    Citing this work)

    After downloading a tar file you can do, e.g.

    -
    tar -xzf clawpack-v5.9.2.tar.gz
-cd clawpack-v5.9.2
-export CLAW=/full/path/to/clawpack-v5.9.2  # in bash
+
    tar -xzf clawpack-v5.10.0.tar.gz
+cd clawpack-v5.10.0
+export CLAW=/full/path/to/clawpack-v5.10.0  # in bash
 
    
 
    
 
    The last command sets an environment variable when using the bash shell.
@@ -126,7 +126,7 @@ 
    Navigation
    
 See Developers’ Guide for more details, but the basic commands are:
    
 
    git clone https://github.com/clawpack/clawpack.git
 cd clawpack
-git checkout v5.9.2     # or an older version; `git tag -l` to list options
+git checkout v5.10.0     # or an older version; `git tag -l` to list options
 git submodule init      # for repositories pyclaw, clawutil, visclaw, etc.
 git submodule update    # clones all the submodule repositories
 export CLAW=/full/path/to/clawpack    # in bash
diff --git a/installing_pip.html b/installing_pip.html
index 0076d19a2..28d53cdd5 100644
--- a/installing_pip.html
+++ b/installing_pip.html
@@ -104,7 +104,7 @@ 
    Navigation
    
 
    
 
    
 
    or, more specifically,
    
-
    pip install --user clawpack==v5.9.2
+
    pip install --user clawpack==v5.10.0
 
    
 
    
 
    or you can choose a previous version from the PyPi history.
    
@@ -122,7 +122,7 @@ 
    Navigation
    
 (you might want to first read the notes below to see if you
 want to change anything in this command):
    
 
    pip install --src=$HOME/clawpack_src --user --no-build-isolation -e \
-    git+https://github.com/clawpack/clawpack.git@v5.9.2#egg=clawpack
+    git+https://github.com/clawpack/clawpack.git@v5.10.0#egg=clawpack
 
    
 
    
 
    Notes:
    
@@ -135,7 +135,7 @@ 
    Navigation
    
 convert Fortran Riemann solvers to Python versions.  See
 installing_options if you want more control.
    
 
  • This will download Clawpack (via a git clone) into the directory
-$HOME/clawpack_src/clawpack-v5.9.2.  The top
+$HOME/clawpack_src/clawpack-v5.10.0.  The top
 installation directory can be changed by modifying the --src target
 (or omit this part to put it in your current working directory).
 If you have already downloaded Clawpack via a different mechanism then
@@ -152,10 +152,10 @@ 
    Navigation
    
 site-packages directory and delete everything else.)
    • 
 
  • In order to use the Fortran codes within Clawpack (classic,
 amrclaw, or geoclaw), you should then set the environment
-variable CLAW to point to the clawpack-v5.9.2 directory within
+variable CLAW to point to the clawpack-v5.10.0 directory within
 the installation directory $HOME/clawpack_src, and FC to point
 to the desired Fortran compiler, e.g. in the bash shell:
    
-
    export CLAW=$HOME/clawpack_src/clawpack-v5.9.2
+
    export CLAW=$HOME/clawpack_src/clawpack-v5.10.0
 export FC=gfortran
 
    
 
    
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diff --git a/release_5_10_0.html b/release_5_10_0.html
index 7393348a9..8282a3fc0 100644
--- a/release_5_10_0.html
+++ b/release_5_10_0.html
@@ -82,7 +82,7 @@ 
    Navigation
    
 
    Permanent DOI: http://doi.org/10.5281/zenodo.XX
    
 
    Changes relative to Clawpack 5.9.2 (November 4, 2023) are shown below.
    
 
    To see more recent changes that are in the the master branch but not yet
-released, see Changes to master since v5.9.2.
    
+released, see Changes to master since v5.10.0.
    
 
    Follow the links to see changes that have been made to the master branch of
 each repository since the last release (v5.10.0) on XX.
    
 
    These changes should appear in the next release.  If you need them now,
diff --git a/release_5_6_0.html b/release_5_6_0.html
index bffd72cf5..9ffeadf44 100644
--- a/release_5_6_0.html
+++ b/release_5_6_0.html
@@ -81,7 +81,7 @@ 
    Navigation
    
 
    Clawpack 5.6.0 was released on June 2, 2019.  See Installing Clawpack.
    
 
    Changes relative to Clawpack 5.5.0 (Aug 28, 2018) are shown below.
    
 
    To see more recent changes that are in the the master branch but not yet
-released, see Changes to master since v5.9.2.
    
+released, see Changes to master since v5.10.0.
    
 
    
 
    Changes that are not backward compatible
    
 
    
diff --git a/release_5_6_1.html b/release_5_6_1.html
index 363a06dd8..d4dd617ff 100644
--- a/release_5_6_1.html
+++ b/release_5_6_1.html
@@ -81,7 +81,7 @@ 
    Navigation
    
 
    Clawpack 5.6.1 was released on October 28, 2019. See Installing Clawpack.
    
 
    Changes relative to Clawpack 5.6.0 (June 2, 2019) are shown below.
    
 
    To see more recent changes that are in the the master branch but not yet
-released, see Changes to master since v5.9.2.
    
+released, see Changes to master since v5.10.0.
    
 
    
 
    Changes that are not backward compatible
    
 
    $CLAW/amrclaw/src/2d/amr_module.f90 has changed, so do a make new in
diff --git a/release_5_7_0.html b/release_5_7_0.html
index 591ea9dc3..0098f61fa 100644
--- a/release_5_7_0.html
+++ b/release_5_7_0.html
@@ -83,7 +83,7 @@ 
    Navigation
    
 [DOI 10.5281/zenodo.3764278].
    
 
    Changes relative to Clawpack 5.6.1 (October 28, 2019) are shown below.
    
 
    To see more recent changes that are in the the master branch but not yet
-released, see Changes to master since v5.9.2.
    
+released, see Changes to master since v5.10.0.
    
 
    
 
    Python support
    
 
    As of v5.7.0 we are no longer supporting Python 2.7, and Python 3.x is
diff --git a/release_5_7_1.html b/release_5_7_1.html
index 1031c3e7d..9530e23a1 100644
--- a/release_5_7_1.html
+++ b/release_5_7_1.html
@@ -83,7 +83,7 @@ 
    Navigation
    
 [DOI 10.5281/zenodo.4025432].
    
 
    Changes relative to Clawpack 5.7.0 (April 23, 2020) are shown below.
    
 
    To see more recent changes that are in the the master branch but not yet
-released, see Changes to master since v5.9.2.
    
+released, see Changes to master since v5.10.0.
    
 
    
 
    Changes that are not backward compatible
    
 
      
diff --git a/release_5_8_0.html b/release_5_8_0.html
index 6939ae3ef..ec85148eb 100644
--- a/release_5_8_0.html
+++ b/release_5_8_0.html
@@ -82,7 +82,7 @@ 
      Navigation
      
 
      Permanent DOI: http://doi.org/10.5281/zenodo.4503024
      
 
      Changes relative to Clawpack 5.7.1 (Sept. 11, 2020) are shown below.
      
 
      To see more recent changes that are in the the master branch but not yet
-released, see Changes to master since v5.9.2.
      
+released, see Changes to master since v5.10.0.
      
 
      
 
      Changes that are not backward compatible
      
 
        
diff --git a/release_5_8_1.html b/release_5_8_1.html
index 1782f7e24..a39b351c5 100644
--- a/release_5_8_1.html
+++ b/release_5_8_1.html
@@ -84,7 +84,7 @@ 
        Navigation
        
 
        Permanent DOI: http://doi.org/10.5281/zenodo.5595424
        
 
        Changes relative to Clawpack 5.8.0 (February 4, 2021) are shown below.
        
 
        To see more recent changes that are in the the master branch but not yet
-released, see Changes to master since v5.9.2.
        
+released, see Changes to master since v5.10.0.
        
 
        
 
        Changes that are not backward compatible
        
 
        
diff --git a/release_5_8_2.html b/release_5_8_2.html
index 911c0669a..26d030c12 100644
--- a/release_5_8_2.html
+++ b/release_5_8_2.html
@@ -82,7 +82,7 @@ 
        Navigation
        
 
        Permanent DOI: http://doi.org/10.5281/zenodo.5781749
        
 
        Changes relative to Clawpack 5.8.1 (October 19, 2021) are shown below.
        
 
        To see more recent changes that are in the the master branch but not yet
-released, see Changes to master since v5.9.2.
        
+released, see Changes to master since v5.10.0.
        
 
        
 
        Changes that are not backward compatible
        
 
        None.
        
diff --git a/release_5_9_0.html b/release_5_9_0.html
index 8f0ad4876..c07553c73 100644
--- a/release_5_9_0.html
+++ b/release_5_9_0.html
@@ -82,7 +82,7 @@ 
        Navigation
        
 
        Permanent DOI: http://doi.org/10.5281/zenodo.7026045
        
 
        Changes relative to Clawpack 5.8.2 (December 14, 2021) are shown below.
        
 
        To see more recent changes that are in the the master branch but not yet
-released, see Changes to master since v5.9.2.
        
+released, see Changes to master since v5.10.0.
        
 
        Follow the links to see changes that have been made to the master branch of
 each repository since the last release (v5.9.0) on August 26, 2022.
        
 
        These changes should appear in the next release.  If you need them now,
diff --git a/release_5_9_1.html b/release_5_9_1.html
index 1a4625a1e..1110dee89 100644
--- a/release_5_9_1.html
+++ b/release_5_9_1.html
@@ -82,7 +82,7 @@ 
        Navigation
        
 
        Permanent DOI: http://doi.org/10.5281/zenodo.8400237
        
 
        Changes relative to Clawpack 5.9.0 (August 26, 2022) are shown below.
        
 
        To see more recent changes that are in the the master branch but not yet
-released, see Changes to master since v5.9.2.
        
+released, see Changes to master since v5.10.0.
        
 
        Follow the links to see changes that have been made to the master branch of
 each repository since the last release (v5.9.1) on October 2, 2023.
        
 
        These changes should appear in the next release.  If you need them now,
diff --git a/release_5_9_2.html b/release_5_9_2.html
index 9594ed283..aac5f0109 100644
--- a/release_5_9_2.html
+++ b/release_5_9_2.html
@@ -82,7 +82,7 @@ 
        Navigation
        
 
        Permanent DOI: http://doi.org/10.5281/zenodo.XXX
        
 
        Changes relative to Clawpack 5.9.2 (October 2, 2023) are shown below.
        
 
        To see more recent changes that are in the the master branch but not yet
-released, see Changes to master since v5.9.2.
        
+released, see Changes to master since v5.10.0.
        
 
        Follow the links to see changes that have been made to the master branch of
 each repository since the last release (v5.9.2) on November 4, 2023.
        
 
        These changes should appear in the next release.  If you need them now,
diff --git a/releases.html b/releases.html
index 8d8f4f6db..93cc047e8 100644
--- a/releases.html
+++ b/releases.html
@@ -97,7 +97,7 @@ 
        Other notes:PyClaw changelog.
 Starting with v5.9.0, changes will be recorded in the release notes along
 with those for other repositories.
        
-
      • See Changes to master since v5.9.2 for changes to the master branch on Github
+
      • See Changes to master since v5.10.0 for changes to the master branch on Github
 that are not in the most recent release.
        • 
 
      • The “dev” branch of the
 documentation (selected under Versions on the menu
@@ -114,8 +114,8 @@ 
        Releases:10.17605/osf.io/kmw6h.
 See Citing this work for more information on how best to cite Clawpack.
        
 
          
-
        • v5.10.0 release notes  – TBA
-[DOI 10.5281/zenodo.XX]
          • 
+
        • v5.10.0 release notes  – March 29, 2024
+[DOI 10.5281/zenodo.10896214]
          • 
 
        • v5.9.2 release notes  – November 4, 2023
 [DOI 10.5281/zenodo.10076317]
          • 
 
        • v5.9.1 release notes  – October 2, 2023
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166, 167, 169, 170], "overrul": 3, "r": [3, 4, 6, 17, 30, 47, 51, 56, 58, 70, 71, 74, 82, 88, 92, 99, 101, 118, 140, 142, 147, 164, 170], "ff0000": [3, 63], "No": [3, 43, 55, 59, 71, 94, 104, 133, 140, 148, 151, 165], "extra": [3, 55, 141], "give": [3, 6, 9, 10, 13, 16, 17, 18, 19, 26, 30, 32, 34, 35, 36, 38, 39, 47, 49, 56, 63, 64, 70, 72, 75, 76, 77, 82, 84, 99, 100, 104, 116, 120, 124, 125, 129, 132, 142, 148, 151, 162, 164, 166], "polygon": [3, 7, 41, 55, 63, 130, 164], "curv": [3, 47, 81, 142], "fill_between": 3, "plot_var2": 3, "zero": [3, 16, 32, 34, 42, 44, 47, 63, 71, 72, 88, 101, 102, 106, 108, 132, 142, 143], "fill_wher": 3, "plotitem": [3, 29, 47, 82, 147], "mean": [3, 13, 24, 30, 34, 42, 47, 52, 56, 62, 71, 72, 98, 99, 115, 118, 140, 143, 148, 150, 152, 166], "map_2d_to_1d": 3, "In": [3, 5, 6, 8, 11, 12, 15, 16, 18, 19, 21, 22, 24, 29, 32, 34, 36, 41, 44, 47, 48, 49, 52, 55, 56, 57, 58, 59, 62, 63, 64, 66, 67, 70, 71, 72, 74, 75, 77, 78, 82, 83, 84, 88, 89, 94, 96, 97, 98, 99, 100, 101, 102, 104, 106, 109, 111, 112, 113, 115, 118, 119, 120, 123, 124, 125, 127, 128, 132, 136, 139, 140, 142, 144, 145, 146, 148, 149, 151, 156, 157, 162, 164, 165, 167, 170], "about": [3, 5, 7, 13, 14, 16, 18, 19, 24, 27, 35, 36, 37, 38, 39, 43, 49, 51, 52, 57, 59, 63, 66, 68, 71, 77, 83, 85, 88, 96, 97, 99, 104, 111, 116, 124, 128, 130, 135, 136, 140, 147, 149, 150, 151, 162, 165, 167, 170], "j": [3, 4, 5, 15, 17, 22, 24, 29, 35, 42, 56, 63, 70, 71, 77, 84, 96, 97, 115, 119, 120, 144, 145], "v": [3, 16, 27, 31, 32, 34, 36, 37, 51, 64, 67, 116, 124, 149, 162], "radiu": [3, 151, 158, 159, 164], "q0_vs_radiu": 3, "convert": [3, 24, 27, 32, 35, 37, 45, 51, 55, 62, 63, 66, 75, 78, 89, 96, 101, 109, 110, 127, 130, 136, 137, 148, 149, 158, 162, 166], "numpi": [3, 13, 32, 34, 36, 37, 42, 51, 70, 85, 87, 88, 89, 91, 94, 101, 106, 107, 108, 110, 116, 137, 141, 142, 150, 164, 165], "sqrt": [3, 34, 37, 49, 68, 88, 101, 102, 108, 150], "q0": [3, 101], "work": [3, 5, 8, 13, 16, 19, 21, 22, 24, 26, 27, 28, 30, 31, 34, 36, 38, 39, 43, 48, 52, 55, 56, 57, 58, 59, 60, 61, 62, 63, 70, 71, 74, 75, 76, 82, 85, 86, 87, 88, 90, 91, 92, 96, 97, 98, 99, 102, 104, 105, 110, 111, 113, 114, 115, 116, 118, 121, 122, 123, 124, 125, 126, 127, 130, 132, 133, 138, 140, 146, 147, 148, 149, 153, 159, 162, 165, 169], "symbol": [3, 71, 111], "best": [3, 4, 16, 24, 28, 30, 36, 44, 49, 55, 57, 59, 60, 66, 72, 74, 76, 81, 82, 97, 101, 113, 114, 115, 116, 127, 138, 140, 151, 155, 158, 162, 167], "descript": [3, 4, 6, 9, 24, 25, 27, 32, 36, 37, 63, 71, 75, 78, 81, 96, 97, 109, 113, 115, 137, 140, 141, 151, 158, 162, 170], "celledges_show": [3, 24], "draw": 3, "amr_celledges_show": 3, "level": [3, 6, 7, 16, 19, 25, 29, 31, 34, 36, 41, 42, 47, 48, 50, 51, 52, 55, 58, 59, 61, 62, 71, 72, 76, 77, 89, 91, 94, 96, 97, 98, 104, 111, 112, 115, 116, 119, 120, 124, 125, 127, 130, 139, 142, 143, 146, 148, 149, 150, 152, 161, 162, 164, 166, 167], "patchedges_show": [3, 24], "mostli": [3, 81, 96, 130, 137], "contour_level": [3, 164], "three": [3, 13, 17, 24, 32, 34, 37, 52, 55, 67, 71, 75, 99, 103, 109, 116, 142, 148, 151, 162, 164, 167], "contour_nlevel": 3, "contour_min": 3, "minimum": [3, 19, 34, 47, 55, 75, 108, 125, 151, 164], "contour_max": 3, "maximum": [3, 24, 32, 34, 35, 36, 48, 71, 72, 104, 108, 115, 119, 120, 127, 130, 148, 149, 150, 152, 158, 159], "contour_color": 3, "specif": [3, 5, 12, 19, 24, 30, 32, 47, 48, 49, 51, 55, 56, 62, 65, 67, 68, 77, 86, 87, 89, 91, 96, 97, 98, 102, 103, 109, 113, 125, 126, 127, 130, 147, 148, 149, 150, 152, 159, 162], "b": [3, 5, 17, 30, 32, 34, 35, 36, 37, 42, 47, 49, 56, 58, 59, 68, 72, 82, 104, 115, 123, 130, 142, 143, 144, 151, 164, 166], "0000ff": [3, 63], "colormap": [3, 32, 42, 50, 55, 70, 71, 81, 83, 124, 130, 164], "amr_contour_color": 3, "As": [3, 18, 19, 39, 42, 48, 49, 52, 58, 59, 63, 64, 88, 108, 110, 114, 118, 119, 130, 140, 141, 144, 151, 154, 160, 167], "black": [3, 47], "subsequ": [3, 10, 71], "both": [3, 16, 18, 19, 30, 32, 35, 36, 37, 38, 39, 41, 42, 47, 52, 57, 60, 62, 67, 70, 71, 75, 77, 89, 97, 98, 99, 104, 105, 115, 116, 123, 124, 127, 130, 135, 140, 141, 142, 144, 148, 149, 150, 152, 156, 162, 167], "fine": [3, 19, 34, 35, 36, 42, 49, 58, 74, 78, 96, 101, 115, 118, 125, 132, 142, 144, 148, 149, 151, 162, 167], "coars": [3, 34, 36, 55, 115, 118, 125, 132, 148, 162, 167], "anoth": [3, 19, 24, 34, 36, 42, 47, 51, 55, 62, 63, 77, 81, 85, 93, 104, 107, 116, 127, 158, 167], "refin": [3, 4, 5, 7, 8, 17, 19, 24, 36, 48, 49, 52, 55, 56, 57, 70, 71, 77, 78, 88, 125, 127, 128, 130, 132, 142, 144, 147, 148, 149, 150, 161, 162, 167], "region": [3, 6, 7, 13, 16, 19, 24, 34, 36, 41, 42, 48, 52, 53, 55, 63, 68, 72, 75, 78, 113, 118, 127, 130, 132, 143, 144, 149, 150, 154, 162, 164], "lack": 3, "hidden": [3, 66, 82], "blank": [3, 35, 63, 158], "coarser": [3, 16, 19, 57, 125, 144, 148, 149, 167], "easili": [3, 13, 30, 34, 55, 58, 71, 82, 89, 94, 105, 109, 116, 118, 130, 153], "contour_show": 3, "commonli": [3, 19, 71, 82, 84], "amr_contour_show": 3, "determin": [3, 5, 6, 32, 34, 37, 42, 47, 48, 49, 52, 54, 55, 58, 63, 72, 75, 82, 92, 94, 97, 102, 106, 111, 115, 120, 124, 125, 139, 142, 143, 147, 148, 149, 151, 164, 167], "whether": [3, 6, 13, 16, 24, 51, 57, 60, 62, 64, 65, 66, 71, 86, 94, 97, 98, 102, 103, 104, 115, 116, 125, 140, 142, 148, 149, 151, 164], "view": [3, 4, 24, 36, 38, 39, 47, 48, 49, 51, 55, 57, 58, 63, 77, 81, 83, 84, 88, 99, 105, 110, 123, 127, 153, 155], "finest": [3, 19, 34, 36, 42, 47, 72, 127, 161, 164], "contour_kwarg": [3, 164], "pcolor_cmap": [3, 55], "pcolor_cmin": 3, "pcolor_cmax": 3, "thei": [3, 5, 6, 13, 16, 18, 19, 26, 29, 30, 32, 34, 36, 41, 42, 45, 47, 49, 52, 55, 58, 59, 62, 63, 64, 67, 70, 71, 77, 81, 94, 96, 101, 104, 109, 115, 116, 125, 132, 144, 147, 151, 154, 158, 162, 164, 167], "chosen": [3, 31, 34, 41, 42, 49, 55, 57, 70, 108, 115, 132, 143, 149], "vari": [3, 15, 17, 27, 32, 42, 48, 49, 57, 68, 72, 101, 103, 123, 130, 140, 141, 143, 145, 149, 151, 170], "yield": [3, 18, 19], "veri": [3, 5, 16, 17, 18, 19, 24, 49, 52, 55, 59, 60, 63, 75, 82, 86, 89, 97, 98, 99, 100, 101, 104, 116, 118, 120, 124, 135, 142, 144, 148, 159, 162], "confus": [3, 57, 62, 111, 132, 140], "add_colorbar": [3, 32, 164], "ad": [3, 12, 16, 22, 24, 26, 27, 29, 31, 34, 36, 37, 44, 47, 51, 57, 58, 59, 62, 63, 64, 68, 71, 72, 75, 82, 87, 89, 92, 94, 95, 98, 99, 111, 112, 113, 115, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 133, 135, 136, 137, 139, 144, 148, 149, 151, 154, 158, 161, 164, 168], "imshow_cmap": 3, "imshow_cmin": 3, "imshow_cmax": 3, "hillshade_vertical_exagger": 3, "vertic": [3, 32, 41, 52, 55, 63, 70, 142, 143, 151, 164, 166], "exagger": 3, "calul": 3, "hillshade_azimuth_degre": 3, "light": [3, 55, 71, 115], "sourc": [3, 4, 17, 18, 19, 25, 27, 30, 32, 44, 48, 49, 55, 56, 58, 59, 61, 62, 63, 65, 67, 68, 81, 86, 89, 93, 94, 95, 104, 105, 107, 108, 109, 113, 114, 116, 118, 125, 126, 127, 136, 137, 141, 143, 148, 150, 151, 152, 155, 156, 157, 158, 162], "azimuth": 3, "angl": [3, 16, 32, 51, 75], "315": 3, "northwest": 3, "360": [3, 51, 55, 75], "degre": [3, 32, 49, 51, 55, 63, 72, 75], "clockwis": [3, 34, 51, 75, 164], "north": [3, 34, 42, 49, 51, 70, 75], "recommend": [3, 4, 18, 19, 32, 34, 36, 38, 39, 58, 59, 60, 62, 76, 81, 90, 94, 96, 97, 99, 100, 104, 105, 107, 108, 115, 127, 135, 137, 148, 150, 152, 168], "proper": [3, 6, 15, 42, 47, 56, 57, 58, 59, 63, 68, 70, 71, 97, 109, 119, 125, 145, 149, 150, 156, 157, 158, 167], "interpret": [3, 32, 57, 75, 97, 127, 162], "peopl": [3, 4, 12, 13, 86], "hillshade_altitude_degre": 3, "altitud": 3, "horizon": 3, "45": [3, 104], "90": [3, 27, 32, 49, 55, 67, 75, 105, 107, 136], "hillshade_latlon": 3, "correct": [3, 18, 19, 22, 30, 44, 58, 59, 67, 68, 71, 82, 88, 94, 97, 99, 103, 109, 119, 120, 124, 144, 148, 150, 151, 152], "unit": [3, 32, 49, 50, 51, 56, 75, 94, 125, 136, 158], "z": [3, 42, 57, 63, 70, 71, 88, 94, 102, 108, 142, 148, 149, 162, 164], "111200": 3, "reflect": [3, 4, 5, 16, 30, 115, 127, 148, 150, 152], "relat": [3, 7, 19, 24, 26, 58, 78, 102, 113, 126, 130, 132, 143], "pre": [3, 13, 35, 59, 90, 97], "pend": 3, "amr_": [3, 7], "whose": [3, 49, 82, 89, 101, 102, 144, 148, 149, 164], "origin": [3, 6, 13, 16, 18, 19, 22, 30, 32, 36, 37, 45, 47, 56, 58, 63, 70, 76, 77, 89, 104, 109, 119, 125, 132, 139, 149, 150, 151, 152, 164], "hand": [3, 5, 19, 20, 21, 22, 68, 88, 116, 118, 135, 136, 137, 142], "higher": [3, 6, 18, 19, 55, 94, 104, 105, 115, 130, 140, 142, 143, 144], "shorter": [3, 115, 164], "last": [3, 20, 29, 34, 36, 59, 61, 82, 88, 89, 101, 108, 118, 124, 135, 136, 137, 148, 158], "repeatedli": [3, 99, 105, 149], "finer": [3, 7, 19, 34, 55, 115, 119, 120, 142, 148, 149], "celledg": [3, 32, 49], "colorbar_shrink": [3, 32], "colorbar_label": 3, "colorbar_tick": 3, "colorbar_tick_label": 3, "colorbar_extend": [3, 136], "colorbar_kwarg": [3, 127], "stand": [4, 132], "conserv": [4, 5, 6, 17, 18, 19, 98, 104, 106, 128, 141, 167, 170], "law": [4, 17, 63, 151, 170], "packag": [4, 27, 30, 31, 38, 39, 55, 59, 60, 67, 77, 78, 81, 85, 86, 88, 94, 96, 98, 100, 101, 103, 105, 108, 110, 111, 118, 129, 130, 165, 168], "wa": [4, 5, 6, 14, 19, 21, 22, 27, 31, 32, 34, 35, 36, 37, 42, 49, 52, 54, 58, 59, 66, 68, 70, 71, 75, 82, 99, 103, 104, 106, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 139, 142, 144, 161, 162, 164], "initi": [4, 5, 7, 12, 13, 18, 19, 24, 27, 32, 36, 37, 47, 48, 49, 51, 52, 55, 59, 64, 67, 71, 72, 75, 77, 78, 84, 86, 87, 88, 89, 91, 92, 94, 95, 97, 98, 102, 103, 104, 106, 107, 109, 112, 115, 124, 127, 130, 132, 140, 143, 148, 149, 150, 152, 154, 158, 162, 164], "develop": [4, 6, 7, 12, 13, 19, 20, 24, 25, 45, 52, 56, 58, 61, 62, 65, 70, 71, 81, 85, 86, 89, 96, 101, 104, 105, 111, 113, 116, 118, 127, 128, 130, 132, 135, 136, 137, 140, 143, 144, 150], "linear": [4, 5, 17, 18, 19, 32, 36, 37, 47, 49, 55, 72, 75, 82, 88, 92, 104, 118, 128, 140, 141, 142], "nonlinear": [4, 5, 17, 52, 92, 140, 148, 170], "hyperbol": [4, 5, 6, 17, 18, 19, 45, 78, 89, 96, 101, 102, 108, 140, 148, 151, 167, 170], "system": [4, 16, 17, 18, 19, 25, 39, 40, 48, 55, 56, 62, 63, 67, 76, 77, 86, 96, 97, 98, 99, 101, 102, 105, 108, 111, 116, 118, 140, 148, 150, 152, 160, 167, 170], "focu": [4, 48], "high": [4, 17, 34, 52, 55, 70, 72, 75, 78, 89, 96, 104, 140, 143, 144, 166, 167], "resolut": [4, 6, 17, 32, 34, 36, 42, 47, 64, 72, 75, 94, 104, 108, 109, 119, 123, 127, 128, 135, 140, 143, 162, 164, 166, 167], "godunov": [4, 94, 104, 148, 150, 152, 167], "method": [4, 5, 7, 17, 19, 34, 36, 37, 41, 45, 47, 57, 70, 72, 82, 84, 88, 91, 92, 94, 99, 103, 104, 109, 115, 116, 123, 140, 147, 148, 149, 150, 152, 158, 161, 162, 164, 167], "framework": [4, 86, 89, 124, 125], "applic": [4, 6, 15, 16, 18, 19, 21, 22, 24, 25, 26, 30, 31, 36, 37, 38, 39, 40, 44, 45, 46, 47, 48, 50, 59, 61, 62, 67, 70, 76, 77, 84, 93, 94, 95, 96, 98, 104, 109, 112, 114, 115, 116, 118, 119, 122, 123, 125, 126, 127, 129, 130, 140, 142, 144, 145, 148, 151, 156, 157, 162, 164, 165, 167, 168], "finit": [4, 17, 34, 36, 45, 49, 57, 63, 70, 71, 72, 75, 104, 130, 142, 151, 161, 162, 167], "volum": [4, 17, 31, 34, 36, 45, 49, 57, 63, 70, 71, 72, 96, 130, 142, 149, 151, 161, 162, 167], "riemann": [4, 5, 8, 22, 24, 25, 30, 31, 48, 59, 62, 67, 78, 86, 88, 94, 95, 104, 105, 106, 108, 111, 146, 148, 150, 152, 156, 157, 170], "solver": [4, 5, 6, 22, 24, 25, 27, 30, 48, 49, 60, 61, 62, 67, 85, 86, 87, 91, 94, 95, 98, 106, 118, 121, 123, 125, 126, 127, 128, 129, 130, 132, 137, 148, 150, 152, 156, 157, 170], "resolv": [4, 34, 36, 55, 58, 62, 113, 127, 144], "jump": [4, 5, 71, 84, 94, 104, 125, 148, 170], "discontinu": [4, 104, 170], "interfac": [4, 21, 24, 71, 86, 89, 92, 96, 97, 102, 104, 109, 140, 167, 168, 170], "wave": [4, 5, 6, 16, 17, 18, 27, 34, 42, 48, 49, 52, 55, 56, 75, 92, 94, 96, 101, 102, 104, 115, 123, 125, 126, 132, 141, 142, 143, 148, 149, 150, 151, 152, 154, 167], "propag": [4, 5, 6, 17, 18, 19, 27, 32, 49, 52, 55, 56, 75, 94, 96, 104, 115, 125, 140], "neighbor": [4, 18, 19, 36, 42, 70, 72, 115, 125, 144, 149, 150, 164], "formul": [4, 5, 19, 52, 68, 140, 148], "allow": [4, 6, 13, 24, 29, 30, 31, 34, 36, 37, 41, 42, 47, 48, 51, 54, 55, 57, 58, 62, 68, 70, 71, 75, 76, 78, 81, 82, 91, 96, 97, 98, 104, 106, 109, 110, 111, 115, 116, 119, 120, 123, 124, 125, 126, 127, 129, 130, 132, 135, 136, 137, 140, 142, 148, 150, 151, 152, 153, 158, 162, 164, 166], "easi": [4, 6, 11, 31, 41, 62, 71, 89, 98, 99, 100, 142, 153, 167], "extens": [4, 17, 19, 24, 26, 30, 32, 52, 55, 58, 62, 67, 71, 89, 96, 97, 109, 125, 126, 132, 148, 160, 164, 170], "problem": [4, 5, 7, 16, 17, 18, 19, 22, 26, 27, 29, 30, 31, 38, 39, 42, 45, 48, 49, 62, 66, 70, 71, 72, 75, 78, 82, 85, 87, 88, 93, 95, 96, 99, 102, 104, 107, 111, 116, 119, 120, 122, 123, 126, 130, 132, 136, 137, 140, 142, 144, 148, 149, 150, 151, 152, 153, 154, 161, 165], "algorithm": [4, 7, 19, 27, 34, 41, 42, 48, 56, 88, 94, 96, 97, 104, 108, 115, 127, 140, 142, 148, 150, 152, 164], "brief": [4, 59, 141, 151], "subroutin": [4, 6, 9, 16, 24, 34, 36, 67, 115, 123, 140, 148, 149, 161, 167, 170], "equat": [4, 5, 16, 17, 18, 27, 38, 39, 48, 49, 52, 64, 68, 82, 87, 88, 89, 91, 96, 97, 98, 101, 104, 105, 106, 118, 120, 123, 125, 127, 128, 140, 148, 150, 151, 152, 154, 162, 167, 170], "solv": [4, 5, 8, 16, 17, 18, 19, 22, 28, 38, 39, 49, 52, 60, 62, 64, 87, 89, 91, 94, 96, 101, 102, 105, 118, 128, 140, 141, 148, 162, 167, 170], "adapt": [4, 7, 17, 19, 32, 42, 49, 56, 57, 70, 71, 78, 88, 115, 127, 130, 132, 140, 142, 147, 148, 149, 151, 167], "mesh": [4, 7, 17, 19, 35, 49, 56, 70, 71, 78, 81, 88, 115, 130, 147, 148, 167], "amrclaw": [4, 5, 6, 12, 15, 16, 19, 21, 22, 24, 25, 26, 30, 38, 39, 41, 42, 44, 46, 47, 48, 50, 56, 59, 60, 61, 62, 64, 70, 71, 76, 77, 78, 85, 96, 97, 105, 111, 112, 115, 116, 139, 140, 142, 145, 146, 148, 151, 156, 157, 160, 161, 165], "detail": [4, 5, 10, 16, 24, 25, 27, 28, 30, 31, 32, 34, 36, 38, 39, 41, 44, 47, 50, 52, 55, 58, 61, 62, 64, 65, 66, 70, 71, 75, 78, 82, 86, 91, 92, 93, 94, 96, 97, 98, 99, 100, 101, 102, 104, 114, 115, 116, 120, 125, 127, 132, 135, 140, 142, 147, 148, 151, 153, 158, 162, 165, 166, 167, 170], "content": [4, 6, 25, 37, 45, 55, 59, 77, 78, 89, 96, 151, 162, 167, 168], "routin": [4, 5, 6, 16, 18, 19, 22, 27, 29, 32, 34, 38, 39, 47, 48, 49, 50, 55, 56, 66, 71, 72, 76, 77, 78, 81, 84, 86, 89, 91, 94, 97, 100, 101, 104, 106, 107, 115, 118, 119, 120, 123, 125, 127, 128, 130, 140, 144, 148, 150, 152, 158, 164, 165, 167, 168, 170], "special": [4, 7, 16, 48, 50, 55, 65, 78, 86, 97, 115, 135, 142, 164], "depth": [4, 5, 16, 17, 18, 19, 24, 32, 34, 35, 37, 42, 47, 48, 49, 52, 68, 72, 75, 81, 83, 141, 143, 144, 151, 162], "averag": [4, 6, 15, 17, 18, 19, 34, 42, 48, 49, 52, 53, 57, 71, 72, 102, 106, 120, 132, 140, 144, 145, 162, 164, 167], "geophys": [4, 16, 17, 25, 48, 52, 78, 148], "flow": [4, 16, 17, 25, 34, 35, 48, 50, 52, 78, 96, 113, 118, 130, 135, 140, 148, 151, 162, 167], "geoclaw": [4, 7, 12, 17, 18, 19, 25, 26, 30, 31, 32, 34, 35, 36, 37, 39, 41, 44, 46, 47, 56, 57, 59, 60, 61, 62, 63, 64, 68, 70, 72, 75, 77, 78, 81, 85, 96, 105, 111, 113, 114, 116, 139, 140, 141, 143, 144, 146, 148, 149, 154, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167], "parallel": [4, 24, 25, 47, 76, 87, 93, 95, 96, 98, 101, 103, 105, 109, 115, 116, 118, 125, 149], "ten": [4, 78], "thousand": [4, 78], "core": [4, 12, 78, 116, 127, 137], "wish": [4, 13, 14, 15, 24, 31, 38, 39, 52, 55, 62, 71, 80, 81, 96, 101, 104, 105, 107, 111, 113, 115, 125, 145, 153, 156, 157, 165], "discrib": 4, "book": [4, 12, 17, 27, 31, 46, 85, 103, 140], "levequ": [4, 16, 17, 26, 32, 56, 78, 92, 94, 96, 104, 110, 140, 148, 167, 170], "fvmhp": [4, 12, 16, 17, 27, 46, 78, 140, 148, 167, 170], "virtual": [4, 13, 27, 29, 106], "were": [4, 6, 14, 19, 22, 34, 45, 47, 58, 64, 67, 71, 72, 89, 115, 118, 119, 125, 128, 132, 135, 136, 137, 142, 144, 154, 162], "4": [4, 7, 8, 9, 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146, 148, 149, 150, 151, 152, 153, 158, 160, 161, 162], "bibliographi": [4, 27], "paper": [4, 5, 6, 16, 19, 32, 48, 58, 92, 96], "distribut": [4, 12, 13, 31, 32, 58, 65, 75, 78, 86, 104, 110, 130], "under": [4, 7, 24, 34, 36, 40, 55, 56, 58, 61, 65, 67, 81, 86, 94, 96, 116, 125, 127, 138], "term": [4, 18, 19, 27, 48, 49, 52, 65, 75, 89, 94, 95, 104, 115, 118, 126, 127, 136, 137, 141, 148, 150, 151, 152, 156, 157], "berkelei": [4, 65, 86], "bsd": [4, 65, 86, 127], "contribut": [4, 26, 27, 61, 86, 89, 96, 101, 104, 113, 116], "its": [4, 6, 13, 18, 19, 24, 31, 34, 42, 52, 55, 65, 67, 70, 75, 77, 86, 91, 92, 93, 94, 96, 101, 103, 104, 106, 109, 115, 150, 164, 170], "incept": 4, "1994": [4, 65], "major": [4, 24, 59, 86, 89, 117, 119, 120, 121, 126, 128, 133, 136, 137], "design": [4, 29, 30, 55, 86, 88, 108, 142, 166], "made": [4, 19, 20, 24, 30, 32, 37, 62, 103, 106, 118, 119, 120, 125, 127, 130, 132, 135, 136, 137, 142, 144, 151, 159, 162, 164, 167], "individu": [4, 24, 25, 55, 63, 66, 67, 71, 94, 115, 116, 158], "randal": [4, 17, 96], "univers": [4, 17, 26, 58, 65, 86, 103], "washington": [4, 17, 26, 58, 65, 129, 142, 164], "rjlevequ": [4, 19, 30, 31], "marsha": [4, 6, 17], "berger": [4, 6, 17], "courant": [4, 6, 49, 115, 126, 148, 149, 150, 152], "institut": 4, "nyu": 4, "mjberger": 4, "jan": [4, 59], "olav": 4, "langseth": [4, 17], "norwegian": 4, "defenc": 4, "research": [4, 17, 48, 52, 86, 104, 114], "establish": 4, "david": [4, 17, 86, 96, 104], "georg": [4, 17, 32], "usg": [4, 32, 166], "cascad": 4, "volcano": 4, "observatori": 4, "dlgeorg": 4, "ketcheson": [4, 17, 79, 86, 96, 104], "kaust": [4, 26], "ketch": 4, "kyle": [4, 17, 86, 92, 96, 97, 102], "mandli": [4, 17, 86, 92, 96, 97, 102], "ut": 4, "austin": 4, "contributor": [4, 26, 65, 96], "aron": [4, 17, 86, 96], "ahmadia": [4, 17, 86, 96], "amal": [4, 17, 86, 96], "alghamdi": [4, 17, 86, 96], "ghamdi": 4, "ian": 4, "bollig": 4, "bolliger32": 4, "peter": 4, "blossei": 4, "donna": [4, 17], "calhoun": [4, 17, 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127, 132, 138, 140, 158], "itself": [4, 75, 81, 110, 130, 140, 151, 164], "well": [4, 6, 19, 30, 35, 48, 49, 55, 56, 58, 62, 63, 70, 75, 76, 77, 78, 81, 84, 85, 103, 104, 113, 126, 127, 130, 135, 141, 144, 148, 149, 156, 157, 158, 167, 170], "citat": [4, 19, 59], "similar": [4, 13, 16, 18, 30, 34, 36, 39, 47, 49, 55, 64, 88, 89, 97, 101, 104, 108, 127, 132, 151, 158, 159, 160, 162], "team": [4, 26, 65], "2020": [4, 26, 27, 58, 65, 110, 113, 130, 131, 132, 138, 140], "7": [4, 6, 14, 31, 34, 36, 41, 42, 47, 51, 58, 64, 68, 70, 77, 82, 85, 94, 105, 111, 115, 132, 138, 142, 143, 144, 149, 150], "http": [4, 12, 13, 17, 19, 26, 28, 30, 31, 32, 42, 51, 55, 56, 58, 59, 61, 62, 65, 70, 75, 85, 86, 89, 90, 97, 99, 101, 110, 111, 118, 122, 124, 125, 126, 128, 129, 132, 133, 134, 135, 136, 137, 138, 141, 158, 164], "www": [4, 13, 17, 32, 42, 48, 58, 65, 70, 86, 89, 94, 97, 99, 118, 126, 128, 135, 136, 158, 164], "org": [4, 17, 19, 48, 56, 58, 59, 65, 86, 89, 90, 94, 97, 99, 110, 111, 118, 124, 126, 128, 132, 133, 134, 135, 136, 137, 164], "doi": [4, 17, 56, 59, 61, 118, 130, 131, 132, 133, 134, 135, 136, 137, 138], "10": [4, 17, 18, 19, 30, 32, 34, 36, 42, 49, 55, 56, 57, 59, 82, 88, 91, 94, 115, 124, 125, 127, 130, 131, 132, 133, 134, 135, 136, 137, 138, 142, 148, 149, 150, 152, 154, 162], "5281": [4, 59, 118, 130, 131, 132, 133, 134, 135, 136, 137, 138], "zenodo": [4, 61, 118, 130, 131, 132, 133, 134, 135, 136, 137, 138], "4025432": [4, 131, 138], "here": [4, 13, 16, 18, 19, 31, 36, 41, 42, 52, 59, 62, 63, 70, 78, 82, 84, 88, 91, 96, 97, 99, 101, 102, 107, 108, 111, 113, 115, 123, 140, 141, 142, 159, 164, 170], "bibtex": [4, 59], "misc": [4, 129, 131], "url": [4, 12, 17, 55, 59, 127, 128, 162, 164], "year": [4, 17, 24, 55, 63, 96, 117, 128, 158], "releas": [4, 19, 20, 24, 27, 30, 31, 46, 49, 55, 60, 61, 62, 90, 96, 97, 104, 105, 110], "refer": [4, 5, 19, 22, 32, 34, 35, 36, 38, 39, 41, 48, 50, 55, 59, 66, 67, 71, 75, 88, 92, 94, 97, 98, 102, 104, 106, 111, 113, 127, 129, 139, 140, 142, 151, 158, 162, 164, 166, 167], "particular": [4, 6, 12, 22, 24, 30, 32, 34, 44, 47, 48, 50, 52, 55, 56, 59, 65, 66, 67, 71, 78, 82, 83, 85, 86, 88, 102, 103, 104, 106, 108, 113, 114, 115, 116, 118, 120, 123, 124, 125, 126, 127, 129, 130, 132, 147, 158, 159, 170], "obtain": [4, 6, 12, 34, 46, 47, 49, 50, 52, 62, 63, 72, 97, 98, 99, 115, 118, 132, 140, 144, 153, 162, 170], "your": [4, 6, 15, 16, 18, 19, 21, 22, 26, 27, 28, 36, 38, 40, 44, 47, 57, 58, 59, 60, 61, 62, 76, 81, 82, 84, 86, 87, 88, 89, 90, 93, 95, 96, 97, 98, 107, 108, 110, 111, 112, 113, 115, 116, 119, 127, 137, 140, 145, 146, 156, 157, 162, 165, 167], "multipl": [4, 5, 6, 13, 25, 30, 34, 35, 42, 47, 81, 88, 94, 97, 98, 109, 111, 116, 119, 125, 129, 139, 140, 149, 158, 159], "past": [4, 23, 27, 58, 64, 70, 103, 125, 128, 132, 138, 142, 143, 151], "17605": [4, 59, 138], "osf": [4, 138], "io": [4, 58, 59, 85, 98, 103, 138], "kmw6h": [4, 59, 138], "recent": [4, 13, 24, 29, 32, 49, 54, 58, 61, 66, 68, 76, 82, 84, 85, 118, 124, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 140, 154, 166], "articl": [4, 17, 96, 153], "l": [4, 7, 17, 34, 43, 61, 115, 140, 146, 150], "hadjimichael": [4, 17, 86], "2016": [4, 17, 26, 58], "build": [4, 17, 30, 31, 58, 59, 62, 71, 89, 99, 109, 126, 137, 142], "open": [4, 13, 17, 27, 30, 31, 32, 51, 55, 63, 81, 86, 90, 94, 97, 109, 142, 146, 166, 168], "ecosystem": [4, 17], "pde": [4, 5, 17, 60, 61, 62, 78, 85, 96, 108, 148, 167], "peerj": [4, 17], "scienc": [4, 17, 86], "7717": [4, 17], "c": [4, 16, 17, 30, 31, 32, 44, 55, 63, 65, 82, 86, 88, 89, 94, 102, 107, 108, 140], "68": [4, 17], "mandli2016clawpack": [4, 17], "yianni": [4, 17, 86], "journal": [4, 17, 56, 96, 153], "e68": [4, 17], "publish": [4, 17, 58, 96], "inc": [4, 17, 71], "least": [4, 5, 6, 13, 37, 47, 55, 63, 64, 70, 71, 107, 115, 116, 124, 125, 132, 148, 150, 154, 162, 164], "regard": [4, 41, 124, 158], "click": [4, 12, 13, 20, 30, 55, 58, 59, 116, 118, 126, 135, 136, 137, 138], "link": [4, 11, 13, 15, 17, 20, 21, 22, 26, 27, 30, 34, 36, 44, 45, 48, 55, 56, 57, 58, 59, 61, 63, 110, 111, 112, 118, 126, 135, 136, 137, 138, 140, 141, 143, 145, 152, 156, 157, 162, 166], "classic": [4, 6, 12, 15, 16, 21, 22, 24, 25, 26, 30, 44, 45, 46, 50, 59, 60, 61, 62, 67, 74, 76, 77, 78, 85, 86, 88, 91, 93, 94, 95, 96, 97, 101, 111, 112, 116, 139, 140, 145, 146, 149, 151, 157, 165, 167], "2d": [4, 7, 8, 15, 16, 18, 21, 24, 27, 29, 32, 34, 36, 37, 41, 42, 48, 49, 51, 56, 63, 71, 76, 81, 86, 88, 94, 96, 100, 104, 110, 112, 115, 118, 123, 125, 126, 127, 128, 129, 132, 136, 141, 142, 144, 145, 148, 149, 152, 154, 156, 157, 164, 168, 170], "leveque97": [4, 17], "3d": [4, 7, 15, 19, 24, 32, 71, 76, 81, 86, 96, 100, 104, 112, 115, 118, 119, 121, 123, 124, 125, 128, 136, 140, 142, 145, 148, 149, 156, 157, 168, 170], "langsethleveque00": [4, 17], "amr": [4, 7, 8, 16, 18, 19, 22, 25, 27, 29, 30, 34, 36, 37, 41, 47, 48, 49, 56, 63, 71, 72, 73, 77, 78, 81, 86, 94, 118, 124, 126, 127, 128, 130, 132, 135, 144, 147, 148, 150, 152, 161, 167], "bergerleveque98": [4, 6, 7, 17], "f": [4, 5, 6, 16, 17, 18, 22, 24, 27, 29, 30, 33, 66, 67, 89, 91, 97, 98, 101, 102, 104, 106, 107, 109, 119, 123, 126, 127, 128, 132, 141, 148, 149, 150, 152, 164, 165, 167], "balelevmitross02": [4, 17, 148, 170], "bergergeorgelevequemandli11": [4, 17], "levequegeorgeberg": [4, 17], "order": [4, 5, 6, 13, 16, 17, 18, 19, 31, 32, 34, 36, 47, 52, 57, 62, 64, 67, 70, 71, 72, 75, 77, 78, 82, 84, 85, 86, 88, 91, 92, 94, 96, 97, 98, 100, 101, 104, 108, 109, 110, 111, 115, 118, 123, 127, 132, 136, 140, 142, 144, 147, 148, 149, 150, 152, 158, 162, 164, 165, 167, 170], "sharpclaw": [4, 25, 27, 78, 86, 93, 95, 96, 101, 119, 140], "ketparlev13": [4, 17, 78, 96, 140], "ketchesonmandliet": [4, 17], "support": [4, 8, 13, 18, 19, 24, 36, 37, 41, 44, 49, 52, 55, 60, 61, 73, 75, 77, 85, 86, 88, 89, 94, 97, 98, 100, 102, 104, 115, 118, 123, 125, 126, 127, 128, 132, 133, 135, 136, 140, 142, 148, 149, 151, 158, 159, 162, 165, 168], "part": [4, 5, 19, 24, 26, 32, 36, 48, 51, 52, 62, 63, 64, 86, 89, 99, 105, 106, 108, 110, 114, 116, 118, 129, 167], "nsf": 4, "grant": [4, 86], "dm": 4, "8657319": 4, "9204329": 4, "9303404": 4, "9505021": 4, "96226645": 4, "9803442": 4, "0106511": 4, "cm": [4, 32, 75, 82, 142], "0245206": 4, "0609661": 4, "0914942": 4, "1216732": 4, "ear": 4, "1331412": 4, "cmmi": 4, "1536198": 4, "doe": [4, 5, 11, 16, 19, 22, 29, 30, 36, 42, 43, 49, 52, 55, 57, 58, 62, 71, 78, 82, 85, 94, 103, 106, 109, 115, 116, 120, 125, 129, 132, 135, 139, 140, 141, 144, 158, 164, 165, 167], "de": [4, 17, 86, 96, 142], "fg06": 4, "93er25181": 4, "fg03": 4, "96er25292": 4, "fg02": 4, "88er25053": 4, "92er25139": 4, "00er2592": 4, "fc02": 4, "01er25474": 4, "afosr": 4, "f49620": 4, "94": 4, "0132": 4, "nih": 4, "5r01ar53652": 4, "onr": 4, "n00014": 4, "09": [4, 94, 102, 161], "0649": 4, "council": 4, "nfr": 4, "through": [4, 13, 30, 36, 38, 39, 47, 49, 52, 55, 70, 71, 78, 81, 89, 101, 106, 108, 109, 111, 114, 115], 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58, 59, 75, 86, 90, 125, 126, 137, 149, 164], "planetari": 4, "defens": 4, "offic": 4, "opinion": 4, "conclus": [4, 55], "express": [4, 32, 65, 86, 105, 142], "materi": [4, 45, 65, 75, 86, 113, 130], "those": [4, 6, 10, 12, 18, 19, 24, 26, 52, 55, 56, 59, 70, 78, 88, 89, 91, 98, 101, 106, 115, 116, 119, 130, 132, 138, 139, 153, 160, 164, 167], "necessarili": [4, 42, 77, 97, 116], "agenc": [4, 60, 158, 159], "approach": [5, 7, 13, 18, 19, 30, 31, 41, 47, 49, 58, 61, 74, 81, 89, 96, 99, 101, 109, 115, 123, 125, 126, 128, 140, 141, 147, 167, 170], "introduc": [5, 16, 21, 34, 35, 36, 37, 42, 49, 82, 118, 130, 132, 139, 142, 144, 149, 170], "6": [5, 19, 24, 27, 30, 32, 34, 36, 41, 42, 44, 47, 51, 52, 55, 58, 63, 68, 70, 71, 72, 76, 82, 95, 96, 97, 101, 102, 104, 105, 110, 111, 115, 130, 138, 140, 142, 148, 149, 162, 169], "what": [5, 6, 9, 13, 14, 18, 19, 24, 27, 30, 32, 33, 34, 41, 49, 52, 54, 55, 58, 59, 61, 62, 63, 66, 67, 70, 71, 72, 77, 81, 88, 91, 95, 103, 106, 108, 111, 114, 115, 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170], "makefil": [5, 6, 11, 14, 15, 16, 21, 22, 25, 27, 30, 36, 38, 39, 44, 58, 76, 78, 82, 84, 89, 95, 96, 115, 118, 119, 123, 125, 127, 128, 130, 136, 144, 145, 148, 150, 151, 152, 153, 156, 157, 162, 165, 167], "coeffici": [5, 68, 101, 102, 104, 106, 107, 108, 140, 151], "matric": [5, 140, 170], "transpos": 5, "vice": 5, "versa": 5, "q_t": [5, 101, 102, 104, 108, 167, 170], "q_x": [5, 102, 108, 170], "_x": [5, 42, 70, 102, 104, 164, 167, 170], "eigenvalu": 5, "unchang": [5, 71], "upon": [5, 106], "transform": [5, 44], "eigenvector": [5, 140, 170], "right": [5, 19, 32, 34, 65, 68, 75, 86, 94, 99, 101, 102, 106, 108, 132, 139, 140, 142, 170], "rp1_acoustics_variable_adjoint": 5, "f90": [5, 9, 15, 18, 19, 22, 33, 34, 36, 42, 47, 49, 56, 66, 67, 76, 77, 85, 101, 112, 115, 119, 123, 125, 127, 128, 129, 130, 132, 133, 136, 140, 141, 144, 145, 154, 156, 157, 162, 165, 167], "boundari": [5, 7, 19, 22, 27, 42, 55, 63, 67, 70, 75, 76, 89, 94, 102, 104, 108, 113, 120, 123, 127, 142, 148, 150, 152], "condit": [5, 7, 19, 22, 27, 65, 67, 78, 86, 87, 88, 89, 91, 98, 104, 112, 119, 120, 123, 127, 143, 148, 150, 151, 152], "adjust": [5, 13, 18, 19, 22, 34, 35, 48, 63, 77, 94, 98, 136, 139, 143, 148, 167], "principl": [5, 164, 167], "vanish": 5, "dure": [5, 24, 34, 42, 47, 63, 75, 78, 119, 143, 144, 150, 151, 152, 154, 162], "integr": [5, 24, 57, 64, 86, 96, 98, 104, 119, 120, 124, 150, 152, 161, 162, 167], "qinit": [5, 22, 24, 42, 48, 66, 67, 89, 132, 143, 144, 167], "setrun": [5, 6, 7, 8, 14, 16, 21, 22, 27, 34, 35, 36, 37, 38, 39, 41, 42, 43, 45, 48, 49, 50, 52, 63, 64, 66, 68, 70, 77, 78, 82, 96, 112, 113, 115, 119, 123, 124, 125, 128, 130, 132, 135, 136, 137, 139, 140, 143, 144, 154, 158, 162, 165, 167], "clawdata": [5, 19, 41, 49, 77, 119, 123, 139, 148, 149, 150, 151, 152], "tfinal": [5, 77, 88, 91, 108, 139, 148, 150, 152], "via": [5, 13, 24, 25, 26, 30, 31, 32, 36, 38, 39, 44, 47, 50, 52, 55, 58, 59, 61, 62, 64, 66, 70, 71, 75, 76, 78, 82, 85, 88, 94, 97, 100, 103, 105, 107, 111, 115, 116, 118, 127, 130, 140, 142, 146, 151, 153, 156, 157, 162, 164, 167], "num_output_tim": [5, 77, 88, 91, 98, 139, 148, 150, 152], "larg": [5, 6, 12, 19, 22, 36, 37, 38, 39, 42, 52, 55, 57, 58, 71, 76, 81, 96, 98, 99, 115, 116, 118, 124, 132, 135, 139, 142, 144, 148, 149, 164, 166], "frequent": [5, 22, 29, 36, 47, 64, 107, 124, 135], "enough": [5, 47, 49, 58, 64, 70, 149, 159, 161, 162], "them": [5, 13, 20, 24, 30, 31, 32, 34, 47, 51, 55, 58, 71, 78, 86, 88, 93, 97, 98, 99, 101, 109, 113, 116, 118, 120, 129, 135, 136, 137, 142, 155, 158, 164, 167], "reason": [5, 19, 49, 52, 55, 63, 75, 76, 78, 99, 101, 115, 148], "output_format": [5, 36, 37, 77, 91, 98, 135, 148, 150, 152], "binari": [5, 36, 44, 47, 59, 65, 86, 98, 100, 124, 135, 136, 139, 148, 164, 168], "manner": [5, 36, 42, 47, 55, 64, 70, 75, 81, 127, 144, 148, 156, 157, 162], "attribut": [5, 7, 18, 24, 32, 36, 37, 41, 47, 70, 75, 81, 83, 84, 88, 91, 94, 97, 99, 101, 103, 104, 115, 118, 119, 124, 128, 136, 139, 147, 148, 149, 151, 158, 164], "clawutil": [5, 11, 14, 21, 22, 25, 30, 43, 44, 54, 59, 60, 61, 66, 111, 116, 146, 148, 149, 150, 152, 164, 165], "clawrundata": [5, 47, 63, 128, 139, 148, 149, 150, 152], "adjointdata": [5, 128, 129], "ia": 5, "attribur": 5, "toler": [5, 34, 102, 109, 115, 116, 125, 149, 150, 151], "rundata": [5, 18, 19, 24, 34, 36, 41, 42, 47, 49, 63, 64, 115, 119, 130, 137, 139, 144, 148, 149, 150, 151, 152, 154], "use_adjoint": 5, "adjoint_outdir": 5, "abspath": [5, 41], "_output": [5, 13, 14, 34, 36, 38, 39, 47, 54, 64, 71, 82, 84, 93, 98, 100, 103, 124, 131, 165], "period": [5, 6, 16, 34, 66, 88, 101, 115, 118, 148, 150, 152], "t1": [5, 41, 47, 63, 64, 115, 132, 149, 150, 151], "t0": [5, 18, 19, 77, 139, 148, 150, 151, 152, 162], "t2": [5, 41, 47, 63, 64, 115, 132, 149, 150, 151], "addit": [5, 7, 13, 16, 17, 19, 25, 26, 30, 31, 34, 36, 39, 40, 41, 48, 49, 50, 63, 70, 75, 77, 78, 82, 83, 89, 92, 94, 96, 98, 104, 105, 106, 113, 115, 118, 123, 125, 126, 127, 128, 131, 132, 134, 135, 136, 140, 142, 148, 152, 158, 161, 162, 167, 168], "aux": [5, 6, 15, 22, 24, 29, 47, 57, 89, 96, 97, 98, 101, 103, 104, 106, 107, 119, 120, 125, 127, 140, 141, 145, 148, 149, 150, 151, 152, 167], "inner": [5, 115, 128], "product": [5, 32, 65, 86, 109, 115, 128], "amrdata": [5, 24, 34, 115, 130, 132, 149, 150, 151], "aux_typ": [5, 149, 150], "append": [5, 22, 34, 36, 41, 42, 47, 55, 64, 82, 91, 103, 115, 124, 125, 137, 139, 140, 150, 151], "num_aux": [5, 89, 97, 99, 101, 102, 106, 140, 148, 149, 150, 152, 167], "len": [5, 32, 37, 94, 150, 152, 164], "innerprod_index": 5, "base": [5, 6, 13, 19, 22, 23, 24, 30, 31, 32, 34, 35, 36, 48, 49, 51, 55, 56, 57, 58, 63, 64, 67, 68, 70, 71, 75, 78, 89, 91, 92, 94, 96, 97, 102, 103, 104, 106, 108, 109, 115, 117, 123, 126, 128, 132, 135, 136, 143, 148, 149, 150, 151, 152, 158, 164, 167, 170], "richardson": [5, 7, 24, 149, 150], "error": [5, 16, 22, 38, 39, 43, 55, 62, 71, 76, 82, 91, 96, 97, 98, 109, 115, 116, 128, 132, 137, 149, 150, 158, 165], "estimat": [5, 150], "flag_richardson": [5, 115, 124, 149, 150], "flag_richardson_tol": [5, 115, 149, 150], "1e": [5, 70, 152], "flag2refin": [5, 7, 24, 149, 150], "flag2refine_tol": [5, 115, 149, 150], "01": [5, 17, 42, 77, 94, 164], "we": [5, 6, 18, 19, 24, 26, 28, 34, 38, 39, 41, 42, 47, 52, 55, 57, 58, 59, 60, 62, 67, 70, 72, 75, 81, 84, 88, 89, 90, 91, 93, 94, 97, 98, 99, 100, 101, 104, 105, 106, 107, 108, 109, 110, 113, 116, 127, 130, 135, 137, 140, 141, 142, 164], "attempt": [5, 8, 11, 22, 35, 38, 39, 66, 97, 103, 109, 116, 119, 133, 158, 164, 165], "estim": [5, 68, 115, 149, 151], "step": [5, 6, 10, 16, 18, 19, 21, 30, 34, 36, 38, 39, 40, 47, 55, 58, 59, 64, 71, 77, 78, 81, 84, 86, 87, 88, 89, 91, 98, 101, 104, 106, 108, 113, 115, 118, 119, 124, 125, 135, 139, 140, 146, 148, 149, 150, 151, 152, 162, 170], "extrapol": [5, 7, 16, 24, 72, 101, 108, 127, 148, 149, 150, 152], "togeth": [5, 16, 30, 31, 32, 58, 60, 75, 115, 135], "experiment": [5, 86], "simpli": [5, 13, 19, 36, 38, 39, 40, 42, 47, 49, 55, 57, 66, 67, 70, 72, 88, 90, 91, 93, 98, 99, 105, 116, 118, 140, 142, 153, 158, 164, 167, 168], "magnitud": [5, 32, 115, 127, 151], "greater": [5, 34, 63, 68, 70, 105, 115, 139, 148, 149, 151], "model": [5, 12, 16, 17, 18, 19, 26, 27, 32, 34, 44, 48, 49, 50, 56, 57, 68, 98, 115, 124, 129, 130, 131, 142, 143, 144, 151, 154, 158, 159, 162], "davisleveque2016": [5, 17], "chile2010_adjoint": 5, "shallow": [5, 15, 16, 17, 18, 19, 27, 34, 36, 42, 48, 49, 52, 56, 70, 78, 89, 96, 112, 118, 120, 121, 123, 125, 127, 128, 136, 137, 140, 144, 145, 151, 156, 157, 162, 167], "water": [5, 16, 17, 18, 19, 27, 36, 42, 47, 48, 49, 50, 51, 52, 63, 70, 78, 81, 89, 96, 118, 120, 121, 125, 127, 128, 137, 140, 142, 143, 144, 151, 162, 164, 166, 167], "while": [5, 13, 16, 19, 32, 42, 55, 71, 75, 82, 84, 89, 94, 98, 99, 104, 109, 127, 140, 144, 151, 166], "suitabl": [5, 8, 16, 18, 19, 22, 48, 52, 55, 73, 77, 103, 114, 140, 143, 158, 164], "To": [5, 6, 13, 14, 18, 19, 20, 24, 27, 30, 31, 38, 39, 40, 41, 42, 43, 47, 50, 53, 55, 56, 59, 66, 69, 70, 71, 75, 76, 77, 82, 84, 85, 88, 90, 92, 93, 96, 97, 98, 99, 100, 101, 104, 105, 108, 111, 113, 114, 115, 116, 118, 123, 125, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 139, 143, 146, 148, 149, 153, 162, 168], "date": [5, 17, 30, 43, 51, 55, 58, 59, 66, 82, 158, 165], "across": [5, 115, 125, 162, 164], "ocean": [5, 16, 17, 19, 34, 49, 52, 55, 113, 115, 142, 151, 156, 157, 162], "wai": [5, 6, 13, 16, 19, 28, 30, 36, 38, 39, 41, 42, 47, 49, 55, 57, 58, 61, 62, 63, 65, 66, 82, 84, 85, 86, 88, 91, 93, 94, 99, 101, 103, 105, 108, 110, 111, 113, 114, 119, 125, 126, 127, 130, 137, 138, 140, 142, 147, 148, 155, 159, 162, 167, 169, 170], "target": [5, 62, 82, 89, 101, 130], "possibli": [5, 32, 36, 70, 88, 94, 111, 118, 124, 144], "deep": [5, 49, 70], "amplitud": [5, 125], "compar": [5, 18, 19, 24, 39, 47, 49, 52, 55, 59, 82, 98, 115, 116, 143, 149, 160, 166, 170], "essenti": [5, 57, 71, 104, 151, 162], "rest": [5, 24, 84, 113, 127, 143, 156, 157, 162, 164], "henc": [5, 36, 57, 58, 67, 72, 104, 110, 111, 115, 144], "take": [5, 6, 24, 29, 30, 32, 34, 37, 51, 58, 68, 70, 71, 75, 82, 88, 94, 101, 104, 108, 109, 110, 115, 116, 118, 122, 128, 136, 144, 148, 149, 150, 151, 164, 167, 170], "rpn2_geoclaw_adjoint_qwav": 5, "rpt2_geoclaw_adjoint_qwav": 5, "non": [5, 16, 59, 70, 78, 89, 101, 108, 128, 130, 148, 150, 152, 158, 170], "vector": [5, 24, 88, 92, 98, 106, 127, 135, 140, 141], "split": [5, 6, 76, 94, 97, 104, 123, 124, 132, 148, 149, 150, 152, 161, 167, 170], "flux": [5, 17, 34, 36, 37, 94, 102, 104, 140, 148, 170], "comment": [5, 11, 19, 26, 53, 59, 126, 135, 139], "rpn2": [5, 140], "basic": [6, 10, 12, 27, 32, 38, 40, 48, 61, 70, 71, 88, 94, 96, 97, 98, 102, 104, 116, 140, 141, 158, 170], "strategi": 6, "logic": [6, 16, 17, 34, 132, 151], "rectangular": [6, 7, 16, 17, 32, 34, 37, 41, 42, 48, 50, 63, 70, 94, 115, 127, 130, 135, 149, 151, 162], "too": [6, 19, 51, 55, 58, 59, 118, 124, 142, 150, 152, 154], "portion": [6, 36, 42, 55, 70, 89, 135, 161], "factor": [6, 55, 149, 151, 161, 164], "direct": [6, 8, 16, 24, 32, 34, 36, 38, 39, 47, 49, 51, 55, 59, 63, 65, 66, 71, 75, 76, 82, 86, 91, 101, 108, 115, 126, 140, 148, 149, 151, 164], "anisotrop": [6, 24], "perhap": [6, 12, 19, 34, 42, 47, 58, 82, 106, 109, 115, 142], "section": [6, 13, 16, 36, 38, 39, 42, 44, 49, 50, 52, 58, 59, 67, 71, 81, 84, 96, 116, 132, 139, 148, 151, 164], "cfl": [6, 49, 94, 98, 104, 108, 118, 119, 124, 148, 150, 151, 152], "spatial": [6, 17, 27, 32, 36, 37, 41, 42, 47, 48, 49, 64, 68, 72, 101, 115, 119, 123, 130, 132, 140, 143, 149, 150, 151, 152, 170], "reduc": [6, 16, 36, 42, 49, 55, 118, 124, 126, 135, 170], "thu": [6, 51, 98, 101, 127, 158], "proce": [6, 18, 19, 30, 151], "advanc": [6, 17, 36, 56, 70, 76, 108, 124, 136, 148, 149, 167], "taken": [6, 34, 70, 75, 98, 104, 115, 148, 167], "around": [6, 32, 34, 42, 63, 97, 113, 116, 130, 149, 150, 158, 164, 167], "librari": [6, 13, 15, 16, 18, 19, 22, 24, 27, 29, 30, 34, 36, 38, 39, 44, 47, 49, 56, 63, 66, 76, 77, 78, 86, 92, 97, 99, 104, 109, 111, 112, 115, 125, 130, 144, 145, 149, 156, 157, 165, 167], "bcnamr": [6, 16, 127, 148, 150, 167], "check": [6, 14, 15, 16, 22, 34, 38, 39, 43, 44, 54, 55, 56, 58, 59, 60, 62, 66, 71, 82, 85, 88, 89, 91, 96, 99, 103, 104, 106, 108, 109, 111, 112, 115, 120, 129, 142, 144, 145, 149, 150, 156, 157, 158, 164, 165, 166, 167], "denot": [6, 19, 24, 37, 47, 57, 140, 164], "procedur": [6, 16, 42, 48, 49, 59, 167], "updat": [6, 12, 13, 24, 25, 27, 34, 53, 56, 61, 62, 64, 84, 96, 104, 106, 107, 110, 113, 118, 119, 123, 125, 126, 127, 128, 129, 130, 140, 149, 150, 152, 155, 158, 161, 167], "consist": [6, 27, 34, 36, 51, 55, 59, 63, 99, 110, 125, 135, 136, 140, 142, 151, 162, 167], "replac": [6, 13, 31, 36, 41, 47, 52, 56, 58, 59, 61, 64, 66, 81, 89, 93, 97, 99, 100, 101, 102, 106, 109, 116, 118, 119, 125, 127, 129, 130, 135, 139, 140, 144, 164, 165], "ly": [6, 70], "within": [6, 16, 30, 36, 37, 58, 62, 70, 72, 78, 82, 100, 109, 111, 115, 140, 142, 147, 153, 164], "approxim": [6, 16, 18, 19, 27, 35, 52, 55, 72, 75, 140], "lead": [6, 13, 24, 34, 36, 52, 55, 68, 71, 75, 111, 114, 132, 144, 149], "total": [6, 32, 36, 55, 75, 77, 98, 104, 148, 149, 150, 152, 161], "mass": [6, 98, 118, 154], "restor": 6, "global": [6, 14, 94, 106, 109, 118, 143, 162, 166, 167], "fix": [6, 21, 22, 24, 27, 35, 37, 41, 47, 48, 49, 58, 59, 63, 64, 66, 70, 72, 86, 97, 102, 118, 119, 120, 121, 122, 123, 124, 125, 126, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 141, 148, 150, 152, 164], "up": [6, 13, 19, 24, 30, 31, 32, 34, 36, 38, 39, 42, 43, 47, 48, 55, 58, 59, 63, 66, 70, 71, 75, 77, 82, 88, 89, 91, 93, 95, 96, 97, 99, 104, 105, 108, 111, 113, 115, 116, 118, 123, 124, 127, 130, 132, 137, 142, 144, 147, 150, 152, 161, 162, 165, 166], "style": [6, 24, 30, 32, 36, 41, 53, 55, 70, 73, 82, 86, 91, 127, 151], "olig": [6, 17], "colella": [6, 17], "bergeroliger84": [6, 17], "bergercolella89": [6, 17], "fortran": [6, 9, 11, 13, 14, 19, 22, 25, 29, 30, 32, 34, 35, 36, 37, 38, 47, 48, 50, 57, 60, 62, 66, 67, 68, 72, 76, 77, 78, 81, 84, 86, 88, 89, 91, 94, 96, 97, 99, 101, 102, 104, 105, 106, 109, 111, 118, 123, 124, 125, 127, 128, 129, 135, 136, 140, 141, 146, 149, 150, 151, 152, 158, 160, 161, 162], "written": [6, 11, 27, 32, 34, 36, 37, 43, 47, 62, 63, 64, 65, 75, 77, 78, 82, 86, 95, 96, 97, 101, 125, 140, 148, 149, 150, 151, 152, 158, 164, 167], "ga": [6, 102], "dynam": [6, 22, 32, 36, 52, 75, 78, 149], "merg": [6, 13, 27, 30, 56, 58, 59, 62, 123], "earli": [6, 22, 144], "mjb": [6, 17], "rjl": [6, 17, 111, 129], "fulli": [6, 52, 55, 56, 126, 130, 140, 151, 158, 159], "consid": [6, 42, 52, 62, 70, 89, 111, 146, 153, 164], "adjac": [6, 16, 34, 48, 115, 144, 148], "equival": [6, 47, 56, 57, 63, 64, 77, 129, 135, 162], "copi": [6, 14, 15, 16, 19, 38, 39, 47, 55, 58, 59, 62, 71, 88, 91, 101, 106, 112, 113, 114, 115, 120, 124, 127, 131, 144, 145, 149, 153, 156, 157, 162, 167], "interior": [6, 16, 42, 77, 106], "howev": [6, 13, 16, 18, 19, 24, 34, 38, 39, 42, 44, 49, 50, 52, 55, 62, 65, 67, 70, 72, 75, 76, 77, 86, 89, 96, 115, 116, 125, 127, 129, 143, 144, 147, 151, 161], "lie": [6, 34, 35, 37, 70, 72, 115, 130, 142], "outsid": [6, 16, 41, 63, 70, 130, 142, 144, 162, 164], "li": [6, 16, 34, 37, 72, 115, 142], "along": [6, 14, 16, 19, 26, 29, 32, 34, 42, 47, 55, 58, 61, 75, 77, 111, 115, 118, 123, 138, 139, 142, 144, 151, 166], "unless": [6, 34, 43, 44, 63, 102, 110, 143, 148, 149, 164], "standard": [6, 16, 19, 32, 34, 36, 49, 55, 57, 71, 77, 89, 92, 104, 111, 115, 116, 150, 151, 152, 153, 162, 167, 170], "beyond": [6, 32, 110, 127], "modifi": [6, 9, 14, 15, 16, 18, 19, 22, 24, 29, 34, 38, 39, 42, 47, 48, 58, 59, 62, 64, 66, 71, 74, 82, 89, 92, 94, 96, 101, 111, 112, 113, 114, 115, 122, 124, 125, 126, 127, 132, 142, 144, 145, 148, 150, 151, 152, 156, 157, 162, 164, 167], "damag": [6, 65, 86], "bcn": [6, 16, 152, 167], "nd": [6, 16, 115, 127, 130, 167], "actual": [6, 29, 32, 36, 57, 62, 63, 71, 75, 82, 92, 97, 109, 113, 143, 151], "softwar": [6, 13, 26, 27, 31, 48, 52, 65, 86, 96, 97, 98, 153, 162], "With": [6, 24, 30, 47, 51, 53, 55, 62, 70, 78, 115, 124, 140, 142, 148], "opposit": [6, 16, 97], "side": [6, 16, 19, 20, 34, 55, 58, 68, 75, 97, 116, 118, 135, 136, 137, 140, 170], "everi": [6, 12, 30, 34, 36, 47, 64, 66, 67, 77, 88, 91, 93, 97, 98, 106, 115, 116, 118, 125, 126, 140, 144, 146, 148, 150, 152, 158, 162, 164, 167], "few": [6, 12, 13, 19, 24, 28, 30, 31, 39, 49, 52, 58, 70, 71, 89, 104, 108, 110, 115, 116, 130, 143, 160, 162, 167], "coarsest": [6, 19, 36, 55, 77, 119, 139, 148], "revis": [6, 125], "shock": [6, 17, 52, 104, 115], "accord": [6, 57, 97], "criteria": [6, 7, 24, 27, 34, 70, 106], "cluster": [6, 17, 115, 149, 150], "rigoutsi": 6, "bergerrigoutsis91": [6, 17], "nonoverlap": 6, "rectangl": [6, 7, 27, 32, 36, 70, 75, 115, 130, 164], "balanc": [6, 17, 78, 126, 141, 156, 157], "conflict": [6, 30, 62, 66, 71, 107, 111], "goal": 6, "possibl": [6, 13, 24, 28, 30, 32, 34, 36, 37, 47, 49, 51, 52, 55, 64, 65, 66, 75, 82, 86, 94, 97, 99, 100, 104, 109, 111, 115, 140, 142, 143, 148, 149, 162, 166, 167], "minim": [6, 62, 70, 97, 142, 149, 164], "overhead": [6, 76, 115, 161], "cutoff": [6, 150], "control": [6, 7, 25, 27, 34, 36, 44, 47, 58, 62, 64, 71, 77, 84, 87, 92, 94, 96, 97, 98, 99, 101, 115, 125, 130, 141, 151], "fraction": [6, 13, 32, 115, 148, 167, 170], "70": [6, 36, 55], "realli": [6, 72, 116, 167], "At": [6, 13, 29, 30, 36, 38, 39, 42, 70, 99, 104, 108, 110, 115, 130, 148], "present": [6, 26, 63, 72, 94, 97, 102, 103, 104, 109, 153, 154, 167, 170], "previous": [6, 24, 34, 70, 77, 84, 118, 123, 130, 144], "bilinear": [6, 34, 42, 47, 57, 72, 119, 120, 162], "doxygen": [6, 7, 27, 126], "flowchart": [6, 7, 27], "capabl": [7, 12, 19, 24, 34, 36, 47, 52, 56, 64, 70, 78, 89, 96, 119, 124, 125, 127, 128, 129, 130, 131, 135, 136, 164, 166], "block": [7, 32, 35, 42, 63, 75, 77, 78, 88, 97, 106, 109, 116, 167], "structur": [7, 10, 24, 34, 36, 37, 41, 59, 62, 66, 78, 103, 104, 125, 142, 147, 164], "input": [7, 14, 16, 22, 25, 27, 29, 32, 35, 37, 43, 48, 55, 63, 67, 70, 71, 77, 88, 91, 92, 94, 96, 102, 103, 104, 109, 113, 124, 127, 128, 129, 140, 150, 151, 152, 158, 159, 162, 164, 167], "indic": [7, 16, 19, 22, 24, 27, 31, 32, 34, 36, 41, 42, 44, 47, 48, 55, 57, 59, 62, 67, 71, 72, 80, 84, 94, 98, 99, 102, 104, 108, 111, 115, 116, 125, 130, 132, 140, 141, 148, 149, 150, 151, 152, 154, 162, 164, 167], "tool": [7, 8, 17, 24, 25, 30, 32, 34, 35, 36, 37, 38, 39, 42, 48, 49, 50, 51, 52, 55, 57, 60, 61, 62, 63, 71, 75, 80, 81, 82, 83, 85, 96, 111, 114, 120, 121, 125, 126, 130, 131, 151, 153, 162, 164, 166, 168], "matlab": [7, 24, 27, 38, 39, 80, 81, 82, 100, 110, 118, 127, 130, 131], "deprec": [7, 32, 48, 58, 62, 118, 123, 127, 135, 137, 162, 164], "debug": [7, 18, 44, 66, 77, 81, 98, 106, 111, 116, 135, 148, 150], "flag": [7, 12, 13, 18, 24, 27, 30, 31, 41, 43, 44, 48, 56, 62, 76, 89, 107, 109, 111, 118, 123, 128, 132, 150, 151], "sampl": [7, 8, 14, 17, 18, 27, 31, 36, 44, 47, 48, 51, 55, 64, 75, 111, 116, 135, 139, 142, 148, 149, 162, 164, 167], "ghost": [7, 16, 19, 76, 77, 94, 97, 104, 106, 125, 132, 136, 148, 150, 152, 161, 167, 170], "flagregion": [7, 27, 70, 115, 130, 132, 142, 149, 151], "rule": [7, 13, 27, 63, 70, 89], "convex": [7, 34], "slu": 7, "bounding_box": [7, 35], "mask_outsid": [7, 70], "write": [7, 30, 32, 35, 36, 37, 41, 42, 47, 48, 54, 57, 58, 68, 75, 77, 78, 81, 88, 91, 94, 95, 97, 98, 99, 103, 118, 125, 127, 150, 152, 158, 162, 164], "instanti": [7, 91, 99, 101, 104, 106, 136, 150, 152], "make_kml": 7, "simpl": [7, 31, 38, 39, 41, 48, 59, 72, 75, 89, 96, 101, 102, 104, 109, 114, 116, 164], "select": [7, 12, 13, 15, 16, 30, 34, 42, 70, 97, 98, 104, 112, 115, 119, 126, 130, 138, 145, 148, 151, 156, 157, 166], "continent": [7, 70], "shelf": [7, 70], "guid": [7, 13, 17, 20, 25, 26, 27, 48, 50, 56, 61, 96, 110, 115, 118, 126, 130, 135, 136, 137, 155], "adjoint": [7, 17, 27, 56, 115, 127, 128], "gaug": [7, 27, 34, 36, 48, 49, 63, 72, 94, 95, 106, 113, 119, 123, 124, 125, 126, 127, 130, 135, 139, 143, 147, 150], "extend": [8, 16, 24, 42, 63, 70, 71, 94, 127, 142, 144, 151, 162, 164, 170], "directli": [8, 18, 19, 21, 25, 34, 48, 52, 61, 71, 75, 82, 84, 88, 89, 92, 96, 106, 109, 111, 127, 135, 164, 168], "obviou": [8, 55], "elimin": [8, 24, 70, 89, 111, 127, 151], "gallery_classic_amrclaw": 8, "num_cel": [8, 24, 49, 94, 140, 148, 149, 150, 152], "refinement_ratios_i": [8, 149, 150], "sweep": [8, 140], "transvers": [8, 94, 125, 132, 140, 141, 148, 167, 170], "graph": 9, "understand": [9, 27, 38, 39, 52, 81, 96, 108, 115, 140], "filpatch": [9, 42, 125, 129, 132], "idea": [10, 26, 32, 70, 71, 78, 88, 108, 120, 164, 170], "overal": [10, 88], "who": [10, 12, 21, 24, 26, 34, 44, 52, 60, 118], "gori": 10, "monster": 10, "column": [10, 32, 34, 47, 49, 52, 64, 98, 102, 123, 142, 164], "markup": 11, "languag": [11, 81, 109], "restructur": [11, 58], "text": [11, 58, 59, 63, 77, 91, 97, 104, 123], "sphinx": [11, 25, 27, 59, 126], "covert": 11, "convert_readm": 11, "brows": [11, 26, 45, 55, 71, 153, 167], "insert": [11, 16, 75, 97, 118, 146], "script": [11, 21, 22, 30, 32, 34, 36, 43, 47, 55, 58, 66, 71, 78, 81, 86, 89, 93, 95, 96, 98, 99, 104, 109, 111, 116, 127, 131, 140, 147, 151, 152, 164], "invok": [11, 14, 19, 76, 144, 165], "minor": [11, 19, 55, 58, 98, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 130, 132, 134, 136, 137], "syntax": [11, 61, 146], "highlight": [11, 13], "header": [11, 32, 34, 36, 42, 47, 57, 70, 75, 77, 97, 103, 123, 125, 127, 158, 162, 164], "complex": [12, 19, 36, 41, 94], "archiv": [12, 23, 39, 55, 59, 116, 153, 160, 164, 166], "github": [12, 15, 19, 24, 25, 26, 27, 28, 31, 56, 58, 61, 62, 93, 101, 105, 112, 116, 118, 122, 124, 125, 126, 135, 138, 140, 141, 145, 156, 157, 165], "app": [12, 13, 20, 25, 28, 30, 31, 40, 45, 46, 75, 113, 114, 118, 122, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 141], "com": [12, 13, 19, 25, 26, 28, 30, 31, 51, 56, 58, 59, 61, 62, 97, 99, 101, 105, 122, 124, 125, 126, 135, 138, 141], "fvmbook": [12, 17, 45, 46], "galleri": [12, 17, 27, 34, 36, 38, 39, 40, 45, 48, 49, 59, 80, 81, 93, 96, 110, 116, 122, 126, 153, 160, 167], "anim": [12, 16, 36, 45, 49, 55, 123, 130, 131, 135, 153], "instal": [12, 13, 19, 20, 25, 27, 31, 38, 46, 55, 58, 59, 84, 86, 87, 90, 95, 97, 108, 110, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 146, 169], "collect": [12, 27, 28, 30, 32, 34, 75, 81, 88, 104, 153], "either": [12, 16, 19, 22, 32, 34, 36, 42, 48, 50, 55, 64, 66, 70, 71, 75, 77, 82, 84, 88, 94, 96, 97, 98, 104, 109, 111, 115, 116, 123, 124, 125, 127, 135, 140, 142, 144, 149, 151, 158, 162, 164, 167, 170], "clone": [12, 20, 25, 26, 45, 56, 58, 59, 62, 85, 99, 105, 114, 118, 135, 136, 137, 165], "git": [12, 13, 25, 26, 27, 28, 56, 59, 62, 96, 105, 116, 129], "navig": [12, 31, 58, 153], "green": [12, 18, 19, 63, 70, 75, 82, 116, 164], "button": [12, 13, 30, 55, 63, 126], "download": [12, 13, 30, 31, 32, 39, 40, 42, 48, 55, 59, 61, 62, 93, 99, 105, 127, 128, 138, 160, 164, 165, 166], "zip": [12, 55, 59], "illustr": [12, 27, 32, 34, 38, 46, 48, 49, 55, 70, 71, 75, 77, 114, 122, 123, 127, 129, 140, 142, 153, 154, 164], "variou": [12, 19, 22, 24, 32, 36, 41, 46, 52, 58, 71, 72, 75, 82, 84, 94, 108, 110, 111, 115, 125, 140, 147, 151, 154, 158], "visibl": [12, 13, 46, 55, 114, 153], "render": [12, 24, 34, 46, 55, 63, 168], "advantag": [12, 19, 36, 47, 64, 81, 97, 110, 116, 142], "independ": [12, 25, 32, 36, 37], "contact": [12, 93, 96, 105], "u": [12, 13, 16, 26, 31, 34, 36, 37, 51, 52, 59, 60, 62, 64, 86, 93, 96, 102, 105, 106, 107, 108, 113, 126, 140, 149, 152, 158, 166], "storm": [12, 17, 26, 27, 48, 123, 126, 127, 128, 129, 131, 132, 133], "surg": [12, 17, 26, 27, 48, 123, 126, 127, 128, 129, 132, 158], "empti": [12, 36, 47, 103, 106, 109, 111, 118, 148, 151, 158, 164], "gitmodul": 12, "pull": [12, 26, 28, 31, 58, 59, 61, 93, 101, 116, 122, 125, 126, 132, 135, 140], "request": [12, 26, 28, 32, 36, 37, 47, 58, 61, 77, 88, 93, 94, 98, 101, 103, 116, 118, 125, 127, 132, 140, 151, 158, 164], "init": [12, 27, 30, 42, 48, 56, 59, 61, 143, 151], "leav": [12, 13, 16, 47, 62, 149, 164], "off": [12, 13, 47, 52, 55, 63, 71, 84, 91, 98, 115, 135, 149, 164], "won": [12, 13, 70, 89, 164], "hurt": [12, 67], "maintain": [12, 30, 110, 127, 149, 162, 167], "flavor": [12, 23, 97], "demonstr": [12, 27, 93, 99], "agre": [12, 30, 42, 57, 140, 161, 164, 167], "seen": [12, 24, 34, 38, 39, 40, 52, 76, 101, 148, 153], "cloud": 13, "elast": [13, 75], "sign": [13, 26, 82, 132, 158], "account": [13, 26, 30, 59, 90, 99, 139], "750": 13, "free": [13, 55, 66, 75, 86, 90, 101, 105, 107], "micro": 13, "suffici": [13, 16, 18, 19, 22, 36, 47, 75, 76, 77, 113, 119, 135, 148, 151], "tier": 13, "inform": [13, 14, 24, 27, 34, 35, 37, 38, 39, 49, 50, 51, 52, 53, 54, 62, 67, 77, 82, 83, 84, 88, 89, 94, 96, 98, 99, 100, 102, 103, 109, 111, 124, 127, 128, 130, 136, 138, 139, 140, 143, 146, 148, 149, 151, 158, 161, 162, 165, 166, 167, 168], "uw": [13, 26], "escienc": 13, "aw": 13, "tutori": [13, 31, 59, 84, 87, 91, 96, 105, 111, 114], "gear": 13, "faq": [13, 27, 81], "price": 13, "charg": 13, "per": [13, 32, 37, 47, 49, 55, 63, 71, 76, 97, 149], "thereof": 13, "regardless": [13, 37, 42, 70, 115, 148], "cpu": [13, 56, 124, 127, 129, 161], "consol": [13, 98, 151], "tab": [13, 58, 138], "east": [13, 162], "cheaper": 13, "rate": 13, "menu": [13, 20, 27, 58, 63, 118, 126, 135, 136, 137, 138, 143, 166], "imag": [13, 38, 39, 42, 59, 63, 70, 116, 127, 142], "platform": [13, 55, 91, 99, 110, 116], "finish": [13, 82, 88], "load": [13, 63, 98, 100, 103, 109, 116, 164, 168], "databas": [13, 32, 75, 109, 113, 127, 162], "uwamath": 13, "bar": [13, 58, 158], "screen": [13, 30, 55, 63, 91, 98, 99, 124, 150, 152], "shapshot": 13, "machin": [13, 27, 76, 78, 116, 125, 146], "disk": [13, 47, 88, 97, 98, 116, 125], "ubuntu": 13, "linux": [13, 74, 85, 107, 116, 146], "popup": 13, "look": [13, 14, 24, 27, 30, 32, 42, 55, 58, 59, 63, 71, 82, 84, 89, 94, 99, 103, 104, 108, 109, 111, 116, 120, 127, 136, 142, 148, 149, 151, 161, 164, 165], "sort": [13, 42, 127, 147, 165], "larger": [13, 22, 34, 49, 55, 63, 75, 76, 77, 82, 94, 119, 125, 132, 149, 151, 162], "cost": [13, 104], "continu": [13, 24, 30, 32, 51, 53, 58, 86, 110, 118, 140, 148, 170], "eventu": [13, 48, 130], "don": [13, 29, 30, 58, 59, 82, 97, 98, 99, 105, 116, 150, 165], "pair": [13, 51, 97, 116, 164], "secur": 13, "quick": [13, 27, 39, 48, 50, 60, 85, 116, 160], "close": [13, 42, 55, 58, 63, 70, 71, 97, 115, 118, 130, 149, 158], "back": [13, 29, 31, 58, 59, 126], "statu": [13, 30, 54, 91, 108], "wait": 13, "until": [13, 34, 64, 70, 137, 144], "refresh": [13, 47], "bottom": [13, 15, 19, 32, 38, 39, 48, 52, 68, 70, 75, 88, 101, 102, 125, 126, 145, 156, 157], "scroll": 13, "down": [13, 32, 98, 124, 158, 162, 164], "dn": 13, "screenshot": [13, 55], "rjlkei": 13, "pem": 13, "abl": [13, 58, 111], "ssh": [13, 30], "keypair": 13, "50": [13, 17, 34, 51, 55, 72, 104, 120, 150], "19": [13, 17, 26, 133, 134, 138, 161], "75": [13, 17, 92, 108, 142], "229": 13, "amazonaw": 13, "gfortran": [13, 62, 76, 85, 87, 107, 118, 146, 165], "ipython": [13, 78, 82, 84, 89, 90, 96, 98, 105, 108, 111, 123, 124], "scipi": [13, 37, 89, 110, 137, 158, 164], "netcdf": [13, 37, 44, 48, 124, 127, 129, 131, 158, 164, 166], "apach": 13, "server": [13, 31, 42, 55, 58, 59, 70, 127, 162, 166], "apt": [13, 85], "fetch": [13, 51], "bring": [13, 55, 58, 71, 151], "master": [13, 15, 27, 31, 58, 59, 62, 101, 112, 118, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 141, 145, 156, 157], "make_lib": 13, "compil": [13, 18, 19, 27, 38, 39, 43, 50, 62, 67, 76, 78, 84, 85, 89, 96, 97, 101, 105, 109, 118, 119, 140, 141, 146], "bashrc": [13, 44, 107, 146], "Of": [13, 28, 75, 108, 113, 162], "cours": [13, 28, 34, 47, 50, 64, 75, 99, 100, 108, 110, 113, 151, 162], "tar": [13, 129, 138], "instruct": [13, 19, 20, 26, 27, 38, 39, 42, 55, 56, 58, 59, 88, 90, 96, 99, 105, 108, 111, 118, 126, 133, 135, 136, 137, 138, 139, 165], "window": [13, 32, 71, 84, 146], "respons": [13, 52, 88, 103], "pretti": 13, "slow": [13, 55, 98, 107], "_plot": [13, 38, 39, 47, 71, 84, 118, 147, 153], "local": [13, 17, 19, 22, 27, 30, 55, 58, 63, 66, 67, 71, 92, 94, 101, 106, 125, 127, 136, 144, 162, 164, 167], "sftp": 13, "much": [13, 19, 30, 34, 36, 44, 49, 55, 77, 78, 81, 85, 110, 115, 119, 123, 130, 135, 136, 142, 148, 151, 161, 164], "smaller": [13, 36, 55, 68, 78, 94, 98, 119, 135, 144, 148, 150, 151, 152, 164], "quicker": [13, 142], "browser": [13, 30, 31, 38, 39, 55, 58, 153], "explain": [13, 19, 34, 52, 70, 132, 148, 153], "webserv": 13, "inbound": 13, "port": [13, 31, 95, 96, 101, 149], "22": [13, 26, 149, 164], "80": [13, 17, 55, 99, 142], "drop": [13, 18, 19, 58, 85, 130, 132, 144, 148], "tcp": 13, "Then": [13, 16, 30, 31, 32, 36, 47, 58, 59, 60, 67, 70, 75, 76, 84, 88, 91, 99, 105, 106, 107, 111, 118, 140, 142, 164, 165], "someth": [13, 29, 30, 58, 66, 74, 81, 98, 103, 104, 111, 118, 162, 165, 167], "shot": 13, "ln": 13, "expos": [13, 78], "home": [13, 31, 32, 62, 146], "scp": 13, "TO": [13, 65, 86], "send": [13, 26, 101, 140], "remot": [13, 55, 59, 127, 164, 166], "rel": [13, 18, 19, 22, 32, 43, 50, 52, 55, 75, 76, 82, 96, 109, 111, 116, 118, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 143, 149, 151, 153, 162, 166], "end": [13, 31, 32, 34, 35, 36, 47, 51, 55, 59, 63, 91, 98, 102, 108, 110, 113, 115, 118, 124, 125, 127, 139, 141, 142, 150, 152, 158, 161], "retriev": [13, 37, 51, 84, 89, 104, 164, 166], "sit": 13, "idl": 13, "action": [13, 14, 89], "restart": [13, 27, 47, 77, 84, 96, 118, 124, 125, 126, 127, 129, 132, 136, 148, 150, 152], "later": [13, 36, 37, 42, 54, 55, 62, 84, 104, 139], "But": [13, 19, 34, 42, 55, 72, 82, 107, 120, 127, 144, 146], "futur": [13, 24, 27, 28, 38, 39, 42, 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113, 125, 144, 145], "dy": [15, 51, 57, 63, 64, 77, 89, 94, 98, 123, 127, 145, 162, 164], "capac": [15, 102, 145, 148, 149, 150, 152], "length": [15, 32, 37, 49, 52, 63, 75, 101, 106, 125, 132, 145, 148, 149, 150, 151, 167], "latter": [15, 18, 47, 70, 72, 101, 130, 142, 145, 148, 158, 167], "quantiti": [15, 18, 19, 34, 37, 63, 71, 72, 91, 95, 96, 102, 106, 141, 145, 151], "coordinate_system": [15, 18, 49, 64, 145, 151], "impos": [16, 89, 115, 156, 157, 170], "chapter": [16, 140, 148, 167], "choic": [16, 48, 81, 104, 148, 150, 151, 152, 167], "bc_lower": [16, 88, 101, 108, 148, 150, 152], "bc_upper": [16, 88, 101, 108, 148, 150, 152], "extrap": [16, 101, 108, 148, 150], "outflow": [16, 148, 150, 152], "move": [16, 34, 38, 39, 48, 58, 62, 64, 75, 101, 115, 119, 121, 126, 151, 154, 162, 163], "normal": [16, 19, 35, 36, 56, 58, 64, 82, 101, 111, 140, 141, 148, 149, 150, 151, 152], "fairli": [16, 52, 125], "good": [16, 19, 30, 52, 55, 65, 76, 86, 108, 113, 116, 125, 132, 140], "outgo": 16, 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[125, "changes-to-visclaw"], [126, "changes-to-visclaw"], [127, "changes-to-visclaw"], [128, "changes-to-visclaw"], [129, "changes-to-visclaw"], [130, "changes-to-visclaw"], [131, "changes-to-visclaw"], [132, "changes-to-visclaw"], [133, "changes-to-visclaw"], [134, "changes-to-visclaw"], [135, "changes-to-visclaw"], [136, "changes-to-visclaw"], [137, "changes-to-visclaw"]], "Changes to riemann": [[20, "changes-to-riemann"], [118, "changes-to-riemann"], [119, "changes-to-riemann"], [120, "changes-to-riemann"], [121, "changes-to-riemann"], [122, "changes-to-riemann"], [123, "changes-to-riemann"], [124, "changes-to-riemann"], [125, "changes-to-riemann"], [126, "changes-to-riemann"], [127, "changes-to-riemann"], [128, "changes-to-riemann"], [129, "changes-to-riemann"], [130, "changes-to-riemann"], [131, "changes-to-riemann"], [132, "changes-to-riemann"], [133, "changes-to-riemann"], [134, "changes-to-riemann"], [135, "changes-to-riemann"], [136, "changes-to-riemann"], [137, "changes-to-riemann"]], "Changes to amrclaw": [[20, "changes-to-amrclaw"], [118, "changes-to-amrclaw"], [119, "changes-to-amrclaw"], [120, "changes-to-amrclaw"], [121, "changes-to-amrclaw"], [122, "changes-to-amrclaw"], [123, "changes-to-amrclaw"], [124, "changes-to-amrclaw"], [125, "changes-to-amrclaw"], [126, "changes-to-amrclaw"], [127, "changes-to-amrclaw"], [128, "changes-to-amrclaw"], [129, "changes-to-amrclaw"], [130, "changes-to-amrclaw"], [131, "changes-to-amrclaw"], [132, "changes-to-amrclaw"], [133, "changes-to-amrclaw"], [134, "changes-to-amrclaw"], [135, "changes-to-amrclaw"], [136, "changes-to-amrclaw"], [137, "changes-to-amrclaw"]], "Changes to geoclaw": [[20, "changes-to-geoclaw"], [118, "changes-to-geoclaw"], [119, "changes-to-geoclaw"], [120, "changes-to-geoclaw"], [121, "changes-to-geoclaw"], [122, "changes-to-geoclaw"], [123, "changes-to-geoclaw"], [124, "changes-to-geoclaw"], [125, "changes-to-geoclaw"], [126, "changes-to-geoclaw"], [127, "changes-to-geoclaw"], [128, "changes-to-geoclaw"], [129, "changes-to-geoclaw"], [130, "changes-to-geoclaw"], [131, "changes-to-geoclaw"], [132, "changes-to-geoclaw"], [133, "changes-to-geoclaw"], [134, "changes-to-geoclaw"], [135, "changes-to-geoclaw"], [136, "changes-to-geoclaw"], [137, "changes-to-geoclaw"]], "Changes to PyClaw": [[20, "changes-to-pyclaw"], [117, "changes-to-pyclaw"], [118, "changes-to-pyclaw"], [119, "changes-to-pyclaw"], [120, "changes-to-pyclaw"], [121, "changes-to-pyclaw"], [122, "changes-to-pyclaw"], [123, "changes-to-pyclaw"], [124, "changes-to-pyclaw"], [125, "changes-to-pyclaw"], [126, "changes-to-pyclaw"], [127, "changes-to-pyclaw"], [128, "changes-to-pyclaw"], [129, "changes-to-pyclaw"], [130, "changes-to-pyclaw"], [131, "changes-to-pyclaw"], [132, "changes-to-pyclaw"], [133, "changes-to-pyclaw"], [134, "changes-to-pyclaw"], [135, "changes-to-pyclaw"], [136, "changes-to-pyclaw"], [137, "changes-to-pyclaw"]], "Other Clawpack Repositories": [[20, "other-clawpack-repositories"], [118, "other-clawpack-repositories"], [126, "other-clawpack-repositories"], [127, "other-clawpack-repositories"], [128, "other-clawpack-repositories"], [129, "other-clawpack-repositories"], [130, "other-clawpack-repositories"], [131, "other-clawpack-repositories"], [132, "other-clawpack-repositories"], [133, "other-clawpack-repositories"], [134, "other-clawpack-repositories"], [135, "other-clawpack-repositories"], [136, "other-clawpack-repositories"], [137, "other-clawpack-repositories"]], "Converting from Clawpack 4.3 to 4.6": [[21, "converting-from-clawpack-4-3-to-4-6"]], "Converting from Clawpack 4.6 to 5.0": [[22, "converting-from-clawpack-4-6-to-5-0"]], "Python conversion tool": [[22, "python-conversion-tool"]], "Clawpack 4.x links": [[23, "clawpack-4-x-links"]], "Changes in Clawpack 5.0": [[24, "changes-in-clawpack-5-0"]], "PyClaw in 5.0": [[24, "pyclaw-in-5-0"]], "Fortran package changes": [[24, "fortran-package-changes"]], "Changes to input parameters in setrun.py from 4.x to 5.0": [[24, "changes-to-input-parameters-in-setrun-py-from-4-x-to-5-0"]], "Changes to general parameters": [[24, "changes-to-general-parameters"]], "Changes to AMR parameters": [[24, "changes-to-amr-parameters"]], "Changes to GeoClaw parameters": [[24, "changes-to-geoclaw-parameters"]], "Changes to plotting routines": [[24, "changes-to-plotting-routines"]], "Clawpack components": [[25, "clawpack-components"]], "Other repositories": [[25, "other-repositories"]], "Clawpack Community": [[26, "clawpack-community"]], "User Workshops, Clinics, and Tutorials": [[26, "user-workshops-clinics-and-tutorials"]], "Available for streaming": [[26, "available-for-streaming"]], "Upcoming": [[26, "upcoming"], [26, "id1"]], "Recent": [[26, "recent"]], "Developer Workshops and Sprint Sessions": [[26, "developer-workshops-and-sprint-sessions"]], "Previous": [[26, "previous"]], "Other Clawpack events": [[26, "other-clawpack-events"]], "Contents": [[27, "id1"], [30, "contents"], [42, "contents"], [70, "contents"], [82, "contents"], [88, "contents"], [98, "contents"], [104, "contents"], [116, "contents"], [142, "contents"]], "Full Table of Contents": [[27, "full-table-of-contents"]], "Overview and Getting Started": [[27, "overview-and-getting-started"]], "Examples and Applications": [[27, "examples-and-applications"]], "Classic, AMRClaw, and GeoClaw": [[27, "classic-amrclaw-and-geoclaw"]], "Using the Fortran codes": [[27, "using-the-fortran-codes"]], "AMRClaw: adaptive mesh refinement": [[27, "amrclaw-adaptive-mesh-refinement"]], "GeoClaw: geophysical flows": [[27, "geoclaw-geophysical-flows"]], "PyClaw": [[27, "pyclaw"], [38, "pyclaw"], [96, "pyclaw"], [116, "pyclaw"], [160, "pyclaw"]], "Riemann": [[27, "riemann"]], "VisClaw: Plotting and Visualization Tools": [[27, "visclaw-plotting-and-visualization-tools"]], "Migrating applications from older versions of Clawpack": [[27, "migrating-applications-from-older-versions-of-clawpack"]], "Developers\u2019 resources": [[27, "developers-resources"]], "References": [[27, "references"], [56, "references"]], "Contributing examples and applications": [[28, "contributing-examples-and-applications"]], "current_data": [[29, "current-data"]], "Attributes of current_data:": [[29, "attributes-of-current-data"]], "Developers\u2019 Guide": [[30, "developers-guide"]], "Guidelines for contributing": [[30, "guidelines-for-contributing"]], "Reporting and fixing bugs": [[30, "reporting-and-fixing-bugs"]], "Developer communication": [[30, "developer-communication"]], "Installation instructions for developers": [[30, "installation-instructions-for-developers"]], "Cloning the most recent code from Github": [[30, "cloning-the-most-recent-code-from-github"]], "Checking out the master branch on each repository": [[30, "checking-out-the-master-branch-on-each-repository"]], "Updating to the latest master branch": [[30, "updating-to-the-latest-master-branch"]], "Never commit to master": [[30, "never-commit-to-master"]], "Adding your fork as a remote": [[30, "adding-your-fork-as-a-remote"]], "Modifying code": [[30, "modifying-code"]], "Issuing a pull request": [[30, "issuing-a-pull-request"]], "Testing a pull request": [[30, "testing-a-pull-request"]], "Top-level pull requests": [[30, "top-level-pull-requests"]], "Git workflow": [[30, "git-workflow"]], "Catching errors with Pyflakes and Pylint": [[30, "catching-errors-with-pyflakes-and-pylint"]], "Checking test coverage": [[30, "checking-test-coverage"]], "Trouble-Shooting Tips": [[30, "trouble-shooting-tips"]], "Docker for Clawpack": [[31, "docker-for-clawpack"]], "Using Version 5.9.0 or above": [[31, "using-version-5-9-0-or-above"]], "Getting started": [[31, "getting-started"]], "Stopping a container": [[31, "stopping-a-container"]], "Restarting a container": [[31, "restarting-a-container"]], "Running Jupyter notebooks": [[31, "running-jupyter-notebooks"]], "Moving files between the docker container and the host machine": [[31, "moving-files-between-the-docker-container-and-the-host-machine"]], "Some other useful docker commands": [[31, "some-other-useful-docker-commands"]], "Creating your own docker image": [[31, "creating-your-own-docker-image"]], "Dockerfiles for binder": [[31, "dockerfiles-for-binder"]], "dtopotools module for moving topography": [[32, "dtopotools-module-for-moving-topography"]], "Documentation auto-generated from the module docstrings": [[32, "module-clawpack.geoclaw.dtopotools"], [35, "module-clawpack.geoclaw.fgmax_tools"], [37, "module-clawpack.geoclaw.fgout_tools"], [51, "module-clawpack.geoclaw.util"], [63, "module-clawpack.geoclaw.kmltools"], [164, "module-clawpack.geoclaw.topotools"]], "Fortran 77 vs. Fortran 90 files": [[33, "fortran-77-vs-fortran-90-files"]], "Fixed grid monitoring (fgmax)": [[34, "fixed-grid-monitoring-fgmax"]], "Input file specification": [[34, "input-file-specification"], [36, "input-file-specification"]], "Different point styles": [[34, "different-point-styles"]], "Other attributes": [[34, "other-attributes"]], "Values to monitor": [[34, "values-to-monitor"]], "Choice of interpolation procedure": [[34, "choice-of-interpolation-procedure"], [36, "choice-of-interpolation-procedure"]], "A simple example": [[34, "a-simple-example"], [36, "a-simple-example"]], "Processing and plotting fgmax output": [[34, "processing-and-plotting-fgmax-output"]], "Format of the output files": [[34, "format-of-the-output-files"]], "fgmax examples": [[34, "fgmax-examples"]], "fgmax_tools module for working with fgmax grids": [[35, "fgmax-tools-module-for-working-with-fgmax-grids"]], "Fixed grid output (fgout)": [[36, "fixed-grid-output-fgout"]], "Format of fgout output": [[36, "format-of-fgout-output"]], "Using setplot.py to produce plots": [[36, "using-setplot-py-to-produce-plots"]], "Reading and plotting fgout arrays directly": [[36, "reading-and-plotting-fgout-arrays-directly"]], "fgout grid registration": [[36, "fgout-grid-registration"]], "fgout examples": [[36, "fgout-examples"]], "fgout_tools module for working with fgout grids": [[37, "fgout-tools-module-for-working-with-fgout-grids"]], "Running an example": [[38, "running-an-example"], [39, "running-an-example"], [40, "running-an-example"]], "Classic": [[38, "classic"], [39, "classic"], [160, "classic"]], "Testing your Fortran installation and running an example": [[39, "testing-your-fortran-installation-and-running-an-example"]], "More examples": [[39, "more-examples"]], "Testing a PyClaw installation and running an example": [[40, "testing-a-pyclaw-installation-and-running-an-example"]], "From the Jupyter notebook": [[40, "from-the-jupyter-notebook"]], "From the IPython interpreter": [[40, "from-the-ipython-interpreter"]], "From the command line": [[40, "from-the-command-line"], [93, "from-the-command-line"]], "Specifying flagregions for adaptive refinement": [[41, "specifying-flagregions-for-adaptive-refinement"]], "Using ruled rectangles as flagregions": [[41, "using-ruled-rectangles-as-flagregions"]], "Force Cells to be Dry Initially": [[42, "force-cells-to-be-dry-initially"]], "Sample topography from a 1/3 arcsecond DEM": [[42, "sample-topography-from-a-1-3-arcsecond-dem"], [70, "sample-topography-from-a-1-3-arcsecond-dem"]], "Creating the force_dry_init array": [[42, "creating-the-force-dry-init-array"]], "Create file to read into GeoClaw": [[42, "create-file-to-read-into-geoclaw"]], "Usage in GeoClaw Fortran code": [[42, "usage-in-geoclaw-fortran-code"]], "Internal GeoClaw modifications": [[42, "internal-geoclaw-modifications"]], "Fortran version": [[43, "fortran-version"]], "Makefiles": [[43, "makefiles"]], "More tips": [[43, "more-tips"]], "Fortran Compilers": [[44, "fortran-compilers"]], "FC environment variable": [[44, "fc-environment-variable"]], "FFLAGS environment variable": [[44, "fflags-environment-variable"]], "LFLAGS environment variable": [[44, "lflags-environment-variable"]], "Pre-Processor and the PPFLAGS environment variable": [[44, "pre-processor-and-the-ppflags-environment-variable"]], "gfortran compiler": [[44, "gfortran-compiler"]], "Intel fortran compiler": [[44, "intel-fortran-compiler"]], "Examples from the book FVMHP": [[45, "examples-from-the-book-fvmhp"]], "Available examples": [[45, "available-examples"]], "YouTube Videos": [[45, "youtube-videos"]], "Clawpack Gallery": [[46, "clawpack-gallery"]], "Gauges": [[47, "gauges"]], "Gauge parameters in setrun": [[47, "gauge-parameters-in-setrun"]], "Plotting tools": [[47, "plotting-tools"]], "Plotting gauge locations": [[47, "plotting-gauge-locations"]], "GeoClaw Description and Detailed Contents": [[48, "geoclaw-description-and-detailed-contents"]], "GeoClaw in One Space Dimension": [[49, "geoclaw-in-one-space-dimension"]], "Coordinate systems": [[49, "coordinate-systems"]], "Uniform and mapped grids": [[49, "uniform-and-mapped-grids"]], "Topograpy data": [[49, "topograpy-data"]], "Moving topograpy (dtopo) data": [[49, "moving-topograpy-dtopo-data"]], "Getting started with GeoClaw": [[50, "getting-started-with-geoclaw"]], "Running a GeoClaw code": [[50, "running-a-geoclaw-code"]], "Topography": [[50, "topography"]], "Plotting GeoClaw results": [[50, "plotting-geoclaw-results"]], "Setting up a new example": [[50, "setting-up-a-new-example"]], "geoclaw.util module of utility functions": [[51, "geoclaw-util-module-of-utility-functions"]], "Cautionary Hints on using GeoClaw": [[52, "cautionary-hints-on-using-geoclaw"]], "Tsunami hazard modeling": [[52, "tsunami-hazard-modeling"]], "GeoClaw plotting tools": [[53, "geoclaw-plotting-tools"]], "Plotting water depth or surface elevation": [[53, "plotting-water-depth-or-surface-elevation"]], "Tips on latitude-longitude coordinate axes": [[53, "tips-on-latitude-longitude-coordinate-axes"]], "Keeping track of repository versions with Git": [[54, "keeping-track-of-repository-versions-with-git"]], "Visualizing GeoClaw results in Google Earth": [[55, "visualizing-geoclaw-results-in-google-earth"]], "Basic requirements": [[55, "basic-requirements"]], "Optional GDAL library": [[55, "optional-gdal-library"]], "An example : The Chile 2010 tsunami event": [[55, "an-example-the-chile-2010-tsunami-event"]], "Plotting attributes needed for Google Earth": [[55, "plotting-attributes-needed-for-google-earth"]], "plotdata attributes": [[55, "plotdata-attributes"]], "plotfigure attributes": [[55, "plotfigure-attributes"]], "Creating the figures": [[55, "creating-the-figures"]], "plotaxes attributes": [[55, "plotaxes-attributes"]], "plotitem attributes": [[55, "plotitem-attributes"]], "Adding a colorbar overlay": [[55, "adding-a-colorbar-overlay"]], "Gauge plots": [[55, "gauge-plots"]], "Additional plotdata attributes": [[55, "additional-plotdata-attributes"]], "Plotting tips": [[55, "plotting-tips"]], "KML and KMZ files": [[55, "kml-and-kmz-files"]], "Tiling images for faster loading": [[55, "tiling-images-for-faster-loading"]], "Removing aliasing artifacts": [[55, "removing-aliasing-artifacts"]], "Creating multiple figures at different resolutions": [[55, "creating-multiple-figures-at-different-resolutions"]], "Mapping topography data to latitude/longitude coordinates": [[55, "mapping-topography-data-to-latitude-longitude-coordinates"]], "Publishing your results": [[55, "id1"]], "Using the GPU version of Clawpack": [[56, "using-the-gpu-version-of-clawpack"]], "Grid registration": [[57, "grid-registration"]], "NetCDF files": [[57, "netcdf-files"]], "Guide for updating this documentation": [[58, "guide-for-updating-this-documentation"]], "Git branches and tags": [[58, "git-branches-and-tags"]], "Configuration and style files": [[58, "configuration-and-style-files"]], "Updating the docs for a new release": [[58, "updating-the-docs-for-a-new-release"]], "To generate docs including previous versions": [[58, "to-generate-docs-including-previous-versions"]], "Updating for a new major version": [[58, "updating-for-a-new-major-version"]], "Updating the gallery": [[58, "updating-the-gallery"]], "Updating the webpages": [[58, "updating-the-webpages"]], "Extra files for webpages not built by Sphinx": [[58, "extra-files-for-webpages-not-built-by-sphinx"]], "Pages from other clawpack repositories": [[58, "pages-from-other-clawpack-repositories"]], "Guide for doing a Clawpack release": [[59, "guide-for-doing-a-clawpack-release"]], "Preparation": [[59, "preparation"]], "Version numbers": [[59, "version-numbers"]], "Release candidates": [[59, "release-candidates"]], "Create a tar file and a Github release": [[59, "create-a-tar-file-and-a-github-release"]], "Final release": [[59, "final-release"]], "Pypi": [[59, "pypi"]], "Zenodo": [[59, "zenodo"]], "Open Science Framework (OSF)": [[59, "open-science-framework-osf"]], "Updating the documentation": [[59, "updating-the-documentation"]], "Updating the apps repository": [[59, "updating-the-apps-repository"]], "Updating the Dockerfile": [[59, "updating-the-dockerfile"]], "Installing Clawpack": [[60, "installing-clawpack"]], "Next steps:": [[60, "next-steps"], [61, "next-steps"], [62, "next-steps"]], "Options for installing Clawpack Fortran codes": [[61, "options-for-installing-clawpack-fortran-codes"]], "tar file": [[61, "tar-file"]], "git clone": [[61, "git-clone"]], "pip install instructions": [[62, "pip-install-instructions"]], "Quick Installation of PyClaw with pip": [[62, "quick-installation-of-pyclaw-with-pip"]], "Quick Installation of all packages with pip": [[62, "quick-installation-of-all-packages-with-pip"]], "Using pip to install a different version": [[62, "using-pip-to-install-a-different-version"]], "Experimenting with code in the examples directories": [[62, "experimenting-with-code-in-the-examples-directories"]], "Troubleshooting pip install": [[62, "troubleshooting-pip-install"]], "kmltools module of utility functions": [[63, "kmltools-module-of-utility-functions"]], "Lagrangian gauges for particle tracking": [[64, "lagrangian-gauges-for-particle-tracking"]], "Specifying Lagrangian Gauges": [[64, "specifying-lagrangian-gauges"]], "Visclaw tools for plotting": [[64, "visclaw-tools-for-plotting"]], "An alternative using fgout grids": [[64, "an-alternative-using-fgout-grids"]], "Clawpack Makefiles": [[66, "clawpack-makefiles"]], "Applications directory Makefiles": [[66, "applications-directory-makefiles"]], "output": [[66, "output"]], "plots": [[66, "plots"]], "Variables": [[66, "variables"]], "Compiler flags": [[66, "compiler-flags"]], "Duplicate Base Source Name": [[66, "duplicate-base-source-name"]], "Library routines in Makefiles": [[67, "library-routines-in-makefiles"]], "Replacing files with the same name as library files": [[67, "replacing-files-with-the-same-name-as-library-files"]], "Using a modified library routine with a different name": [[67, "using-a-modified-library-routine-with-a-different-name"]], "Manning friction term": [[68, "manning-friction-term"]], "The mapc2p function": [[69, "the-mapc2p-function"]], "Marching Front algorithm": [[70, "marching-front-algorithm"]], "Function arguments": [[70, "function-arguments"]], "output array": [[70, "output-array"]], "creating a masked array": [[70, "creating-a-masked-array"]], "topofile mask for initializing dry points": [[70, "topofile-mask-for-initializing-dry-points"]], "fgmax points": [[70, "fgmax-points"]], "flag regions": [[70, "flag-regions"]], "The mask argument": [[70, "the-mask-argument"]], "The previous_pts_chosen argument": [[70, "the-previous-pts-chosen-argument"]], "Finding all points below a given elevation": [[70, "finding-all-points-below-a-given-elevation"]], "Create a buffer zone along shore": [[70, "create-a-buffer-zone-along-shore"]], "Choose points only near shore": [[70, "choose-points-only-near-shore"]], "Write out the masked array indicating fgmax points": [[70, "write-out-the-masked-array-indicating-fgmax-points"]], "Creating an AMR flag region": [[70, "creating-an-amr-flag-region"]], "Determining dry areas below MHW": [[70, "determining-dry-areas-below-mhw"]], "Plotting using Matlab": [[71, "plotting-using-matlab"]], "The Matlab search path": [[71, "the-matlab-search-path"]], "Creating output files": [[71, "creating-output-files"]], "The plotclaw command": [[71, "the-plotclaw-command"]], "The setplot file": [[71, "the-setplot-file"]], "The afterframe file": [[71, "the-afterframe-file"]], "Getting help": [[71, "getting-help"]], "Trouble shooting": [[71, "trouble-shooting"]], "Output files not found": [[71, "output-files-not-found"]], "MaxFrames not set": [[71, "maxframes-not-set"]], "Switching examples": [[71, "switching-examples"]], "Matlab Gallery": [[71, "matlab-gallery"]], "Nearshore interpolation": [[72, "nearshore-interpolation"]], "Using NetCDF output": [[73, "using-netcdf-output"]], "Creating a new application directory": [[74, "creating-a-new-application-directory"]], "Copying an existing example": [[74, "copying-an-existing-example"]], "Earthquake sources: Fault slip and the Okada model": [[75, "earthquake-sources-fault-slip-and-the-okada-model"]], "Fault slip on rectangular subfaults": [[75, "fault-slip-on-rectangular-subfaults"]], "Okada model": [[75, "okada-model"]], "Kinematic rupture": [[75, "kinematic-rupture"]], "Fault slip on triangular subfaults": [[75, "fault-slip-on-triangular-subfaults"]], "Using OpenMP": [[76, "using-openmp"]], "Using OpenMP with AMR": [[76, "using-openmp-with-amr"]], "Fixed grid output in GeoClaw": [[76, "fixed-grid-output-in-geoclaw"]], "Output data sytles and formats": [[77, "output-data-sytles-and-formats"]], "Output style": [[77, "output-style"]], "Output data formats": [[77, "output-data-formats"]], "ASCII output data format": [[77, "ascii-output-data-format"]], "fort.t0002": [[77, "fort-t0002"]], "fort.q0002": [[77, "fort-q0002"]], "Raw binary output data formats": [[77, "raw-binary-output-data-formats"]], "NetCDF output data format": [[77, "netcdf-output-data-format"]], "Output of aux arrays": [[77, "output-of-aux-arrays"]], "Which Clawpack solver should I use?": [[78, "which-clawpack-solver-should-i-use"]], "Installation and user interface": [[78, "installation-and-user-interface"]], "Algorithmic differences": [[78, "algorithmic-differences"]], "Parallel computing": [[78, "parallel-computing"]], "Clawpack Community Photos": [[79, "clawpack-community-photos"]], "2016 Developers\u2019 workshop at University of Washington": [[79, "id1"]], "2015 Developers\u2019 workshop at University of Utah": [[79, "id2"]], "2014 HPC3 workshop at KAUST": [[79, "id3"]], "2013 Claw-Dev workshop at UW": [[79, "id4"]], "2012 HPC3 workshop at KAUST": [[79, "id6"]], "2011 coding sprints at UW": [[79, "coding-sprints-at-uw"]], "2010 GeoClaw hacking UW": [[79, "geoclaw-hacking-uw"]], "Plotting examples": [[80, "plotting-examples"]], "Plotting with Visclaw": [[81, "plotting-with-visclaw"]], "Plotting as post-processing": [[81, "plotting-as-post-processing"]], "Plotting on the fly": [[81, "plotting-on-the-fly"]], "Plotting hints and FAQ": [[82, "plotting-hints-and-faq"]], "What\u2019s the difference between make .plots and make plots ?": [[82, "what-s-the-difference-between-make-plots-and-make-plots"]], "How to plot a something other than a component of q?": [[82, "how-to-plot-a-something-other-than-a-component-of-q"]], "How to add another curve to a plot, e.g. the true solution?": [[82, "how-to-add-another-curve-to-a-plot-e-g-the-true-solution"]], "How to change the title in a plot?": [[82, "how-to-change-the-title-in-a-plot"]], "How to specify outdir, the directory to find fort.* files for plotting?": [[82, "how-to-specify-outdir-the-directory-to-find-fort-files-for-plotting"]], "How to specify a different outdir for some plot item?": [[82, "how-to-specify-a-different-outdir-for-some-plot-item"]], "How to set plot parameters that are not provided as attributes of ClawPlotItem?": [[82, "how-to-set-plot-parameters-that-are-not-provided-as-attributes-of-clawplotitem"]], "How to change the size or background color of a figure?": [[82, "how-to-change-the-size-or-background-color-of-a-figure"]], "Specifying colormaps for pcolor or contourf plots": [[82, "specifying-colormaps-for-pcolor-or-contourf-plots"]], "How to debug setplot.py?": [[82, "how-to-debug-setplot-py"]], "Plotting routines for GeoClaw": [[83, "plotting-routines-for-geoclaw"]], "Plotting options in Python": [[84, "plotting-options-in-python"]], "Producing html plots from the command line": [[84, "producing-html-plots-from-the-command-line"]], "Producing a latex file with plots from the command line": [[84, "producing-a-latex-file-with-plots-from-the-command-line"]], "Setting plot parameters with a setplot function": [[84, "setting-plot-parameters-with-a-setplot-function"]], "Interactive plotting with Iplotclaw": [[84, "interactive-plotting-with-iplotclaw"]], "Access to current_data": [[84, "access-to-current-data"]], "printframes": [[84, "printframes"]], "Specifying what and how to plot": [[84, "specifying-what-and-how-to-plot"]], "Installation Prerequisites": [[85, "installation-prerequisites"]], "Operating system": [[85, "operating-system"]], "Fortran": [[85, "fortran"]], "Python": [[85, "python"]], "pip": [[85, "pip"]], "Git": [[85, "git"]], "About PyClaw": [[86, "about-pyclaw"]], "Contributors": [[86, "contributors"]], "PyClaw Basics": [[87, "pyclaw-basics"]], "Understanding Pyclaw Classes": [[88, "understanding-pyclaw-classes"]], "Flow of a Pyclaw Simulation": [[88, "flow-of-a-pyclaw-simulation"]], "Creation of a Pyclaw Solution": [[88, "creation-of-a-pyclaw-solution"]], "Creation of a Pyclaw Solver": [[88, "creation-of-a-pyclaw-solver"]], "Creating and Running a Simulation with Controller": [[88, "creating-and-running-a-simulation-with-controller"]], "Restarting a simulation": [[88, "restarting-a-simulation"]], "Outputting aux values": [[88, "outputting-aux-values"]], "Outputting derived quantities": [[88, "outputting-derived-quantities"], [98, "outputting-derived-quantities"]], "Porting a problem from Clawpack 4.6.x to PyClaw": [[89, "porting-a-problem-from-clawpack-4-6-x-to-pyclaw"]], "Running PyClaw in the cloud": [[90, "running-pyclaw-in-the-cloud"]], "Sage Math Cloud": [[90, "sage-math-cloud"]], "Pyclaw Controller Class": [[91, "pyclaw-controller-class"]], "pyclaw.controller.Controller": [[91, "pyclaw-controller-controller"]], "Pyclaw Limiters": [[92, "pyclaw-limiters"]], "clawpack.pyclaw.limiters.tvd": [[92, "module-clawpack.pyclaw.limiters.tvd"]], "CFL Independent Limiters": [[92, "cfl-independent-limiters"]], "CFL Dependent Limiters": [[92, "cfl-dependent-limiters"]], "Working with PyClaw\u2019s built-in examples": [[93, "working-with-pyclaw-s-built-in-examples"]], "Running and plotting examples": [[93, "running-and-plotting-examples"]], "Interactively in IPython": [[93, "interactively-in-ipython"]], "Built-in examples": [[93, "built-in-examples"]], "Adding new examples": [[93, "adding-new-examples"]], "PyClaw Geometry": [[94, "pyclaw-geometry"]], "Serial Geometry Objects": [[94, "serial-geometry-objects"]], "pyclaw.geometry.Domain": [[94, "pyclaw-geometry-domain"]], "pyclaw.geometry.Patch": [[94, "pyclaw-geometry-patch"]], "pyclaw.geometry.Grid": [[94, "pyclaw-geometry-grid"]], "pyclaw.geometry.Dimension": [[94, "pyclaw-geometry-dimension"]], "Parallel Geometry Objects": [[94, "parallel-geometry-objects"]], "petclaw.geometry.Domain": [[94, "petclaw-geometry-domain"]], "petclaw.geometry.Patch": [[94, "petclaw-geometry-patch"]], "Going Further": [[95, "going-further"]], "PyClaw installation": [[96, "pyclaw-installation"]], "Features": [[96, "features"]], "PyClaw Documentation": [[96, "pyclaw-documentation"]], "PyClaw Modules reference documentation": [[96, "pyclaw-modules-reference-documentation"]], "Riemann Solvers reference documentation": [[96, "riemann-solvers-reference-documentation"]], "Indices and tables": [[96, "indices-and-tables"]], "Citing PyClaw": [[96, "citing-pyclaw"]], "Pyclaw Input/Output Package": [[97, "pyclaw-input-output-package"]], "pyclaw.fileio.ascii": [[97, "module-clawpack.pyclaw.fileio.ascii"]], "pyclaw.fileio.binary": [[97, "module-clawpack.pyclaw.fileio.binary"]], "pyclaw.fileio.hdf5": [[97, "module-clawpack.pyclaw.fileio.hdf5"]], "pyclaw.fileio.netcdf": [[97, "module-clawpack.pyclaw.fileio.netcdf"]], "PyClaw output": [[98, "pyclaw-output"]], "Output frames": [[98, "output-frames"]], "When output is saved/written": [[98, "when-output-is-saved-written"]], "Where and how output is written": [[98, "where-and-how-output-is-written"]], "What output is written": [[98, "what-output-is-written"]], "Outputting functionals": [[98, "outputting-functionals"]], "Using gauges": [[98, "using-gauges"]], "Logging": [[98, "logging"]], "Running in parallel": [[99, "running-in-parallel"]], "Installing PETSc": [[99, "installing-petsc"]], "Testing your installation": [[99, "testing-your-installation"], [160, "testing-your-installation"]], "Running and plotting an example": [[99, "running-and-plotting-an-example"]], "Tips for making your application run correctly in parallel": [[99, "tips-for-making-your-application-run-correctly-in-parallel"]], "Passing options to PETSc": [[99, "passing-options-to-petsc"]], "Plotting PyClaw results": [[100, "plotting-pyclaw-results"]], "Basics": [[100, "basics"]], "Plotting result from parallel runs": [[100, "plotting-result-from-parallel-runs"]], "Setting up your own problem": [[101, "setting-up-your-own-problem"]], "Writing the initialization script": [[101, "writing-the-initialization-script"]], "Setting initial conditions": [[101, "setting-initial-conditions"]], "Setting auxiliary variables": [[101, "setting-auxiliary-variables"]], "Setting boundary conditions": [[101, "setting-boundary-conditions"]], "Setting solver options": [[101, "setting-solver-options"]], "Using your own Riemann solver": [[101, "using-your-own-riemann-solver"]], "Adding source terms": [[101, "adding-source-terms"]], "Setting up the Makefile": [[101, "setting-up-the-makefile"]], "Riemann Solver Package": [[102, "riemann-solver-package"]], "Acoustics": [[102, "acoustics"]], "Advection": [[102, "advection"]], "Burgers Equation": [[102, "burgers-equation"]], "Euler Equations": [[102, "euler-equations"]], "Shallow Water Equations": [[102, "shallow-water-equations"]], "PyClaw Solutions": [[103, "pyclaw-solutions"]], "pyclaw.solution.Solution": [[103, "pyclaw-solution-solution"]], "Using PyClaw\u2019s solvers: Classic and SharpClaw": [[104, "using-pyclaw-s-solvers-classic-and-sharpclaw"]], "SharpClaw Solvers": [[104, "sharpclaw-solvers"]], "pyclaw.sharpclaw": [[104, "pyclaw-sharpclaw"]], "Pyclaw Classic Clawpack Solvers": [[104, "pyclaw-classic-clawpack-solvers"]], "pyclaw.classic.solver": [[104, "pyclaw-classic-solver"]], "Change to Custom BC Function Signatures": [[104, "change-to-custom-bc-function-signatures"]], "Installing PyClaw": [[105, "installing-pyclaw"]], "Dependencies: Python, gfortran, numpy, and matplotlib": [[105, "dependencies-python-gfortran-numpy-and-matplotlib"]], "Obtaining Python, numpy, and matplotlib": [[105, "obtaining-python-numpy-and-matplotlib"]], "Clawpack": [[105, "clawpack"]], "Testing your installation with nose": [[105, "testing-your-installation-with-nose"]], "Next steps": [[105, "next-steps"]], "PyClaw State": [[106, "pyclaw-state"]], "Serial pyclaw.state.State": [[106, "serial-pyclaw-state-state"]], "Parallel petclaw.state.State": [[106, "parallel-petclaw-state-state"]], "Troubleshooting": [[107, "troubleshooting"], [165, "troubleshooting"]], "Compilation errors": [[107, "compilation-errors"]], "Use Fortran-ordered arrays": [[107, "use-fortran-ordered-arrays"]], "Installation": [[107, "installation"]], "PyClaw tutorial: Solve the acoustics equations": [[108, "pyclaw-tutorial-solve-the-acoustics-equations"]], "The Solver": [[108, "the-solver"]], "The domain": [[108, "the-domain"]], "Initial condition": [[108, "initial-condition"]], "Problem-specific parameters": [[108, "problem-specific-parameters"]], "The controller": [[108, "the-controller"]], "Pyclaw Utility Module": [[109, "pyclaw-utility-module"]], "pyclaw.util": [[109, "module-clawpack.pyclaw.util"]], "Python Hints": [[110, "python-hints"]], "Dropping support for Python 2.7": [[110, "dropping-support-for-python-2-7"]], "References and tutorials": [[110, "references-and-tutorials"]], "Notebooks": [[110, "notebooks"]], "Python path": [[111, "python-path"]], "whichclaw.py": [[111, "whichclaw-py"]], "Which version was imported?": [[111, "which-version-was-imported"]], "sys.path": [[111, "sys-path"]], "easy-install.pth": [[111, "easy-install-pth"]], "PYTHONPATH": [[111, "pythonpath"], [146, "pythonpath"]], "qinit default routines": [[112, "qinit-default-routines"]], "qinit routine in GeoClaw": [[112, "qinit-routine-in-geoclaw"]], "Quick start guide for storm surge modeling": [[113, "quick-start-guide-for-storm-surge-modeling"]], "Quick start guide for tsunami modeling": [[114, "quick-start-guide-for-tsunami-modeling"]], "AMR refinement criteria": [[115, "amr-refinement-criteria"]], "Flagging criteria": [[115, "flagging-criteria"]], "flag2refine": [[115, "flag2refine"]], "Richardson extrapolation": [[115, "richardson-extrapolation"]], "Specifying AMR regions": [[115, "specifying-amr-regions"]], "Implementation": [[115, "implementation"]], "Flagging criteria in GeoClaw": [[115, "flagging-criteria-in-geoclaw"]], "Regression testing": [[116, "regression-testing"]], "Running the tests": [[116, "running-the-tests"], [116, "id2"]], "Fortran codes": [[116, "fortran-codes"]], "Travis continuous integration": [[116, "travis-continuous-integration"]], "Diff tools for checking test output": [[116, "diff-tools-for-checking-test-output"]], "chardiff tool for line-by-line comparison of output files": [[116, "chardiff-tool-for-line-by-line-comparison-of-output-files"]], "imagediff tool for pixel comparison of plots": [[116, "imagediff-tool-for-pixel-comparison-of-plots"]], "Running and writing tests in PyClaw": [[116, "running-and-writing-tests-in-pyclaw"]], "Running serial tests simultaneously": [[116, "running-serial-tests-simultaneously"]], "Running a specific test": [[116, "running-a-specific-test"]], "Doctests": [[116, "doctests"]], "Writing New Tests": [[116, "writing-new-tests"]], "v5.0.0 release notes": [[117, "v5-0-0-release-notes"]], "Changes to classic, riemann, amrclaw, geoclaw, visclaw": [[117, "changes-to-classic-riemann-amrclaw-geoclaw-visclaw"]], "v5.10.0 release notes": [[118, "v5-10-0-release-notes"]], "v5.1.0 release notes": [[119, "v5-1-0-release-notes"]], "v5.2.0 release notes": [[120, "v5-2-0-release-notes"]], "v5.2.1 release notes": [[121, "v5-2-1-release-notes"]], "v5.2.2 release notes": [[122, "v5-2-2-release-notes"]], "v5.3.0 release notes": [[123, "v5-3-0-release-notes"]], "v5.3.1 release notes": [[124, "v5-3-1-release-notes"]], "v5.4.0 release notes": [[125, "v5-4-0-release-notes"]], "Global changes": [[125, "global-changes"]], "v5.4.1 release notes": [[126, "v5-4-1-release-notes"]], "Changes to documentation": [[126, "changes-to-documentation"], [127, "changes-to-documentation"]], "v5.5.0 release notes": [[127, "v5-5-0-release-notes"]], "v5.6.0 release notes": [[128, "v5-6-0-release-notes"]], "v5.6.1 release notes": [[129, "v5-6-1-release-notes"]], "v5.7.0 release notes": [[130, "v5-7-0-release-notes"]], "Python support": [[130, "python-support"]], "v5.7.1 release notes": [[131, "v5-7-1-release-notes"]], "v5.8.0 release notes": [[132, "v5-8-0-release-notes"]], "v5.8.1 release notes": [[133, "v5-8-1-release-notes"]], "v5.8.2 release notes": [[134, "v5-8-2-release-notes"]], "v5.9.0 release notes": [[135, "v5-9-0-release-notes"]], "v5.9.1 release notes": [[136, "v5-9-1-release-notes"]], "v5.9.2 release notes": [[137, "v5-9-2-release-notes"]], "Releases of Clawpack and release notes": [[138, "releases-of-clawpack-and-release-notes"]], "Other notes:": [[138, "other-notes"]], "Releases:": [[138, "id1"]], "Clawpack 4.x": [[138, "clawpack-4-x"]], "Checkpointing and restarting": [[139, "checkpointing-and-restarting"]], "Checkpointing a computation": [[139, "checkpointing-a-computation"]], "Restarting a computation": [[139, "restarting-a-computation"]], "Modifying the Makefile for a restart": [[139, "modifying-the-makefile-for-a-restart"]], "Output files after a restart": [[139, "output-files-after-a-restart"]], "Riemann solvers": [[140, "riemann-solvers"]], "One-dimensional Riemann solver": [[140, "one-dimensional-riemann-solver"]], "Pointwise Riemann solvers": [[140, "pointwise-riemann-solvers"]], "f-wave Riemann solvers": [[140, "f-wave-riemann-solvers"]], "2D Riemann solvers": [[140, "d-riemann-solvers"]], "Using a custom solver": [[140, "using-a-custom-solver"]], "Adding a solver to the Riemann repository": [[140, "adding-a-solver-to-the-riemann-repository"]], "Shallow water Riemann solvers in Clawpack": [[141, "shallow-water-riemann-solvers-in-clawpack"]], "One dimension": [[141, "one-dimension"]], "Two dimensions": [[141, "two-dimensions"]], "Layered shallow water equations": [[141, "layered-shallow-water-equations"]], "Potentially useful contributions (what\u2019s missing)": [[141, "potentially-useful-contributions-whats-missing"]], "Demonstrations": [[141, "demonstrations"]], "Roe": [[141, "roe"]], "HLL": [[141, "hll"]], "Ruled Rectangles": [[142, "ruled-rectangles"]], "Relation to convex polygons": [[142, "relation-to-convex-polygons"]], "Other attributes and methods": [[142, "other-attributes-and-methods"]], "ds": [[142, "ds"]], "slu": [[142, "slu"]], "bounding_box": [[142, "bounding-box"]], "mask_outside": [[142, "mask-outside"]], "read and write, and instantiating from a file": [[142, "read-and-write-and-instantiating-from-a-file"]], "make_kml": [[142, "make-kml"]], "A GeoClaw AMR flag region": [[142, "a-geoclaw-amr-flag-region"]], "A simple rectangle": [[142, "a-simple-rectangle"]], "Defining a Ruled Rectangle covering selected cells": [[142, "defining-a-ruled-rectangle-covering-selected-cells"]], "Example covering the continental shelf": [[142, "example-covering-the-continental-shelf"]], "Setting sea_level": [[143, "setting-sea-level"]], "Set Eta Init \u2013 spatially varying initial surface elevation": [[144, "set-eta-init-spatially-varying-initial-surface-elevation"]], "Default behavior, adjusting sea level by seismic deformation": [[144, "default-behavior-adjusting-sea-level-by-seismic-deformation"]], "Other use cases": [[144, "other-use-cases"]], "setaux default routines": [[145, "setaux-default-routines"]], "setaux routine in GeoClaw": [[145, "setaux-routine-in-geoclaw"]], "Set environment variables": [[146, "set-environment-variables"]], "CLAW": [[146, "claw"]], "FC": [[146, "fc"]], "Using setplot.py to specify the desired plots": [[147, "using-setplot-py-to-specify-the-desired-plots"]], "Plotting Data Objects": [[147, "plotting-data-objects"]], "Overview": [[147, "overview"]], "Specifying classic run-time parameters in setrun.py": [[148, "specifying-classic-run-time-parameters-in-setrun-py"]], "Input": [[148, "input"], [149, "input"]], "Output": [[148, "output"], [149, "output"]], "Run-time parameters": [[148, "run-time-parameters"], [149, "run-time-parameters"]], "Specifying AMRClaw run-time parameters in setrun.py": [[149, "specifying-amrclaw-run-time-parameters-in-setrun-py"]], "Special AMR parameters": [[149, "special-amr-parameters"]], "Debugging flags for additional printing": [[149, "debugging-flags-for-additional-printing"]], "Sample setrun.py module for AMRClaw": [[150, "sample-setrun-py-module-for-amrclaw"]], "Specifying GeoClaw parameters in setrun.py": [[151, "specifying-geoclaw-parameters-in-setrun-py"]], "Additional AMR parameters": [[151, "additional-amr-parameters"]], "General geo parameters": [[151, "general-geo-parameters"]], "Topography data file parameters": [[151, "topography-data-file-parameters"]], "qinit data file parameters": [[151, "qinit-data-file-parameters"]], "Force some cells to be initially dry": [[151, "force-some-cells-to-be-initially-dry"]], "Adjust sea level in some regions": [[151, "adjust-sea-level-in-some-regions"]], "AMR refinement region parameters": [[151, "amr-refinement-region-parameters"]], "Deprecated Fixedgrid output parameters": [[151, "deprecated-fixedgrid-output-parameters"]], "Fixed grid maximum monitoring / arrival times": [[151, "fixed-grid-maximum-monitoring-arrival-times"]], "Fixed grid output": [[151, "fixed-grid-output"]], "Storm Specification Data": [[151, "storm-specification-data"]], "Sample setrun.py module for classic Clawpack": [[152, "sample-setrun-py-module-for-classic-clawpack"]], "Saving and sharing results": [[153, "saving-and-sharing-results"]], "Making webpages of plots": [[153, "making-webpages-of-plots"]], "Sharing your results": [[153, "sharing-your-results"]], "Jupyter notebooks": [[153, "jupyter-notebooks"]], "Source terms for shallow water on the sphere": [[154, "source-terms-for-shallow-water-on-the-sphere"]], "Compiling the Sphinx documentation locally": [[155, "compiling-the-sphinx-documentation-locally"]], "src1d default routines": [[156, "src1d-default-routines"]], "src1d routine in GeoClaw": [[156, "src1d-routine-in-geoclaw"]], "src default routines": [[157, "src-default-routines"]], "src routine in GeoClaw": [[157, "src-routine-in-geoclaw"]], "Storm Specification Class and Tools": [[158, "storm-specification-class-and-tools"]], "Sources for Storm Surge Data": [[159, "sources-for-storm-surge-data"]], "Timing Statistics": [[161, "timing-statistics"]], "Topography data": [[162, "topography-data"]], "Downloading topography files": [[162, "downloading-topography-files"]], "NetCDF format": [[162, "netcdf-format"]], "Topography displacement files": [[162, "topography-displacement-files"]], "qinit data file": [[162, "qinit-data-file"]], "Python tools for working with topo and dtopo": [[163, "python-tools-for-working-with-topo-and-dtopo"]], "topotools module for working with topography data": [[164, "topotools-module-for-working-with-topography-data"]], "Troubleshooting Installation": [[165, "troubleshooting-installation"]], "Troubleshooting Fortran:": [[165, "troubleshooting-fortran"]], "Setting the Fortran compiler to be used by f2py (pip)": [[165, "setting-the-fortran-compiler-to-be-used-by-f2py-pip"]], "Trouble compiling Fortran code at the command line": [[165, "trouble-compiling-fortran-code-at-the-command-line"]], "Trouble running \u201cmake .exe\u201d": [[165, "trouble-running-make-exe"]], "Trouble running \u201cmake .data\u201d": [[165, "trouble-running-make-data"]], "Trouble running \u201cmake .output\u201d": [[165, "trouble-running-make-output"]], "Trouble running \u201cmake .plots\u201d": [[165, "trouble-running-make-plots"]], "Some sources of tsunami data": [[166, "some-sources-of-tsunami-data"]], "Topography / bathymetry": [[166, "topography-bathymetry"]], "Earthquake source models": [[166, "earthquake-source-models"]], "DART buoy data": [[166, "dart-buoy-data"]], "Tide gauges": [[166, "tide-gauges"]], "User files required for the Fortran code": [[167, "user-files-required-for-the-fortran-code"]], "Specifying the initial conditions": [[167, "specifying-the-initial-conditions"]], "Specifying the Riemann solver": [[167, "specifying-the-riemann-solver"]], "Specifying boundary conditions": [[167, "specifying-boundary-conditions"]], "Specifying problem-specific data": [[167, "specifying-problem-specific-data"]], "Specifying spatially-varying data using setaux": [[167, "specifying-spatially-varying-data-using-setaux"]], "Using b4step for work to be done before each time step": [[167, "using-b4step-for-work-to-be-done-before-each-time-step"]], "Using src for source terms": [[167, "using-src-for-source-terms"]], "Using src1d for source terms with AMRClaw": [[167, "using-src1d-for-source-terms-with-amrclaw"]], "Plotting with VisIt": [[168, "plotting-with-visit"]], "Clawpack Virtual Machine": [[169, "clawpack-virtual-machine"]], "Wave-propagation algorithms": [[170, "wave-propagation-algorithms"]], "One space dimension": [[170, "one-space-dimension"]], "Godunov\u2019s method": [[170, "godunov-s-method"]], "High-resolution methods": [[170, "high-resolution-methods"]], "f-wave formulation": [[170, "f-wave-formulation"]], "Capacity functions": [[170, "capacity-functions"]], "Source terms": [[170, "source-terms"]]}, "indexentries": {"clawplotaxes (built-in class)": [[0, "ClawPlotAxes"]], "gethandle()": [[0, "gethandle"], [2, "gethandle"], [3, "gethandle"]], "new_plotitem()": [[0, "new_plotitem"]], "clawplotdata (built-in class)": [[1, "ClawPlotData"]], "clearfigures()": [[1, "clearfigures"]], "clearframes()": [[1, "clearframes"]], "getaxes()": [[1, "getaxes"]], "getfigure()": [[1, "getfigure"]], "getframe()": [[1, "getframe"], [3, "getframe"]], "getitem()": [[1, "getitem"]], "iplotclaw()": [[1, 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"clawpack.geoclaw.dtopotools.SubFault.Mo"]], "mw() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.Mw"]], "mw() (in module clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.Mw"]], "siftfault (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.SiftFault"]], "subfault (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.SubFault"]], "subfault1d (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.SubFault1d"]], "subdividedplanefault (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.SubdividedPlaneFault"]], "tensorproductfault (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.TensorProductFault"]], "ucsbfault (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.UCSBFault"]], "calculate_geometry() (clawpack.geoclaw.dtopotools.subfault method)": [[32, "clawpack.geoclaw.dtopotools.SubFault.calculate_geometry"]], "calculate_geometry_triangles() (clawpack.geoclaw.dtopotools.subfault method)": [[32, "clawpack.geoclaw.dtopotools.SubFault.calculate_geometry_triangles"]], "centers (clawpack.geoclaw.dtopotools.subfault property)": [[32, "clawpack.geoclaw.dtopotools.SubFault.centers"]], "clawpack.geoclaw.dtopotools": [[32, "module-clawpack.geoclaw.dtopotools"]], "containing_rect() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.containing_rect"]], "convert_to_standard_units() (clawpack.geoclaw.dtopotools.subfault method)": [[32, "clawpack.geoclaw.dtopotools.SubFault.convert_to_standard_units"]], "coordinate_specification (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.coordinate_specification"]], "coordinate_specification (clawpack.geoclaw.dtopotools.subfault1d attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault1d.coordinate_specification"]], "corners (clawpack.geoclaw.dtopotools.subfault property)": [[32, "clawpack.geoclaw.dtopotools.SubFault.corners"]], "create_dtopo_xy() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.create_dtopo_xy"]], "create_dtopography() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.create_dtopography"]], "dz_at_t() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.dZ_at_t"]], "dz_at_t() (clawpack.geoclaw.dtopotools.dtopography1d method)": [[32, "clawpack.geoclaw.dtopotools.DTopography1d.dZ_at_t"]], "dz_cellave_at_t() (clawpack.geoclaw.dtopotools.dtopography1d method)": [[32, "clawpack.geoclaw.dtopotools.DTopography1d.dZ_cellave_at_t"]], "dz_max() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.dZ_max"]], "depth (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.depth"]], "dip (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.dip"]], "dynamic_slip() (clawpack.geoclaw.dtopotools.subfault method)": [[32, "clawpack.geoclaw.dtopotools.SubFault.dynamic_slip"]], "gauss_pts (clawpack.geoclaw.dtopotools.subfault property)": [[32, "clawpack.geoclaw.dtopotools.SubFault.gauss_pts"]], "latitude (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.latitude"]], "latitude (clawpack.geoclaw.dtopotools.subfault1d attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault1d.latitude"]], "length (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.length"]], "length (clawpack.geoclaw.dtopotools.subfault1d attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault1d.length"]], "longitude (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.longitude"]], "longitude (clawpack.geoclaw.dtopotools.subfault1d attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault1d.longitude"]], "module": [[32, "module-clawpack.geoclaw.dtopotools"], [35, "module-clawpack.geoclaw.fgmax_tools"], [37, "module-clawpack.geoclaw.fgout_tools"], [51, "module-clawpack.geoclaw.util"], [63, "module-clawpack.geoclaw.kmltools"], [92, "module-clawpack.pyclaw.limiters.tvd"], [97, "module-clawpack.pyclaw.fileio.ascii"], [97, "module-clawpack.pyclaw.fileio.binary"], [97, "module-clawpack.pyclaw.fileio.hdf5"], [97, "module-clawpack.pyclaw.fileio.netcdf"], [102, "module-clawpack.riemann.acoustics_1D_py"], [102, "module-clawpack.riemann.advection_1D_py"], [102, "module-clawpack.riemann.burgers_1D_py"], [102, "module-clawpack.riemann.euler_1D_py"], [102, "module-clawpack.riemann.shallow_1D_py"], [109, "module-clawpack.pyclaw.util"], [158, "module-clawpack.geoclaw.surge.storm"], [164, "module-clawpack.geoclaw.topotools"]], "mu (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.mu"]], "okada() (clawpack.geoclaw.dtopotools.subfault method)": [[32, "clawpack.geoclaw.dtopotools.SubFault.okada"]], "plot_dz_colors() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.plot_dZ_colors"]], "plot_dz_colors() (in module clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.plot_dZ_colors"]], "plot_dz_contours() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.plot_dZ_contours"]], "plot_dz_contours() (in module clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.plot_dZ_contours"]], "plot_subfaults() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.plot_subfaults"]], "plot_subfaults_depth() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.plot_subfaults_depth"]], "rake (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rake"]], "rake (clawpack.geoclaw.dtopotools.subfault1d attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault1d.rake"]], "read() (clawpack.geoclaw.dtopotools.csvfault method)": [[32, "clawpack.geoclaw.dtopotools.CSVFault.read"]], "read() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.read"]], "read() (clawpack.geoclaw.dtopotools.dtopography1d method)": [[32, "clawpack.geoclaw.dtopotools.DTopography1d.read"]], "read() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.read"]], "read() (clawpack.geoclaw.dtopotools.ucsbfault method)": [[32, "clawpack.geoclaw.dtopotools.UCSBFault.read"]], "rise_fraction() (in module clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.rise_fraction"]], "rise_shape (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rise_shape"]], "rise_time (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rise_time"]], "rise_time_starting (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rise_time_starting"]], "rupture_time (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rupture_time"]], "rupture_type (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rupture_type"]], "set_corners() (clawpack.geoclaw.dtopotools.subfault method)": [[32, "clawpack.geoclaw.dtopotools.SubFault.set_corners"]], "set_dynamic_slip() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.set_dynamic_slip"]], "set_subfaults() (clawpack.geoclaw.dtopotools.siftfault method)": [[32, "clawpack.geoclaw.dtopotools.SiftFault.set_subfaults"]], "slip (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.slip"]], "strike (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.strike"]], "strike (clawpack.geoclaw.dtopotools.subfault1d attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault1d.strike"]], "strike_direction() (in module clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.strike_direction"]], "subdivide() (clawpack.geoclaw.dtopotools.subdividedplanefault method)": [[32, "clawpack.geoclaw.dtopotools.SubdividedPlaneFault.subdivide"]], "width (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.width"]], "write() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.write"]], "write() (clawpack.geoclaw.dtopotools.dtopography1d method)": [[32, "clawpack.geoclaw.dtopotools.DTopography1d.write"]], "write() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.write"]], "fgmaxgrid (class in clawpack.geoclaw.fgmax_tools)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid"]], "adjust_fgmax_1d() (in module clawpack.geoclaw.fgmax_tools)": [[35, "clawpack.geoclaw.fgmax_tools.adjust_fgmax_1d"]], "bounding_box() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.bounding_box"]], "clawpack.geoclaw.fgmax_tools": [[35, "module-clawpack.geoclaw.fgmax_tools"]], "interp_dz() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.interp_dz"]], "ps4_to_arrays() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.ps4_to_arrays"]], "read_fgmax_grids_data() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.read_fgmax_grids_data"]], "read_output() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.read_output"]], "write_to_fgmax_data() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.write_to_fgmax_data"]], "b (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.B"]], "fgoutframe (class in clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame"]], "fgoutgrid (class in clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid"]], "x (clawpack.geoclaw.fgout_tools.fgoutgrid property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.X"], [37, "clawpack.geoclaw.fgout_tools.FGoutGrid.x"]], "y (clawpack.geoclaw.fgout_tools.fgoutgrid property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.Y"], [37, "clawpack.geoclaw.fgout_tools.FGoutGrid.y"]], "clawpack.geoclaw.fgout_tools": [[37, "module-clawpack.geoclaw.fgout_tools"]], "eta (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.eta"]], "extent_centers (clawpack.geoclaw.fgout_tools.fgoutgrid property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.extent_centers"]], "extent_edges (clawpack.geoclaw.fgout_tools.fgoutgrid property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.extent_edges"]], "get_as_array() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.get_as_array"]], "h (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.h"]], "hss (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.hss"]], "hu (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.hu"]], "hv (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.hv"]], "make_fgout_fcn_xy() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.make_fgout_fcn_xy"]], "make_fgout_fcn_xyt() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.make_fgout_fcn_xyt"]], "print_netcdf_info() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.print_netcdf_info"]], "read_fgout_grids_data() (clawpack.geoclaw.fgout_tools.fgoutgrid method)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.read_fgout_grids_data"]], "read_frame() (clawpack.geoclaw.fgout_tools.fgoutgrid method)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.read_frame"]], "read_netcdf() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.read_netcdf"]], "read_netcdf_arrays() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.read_netcdf_arrays"]], "s (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.s"]], "set_plotdata() (clawpack.geoclaw.fgout_tools.fgoutgrid method)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.set_plotdata"]], "u (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.u"]], "v (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.v"]], "write_netcdf() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.write_netcdf"]], "write_to_fgout_data() (clawpack.geoclaw.fgout_tools.fgoutgrid method)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.write_to_fgout_data"]], "bearing() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.bearing"]], "clawpack.geoclaw.util": [[51, "module-clawpack.geoclaw.util"]], "dist_latlong2meters() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.dist_latlong2meters"]], "dist_meters2latlong() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.dist_meters2latlong"]], "dms2decimal() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.dms2decimal"]], "fetch_noaa_tide_data() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.fetch_noaa_tide_data"]], "gctransect() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.gctransect"]], "haversine() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.haversine"]], "inv_haversine() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.inv_haversine"]], "box2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.box2kml"]], "clawpack.geoclaw.kmltools": [[63, "module-clawpack.geoclaw.kmltools"]], "deg2dms() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.deg2dms"]], "dtopo2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.dtopo2kml"]], "f2s() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.f2s"]], "fgmax2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.fgmax2kml"]], "fgout2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.fgout2kml"]], "gauges2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.gauges2kml"]], "kml_build_colorbar() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.kml_build_colorbar"]], "kml_cb() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.kml_cb"]], "kml_png() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.kml_png"]], "kml_timespan() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.kml_timespan"]], "line2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.line2kml"]], "make_input_data_kmls() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.make_input_data_kmls"]], "pcolorcells_for_kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.pcolorcells_for_kml"]], "png2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.png2kml"]], "poly2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.poly2kml"]], "quad2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.quad2kml"]], "regions2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.regions2kml"]], "topo2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.topo2kml"]], "topo2kmz() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.topo2kmz"]], "transect2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.transect2kml"]], "controller (class in clawpack.pyclaw.controller)": [[91, "clawpack.pyclaw.controller.Controller"]], "f_file_name (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.F_file_name"]], "f_path (clawpack.pyclaw.controller.controller property)": [[91, "clawpack.pyclaw.controller.Controller.F_path"]], "check_validity() (clawpack.pyclaw.controller.controller method)": [[91, "clawpack.pyclaw.controller.Controller.check_validity"]], "compute_f (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.compute_F"]], "compute_p (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.compute_p"]], "file_prefix_p (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.file_prefix_p"]], "frames (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.frames"]], "keep_copy (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.keep_copy"]], "nstepout (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.nstepout"]], "num_output_times (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.num_output_times"]], "out_times (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.out_times"]], "outdir (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.outdir"]], "outdir_p (clawpack.pyclaw.controller.controller property)": [[91, "clawpack.pyclaw.controller.Controller.outdir_p"]], "output_file_prefix (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.output_file_prefix"]], "output_format (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.output_format"]], "output_options (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.output_options"]], "output_style (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.output_style"]], "overwrite (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.overwrite"]], "plot() (clawpack.pyclaw.controller.controller method)": [[91, "clawpack.pyclaw.controller.Controller.plot"]], "plotdata (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.plotdata"]], "run() (clawpack.pyclaw.controller.controller method)": [[91, "clawpack.pyclaw.controller.Controller.run"]], "rundir (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.rundir"]], "runmake (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.runmake"]], "savecode (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.savecode"]], "solver (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.solver"]], "tfinal (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.tfinal"]], "verbosity (clawpack.pyclaw.controller.controller property)": [[91, "clawpack.pyclaw.controller.Controller.verbosity"]], "viewable_attributes (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.viewable_attributes"]], "write_aux_always (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.write_aux_always"]], "write_aux_init (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.write_aux_init"]], "xclawcmd (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.xclawcmd"]], "xclawerr (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.xclawerr"]], "xclawout (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.xclawout"]], "xdir (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.xdir"]], "arora_roe() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.arora_roe"]], "beta_limiter() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.beta_limiter"]], "cada_torrilhon_limiter() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.cada_torrilhon_limiter"]], "cada_torrilhon_limiter_nonlinear() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.cada_torrilhon_limiter_nonlinear"]], "cfl_superbee() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.cfl_superbee"]], "cfl_superbee_theta() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.cfl_superbee_theta"]], "clawpack.pyclaw.limiters.tvd": [[92, "module-clawpack.pyclaw.limiters.tvd"]], "hyperbee_limiter() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.hyperbee_limiter"]], "limit() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.limit"]], "mc_limiter() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.mc_limiter"]], "minmod_limiter() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.minmod_limiter"]], "superbee_limiter() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.superbee_limiter"]], "superpower_limiter() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.superpower_limiter"]], "theta_limiter() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.theta_limiter"]], "upper_bound_limiter() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.upper_bound_limiter"]], "van_leer_klein_sharpening_limiter() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.van_leer_klein_sharpening_limiter"]], "dimension (class in clawpack.pyclaw.geometry)": [[94, "clawpack.pyclaw.geometry.Dimension"]], "domain (class in clawpack.petclaw.geometry)": [[94, "clawpack.petclaw.geometry.Domain"]], "domain (class in clawpack.pyclaw.geometry)": [[94, "clawpack.pyclaw.geometry.Domain"]], "grid (class in clawpack.pyclaw.geometry)": [[94, "clawpack.pyclaw.geometry.Grid"]], "patch (class in clawpack.petclaw.geometry)": [[94, "clawpack.petclaw.geometry.Patch"]], "patch (class in clawpack.pyclaw.geometry)": [[94, "clawpack.pyclaw.geometry.Patch"]], "add_dimension() (clawpack.pyclaw.geometry.grid method)": [[94, "clawpack.pyclaw.geometry.Grid.add_dimension"]], "add_dimension() (clawpack.pyclaw.geometry.patch method)": [[94, "clawpack.pyclaw.geometry.Patch.add_dimension"]], "add_gauges() (clawpack.pyclaw.geometry.grid method)": [[94, "clawpack.pyclaw.geometry.Grid.add_gauges"]], "c_center() (clawpack.pyclaw.geometry.grid method)": [[94, "clawpack.pyclaw.geometry.Grid.c_center"]], "c_centers (clawpack.pyclaw.geometry.grid property)": [[94, "clawpack.pyclaw.geometry.Grid.c_centers"]], "c_centers_with_ghost() (clawpack.pyclaw.geometry.grid method)": [[94, "clawpack.pyclaw.geometry.Grid.c_centers_with_ghost"]], "c_nodes (clawpack.pyclaw.geometry.grid property)": [[94, "clawpack.pyclaw.geometry.Grid.c_nodes"]], "c_nodes_with_ghost() (clawpack.pyclaw.geometry.grid method)": [[94, "clawpack.pyclaw.geometry.Grid.c_nodes_with_ghost"]], "centers (clawpack.pyclaw.geometry.dimension property)": [[94, "clawpack.pyclaw.geometry.Dimension.centers"]], "centers_with_ghost() (clawpack.pyclaw.geometry.dimension method)": [[94, "clawpack.pyclaw.geometry.Dimension.centers_with_ghost"]], "delta (clawpack.pyclaw.geometry.dimension property)": [[94, "clawpack.pyclaw.geometry.Dimension.delta"]], "delta (clawpack.pyclaw.geometry.patch property)": [[94, "clawpack.pyclaw.geometry.Patch.delta"]], "dimensional_split (clawpack.petclaw.geometry.domain attribute)": [[94, "clawpack.petclaw.geometry.Domain.dimensional_split"]], "dimensions (clawpack.pyclaw.geometry.grid property)": [[94, "clawpack.pyclaw.geometry.Grid.dimensions"]], "dimensions (clawpack.pyclaw.geometry.patch property)": [[94, "clawpack.pyclaw.geometry.Patch.dimensions"]], "fwave (clawpack.petclaw.geometry.domain attribute)": [[94, "clawpack.petclaw.geometry.Domain.fwave"]], "gauge_dir_name (clawpack.pyclaw.geometry.grid attribute)": [[94, "clawpack.pyclaw.geometry.Grid.gauge_dir_name"]], "gauge_file_names (clawpack.pyclaw.geometry.grid attribute)": [[94, "clawpack.pyclaw.geometry.Grid.gauge_file_names"]], "gauge_files (clawpack.pyclaw.geometry.grid attribute)": [[94, "clawpack.pyclaw.geometry.Grid.gauge_files"]], "gauges (clawpack.pyclaw.geometry.grid attribute)": [[94, "clawpack.pyclaw.geometry.Grid.gauges"]], "get_dim_attribute() (clawpack.pyclaw.geometry.grid method)": [[94, "clawpack.pyclaw.geometry.Grid.get_dim_attribute"]], "get_dim_attribute() (clawpack.pyclaw.geometry.patch method)": [[94, "clawpack.pyclaw.geometry.Patch.get_dim_attribute"]], "grid (clawpack.pyclaw.geometry.domain property)": [[94, "clawpack.pyclaw.geometry.Domain.grid"]], "kernel_language (clawpack.petclaw.geometry.domain attribute)": [[94, "clawpack.petclaw.geometry.Domain.kernel_language"]], "level (clawpack.pyclaw.geometry.patch attribute)": [[94, "clawpack.pyclaw.geometry.Patch.level"]], "lower_global (clawpack.pyclaw.geometry.patch property)": [[94, "clawpack.pyclaw.geometry.Patch.lower_global"]], "mthlim (clawpack.petclaw.geometry.domain attribute)": [[94, "clawpack.petclaw.geometry.Domain.mthlim"]], "name (clawpack.pyclaw.geometry.patch property)": [[94, "clawpack.pyclaw.geometry.Patch.name"]], "nodes (clawpack.pyclaw.geometry.dimension property)": [[94, "clawpack.pyclaw.geometry.Dimension.nodes"]], "nodes_with_ghost() (clawpack.pyclaw.geometry.dimension method)": [[94, "clawpack.pyclaw.geometry.Dimension.nodes_with_ghost"]], "num_cells_global (clawpack.pyclaw.geometry.patch property)": [[94, "clawpack.pyclaw.geometry.Patch.num_cells_global"]], "num_dim (clawpack.pyclaw.geometry.domain property)": [[94, "clawpack.pyclaw.geometry.Domain.num_dim"]], "num_dim (clawpack.pyclaw.geometry.grid property)": [[94, "clawpack.pyclaw.geometry.Grid.num_dim"]], "num_dim (clawpack.pyclaw.geometry.patch property)": [[94, "clawpack.pyclaw.geometry.Patch.num_dim"]], "order (clawpack.petclaw.geometry.domain attribute)": [[94, "clawpack.petclaw.geometry.Domain.order"]], "p_center() (clawpack.pyclaw.geometry.grid method)": [[94, "clawpack.pyclaw.geometry.Grid.p_center"]], "p_centers (clawpack.pyclaw.geometry.grid property)": [[94, "clawpack.pyclaw.geometry.Grid.p_centers"]], "p_nodes (clawpack.pyclaw.geometry.grid property)": [[94, "clawpack.pyclaw.geometry.Grid.p_nodes"]], "patch (clawpack.pyclaw.geometry.domain property)": [[94, "clawpack.pyclaw.geometry.Domain.patch"]], "patch_index (clawpack.pyclaw.geometry.patch attribute)": [[94, "clawpack.pyclaw.geometry.Patch.patch_index"]], "plot() (clawpack.pyclaw.geometry.grid method)": [[94, "clawpack.pyclaw.geometry.Grid.plot"]], "setup_gauge_files() (clawpack.pyclaw.geometry.grid method)": [[94, "clawpack.pyclaw.geometry.Grid.setup_gauge_files"]], "source_split (clawpack.petclaw.geometry.domain attribute)": 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(in module clawpack.riemann.euler_1d_py)": [[102, "clawpack.riemann.euler_1D_py.euler_hllc_1D"]], "euler_roe_1d() (in module clawpack.riemann.euler_1d_py)": [[102, "clawpack.riemann.euler_1D_py.euler_roe_1D"]], "shallow_exact_1d() (in module clawpack.riemann.shallow_1d_py)": [[102, "clawpack.riemann.shallow_1D_py.shallow_exact_1D"]], "shallow_fwave_1d() (in module clawpack.riemann.shallow_1d_py)": [[102, "clawpack.riemann.shallow_1D_py.shallow_fwave_1d"]], "shallow_hll_1d() (in module clawpack.riemann.shallow_1d_py)": [[102, "clawpack.riemann.shallow_1D_py.shallow_hll_1D"]], "shallow_roe_1d() (in module clawpack.riemann.shallow_1d_py)": [[102, "clawpack.riemann.shallow_1D_py.shallow_roe_1D"]], "solution (class in clawpack.pyclaw.solution)": [[103, "clawpack.pyclaw.solution.Solution"]], "is_valid() (clawpack.pyclaw.solution.solution method)": [[103, "clawpack.pyclaw.solution.Solution.is_valid"]], "patch (clawpack.pyclaw.solution.solution property)": [[103, "clawpack.pyclaw.solution.Solution.patch"]], "plot() (clawpack.pyclaw.solution.solution method)": [[103, "clawpack.pyclaw.solution.Solution.plot"]], "read() (clawpack.pyclaw.solution.solution method)": [[103, "clawpack.pyclaw.solution.Solution.read"]], "set_all_states() (clawpack.pyclaw.solution.solution method)": [[103, "clawpack.pyclaw.solution.Solution.set_all_states"]], "start_frame (clawpack.pyclaw.solution.solution property)": [[103, "clawpack.pyclaw.solution.Solution.start_frame"]], "state (clawpack.pyclaw.solution.solution property)": [[103, "clawpack.pyclaw.solution.Solution.state"]], "write() (clawpack.pyclaw.solution.solution method)": [[103, "clawpack.pyclaw.solution.Solution.write"]], "clawsolver (class in clawpack.pyclaw.classic.solver)": [[104, "clawpack.pyclaw.classic.solver.ClawSolver"]], "sharpclawsolver (class in clawpack.pyclaw.sharpclaw.solver)": [[104, "clawpack.pyclaw.sharpclaw.solver.SharpClawSolver"]], "accept_reject_step() 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\ No newline at end of file
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4, 6, 17, 30, 47, 51, 56, 58, 70, 71, 74, 82, 88, 92, 99, 101, 118, 140, 142, 147, 164, 170], "ff0000": [3, 63], "No": [3, 43, 55, 59, 71, 94, 104, 133, 140, 148, 151, 165], "extra": [3, 55, 141], "give": [3, 6, 9, 10, 13, 16, 17, 18, 19, 26, 30, 32, 34, 35, 36, 38, 39, 47, 49, 56, 63, 64, 70, 72, 75, 76, 77, 82, 84, 99, 100, 104, 116, 120, 124, 125, 129, 132, 142, 148, 151, 162, 164, 166], "polygon": [3, 7, 41, 55, 63, 130, 164], "curv": [3, 47, 81, 142], "fill_between": 3, "plot_var2": 3, "zero": [3, 16, 32, 34, 42, 44, 47, 63, 71, 72, 88, 101, 102, 106, 108, 132, 142, 143], "fill_wher": 3, "plotitem": [3, 29, 47, 82, 147], "mean": [3, 13, 24, 30, 34, 42, 47, 52, 56, 62, 71, 72, 98, 99, 115, 118, 140, 143, 148, 150, 152, 166], "map_2d_to_1d": 3, "In": [3, 5, 6, 8, 11, 12, 15, 16, 18, 19, 21, 22, 24, 29, 32, 34, 36, 41, 44, 47, 48, 49, 52, 55, 56, 57, 58, 59, 62, 63, 64, 66, 67, 70, 71, 72, 74, 75, 77, 78, 82, 83, 84, 88, 89, 94, 96, 97, 98, 99, 100, 101, 102, 104, 106, 109, 111, 112, 113, 115, 118, 119, 120, 123, 124, 125, 127, 128, 132, 136, 139, 140, 142, 144, 145, 146, 148, 149, 151, 156, 157, 162, 164, 165, 167, 170], "about": [3, 5, 7, 13, 14, 16, 18, 19, 24, 27, 35, 36, 37, 38, 39, 43, 49, 51, 52, 57, 59, 63, 66, 68, 71, 77, 83, 85, 88, 96, 97, 99, 104, 111, 116, 124, 128, 130, 135, 136, 140, 147, 149, 150, 151, 162, 165, 167, 170], "j": [3, 4, 5, 15, 17, 22, 24, 29, 35, 42, 56, 63, 70, 71, 77, 84, 96, 97, 115, 119, 120, 144, 145], "v": [3, 16, 27, 31, 32, 34, 36, 37, 51, 64, 67, 116, 124, 149, 162], "radiu": [3, 151, 158, 159, 164], "q0_vs_radiu": 3, "convert": [3, 24, 27, 32, 35, 37, 45, 51, 55, 62, 63, 66, 75, 78, 89, 96, 101, 109, 110, 127, 130, 136, 137, 148, 149, 158, 162, 166], "numpi": [3, 13, 32, 34, 36, 37, 42, 51, 70, 85, 87, 88, 89, 91, 94, 101, 106, 107, 108, 110, 116, 137, 141, 142, 150, 164, 165], "sqrt": [3, 34, 37, 49, 68, 88, 101, 102, 108, 150], "q0": [3, 101], "work": [3, 5, 8, 13, 16, 19, 21, 22, 24, 26, 27, 28, 30, 31, 34, 36, 38, 39, 43, 48, 52, 55, 56, 57, 58, 59, 60, 61, 62, 63, 70, 71, 74, 75, 76, 82, 85, 86, 87, 88, 90, 91, 92, 96, 97, 98, 99, 102, 104, 105, 110, 111, 113, 114, 115, 116, 118, 121, 122, 123, 124, 125, 126, 127, 130, 132, 133, 138, 140, 146, 147, 148, 149, 153, 159, 162, 165, 169], "symbol": [3, 71, 111], "best": [3, 4, 16, 24, 28, 30, 36, 44, 49, 55, 57, 59, 60, 66, 72, 74, 76, 81, 82, 97, 101, 113, 114, 115, 116, 127, 138, 140, 151, 155, 158, 162, 167], "descript": [3, 4, 6, 9, 24, 25, 27, 32, 36, 37, 63, 71, 75, 78, 81, 96, 97, 109, 113, 115, 137, 140, 141, 151, 158, 162, 170], "celledges_show": [3, 24], "draw": 3, "amr_celledges_show": 3, "level": [3, 6, 7, 16, 19, 25, 29, 31, 34, 36, 41, 42, 47, 48, 50, 51, 52, 55, 58, 59, 61, 62, 71, 72, 76, 77, 89, 91, 94, 96, 97, 98, 104, 111, 112, 115, 116, 119, 120, 124, 125, 127, 130, 139, 142, 143, 146, 148, 149, 150, 152, 161, 162, 164, 166, 167], "patchedges_show": [3, 24], "mostli": [3, 81, 96, 130, 137], "contour_level": [3, 164], "three": [3, 13, 17, 24, 32, 34, 37, 52, 55, 67, 71, 75, 99, 103, 109, 116, 142, 148, 151, 162, 164, 167], "contour_nlevel": 3, "contour_min": 3, "minimum": [3, 19, 34, 47, 55, 75, 108, 125, 151, 164], "contour_max": 3, "maximum": [3, 24, 32, 34, 35, 36, 48, 71, 72, 104, 108, 115, 119, 120, 127, 130, 148, 149, 150, 152, 158, 159], "contour_color": 3, "specif": [3, 5, 12, 19, 24, 30, 32, 47, 48, 49, 51, 55, 56, 62, 65, 67, 68, 77, 86, 87, 89, 91, 96, 97, 98, 102, 103, 109, 113, 125, 126, 127, 130, 147, 148, 149, 150, 152, 159, 162], "b": [3, 5, 17, 30, 32, 34, 35, 36, 37, 42, 47, 49, 56, 58, 59, 68, 72, 82, 104, 115, 123, 130, 142, 143, 144, 151, 164, 166], "0000ff": [3, 63], "colormap": [3, 32, 42, 50, 55, 70, 71, 81, 83, 124, 130, 164], "amr_contour_color": 3, "As": [3, 18, 19, 39, 42, 48, 49, 52, 58, 59, 63, 64, 88, 108, 110, 114, 118, 119, 130, 140, 141, 144, 151, 154, 160, 167], "black": [3, 47], "subsequ": [3, 10, 71], "both": [3, 16, 18, 19, 30, 32, 35, 36, 37, 38, 39, 41, 42, 47, 52, 57, 60, 62, 67, 70, 71, 75, 77, 89, 97, 98, 99, 104, 105, 115, 116, 123, 124, 127, 130, 135, 140, 141, 142, 144, 148, 149, 150, 152, 156, 162, 167], "fine": [3, 19, 34, 35, 36, 42, 49, 58, 74, 78, 96, 101, 115, 118, 125, 132, 142, 144, 148, 149, 151, 162, 167], "coars": [3, 34, 36, 55, 115, 118, 125, 132, 148, 162, 167], "anoth": [3, 19, 24, 34, 36, 42, 47, 51, 55, 62, 63, 77, 81, 85, 93, 104, 107, 116, 127, 158, 167], "refin": [3, 4, 5, 7, 8, 17, 19, 24, 36, 48, 49, 52, 55, 56, 57, 70, 71, 77, 78, 88, 125, 127, 128, 130, 132, 142, 144, 147, 148, 149, 150, 161, 162, 167], "region": [3, 6, 7, 13, 16, 19, 24, 34, 36, 41, 42, 48, 52, 53, 55, 63, 68, 72, 75, 78, 113, 118, 127, 130, 132, 143, 144, 149, 150, 154, 162, 164], "lack": 3, "hidden": [3, 66, 82], "blank": [3, 35, 63, 158], "coarser": [3, 16, 19, 57, 125, 144, 148, 149, 167], "easili": [3, 13, 30, 34, 55, 58, 71, 82, 89, 94, 105, 109, 116, 118, 130, 153], "contour_show": 3, "commonli": [3, 19, 71, 82, 84], "amr_contour_show": 3, "determin": [3, 5, 6, 32, 34, 37, 42, 47, 48, 49, 52, 54, 55, 58, 63, 72, 75, 82, 92, 94, 97, 102, 106, 111, 115, 120, 124, 125, 139, 142, 143, 147, 148, 149, 151, 164, 167], "whether": [3, 6, 13, 16, 24, 51, 57, 60, 62, 64, 65, 66, 71, 86, 94, 97, 98, 102, 103, 104, 115, 116, 125, 140, 142, 148, 149, 151, 164], "view": [3, 4, 24, 36, 38, 39, 47, 48, 49, 51, 55, 57, 58, 63, 77, 81, 83, 84, 88, 99, 105, 110, 123, 127, 153, 155], "finest": [3, 19, 34, 36, 42, 47, 72, 127, 161, 164], "contour_kwarg": [3, 164], "pcolor_cmap": [3, 55], "pcolor_cmin": 3, "pcolor_cmax": 3, "thei": [3, 5, 6, 13, 16, 18, 19, 26, 29, 30, 32, 34, 36, 41, 42, 45, 47, 49, 52, 55, 58, 59, 62, 63, 64, 67, 70, 71, 77, 81, 94, 96, 101, 104, 109, 115, 116, 125, 132, 144, 147, 151, 154, 158, 162, 164, 167], "chosen": [3, 31, 34, 41, 42, 49, 55, 57, 70, 108, 115, 132, 143, 149], "vari": [3, 15, 17, 27, 32, 42, 48, 49, 57, 68, 72, 101, 103, 123, 130, 140, 141, 143, 145, 149, 151, 170], "yield": [3, 18, 19], "veri": [3, 5, 16, 17, 18, 19, 24, 49, 52, 55, 59, 60, 63, 75, 82, 86, 89, 97, 98, 99, 100, 101, 104, 116, 118, 120, 124, 135, 142, 144, 148, 159, 162], "confus": [3, 57, 62, 111, 132, 140], "add_colorbar": [3, 32, 164], "ad": [3, 12, 16, 22, 24, 26, 27, 29, 31, 34, 36, 37, 44, 47, 51, 57, 58, 59, 62, 63, 64, 68, 71, 72, 75, 82, 87, 89, 92, 94, 95, 98, 99, 111, 112, 113, 115, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 133, 135, 136, 137, 139, 144, 148, 149, 151, 154, 158, 161, 164, 168], "imshow_cmap": 3, "imshow_cmin": 3, "imshow_cmax": 3, "hillshade_vertical_exagger": 3, "vertic": [3, 32, 41, 52, 55, 63, 70, 142, 143, 151, 164, 166], "exagger": 3, "calul": 3, "hillshade_azimuth_degre": 3, "light": [3, 55, 71, 115], "sourc": [3, 4, 17, 18, 19, 25, 27, 30, 32, 44, 48, 49, 55, 56, 58, 59, 61, 62, 63, 65, 67, 68, 81, 86, 89, 93, 94, 95, 104, 105, 107, 108, 109, 113, 114, 116, 118, 125, 126, 127, 136, 137, 141, 143, 148, 150, 151, 152, 155, 156, 157, 158, 162], "azimuth": 3, "angl": [3, 16, 32, 51, 75], "315": 3, "northwest": 3, "360": [3, 51, 55, 75], "degre": [3, 32, 49, 51, 55, 63, 72, 75], "clockwis": [3, 34, 51, 75, 164], "north": [3, 34, 42, 49, 51, 70, 75], "recommend": [3, 4, 18, 19, 32, 34, 36, 38, 39, 58, 59, 60, 62, 76, 81, 90, 94, 96, 97, 99, 100, 104, 105, 107, 108, 115, 127, 135, 137, 148, 150, 152, 168], "proper": [3, 6, 15, 42, 47, 56, 57, 58, 59, 63, 68, 70, 71, 97, 109, 119, 125, 145, 149, 150, 156, 157, 158, 167], "interpret": [3, 32, 57, 75, 97, 127, 162], "peopl": [3, 4, 12, 13, 86], "hillshade_altitude_degre": 3, "altitud": 3, "horizon": 3, "45": [3, 104], "90": [3, 27, 32, 49, 55, 67, 75, 105, 107, 136], "hillshade_latlon": 3, "correct": [3, 18, 19, 22, 30, 44, 58, 59, 67, 68, 71, 82, 88, 94, 97, 99, 103, 109, 119, 120, 124, 144, 148, 150, 151, 152], "unit": [3, 32, 49, 50, 51, 56, 75, 94, 125, 136, 158], "z": [3, 42, 57, 63, 70, 71, 88, 94, 102, 108, 142, 148, 149, 162, 164], "111200": 3, "reflect": [3, 4, 5, 16, 30, 115, 127, 148, 150, 152], "relat": [3, 7, 19, 24, 26, 58, 78, 102, 113, 126, 130, 132, 143], "pre": [3, 13, 35, 59, 90, 97], "pend": 3, "amr_": [3, 7], "whose": [3, 49, 82, 89, 101, 102, 144, 148, 149, 164], "origin": [3, 6, 13, 16, 18, 19, 22, 30, 32, 36, 37, 45, 47, 56, 58, 63, 70, 76, 77, 89, 104, 109, 119, 125, 132, 139, 149, 150, 151, 152, 164], "hand": [3, 5, 19, 20, 21, 22, 68, 88, 116, 118, 135, 136, 137, 142], "higher": [3, 6, 18, 19, 55, 94, 104, 105, 115, 130, 140, 142, 143, 144], "shorter": [3, 115, 164], "last": [3, 20, 29, 34, 36, 59, 61, 82, 88, 89, 101, 108, 118, 124, 135, 136, 137, 148, 158], "repeatedli": [3, 99, 105, 149], "finer": [3, 7, 19, 34, 55, 115, 119, 120, 142, 148, 149], "celledg": [3, 32, 49], "colorbar_shrink": [3, 32], "colorbar_label": 3, "colorbar_tick": 3, "colorbar_tick_label": 3, "colorbar_extend": [3, 136], "colorbar_kwarg": [3, 127], "stand": [4, 132], "conserv": [4, 5, 6, 17, 18, 19, 98, 104, 106, 128, 141, 167, 170], "law": [4, 17, 63, 151, 170], "packag": [4, 27, 30, 31, 38, 39, 55, 59, 60, 67, 77, 78, 81, 85, 86, 88, 94, 96, 98, 100, 101, 103, 105, 108, 110, 111, 118, 129, 130, 165, 168], "wa": [4, 5, 6, 14, 19, 21, 22, 27, 31, 32, 34, 35, 36, 37, 42, 49, 52, 54, 58, 59, 66, 68, 70, 71, 75, 82, 99, 103, 104, 106, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 139, 142, 144, 161, 162, 164], "initi": [4, 5, 7, 12, 13, 18, 19, 24, 27, 32, 36, 37, 47, 48, 49, 51, 52, 55, 59, 64, 67, 71, 72, 75, 77, 78, 84, 86, 87, 88, 89, 91, 92, 94, 95, 97, 98, 102, 103, 104, 106, 107, 109, 112, 115, 124, 127, 130, 132, 140, 143, 148, 149, 150, 152, 154, 158, 162, 164], "develop": [4, 6, 7, 12, 13, 19, 20, 24, 25, 45, 52, 56, 58, 61, 62, 65, 70, 71, 81, 85, 86, 89, 96, 101, 104, 105, 111, 113, 116, 118, 127, 128, 130, 132, 135, 136, 137, 140, 143, 144, 150], "linear": [4, 5, 17, 18, 19, 32, 36, 37, 47, 49, 55, 72, 75, 82, 88, 92, 104, 118, 128, 140, 141, 142], "nonlinear": [4, 5, 17, 52, 92, 140, 148, 170], "hyperbol": [4, 5, 6, 17, 18, 19, 45, 78, 89, 96, 101, 102, 108, 140, 148, 151, 167, 170], "system": [4, 16, 17, 18, 19, 25, 39, 40, 48, 55, 56, 62, 63, 67, 76, 77, 86, 96, 97, 98, 99, 101, 102, 105, 108, 111, 116, 118, 140, 148, 150, 152, 160, 167, 170], "focu": [4, 48], "high": [4, 17, 34, 52, 55, 70, 72, 75, 78, 89, 96, 104, 140, 143, 144, 166, 167], "resolut": [4, 6, 17, 32, 34, 36, 42, 47, 64, 72, 75, 94, 104, 108, 109, 119, 123, 127, 128, 135, 140, 143, 162, 164, 166, 167], "godunov": [4, 94, 104, 148, 150, 152, 167], "method": [4, 5, 7, 17, 19, 34, 36, 37, 41, 45, 47, 57, 70, 72, 82, 84, 88, 91, 92, 94, 99, 103, 104, 109, 115, 116, 123, 140, 147, 148, 149, 150, 152, 158, 161, 162, 164, 167], "framework": [4, 86, 89, 124, 125], "applic": [4, 6, 15, 16, 18, 19, 21, 22, 24, 25, 26, 30, 31, 36, 37, 38, 39, 40, 44, 45, 46, 47, 48, 50, 59, 61, 62, 67, 70, 76, 77, 84, 93, 94, 95, 96, 98, 104, 109, 112, 114, 115, 116, 118, 119, 122, 123, 125, 126, 127, 129, 130, 140, 142, 144, 145, 148, 151, 156, 157, 162, 164, 165, 167, 168], "finit": [4, 17, 34, 36, 45, 49, 57, 63, 70, 71, 72, 75, 104, 130, 142, 151, 161, 162, 167], "volum": [4, 17, 31, 34, 36, 45, 49, 57, 63, 70, 71, 72, 96, 130, 142, 149, 151, 161, 162, 167], "riemann": [4, 5, 8, 22, 24, 25, 30, 31, 48, 59, 62, 67, 78, 86, 88, 94, 95, 104, 105, 106, 108, 111, 146, 148, 150, 152, 156, 157, 170], "solver": [4, 5, 6, 22, 24, 25, 27, 30, 48, 49, 60, 61, 62, 67, 85, 86, 87, 91, 94, 95, 98, 106, 118, 121, 123, 125, 126, 127, 128, 129, 130, 132, 137, 148, 150, 152, 156, 157, 170], "resolv": [4, 34, 36, 55, 58, 62, 113, 127, 144], "jump": [4, 5, 71, 84, 94, 104, 125, 148, 170], "discontinu": [4, 104, 170], "interfac": [4, 21, 24, 71, 86, 89, 92, 96, 97, 102, 104, 109, 140, 167, 168, 170], "wave": [4, 5, 6, 16, 17, 18, 27, 34, 42, 48, 49, 52, 55, 56, 75, 92, 94, 96, 101, 102, 104, 115, 123, 125, 126, 132, 141, 142, 143, 148, 149, 150, 151, 152, 154, 167], "propag": [4, 5, 6, 17, 18, 19, 27, 32, 49, 52, 55, 56, 75, 94, 96, 104, 115, 125, 140], "neighbor": [4, 18, 19, 36, 42, 70, 72, 115, 125, 144, 149, 150, 164], "formul": [4, 5, 19, 52, 68, 140, 148], "allow": [4, 6, 13, 24, 29, 30, 31, 34, 36, 37, 41, 42, 47, 48, 51, 54, 55, 57, 58, 62, 68, 70, 71, 75, 76, 78, 81, 82, 91, 96, 97, 98, 104, 106, 109, 110, 111, 115, 116, 119, 120, 123, 124, 125, 126, 127, 129, 130, 132, 135, 136, 137, 140, 142, 148, 150, 151, 152, 153, 158, 162, 164, 166], "easi": [4, 6, 11, 31, 41, 62, 71, 89, 98, 99, 100, 142, 153, 167], "extens": [4, 17, 19, 24, 26, 30, 32, 52, 55, 58, 62, 67, 71, 89, 96, 97, 109, 125, 126, 132, 148, 160, 164, 170], "problem": [4, 5, 7, 16, 17, 18, 19, 22, 26, 27, 29, 30, 31, 38, 39, 42, 45, 48, 49, 62, 66, 70, 71, 72, 75, 78, 82, 85, 87, 88, 93, 95, 96, 99, 102, 104, 107, 111, 116, 119, 120, 122, 123, 126, 130, 132, 136, 137, 140, 142, 144, 148, 149, 150, 151, 152, 153, 154, 161, 165], "algorithm": [4, 7, 19, 27, 34, 41, 42, 48, 56, 88, 94, 96, 97, 104, 108, 115, 127, 140, 142, 148, 150, 152, 164], "brief": [4, 59, 141, 151], "subroutin": [4, 6, 9, 16, 24, 34, 36, 67, 115, 123, 140, 148, 149, 161, 167, 170], "equat": [4, 5, 16, 17, 18, 27, 38, 39, 48, 49, 52, 64, 68, 82, 87, 88, 89, 91, 96, 97, 98, 101, 104, 105, 106, 118, 120, 123, 125, 127, 128, 140, 148, 150, 151, 152, 154, 162, 167, 170], "solv": [4, 5, 8, 16, 17, 18, 19, 22, 28, 38, 39, 49, 52, 60, 62, 64, 87, 89, 91, 94, 96, 101, 102, 105, 118, 128, 140, 141, 148, 162, 167, 170], "adapt": [4, 7, 17, 19, 32, 42, 49, 56, 57, 70, 71, 78, 88, 115, 127, 130, 132, 140, 142, 147, 148, 149, 151, 167], "mesh": [4, 7, 17, 19, 35, 49, 56, 70, 71, 78, 81, 88, 115, 130, 147, 148, 167], "amrclaw": [4, 5, 6, 12, 15, 16, 19, 21, 22, 24, 25, 26, 30, 38, 39, 41, 42, 44, 46, 47, 48, 50, 56, 59, 60, 61, 62, 64, 70, 71, 76, 77, 78, 85, 96, 97, 105, 111, 112, 115, 116, 139, 140, 142, 145, 146, 148, 151, 156, 157, 160, 161, 165], "detail": [4, 5, 10, 16, 24, 25, 27, 28, 30, 31, 32, 34, 36, 38, 39, 41, 44, 47, 50, 52, 55, 58, 61, 62, 64, 65, 66, 70, 71, 75, 78, 82, 86, 91, 92, 93, 94, 96, 97, 98, 99, 100, 101, 102, 104, 114, 115, 116, 120, 125, 127, 132, 135, 140, 142, 147, 148, 151, 153, 158, 162, 165, 166, 167, 170], "content": [4, 6, 25, 37, 45, 55, 59, 77, 78, 89, 96, 151, 162, 167, 168], "routin": [4, 5, 6, 16, 18, 19, 22, 27, 29, 32, 34, 38, 39, 47, 48, 49, 50, 55, 56, 66, 71, 72, 76, 77, 78, 81, 84, 86, 89, 91, 94, 97, 100, 101, 104, 106, 107, 115, 118, 119, 120, 123, 125, 127, 128, 130, 140, 144, 148, 150, 152, 158, 164, 165, 167, 168, 170], "special": [4, 7, 16, 48, 50, 55, 65, 78, 86, 97, 115, 135, 142, 164], "depth": [4, 5, 16, 17, 18, 19, 24, 32, 34, 35, 37, 42, 47, 48, 49, 52, 68, 72, 75, 81, 83, 141, 143, 144, 151, 162], "averag": [4, 6, 15, 17, 18, 19, 34, 42, 48, 49, 52, 53, 57, 71, 72, 102, 106, 120, 132, 140, 144, 145, 162, 164, 167], "geophys": [4, 16, 17, 25, 48, 52, 78, 148], "flow": [4, 16, 17, 25, 34, 35, 48, 50, 52, 78, 96, 113, 118, 130, 135, 140, 148, 151, 162, 167], "geoclaw": [4, 7, 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44, 45, 47, 48, 52, 55, 57, 58, 59, 66, 67, 68, 70, 71, 72, 76, 77, 81, 82, 84, 95, 96, 97, 98, 99, 101, 102, 104, 105, 109, 111, 115, 116, 118, 119, 124, 127, 132, 133, 135, 137, 139, 142, 148, 149, 150, 151, 152, 160, 161, 162, 164, 169], "3": [4, 6, 7, 15, 16, 19, 22, 24, 26, 27, 32, 34, 35, 36, 39, 41, 45, 47, 48, 55, 57, 59, 62, 63, 68, 71, 72, 75, 77, 82, 84, 85, 88, 91, 92, 94, 97, 98, 99, 102, 103, 104, 106, 110, 111, 115, 125, 127, 130, 136, 138, 140, 142, 145, 148, 149, 150, 151, 152, 160, 161, 162, 164, 167, 170], "pointer": [4, 16, 18, 19, 58, 75, 81, 84, 104, 109, 123], "code": [4, 5, 6, 7, 8, 12, 14, 16, 21, 22, 23, 24, 25, 26, 29, 31, 34, 35, 36, 37, 38, 39, 41, 43, 44, 45, 47, 48, 49, 52, 54, 56, 57, 58, 60, 65, 66, 67, 68, 74, 75, 76, 77, 78, 80, 82, 84, 85, 86, 88, 89, 94, 96, 97, 98, 99, 101, 104, 105, 108, 110, 111, 114, 117, 118, 119, 120, 123, 124, 125, 126, 127, 128, 129, 130, 132, 137, 139, 140, 141, 142, 146, 148, 149, 150, 151, 152, 153, 158, 160, 161, 162], 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133, 134, 135, 136, 137, 164], "doi": [4, 17, 56, 59, 61, 118, 130, 131, 132, 133, 134, 135, 136, 137, 138], "5281": [4, 59, 118, 130, 131, 132, 133, 134, 135, 136, 137, 138], "zenodo": [4, 61, 118, 130, 131, 132, 133, 134, 135, 136, 137, 138], "10896214": [4, 138], "here": [4, 13, 16, 18, 19, 31, 36, 41, 42, 52, 59, 62, 63, 70, 78, 82, 84, 88, 91, 96, 97, 99, 101, 102, 107, 108, 111, 113, 115, 123, 140, 141, 142, 159, 164, 170], "bibtex": [4, 59], "misc": [4, 129, 131], "url": [4, 12, 17, 55, 59, 127, 128, 162, 164], "year": [4, 17, 24, 55, 63, 96, 117, 128, 158], "releas": [4, 19, 20, 24, 27, 30, 31, 46, 49, 55, 60, 61, 62, 90, 96, 97, 104, 105, 110], "refer": [4, 5, 19, 22, 32, 34, 35, 36, 38, 39, 41, 48, 50, 55, 59, 66, 67, 71, 75, 88, 92, 94, 97, 98, 102, 104, 106, 111, 113, 127, 129, 139, 140, 142, 151, 158, 162, 164, 166, 167], "particular": [4, 6, 12, 22, 24, 30, 32, 34, 44, 47, 48, 50, 52, 55, 56, 59, 65, 66, 67, 71, 78, 82, 83, 85, 86, 88, 102, 103, 104, 106, 108, 113, 114, 115, 116, 118, 120, 123, 124, 125, 126, 127, 129, 130, 132, 147, 158, 159, 170], "obtain": [4, 6, 12, 34, 46, 47, 49, 50, 52, 62, 63, 72, 97, 98, 99, 115, 118, 132, 140, 144, 153, 162, 170], "your": [4, 6, 15, 16, 18, 19, 21, 22, 26, 27, 28, 36, 38, 40, 44, 47, 57, 58, 59, 60, 61, 62, 76, 81, 82, 84, 86, 87, 88, 89, 90, 93, 95, 96, 97, 98, 107, 108, 110, 111, 112, 113, 115, 116, 119, 127, 137, 140, 145, 146, 156, 157, 162, 165, 167], "multipl": [4, 5, 6, 13, 25, 30, 34, 35, 42, 47, 81, 88, 94, 97, 98, 109, 111, 116, 119, 125, 129, 139, 140, 149, 158, 159], "past": [4, 23, 27, 58, 64, 70, 103, 125, 128, 132, 138, 142, 143, 151], "17605": [4, 59, 138], "osf": [4, 138], "io": [4, 58, 59, 85, 98, 103, 138], "kmw6h": [4, 59, 138], "recent": [4, 13, 24, 29, 32, 49, 54, 58, 61, 66, 68, 76, 82, 84, 85, 118, 124, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 140, 154, 166], "articl": [4, 17, 96, 153], "l": [4, 7, 17, 34, 43, 61, 115, 140, 146, 150], "hadjimichael": [4, 17, 86], "2016": 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109, 116, 124, 130, 140, 153, 165], "identifi": [5, 38, 39, 42, 55, 70, 89, 115, 130, 158], "hat": 5, "given": [5, 19, 32, 42, 51, 55, 57, 63, 68, 71, 75, 92, 97, 99, 103, 104, 106, 109, 115, 132, 142, 143, 144, 151, 162, 164, 167], "t_r": 5, "reach": [5, 115, 139], "acoustics_1d_adjoint": 5, "acoustics_2d_adjoint": 5, "main": [5, 11, 12, 19, 21, 30, 42, 46, 58, 59, 70, 71, 78, 89, 91, 97, 101, 108, 109, 116, 118, 126, 135], "subdirectori": [5, 12, 22, 24, 25, 38, 39, 58, 59, 62, 66, 74, 84, 93, 98, 111, 116, 135, 147, 151, 153, 160, 164], "must": [5, 6, 13, 16, 18, 19, 22, 24, 30, 32, 34, 36, 42, 46, 49, 50, 55, 58, 61, 65, 66, 67, 70, 71, 75, 76, 77, 86, 89, 96, 97, 98, 101, 103, 104, 106, 107, 108, 109, 111, 115, 119, 123, 140, 142, 143, 144, 148, 149, 150, 151, 152, 158, 164, 165, 166, 167, 170], "makefil": [5, 6, 11, 14, 15, 16, 21, 22, 25, 27, 30, 36, 38, 39, 44, 58, 76, 78, 82, 84, 89, 95, 96, 115, 118, 119, 123, 125, 127, 128, 130, 136, 144, 145, 148, 150, 151, 152, 153, 156, 157, 162, 165, 167], "coeffici": [5, 68, 101, 102, 104, 106, 107, 108, 140, 151], "matric": [5, 140, 170], "transpos": 5, "vice": 5, "versa": 5, "q_t": [5, 101, 102, 104, 108, 167, 170], "q_x": [5, 102, 108, 170], "_x": [5, 42, 70, 102, 104, 164, 167, 170], "eigenvalu": 5, "unchang": [5, 71], "upon": [5, 106], "transform": [5, 44], "eigenvector": [5, 140, 170], "right": [5, 19, 32, 34, 65, 68, 75, 86, 94, 99, 101, 102, 106, 108, 132, 139, 140, 142, 170], "rp1_acoustics_variable_adjoint": 5, "f90": [5, 9, 15, 18, 19, 22, 33, 34, 36, 42, 47, 49, 56, 66, 67, 76, 77, 85, 101, 112, 115, 119, 123, 125, 127, 128, 129, 130, 132, 133, 136, 140, 141, 144, 145, 154, 156, 157, 162, 165, 167], "boundari": [5, 7, 19, 22, 27, 42, 55, 63, 67, 70, 75, 76, 89, 94, 102, 104, 108, 113, 120, 123, 127, 142, 148, 150, 152], "condit": [5, 7, 19, 22, 27, 65, 67, 78, 86, 87, 88, 89, 91, 98, 104, 112, 119, 120, 123, 127, 143, 148, 150, 151, 152], "adjust": [5, 13, 18, 19, 22, 34, 35, 48, 63, 77, 94, 98, 136, 139, 143, 148, 167], "principl": [5, 164, 167], "vanish": 5, "dure": [5, 24, 34, 42, 47, 63, 75, 78, 119, 143, 144, 150, 151, 152, 154, 162], "integr": [5, 24, 57, 64, 86, 96, 98, 104, 119, 120, 124, 150, 152, 161, 162, 167], "qinit": [5, 22, 24, 42, 48, 66, 67, 89, 132, 143, 144, 167], "setrun": [5, 6, 7, 8, 14, 16, 21, 22, 27, 34, 35, 36, 37, 38, 39, 41, 42, 43, 45, 48, 49, 50, 52, 63, 64, 66, 68, 70, 77, 78, 82, 96, 112, 113, 115, 119, 123, 124, 125, 128, 130, 132, 135, 136, 137, 139, 140, 143, 144, 154, 158, 162, 165, 167], "clawdata": [5, 19, 41, 49, 77, 119, 123, 139, 148, 149, 150, 151, 152], "tfinal": [5, 77, 88, 91, 108, 139, 148, 150, 152], "via": [5, 13, 24, 25, 26, 30, 31, 32, 36, 38, 39, 44, 47, 50, 52, 55, 58, 59, 61, 62, 64, 66, 70, 71, 75, 76, 78, 82, 85, 88, 94, 97, 100, 103, 105, 107, 111, 115, 116, 118, 127, 130, 140, 142, 146, 151, 153, 156, 157, 162, 164, 167], "num_output_tim": [5, 77, 88, 91, 98, 139, 148, 150, 152], "larg": [5, 6, 12, 19, 22, 36, 37, 38, 39, 42, 52, 55, 57, 58, 71, 76, 81, 96, 98, 99, 115, 116, 118, 124, 132, 135, 139, 142, 144, 148, 149, 164, 166], "frequent": [5, 22, 29, 36, 47, 64, 107, 124, 135], "enough": [5, 47, 49, 58, 64, 70, 149, 159, 161, 162], "them": [5, 13, 20, 24, 30, 31, 32, 34, 47, 51, 55, 58, 71, 78, 86, 88, 93, 97, 98, 99, 101, 109, 113, 116, 118, 120, 129, 135, 136, 137, 142, 155, 158, 164, 167], "reason": [5, 19, 49, 52, 55, 63, 75, 76, 78, 99, 101, 115, 148], "output_format": [5, 36, 37, 77, 91, 98, 135, 148, 150, 152], "binari": [5, 36, 44, 47, 59, 65, 86, 98, 100, 124, 135, 136, 139, 148, 164, 168], "manner": [5, 36, 42, 47, 55, 64, 70, 75, 81, 127, 144, 148, 156, 157, 162], "attribut": [5, 7, 18, 24, 32, 36, 37, 41, 47, 70, 75, 81, 83, 84, 88, 91, 94, 97, 99, 101, 103, 104, 115, 118, 119, 124, 128, 136, 139, 147, 148, 149, 151, 158, 164], "clawutil": [5, 11, 14, 21, 22, 25, 30, 43, 44, 54, 59, 60, 61, 66, 111, 116, 146, 148, 149, 150, 152, 164, 165], "clawrundata": [5, 47, 63, 128, 139, 148, 149, 150, 152], "adjointdata": [5, 128, 129], "ia": 5, "attribur": 5, "toler": [5, 34, 102, 109, 115, 116, 125, 149, 150, 151], "rundata": [5, 18, 19, 24, 34, 36, 41, 42, 47, 49, 63, 64, 115, 119, 130, 137, 139, 144, 148, 149, 150, 151, 152, 154], "use_adjoint": 5, "adjoint_outdir": 5, "abspath": [5, 41], "_output": [5, 13, 14, 34, 36, 38, 39, 47, 54, 64, 71, 82, 84, 93, 98, 100, 103, 124, 131, 165], "period": [5, 6, 16, 34, 66, 88, 101, 115, 118, 148, 150, 152], "t1": [5, 41, 47, 63, 64, 115, 132, 149, 150, 151], "t0": [5, 18, 19, 77, 139, 148, 150, 151, 152, 162], "t2": [5, 41, 47, 63, 64, 115, 132, 149, 150, 151], "addit": [5, 7, 13, 16, 17, 19, 25, 26, 30, 31, 34, 36, 39, 40, 41, 48, 49, 50, 63, 70, 75, 77, 78, 82, 83, 89, 92, 94, 96, 98, 104, 105, 106, 113, 115, 118, 123, 125, 126, 127, 128, 131, 132, 134, 135, 136, 140, 142, 148, 152, 158, 161, 162, 167, 168], "aux": [5, 6, 15, 22, 24, 29, 47, 57, 89, 96, 97, 98, 101, 103, 104, 106, 107, 119, 120, 125, 127, 140, 141, 145, 148, 149, 150, 151, 152, 167], "inner": [5, 115, 128], "product": [5, 32, 65, 86, 109, 115, 128], "amrdata": [5, 24, 34, 115, 130, 132, 149, 150, 151], "aux_typ": [5, 149, 150], "append": [5, 22, 34, 36, 41, 42, 47, 55, 64, 82, 91, 103, 115, 124, 125, 137, 139, 140, 150, 151], "num_aux": [5, 89, 97, 99, 101, 102, 106, 140, 148, 149, 150, 152, 167], "len": [5, 32, 37, 94, 150, 152, 164], "innerprod_index": 5, "base": [5, 6, 13, 19, 22, 23, 24, 30, 31, 32, 34, 35, 36, 48, 49, 51, 55, 56, 57, 58, 63, 64, 67, 68, 70, 71, 75, 78, 89, 91, 92, 94, 96, 97, 102, 103, 104, 106, 108, 109, 115, 117, 123, 126, 128, 132, 135, 136, 143, 148, 149, 150, 151, 152, 158, 164, 167, 170], "richardson": [5, 7, 24, 149, 150], "error": [5, 16, 22, 38, 39, 43, 55, 62, 71, 76, 82, 91, 96, 97, 98, 109, 115, 116, 128, 132, 137, 149, 150, 158, 165], "estimat": [5, 150], "flag_richardson": [5, 115, 124, 149, 150], "flag_richardson_tol": [5, 115, 149, 150], "1e": [5, 70, 152], "flag2refin": [5, 7, 24, 149, 150], "flag2refine_tol": [5, 115, 149, 150], "01": [5, 17, 42, 77, 94, 164], "we": [5, 6, 18, 19, 24, 26, 28, 34, 38, 39, 41, 42, 47, 52, 55, 57, 58, 59, 60, 62, 67, 70, 72, 75, 81, 84, 88, 89, 90, 91, 93, 94, 97, 98, 99, 100, 101, 104, 105, 106, 107, 108, 109, 110, 113, 116, 127, 130, 135, 137, 140, 141, 142, 164], "attempt": [5, 8, 11, 22, 35, 38, 39, 66, 97, 103, 109, 116, 119, 133, 158, 164, 165], "estim": [5, 68, 115, 149, 151], "step": [5, 6, 10, 16, 18, 19, 21, 30, 34, 36, 38, 39, 40, 47, 55, 58, 59, 64, 71, 77, 78, 81, 84, 86, 87, 88, 89, 91, 98, 101, 104, 106, 108, 113, 115, 118, 119, 124, 125, 135, 139, 140, 146, 148, 149, 150, 151, 152, 162, 170], "extrapol": [5, 7, 16, 24, 72, 101, 108, 127, 148, 149, 150, 152], "togeth": [5, 16, 30, 31, 32, 58, 60, 75, 115, 135], "experiment": [5, 86], "simpli": [5, 13, 19, 36, 38, 39, 40, 42, 47, 49, 55, 57, 66, 67, 70, 72, 88, 90, 91, 93, 98, 99, 105, 116, 118, 140, 142, 153, 158, 164, 167, 168], "magnitud": [5, 32, 115, 127, 151], "greater": [5, 34, 63, 68, 70, 105, 115, 139, 148, 149, 151], "model": [5, 12, 16, 17, 18, 19, 26, 27, 32, 34, 44, 48, 49, 50, 56, 57, 68, 98, 115, 124, 129, 130, 131, 142, 143, 144, 151, 154, 158, 159, 162], "davisleveque2016": [5, 17], "chile2010_adjoint": 5, "shallow": [5, 15, 16, 17, 18, 19, 27, 34, 36, 42, 48, 49, 52, 56, 70, 78, 89, 96, 112, 118, 120, 121, 123, 125, 127, 128, 136, 137, 140, 144, 145, 151, 156, 157, 162, 167], "water": [5, 16, 17, 18, 19, 27, 36, 42, 47, 48, 49, 50, 51, 52, 63, 70, 78, 81, 89, 96, 118, 120, 121, 125, 127, 128, 137, 140, 142, 143, 144, 151, 162, 164, 166, 167], "while": [5, 13, 16, 19, 32, 42, 55, 71, 75, 82, 84, 89, 94, 98, 99, 104, 109, 127, 140, 144, 151, 166], "suitabl": [5, 8, 16, 18, 19, 22, 48, 52, 55, 73, 77, 103, 114, 140, 143, 158, 164], "To": [5, 6, 13, 14, 18, 19, 20, 24, 27, 30, 31, 38, 39, 40, 41, 42, 43, 47, 50, 53, 55, 56, 59, 66, 69, 70, 71, 75, 76, 77, 82, 84, 85, 88, 90, 92, 93, 96, 97, 98, 99, 100, 101, 104, 105, 108, 111, 113, 114, 115, 116, 118, 123, 125, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 139, 143, 146, 148, 149, 153, 162, 168], "date": [5, 17, 30, 43, 51, 55, 58, 59, 66, 82, 158, 165], "across": [5, 115, 125, 162, 164], "ocean": [5, 16, 17, 19, 34, 49, 52, 55, 113, 115, 142, 151, 156, 157, 162], "wai": [5, 6, 13, 16, 19, 28, 30, 36, 38, 39, 41, 42, 47, 49, 55, 57, 58, 61, 62, 63, 65, 66, 82, 84, 85, 86, 88, 91, 93, 94, 99, 101, 103, 105, 108, 110, 111, 113, 114, 119, 125, 126, 127, 130, 137, 138, 140, 142, 147, 148, 155, 159, 162, 167, 169, 170], "target": [5, 62, 82, 89, 101, 130], "possibli": [5, 32, 36, 70, 88, 94, 111, 118, 124, 144], "deep": [5, 49, 70], "amplitud": [5, 125], "compar": [5, 18, 19, 24, 39, 47, 49, 52, 55, 59, 82, 98, 115, 116, 143, 149, 160, 166, 170], "essenti": [5, 57, 71, 104, 151, 162], "rest": [5, 24, 84, 113, 127, 143, 156, 157, 162, 164], "henc": [5, 36, 57, 58, 67, 72, 104, 110, 111, 115, 144], "take": [5, 6, 24, 29, 30, 32, 34, 37, 51, 58, 68, 70, 71, 75, 82, 88, 94, 101, 104, 108, 109, 110, 115, 116, 118, 122, 128, 136, 144, 148, 149, 150, 151, 164, 167, 170], "rpn2_geoclaw_adjoint_qwav": 5, "rpt2_geoclaw_adjoint_qwav": 5, "non": [5, 16, 59, 70, 78, 89, 101, 108, 128, 130, 148, 150, 152, 158, 170], "vector": [5, 24, 88, 92, 98, 106, 127, 135, 140, 141], "split": [5, 6, 76, 94, 97, 104, 123, 124, 132, 148, 149, 150, 152, 161, 167, 170], "flux": [5, 17, 34, 36, 37, 94, 102, 104, 140, 148, 170], "comment": [5, 11, 19, 26, 53, 59, 126, 135, 139], "rpn2": [5, 140], "basic": [6, 10, 12, 27, 32, 38, 40, 48, 61, 70, 71, 88, 94, 96, 97, 98, 102, 104, 116, 140, 141, 158, 170], "strategi": 6, "logic": [6, 16, 17, 34, 132, 151], "rectangular": [6, 7, 16, 17, 32, 34, 37, 41, 42, 48, 50, 63, 70, 94, 115, 127, 130, 135, 149, 151, 162], "too": [6, 19, 51, 55, 58, 59, 118, 124, 142, 150, 152, 154], "portion": [6, 36, 42, 55, 70, 89, 135, 161], "factor": [6, 55, 149, 151, 161, 164], "direct": [6, 8, 16, 24, 32, 34, 36, 38, 39, 47, 49, 51, 55, 59, 63, 65, 66, 71, 75, 76, 82, 86, 91, 101, 108, 115, 126, 140, 148, 149, 151, 164], "anisotrop": [6, 24], "perhap": [6, 12, 19, 34, 42, 47, 58, 82, 106, 109, 115, 142], "section": [6, 13, 16, 36, 38, 39, 42, 44, 49, 50, 52, 58, 59, 67, 71, 81, 84, 96, 116, 132, 139, 148, 151, 164], "cfl": [6, 49, 94, 98, 104, 108, 118, 119, 124, 148, 150, 151, 152], "spatial": [6, 17, 27, 32, 36, 37, 41, 42, 47, 48, 49, 64, 68, 72, 101, 115, 119, 123, 130, 132, 140, 143, 149, 150, 151, 152, 170], "reduc": [6, 16, 36, 42, 49, 55, 118, 124, 126, 135, 170], "thu": [6, 51, 98, 101, 127, 158], "proce": [6, 18, 19, 30, 151], "advanc": [6, 17, 36, 56, 70, 76, 108, 124, 136, 148, 149, 167], "taken": [6, 34, 70, 75, 98, 104, 115, 148, 167], "around": [6, 32, 34, 42, 63, 97, 113, 116, 130, 149, 150, 158, 164, 167], "librari": [6, 13, 15, 16, 18, 19, 22, 24, 27, 29, 30, 34, 36, 38, 39, 44, 47, 49, 56, 63, 66, 76, 77, 78, 86, 92, 97, 99, 104, 109, 111, 112, 115, 125, 130, 144, 145, 149, 156, 157, 165, 167], "bcnamr": [6, 16, 127, 148, 150, 167], "check": [6, 14, 15, 16, 22, 34, 38, 39, 43, 44, 54, 55, 56, 58, 59, 60, 62, 66, 71, 82, 85, 88, 89, 91, 96, 99, 103, 104, 106, 108, 109, 111, 112, 115, 120, 129, 142, 144, 145, 149, 150, 156, 157, 158, 164, 165, 166, 167], "denot": [6, 19, 24, 37, 47, 57, 140, 164], "procedur": [6, 16, 42, 48, 49, 59, 167], "updat": [6, 12, 13, 24, 25, 27, 34, 53, 56, 61, 62, 64, 84, 96, 104, 106, 107, 110, 113, 118, 119, 123, 125, 126, 127, 128, 129, 130, 140, 149, 150, 152, 155, 158, 161, 167], "consist": [6, 27, 34, 36, 51, 55, 59, 63, 99, 110, 125, 135, 136, 140, 142, 151, 162, 167], "replac": [6, 13, 31, 36, 41, 47, 52, 56, 58, 59, 61, 64, 66, 81, 89, 93, 97, 99, 100, 101, 102, 106, 109, 116, 118, 119, 125, 127, 129, 130, 135, 139, 140, 144, 164, 165], "ly": [6, 70], "within": [6, 16, 30, 36, 37, 58, 62, 70, 72, 78, 82, 100, 109, 111, 115, 140, 142, 147, 153, 164], "approxim": [6, 16, 18, 19, 27, 35, 52, 55, 72, 75, 140], "lead": [6, 13, 24, 34, 36, 52, 55, 68, 71, 75, 111, 114, 132, 144, 149], "total": [6, 32, 36, 55, 75, 77, 98, 104, 148, 149, 150, 152, 161], "mass": [6, 98, 118, 154], "restor": 6, "global": [6, 14, 94, 106, 109, 118, 143, 162, 166, 167], "fix": [6, 21, 22, 24, 27, 35, 37, 41, 47, 48, 49, 58, 59, 63, 64, 66, 70, 72, 86, 97, 102, 118, 119, 120, 121, 122, 123, 124, 125, 126, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 141, 148, 150, 152, 164], "up": [6, 13, 19, 24, 30, 31, 32, 34, 36, 38, 39, 42, 43, 47, 48, 55, 58, 59, 63, 66, 70, 71, 75, 77, 82, 88, 89, 91, 93, 95, 96, 97, 99, 104, 105, 108, 111, 113, 115, 116, 118, 123, 124, 127, 130, 132, 137, 142, 144, 147, 150, 152, 161, 162, 165, 166], "style": [6, 24, 30, 32, 36, 41, 53, 55, 70, 73, 82, 86, 91, 127, 151], "olig": [6, 17], "colella": [6, 17], "bergeroliger84": [6, 17], "bergercolella89": [6, 17], "fortran": [6, 9, 11, 13, 14, 19, 22, 25, 29, 30, 32, 34, 35, 36, 37, 38, 47, 48, 50, 57, 60, 62, 66, 67, 68, 72, 76, 77, 78, 81, 84, 86, 88, 89, 91, 94, 96, 97, 99, 101, 102, 104, 105, 106, 109, 111, 118, 123, 124, 125, 127, 128, 129, 135, 136, 140, 141, 146, 149, 150, 151, 152, 158, 160, 161, 162], "written": [6, 11, 27, 32, 34, 36, 37, 43, 47, 62, 63, 64, 65, 75, 77, 78, 82, 86, 95, 96, 97, 101, 125, 140, 148, 149, 150, 151, 152, 158, 164, 167], "ga": [6, 102], "dynam": [6, 22, 32, 36, 52, 75, 78, 149], "merg": [6, 13, 27, 30, 56, 58, 59, 62, 123], "earli": [6, 22, 144], "mjb": [6, 17], "rjl": [6, 17, 111, 129], "fulli": [6, 52, 55, 56, 126, 130, 140, 151, 158, 159], "consid": [6, 42, 52, 62, 70, 89, 111, 146, 153, 164], "adjac": [6, 16, 34, 48, 115, 144, 148], "equival": [6, 47, 56, 57, 63, 64, 77, 129, 135, 162], "copi": [6, 14, 15, 16, 19, 38, 39, 47, 55, 58, 59, 62, 71, 88, 91, 101, 106, 112, 113, 114, 115, 120, 124, 127, 131, 144, 145, 149, 153, 156, 157, 162, 167], "interior": [6, 16, 42, 77, 106], "howev": [6, 13, 16, 18, 19, 24, 34, 38, 39, 42, 44, 49, 50, 52, 55, 62, 65, 67, 70, 72, 75, 76, 77, 86, 89, 96, 115, 116, 125, 127, 129, 143, 144, 147, 151, 161], "lie": [6, 34, 35, 37, 70, 72, 115, 130, 142], "outsid": [6, 16, 41, 63, 70, 130, 142, 144, 162, 164], "li": [6, 16, 34, 37, 72, 115, 142], "along": [6, 14, 16, 19, 26, 29, 32, 34, 42, 47, 55, 58, 61, 75, 77, 111, 115, 118, 123, 138, 139, 142, 144, 151, 166], "unless": [6, 34, 43, 44, 63, 102, 110, 143, 148, 149, 164], "standard": [6, 16, 19, 32, 34, 36, 49, 55, 57, 71, 77, 89, 92, 104, 111, 115, 116, 150, 151, 152, 153, 162, 167, 170], "beyond": [6, 32, 110, 127], "modifi": [6, 9, 14, 15, 16, 18, 19, 22, 24, 29, 34, 38, 39, 42, 47, 48, 58, 59, 62, 64, 66, 71, 74, 82, 89, 92, 94, 96, 101, 111, 112, 113, 114, 115, 122, 124, 125, 126, 127, 132, 142, 144, 145, 148, 150, 151, 152, 156, 157, 162, 164, 167], "damag": [6, 65, 86], "bcn": [6, 16, 152, 167], "nd": [6, 16, 115, 127, 130, 167], "actual": [6, 29, 32, 36, 57, 62, 63, 71, 75, 82, 92, 97, 109, 113, 143, 151], "softwar": [6, 13, 26, 27, 31, 48, 52, 65, 86, 96, 97, 98, 153, 162], "With": [6, 24, 30, 47, 51, 53, 55, 62, 70, 78, 115, 124, 140, 142, 148], "opposit": [6, 16, 97], "side": [6, 16, 19, 20, 34, 55, 58, 68, 75, 97, 116, 118, 135, 136, 137, 140, 170], "everi": [6, 12, 30, 34, 36, 47, 64, 66, 67, 77, 88, 91, 93, 97, 98, 106, 115, 116, 118, 125, 126, 140, 144, 146, 148, 150, 152, 158, 162, 164, 167], "few": [6, 12, 13, 19, 24, 28, 30, 31, 39, 49, 52, 58, 70, 71, 89, 104, 108, 110, 115, 116, 130, 143, 160, 162, 167], "coarsest": [6, 19, 36, 55, 77, 119, 139, 148], "revis": [6, 125], "shock": [6, 17, 52, 104, 115], "accord": [6, 57, 97], "criteria": [6, 7, 24, 27, 34, 70, 106], "cluster": [6, 17, 115, 149, 150], "rigoutsi": 6, "bergerrigoutsis91": [6, 17], "nonoverlap": 6, "rectangl": [6, 7, 27, 32, 36, 70, 75, 115, 130, 164], "balanc": [6, 17, 78, 126, 141, 156, 157], "conflict": [6, 30, 62, 66, 71, 107, 111], "goal": 6, "possibl": [6, 13, 24, 28, 30, 32, 34, 36, 37, 47, 49, 51, 52, 55, 64, 65, 66, 75, 82, 86, 94, 97, 99, 100, 104, 109, 111, 115, 140, 142, 143, 148, 149, 162, 166, 167], "minim": [6, 62, 70, 97, 142, 149, 164], "overhead": [6, 76, 115, 161], "cutoff": [6, 150], "control": [6, 7, 25, 27, 34, 36, 44, 47, 58, 62, 64, 71, 77, 84, 87, 92, 94, 96, 97, 98, 99, 101, 115, 125, 130, 141, 151], "fraction": [6, 13, 32, 115, 148, 167, 170], "7": [6, 14, 31, 34, 36, 41, 42, 47, 51, 58, 64, 68, 70, 77, 82, 85, 94, 105, 111, 115, 132, 138, 142, 143, 144, 149, 150], "70": [6, 36, 55], "realli": [6, 72, 116, 167], "At": [6, 13, 29, 30, 36, 38, 39, 42, 70, 99, 104, 108, 110, 115, 130, 148], "present": [6, 26, 63, 72, 94, 97, 102, 103, 104, 109, 153, 154, 167, 170], "previous": [6, 24, 34, 70, 77, 84, 118, 123, 130, 144], "bilinear": [6, 34, 42, 47, 57, 72, 119, 120, 162], "doxygen": [6, 7, 27, 126], "flowchart": [6, 7, 27], "capabl": [7, 12, 19, 24, 34, 36, 47, 52, 56, 64, 70, 78, 89, 96, 119, 124, 125, 127, 128, 129, 130, 131, 135, 136, 164, 166], "block": [7, 32, 35, 42, 63, 75, 77, 78, 88, 97, 106, 109, 116, 167], "structur": [7, 10, 24, 34, 36, 37, 41, 59, 62, 66, 78, 103, 104, 125, 142, 147, 164], "input": [7, 14, 16, 22, 25, 27, 29, 32, 35, 37, 43, 48, 55, 63, 67, 70, 71, 77, 88, 91, 92, 94, 96, 102, 103, 104, 109, 113, 124, 127, 128, 129, 140, 150, 151, 152, 158, 159, 162, 164, 167], "indic": [7, 16, 19, 22, 24, 27, 31, 32, 34, 36, 41, 42, 44, 47, 48, 55, 57, 59, 62, 67, 71, 72, 80, 84, 94, 98, 99, 102, 104, 108, 111, 115, 116, 125, 130, 132, 140, 141, 148, 149, 150, 151, 152, 154, 162, 164, 167], "tool": [7, 8, 17, 24, 25, 30, 32, 34, 35, 36, 37, 38, 39, 42, 48, 49, 50, 51, 52, 55, 57, 60, 61, 62, 63, 71, 75, 80, 81, 82, 83, 85, 96, 111, 114, 120, 121, 125, 126, 130, 131, 151, 153, 162, 164, 166, 168], "matlab": [7, 24, 27, 38, 39, 80, 81, 82, 100, 110, 118, 127, 130, 131], "deprec": [7, 32, 48, 58, 62, 118, 123, 127, 135, 137, 162, 164], "debug": [7, 18, 44, 66, 77, 81, 98, 106, 111, 116, 135, 148, 150], "flag": [7, 12, 13, 18, 24, 27, 30, 31, 41, 43, 44, 48, 56, 62, 76, 89, 107, 109, 111, 118, 123, 128, 132, 150, 151], "sampl": [7, 8, 14, 17, 18, 27, 31, 36, 44, 47, 48, 51, 55, 64, 75, 111, 116, 135, 139, 142, 148, 149, 162, 164, 167], "ghost": [7, 16, 19, 76, 77, 94, 97, 104, 106, 125, 132, 136, 148, 150, 152, 161, 167, 170], "flagregion": [7, 27, 70, 115, 130, 132, 142, 149, 151], "rule": [7, 13, 27, 63, 70, 89], "convex": [7, 34], "slu": 7, "bounding_box": [7, 35], "mask_outsid": [7, 70], "write": [7, 30, 32, 35, 36, 37, 41, 42, 47, 48, 54, 57, 58, 68, 75, 77, 78, 81, 88, 91, 94, 95, 97, 98, 99, 103, 118, 125, 127, 150, 152, 158, 162, 164], "instanti": [7, 91, 99, 101, 104, 106, 136, 150, 152], "make_kml": 7, "simpl": [7, 31, 38, 39, 41, 48, 59, 72, 75, 89, 96, 101, 102, 104, 109, 114, 116, 164], "select": [7, 12, 13, 15, 16, 30, 34, 42, 70, 97, 98, 104, 112, 115, 119, 126, 130, 138, 145, 148, 151, 156, 157, 166], "continent": [7, 70], "shelf": [7, 70], "guid": [7, 13, 17, 20, 25, 26, 27, 48, 50, 56, 61, 96, 110, 115, 118, 126, 130, 135, 136, 137, 155], "adjoint": [7, 17, 27, 56, 115, 127, 128], "gaug": [7, 27, 34, 36, 48, 49, 63, 72, 94, 95, 106, 113, 119, 123, 124, 125, 126, 127, 130, 135, 139, 143, 147, 150], "extend": [8, 16, 24, 42, 63, 70, 71, 94, 127, 142, 144, 151, 162, 164, 170], "directli": [8, 18, 19, 21, 25, 34, 48, 52, 61, 71, 75, 82, 84, 88, 89, 92, 96, 106, 109, 111, 127, 135, 164, 168], "obviou": [8, 55], "elimin": [8, 24, 70, 89, 111, 127, 151], "gallery_classic_amrclaw": 8, "num_cel": [8, 24, 49, 94, 140, 148, 149, 150, 152], "refinement_ratios_i": [8, 149, 150], "sweep": [8, 140], "transvers": [8, 94, 125, 132, 140, 141, 148, 167, 170], "graph": 9, "understand": [9, 27, 38, 39, 52, 81, 96, 108, 115, 140], "filpatch": [9, 42, 125, 129, 132], "idea": [10, 26, 32, 70, 71, 78, 88, 108, 120, 164, 170], "overal": [10, 88], "who": [10, 12, 21, 24, 26, 34, 44, 52, 60, 118], "gori": 10, "monster": 10, "column": [10, 32, 34, 47, 49, 52, 64, 98, 102, 123, 142, 164], "markup": 11, "languag": [11, 81, 109], "restructur": [11, 58], "text": [11, 58, 59, 63, 77, 91, 97, 104, 123], "sphinx": [11, 25, 27, 59, 126], "covert": 11, "convert_readm": 11, "brows": [11, 26, 45, 55, 71, 153, 167], "insert": [11, 16, 75, 97, 118, 146], "script": [11, 21, 22, 30, 32, 34, 36, 43, 47, 55, 58, 66, 71, 78, 81, 86, 89, 93, 95, 96, 98, 99, 104, 109, 111, 116, 127, 131, 140, 147, 151, 152, 164], "invok": [11, 14, 19, 76, 144, 165], "minor": [11, 19, 55, 58, 98, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 130, 132, 134, 136, 137], "syntax": [11, 61, 146], "highlight": [11, 13], "header": [11, 32, 34, 36, 42, 47, 57, 70, 75, 77, 97, 103, 123, 125, 127, 158, 162, 164], "complex": [12, 19, 36, 41, 94], "archiv": [12, 23, 39, 55, 59, 116, 153, 160, 164, 166], "github": [12, 15, 19, 24, 25, 26, 27, 28, 31, 56, 58, 61, 62, 93, 101, 105, 112, 116, 118, 122, 124, 125, 126, 135, 138, 140, 141, 145, 156, 157, 165], "app": [12, 13, 20, 25, 28, 30, 31, 40, 45, 46, 75, 113, 114, 118, 122, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 141], "com": [12, 13, 19, 25, 26, 28, 30, 31, 51, 56, 58, 59, 61, 62, 97, 99, 101, 105, 122, 124, 125, 126, 135, 138, 141], "fvmbook": [12, 17, 45, 46], "galleri": [12, 17, 27, 34, 36, 38, 39, 40, 45, 48, 49, 59, 80, 81, 93, 96, 110, 116, 122, 126, 153, 160, 167], "anim": [12, 16, 36, 45, 49, 55, 123, 130, 131, 135, 153], "instal": [12, 13, 19, 20, 25, 27, 31, 38, 46, 55, 58, 59, 84, 86, 87, 90, 95, 97, 108, 110, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 146, 169], "collect": [12, 27, 28, 30, 32, 34, 75, 81, 88, 104, 153], "either": [12, 16, 19, 22, 32, 34, 36, 42, 48, 50, 55, 64, 66, 70, 71, 75, 77, 82, 84, 88, 94, 96, 97, 98, 104, 109, 111, 115, 116, 123, 124, 125, 127, 135, 140, 142, 144, 149, 151, 158, 162, 164, 167, 170], "clone": [12, 20, 25, 26, 45, 56, 58, 59, 62, 85, 99, 105, 114, 118, 135, 136, 137, 165], "git": [12, 13, 25, 26, 27, 28, 56, 59, 62, 96, 105, 116, 129], "navig": [12, 31, 58, 153], "green": [12, 18, 19, 63, 70, 75, 82, 116, 164], "button": [12, 13, 30, 55, 63, 126], "download": [12, 13, 30, 31, 32, 39, 40, 42, 48, 55, 59, 61, 62, 93, 99, 105, 127, 128, 138, 160, 164, 165, 166], "zip": [12, 55, 59], "illustr": [12, 27, 32, 34, 38, 46, 48, 49, 55, 70, 71, 75, 77, 114, 122, 123, 127, 129, 140, 142, 153, 154, 164], "variou": [12, 19, 22, 24, 32, 36, 41, 46, 52, 58, 71, 72, 75, 82, 84, 94, 108, 110, 111, 115, 125, 140, 147, 151, 154, 158], "visibl": [12, 13, 46, 55, 114, 153], "render": [12, 24, 34, 46, 55, 63, 168], "advantag": [12, 19, 36, 47, 64, 81, 97, 110, 116, 142], "independ": [12, 25, 32, 36, 37], "contact": [12, 93, 96, 105], "u": [12, 13, 16, 26, 31, 34, 36, 37, 51, 52, 59, 60, 62, 64, 86, 93, 96, 102, 105, 106, 107, 108, 113, 126, 140, 149, 152, 158, 166], "storm": [12, 17, 26, 27, 48, 123, 126, 127, 128, 129, 131, 132, 133], "surg": [12, 17, 26, 27, 48, 123, 126, 127, 128, 129, 132, 158], "empti": [12, 36, 47, 103, 106, 109, 111, 118, 148, 151, 158, 164], "gitmodul": 12, "pull": [12, 26, 28, 31, 58, 59, 61, 93, 101, 116, 122, 125, 126, 132, 135, 140], "request": [12, 26, 28, 32, 36, 37, 47, 58, 61, 77, 88, 93, 94, 98, 101, 103, 116, 118, 125, 127, 132, 140, 151, 158, 164], "init": [12, 27, 30, 42, 48, 56, 59, 61, 143, 151], "leav": [12, 13, 16, 47, 62, 149, 164], "off": [12, 13, 47, 52, 55, 63, 71, 84, 91, 98, 115, 135, 149, 164], "won": [12, 13, 70, 89, 164], "hurt": [12, 67], "maintain": [12, 30, 110, 127, 149, 162, 167], "flavor": [12, 23, 97], "demonstr": [12, 27, 93, 99], "agre": [12, 30, 42, 57, 140, 161, 164, 167], "seen": [12, 24, 34, 38, 39, 40, 52, 76, 101, 148, 153], "cloud": 13, "elast": [13, 75], "sign": [13, 26, 82, 132, 158], "account": [13, 26, 30, 59, 90, 99, 139], "750": 13, "free": [13, 55, 66, 75, 86, 90, 101, 105, 107], "micro": 13, "suffici": [13, 16, 18, 19, 22, 36, 47, 75, 76, 77, 113, 119, 135, 148, 151], "tier": 13, "inform": [13, 14, 24, 27, 34, 35, 37, 38, 39, 49, 50, 51, 52, 53, 54, 62, 67, 77, 82, 83, 84, 88, 89, 94, 96, 98, 99, 100, 102, 103, 109, 111, 124, 127, 128, 130, 136, 138, 139, 140, 143, 146, 148, 149, 151, 158, 161, 162, 165, 166, 167, 168], "uw": [13, 26], "escienc": 13, "aw": 13, "tutori": [13, 31, 59, 84, 87, 91, 96, 105, 111, 114], "gear": 13, "faq": [13, 27, 81], "price": 13, "charg": 13, "per": [13, 32, 37, 47, 49, 55, 63, 71, 76, 97, 149], "thereof": 13, "regardless": [13, 37, 42, 70, 115, 148], "cpu": [13, 56, 124, 127, 129, 161], "consol": [13, 98, 151], "tab": [13, 58, 138], "east": [13, 162], "cheaper": 13, "rate": 13, "menu": [13, 20, 27, 58, 63, 118, 126, 135, 136, 137, 138, 143, 166], "imag": [13, 38, 39, 42, 59, 63, 70, 116, 127, 142], "platform": [13, 55, 91, 99, 110, 116], "finish": [13, 82, 88], "load": [13, 63, 98, 100, 103, 109, 116, 164, 168], "databas": [13, 32, 75, 109, 113, 127, 162], "uwamath": 13, "bar": [13, 58, 158], "screen": [13, 30, 55, 63, 91, 98, 99, 124, 150, 152], "shapshot": 13, "machin": [13, 27, 76, 78, 116, 125, 146], "disk": [13, 47, 88, 97, 98, 116, 125], "ubuntu": 13, "linux": [13, 74, 85, 107, 116, 146], "popup": 13, "look": [13, 14, 24, 27, 30, 32, 42, 55, 58, 59, 63, 71, 82, 84, 89, 94, 99, 103, 104, 108, 109, 111, 116, 120, 127, 136, 142, 148, 149, 151, 161, 164, 165], "sort": [13, 42, 127, 147, 165], "larger": [13, 22, 34, 49, 55, 63, 75, 76, 77, 82, 94, 119, 125, 132, 149, 151, 162], "cost": [13, 104], "continu": [13, 24, 30, 32, 51, 53, 58, 86, 110, 118, 140, 148, 170], "eventu": [13, 48, 130], "don": [13, 29, 30, 58, 59, 82, 97, 98, 99, 105, 116, 150, 165], "pair": [13, 51, 97, 116, 164], "secur": 13, "quick": [13, 27, 39, 48, 50, 60, 85, 116, 160], "close": [13, 42, 55, 58, 63, 70, 71, 97, 115, 118, 130, 149, 158], "back": [13, 29, 31, 58, 59, 126], "statu": [13, 30, 54, 91, 108], "wait": 13, "until": [13, 34, 64, 70, 137, 144], "refresh": [13, 47], "bottom": [13, 15, 19, 32, 38, 39, 48, 52, 68, 70, 75, 88, 101, 102, 125, 126, 145, 156, 157], "scroll": 13, "down": [13, 32, 98, 124, 158, 162, 164], "dn": 13, "screenshot": [13, 55], "rjlkei": 13, "pem": 13, "abl": [13, 58, 111], "ssh": [13, 30], "keypair": 13, "50": [13, 17, 34, 51, 55, 72, 104, 120, 150], "19": [13, 17, 26, 133, 134, 138, 161], "75": [13, 17, 92, 108, 142], "229": 13, "amazonaw": 13, "gfortran": [13, 62, 76, 85, 87, 107, 118, 146, 165], "ipython": [13, 78, 82, 84, 89, 90, 96, 98, 105, 108, 111, 123, 124], "scipi": [13, 37, 89, 110, 137, 158, 164], "netcdf": [13, 37, 44, 48, 124, 127, 129, 131, 158, 164, 166], "apach": 13, "server": [13, 31, 42, 55, 58, 59, 70, 127, 162, 166], "apt": [13, 85], "fetch": [13, 51], "bring": [13, 55, 58, 71, 151], "master": [13, 15, 27, 31, 58, 59, 62, 101, 112, 118, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 141, 145, 156, 157], "make_lib": 13, "compil": [13, 18, 19, 27, 38, 39, 43, 50, 62, 67, 76, 78, 84, 85, 89, 96, 97, 101, 105, 109, 118, 119, 140, 141, 146], "bashrc": [13, 44, 107, 146], "Of": [13, 28, 75, 108, 113, 162], "cours": [13, 28, 34, 47, 50, 64, 75, 99, 100, 108, 110, 113, 151, 162], "tar": [13, 129, 138], "instruct": [13, 19, 20, 26, 27, 38, 39, 42, 55, 56, 58, 59, 88, 90, 96, 99, 105, 108, 111, 118, 126, 133, 135, 136, 137, 138, 139, 165], "window": [13, 32, 71, 84, 146], "respons": [13, 52, 88, 103], "pretti": 13, "slow": [13, 55, 98, 107], "_plot": [13, 38, 39, 47, 71, 84, 118, 147, 153], "local": [13, 17, 19, 22, 27, 30, 55, 58, 63, 66, 67, 71, 92, 94, 101, 106, 125, 127, 136, 144, 162, 164, 167], "sftp": 13, "much": [13, 19, 30, 34, 36, 44, 49, 55, 77, 78, 81, 85, 110, 115, 119, 123, 130, 135, 136, 142, 148, 151, 161, 164], "smaller": [13, 36, 55, 68, 78, 94, 98, 119, 135, 144, 148, 150, 151, 152, 164], "quicker": [13, 142], "browser": [13, 30, 31, 38, 39, 55, 58, 153], "explain": [13, 19, 34, 52, 70, 132, 148, 153], "webserv": 13, "inbound": 13, "port": [13, 31, 95, 96, 101, 149], "22": [13, 26, 149, 164], "80": [13, 17, 55, 99, 142], "drop": [13, 18, 19, 58, 85, 130, 132, 144, 148], "tcp": 13, "Then": [13, 16, 30, 31, 32, 36, 47, 58, 59, 60, 67, 70, 75, 76, 84, 88, 91, 99, 105, 106, 107, 111, 118, 140, 142, 164, 165], "someth": [13, 29, 30, 58, 66, 74, 81, 98, 103, 104, 111, 118, 162, 165, 167], "shot": 13, "ln": 13, "expos": [13, 78], "home": [13, 31, 32, 62, 146], "scp": 13, "TO": [13, 65, 86], "send": [13, 26, 101, 140], "remot": [13, 55, 59, 127, 164, 166], "rel": [13, 18, 19, 22, 32, 43, 50, 52, 55, 75, 76, 82, 96, 109, 111, 116, 118, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 143, 149, 151, 153, 162, 166], "end": [13, 31, 32, 34, 35, 36, 47, 51, 55, 59, 63, 91, 98, 102, 108, 110, 113, 115, 118, 124, 125, 127, 139, 141, 142, 150, 152, 158, 161], "retriev": [13, 37, 51, 84, 89, 104, 164, 166], "sit": 13, "idl": 13, "action": [13, 14, 89], "restart": [13, 27, 47, 77, 84, 96, 118, 124, 125, 126, 127, 129, 132, 136, 148, 150, 152], "later": [13, 36, 37, 42, 54, 55, 62, 84, 104, 139], "But": [13, 19, 34, 42, 55, 72, 82, 107, 120, 127, 144, 146], "futur": [13, 24, 27, 28, 38, 39, 42, 49, 52, 57, 63, 68, 88, 104, 110, 124, 125, 127, 130, 136, 149, 158, 162], "job": [13, 134], "eb": 13, "runclaw": [14, 54, 118, 120, 129, 131, 137, 140], "autom": [14, 58, 89, 116], "certain": [14, 34, 48, 61, 70, 98, 115, 124, 142, 148], "keep": [14, 27, 30, 34, 35, 37, 38, 39, 76, 88, 91, 96, 106, 109, 116, 120], "log": [14, 27, 30, 31, 94, 95, 96, 103, 104], "came": 14, "rundir": [14, 91], "environ": [14, 18, 19, 27, 30, 38, 39, 40, 43, 54, 55, 58, 61, 62, 71, 74, 76, 78, 100, 107, 109, 111, 125, 164, 165], "noth": [15, 64, 106, 128, 145, 156, 157, 164, 167], "rememb": [15, 29, 76, 82, 99, 145, 156, 157], "b4step1": [15, 67, 167], "b4step2": [15, 145, 167], "b4step3": 15, "branch": [15, 20, 27, 31, 44, 54, 56, 59, 61, 62, 112, 116, 118, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 145, 156, 157], "tag": [15, 55, 59, 61, 112, 145, 149, 150, 156, 157], "bathymetri": [15, 48, 52, 55, 63, 102, 113, 125, 127, 141, 143, 145, 151, 162, 164], "area": [15, 24, 48, 104, 113, 125, 144, 145], "dy": [15, 51, 57, 63, 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"changes-to-riemann"], [136, "changes-to-riemann"], [137, "changes-to-riemann"]], "Changes to amrclaw": [[20, "changes-to-amrclaw"], [118, "changes-to-amrclaw"], [119, "changes-to-amrclaw"], [120, "changes-to-amrclaw"], [121, "changes-to-amrclaw"], [122, "changes-to-amrclaw"], [123, "changes-to-amrclaw"], [124, "changes-to-amrclaw"], [125, "changes-to-amrclaw"], [126, "changes-to-amrclaw"], [127, "changes-to-amrclaw"], [128, "changes-to-amrclaw"], [129, "changes-to-amrclaw"], [130, "changes-to-amrclaw"], [131, "changes-to-amrclaw"], [132, "changes-to-amrclaw"], [133, "changes-to-amrclaw"], [134, "changes-to-amrclaw"], [135, "changes-to-amrclaw"], [136, "changes-to-amrclaw"], [137, "changes-to-amrclaw"]], "Changes to geoclaw": [[20, "changes-to-geoclaw"], [118, "changes-to-geoclaw"], [119, "changes-to-geoclaw"], [120, "changes-to-geoclaw"], [121, "changes-to-geoclaw"], [122, "changes-to-geoclaw"], [123, "changes-to-geoclaw"], [124, "changes-to-geoclaw"], [125, "changes-to-geoclaw"], [126, "changes-to-geoclaw"], [127, "changes-to-geoclaw"], [128, "changes-to-geoclaw"], [129, "changes-to-geoclaw"], [130, "changes-to-geoclaw"], [131, "changes-to-geoclaw"], [132, "changes-to-geoclaw"], [133, "changes-to-geoclaw"], [134, "changes-to-geoclaw"], [135, "changes-to-geoclaw"], [136, "changes-to-geoclaw"], [137, "changes-to-geoclaw"]], "Changes to PyClaw": [[20, "changes-to-pyclaw"], [117, "changes-to-pyclaw"], [118, "changes-to-pyclaw"], [119, "changes-to-pyclaw"], [120, "changes-to-pyclaw"], [121, "changes-to-pyclaw"], [122, "changes-to-pyclaw"], [123, "changes-to-pyclaw"], [124, "changes-to-pyclaw"], [125, "changes-to-pyclaw"], [126, "changes-to-pyclaw"], [127, "changes-to-pyclaw"], [128, "changes-to-pyclaw"], [129, "changes-to-pyclaw"], [130, "changes-to-pyclaw"], [131, "changes-to-pyclaw"], [132, "changes-to-pyclaw"], [133, "changes-to-pyclaw"], [134, "changes-to-pyclaw"], [135, "changes-to-pyclaw"], [136, "changes-to-pyclaw"], [137, "changes-to-pyclaw"]], "Other Clawpack Repositories": [[20, "other-clawpack-repositories"], [118, "other-clawpack-repositories"], [126, "other-clawpack-repositories"], [127, "other-clawpack-repositories"], [128, "other-clawpack-repositories"], [129, "other-clawpack-repositories"], [130, "other-clawpack-repositories"], [131, "other-clawpack-repositories"], [132, "other-clawpack-repositories"], [133, "other-clawpack-repositories"], [134, "other-clawpack-repositories"], [135, "other-clawpack-repositories"], [136, "other-clawpack-repositories"], [137, "other-clawpack-repositories"]], "Converting from Clawpack 4.3 to 4.6": [[21, "converting-from-clawpack-4-3-to-4-6"]], "Converting from Clawpack 4.6 to 5.0": [[22, "converting-from-clawpack-4-6-to-5-0"]], "Python conversion tool": [[22, "python-conversion-tool"]], "Clawpack 4.x links": [[23, "clawpack-4-x-links"]], "Changes in Clawpack 5.0": [[24, "changes-in-clawpack-5-0"]], "PyClaw in 5.0": [[24, "pyclaw-in-5-0"]], "Fortran package changes": [[24, "fortran-package-changes"]], "Changes to input parameters in setrun.py from 4.x to 5.0": [[24, "changes-to-input-parameters-in-setrun-py-from-4-x-to-5-0"]], "Changes to general parameters": [[24, "changes-to-general-parameters"]], "Changes to AMR parameters": [[24, "changes-to-amr-parameters"]], "Changes to GeoClaw parameters": [[24, "changes-to-geoclaw-parameters"]], "Changes to plotting routines": [[24, "changes-to-plotting-routines"]], "Clawpack components": [[25, "clawpack-components"]], "Other repositories": [[25, "other-repositories"]], "Clawpack Community": [[26, "clawpack-community"]], "User Workshops, Clinics, and Tutorials": [[26, "user-workshops-clinics-and-tutorials"]], "Available for streaming": [[26, "available-for-streaming"]], "Upcoming": [[26, "upcoming"], [26, "id1"]], "Recent": [[26, "recent"]], "Developer Workshops and Sprint Sessions": [[26, "developer-workshops-and-sprint-sessions"]], "Previous": [[26, "previous"]], "Other Clawpack events": [[26, "other-clawpack-events"]], "Contents": [[27, "id1"], [30, "contents"], [42, "contents"], [70, "contents"], [82, "contents"], [88, "contents"], [98, "contents"], [104, "contents"], [116, "contents"], [142, "contents"]], "Full Table of Contents": [[27, "full-table-of-contents"]], "Overview and Getting Started": [[27, "overview-and-getting-started"]], "Examples and Applications": [[27, "examples-and-applications"]], "Classic, AMRClaw, and GeoClaw": [[27, "classic-amrclaw-and-geoclaw"]], "Using the Fortran codes": [[27, "using-the-fortran-codes"]], "AMRClaw: adaptive mesh refinement": [[27, "amrclaw-adaptive-mesh-refinement"]], "GeoClaw: geophysical flows": [[27, "geoclaw-geophysical-flows"]], "PyClaw": [[27, "pyclaw"], [38, "pyclaw"], [96, "pyclaw"], [116, "pyclaw"], [160, "pyclaw"]], "Riemann": [[27, "riemann"]], "VisClaw: Plotting and Visualization Tools": [[27, "visclaw-plotting-and-visualization-tools"]], "Migrating applications from older versions of Clawpack": [[27, "migrating-applications-from-older-versions-of-clawpack"]], "Developers\u2019 resources": [[27, "developers-resources"]], "References": [[27, "references"], [56, "references"]], "Contributing examples and applications": [[28, "contributing-examples-and-applications"]], "current_data": [[29, "current-data"]], "Attributes of current_data:": [[29, "attributes-of-current-data"]], "Developers\u2019 Guide": [[30, "developers-guide"]], "Guidelines for contributing": [[30, "guidelines-for-contributing"]], "Reporting and fixing bugs": [[30, "reporting-and-fixing-bugs"]], "Developer communication": [[30, "developer-communication"]], "Installation instructions for developers": [[30, "installation-instructions-for-developers"]], "Cloning the most recent code from Github": [[30, "cloning-the-most-recent-code-from-github"]], "Checking out the master branch on each repository": [[30, "checking-out-the-master-branch-on-each-repository"]], "Updating to the latest master branch": [[30, "updating-to-the-latest-master-branch"]], "Never commit to master": [[30, "never-commit-to-master"]], "Adding your fork as a remote": [[30, "adding-your-fork-as-a-remote"]], "Modifying code": [[30, "modifying-code"]], "Issuing a pull request": [[30, "issuing-a-pull-request"]], "Testing a pull request": [[30, "testing-a-pull-request"]], "Top-level pull requests": [[30, "top-level-pull-requests"]], "Git workflow": [[30, "git-workflow"]], "Catching errors with Pyflakes and Pylint": [[30, "catching-errors-with-pyflakes-and-pylint"]], "Checking test coverage": [[30, "checking-test-coverage"]], "Trouble-Shooting Tips": [[30, "trouble-shooting-tips"]], "Docker for Clawpack": [[31, "docker-for-clawpack"]], "Using Version 5.9.0 or above": [[31, "using-version-5-9-0-or-above"]], "Getting started": [[31, "getting-started"]], "Stopping a container": [[31, "stopping-a-container"]], "Restarting a container": [[31, "restarting-a-container"]], "Running Jupyter notebooks": [[31, "running-jupyter-notebooks"]], "Moving files between the docker container and the host machine": [[31, "moving-files-between-the-docker-container-and-the-host-machine"]], "Some other useful docker commands": [[31, "some-other-useful-docker-commands"]], "Creating your own docker image": [[31, "creating-your-own-docker-image"]], "Dockerfiles for binder": [[31, "dockerfiles-for-binder"]], "dtopotools module for moving topography": [[32, "dtopotools-module-for-moving-topography"]], "Documentation auto-generated from the module docstrings": [[32, "module-clawpack.geoclaw.dtopotools"], [35, "module-clawpack.geoclaw.fgmax_tools"], [37, "module-clawpack.geoclaw.fgout_tools"], [51, "module-clawpack.geoclaw.util"], [63, "module-clawpack.geoclaw.kmltools"], [164, "module-clawpack.geoclaw.topotools"]], "Fortran 77 vs. Fortran 90 files": [[33, "fortran-77-vs-fortran-90-files"]], "Fixed grid monitoring (fgmax)": [[34, "fixed-grid-monitoring-fgmax"]], "Input file specification": [[34, "input-file-specification"], [36, "input-file-specification"]], "Different point styles": [[34, "different-point-styles"]], "Other attributes": [[34, "other-attributes"]], "Values to monitor": [[34, "values-to-monitor"]], "Choice of interpolation procedure": [[34, "choice-of-interpolation-procedure"], [36, "choice-of-interpolation-procedure"]], "A simple example": [[34, "a-simple-example"], [36, "a-simple-example"]], "Processing and plotting fgmax output": [[34, "processing-and-plotting-fgmax-output"]], "Format of the output files": [[34, "format-of-the-output-files"]], "fgmax examples": [[34, "fgmax-examples"]], "fgmax_tools module for working with fgmax grids": [[35, "fgmax-tools-module-for-working-with-fgmax-grids"]], "Fixed grid output (fgout)": [[36, "fixed-grid-output-fgout"]], "Format of fgout output": [[36, "format-of-fgout-output"]], "Using setplot.py to produce plots": [[36, "using-setplot-py-to-produce-plots"]], "Reading and plotting fgout arrays directly": [[36, "reading-and-plotting-fgout-arrays-directly"]], "fgout grid registration": [[36, "fgout-grid-registration"]], "fgout examples": [[36, "fgout-examples"]], "fgout_tools module for working with fgout grids": [[37, "fgout-tools-module-for-working-with-fgout-grids"]], "Running an example": [[38, "running-an-example"], [39, "running-an-example"], [40, "running-an-example"]], "Classic": [[38, "classic"], [39, "classic"], [160, "classic"]], "Testing your Fortran installation and running an example": [[39, "testing-your-fortran-installation-and-running-an-example"]], "More examples": [[39, "more-examples"]], "Testing a PyClaw installation and running an example": [[40, "testing-a-pyclaw-installation-and-running-an-example"]], "From the Jupyter notebook": [[40, "from-the-jupyter-notebook"]], "From the IPython interpreter": [[40, "from-the-ipython-interpreter"]], "From the command line": [[40, "from-the-command-line"], [93, "from-the-command-line"]], "Specifying flagregions for adaptive refinement": [[41, "specifying-flagregions-for-adaptive-refinement"]], "Using ruled rectangles as flagregions": [[41, "using-ruled-rectangles-as-flagregions"]], "Force Cells to be Dry Initially": [[42, "force-cells-to-be-dry-initially"]], "Sample topography from a 1/3 arcsecond DEM": [[42, "sample-topography-from-a-1-3-arcsecond-dem"], [70, "sample-topography-from-a-1-3-arcsecond-dem"]], "Creating the force_dry_init array": [[42, "creating-the-force-dry-init-array"]], "Create file to read into GeoClaw": [[42, "create-file-to-read-into-geoclaw"]], "Usage in GeoClaw Fortran code": [[42, "usage-in-geoclaw-fortran-code"]], "Internal GeoClaw modifications": [[42, "internal-geoclaw-modifications"]], "Fortran version": [[43, "fortran-version"]], "Makefiles": [[43, "makefiles"]], "More tips": [[43, "more-tips"]], "Fortran Compilers": [[44, "fortran-compilers"]], "FC environment variable": [[44, "fc-environment-variable"]], "FFLAGS environment variable": [[44, "fflags-environment-variable"]], "LFLAGS environment variable": [[44, "lflags-environment-variable"]], "Pre-Processor and the PPFLAGS environment variable": [[44, "pre-processor-and-the-ppflags-environment-variable"]], "gfortran compiler": [[44, "gfortran-compiler"]], "Intel fortran compiler": [[44, "intel-fortran-compiler"]], "Examples from the book FVMHP": [[45, "examples-from-the-book-fvmhp"]], "Available examples": [[45, "available-examples"]], "YouTube Videos": [[45, "youtube-videos"]], "Clawpack Gallery": [[46, "clawpack-gallery"]], "Gauges": [[47, "gauges"]], "Gauge parameters in setrun": [[47, "gauge-parameters-in-setrun"]], "Plotting tools": [[47, "plotting-tools"]], "Plotting gauge locations": [[47, "plotting-gauge-locations"]], "GeoClaw Description and Detailed Contents": [[48, "geoclaw-description-and-detailed-contents"]], "GeoClaw in One Space Dimension": [[49, "geoclaw-in-one-space-dimension"]], "Coordinate systems": [[49, "coordinate-systems"]], "Uniform and mapped grids": [[49, "uniform-and-mapped-grids"]], "Topograpy data": [[49, "topograpy-data"]], "Moving topograpy (dtopo) data": [[49, "moving-topograpy-dtopo-data"]], "Getting started with GeoClaw": [[50, "getting-started-with-geoclaw"]], "Running a GeoClaw code": [[50, "running-a-geoclaw-code"]], "Topography": [[50, "topography"]], "Plotting GeoClaw results": [[50, "plotting-geoclaw-results"]], "Setting up a new example": [[50, "setting-up-a-new-example"]], "geoclaw.util module of utility functions": [[51, "geoclaw-util-module-of-utility-functions"]], "Cautionary Hints on using GeoClaw": [[52, "cautionary-hints-on-using-geoclaw"]], "Tsunami hazard modeling": [[52, "tsunami-hazard-modeling"]], "GeoClaw plotting tools": [[53, "geoclaw-plotting-tools"]], "Plotting water depth or surface elevation": [[53, "plotting-water-depth-or-surface-elevation"]], "Tips on latitude-longitude coordinate axes": [[53, "tips-on-latitude-longitude-coordinate-axes"]], "Keeping track of repository versions with Git": [[54, "keeping-track-of-repository-versions-with-git"]], "Visualizing GeoClaw results in Google Earth": [[55, "visualizing-geoclaw-results-in-google-earth"]], "Basic requirements": [[55, "basic-requirements"]], "Optional GDAL library": [[55, "optional-gdal-library"]], "An example : The Chile 2010 tsunami event": [[55, "an-example-the-chile-2010-tsunami-event"]], "Plotting attributes needed for Google Earth": [[55, "plotting-attributes-needed-for-google-earth"]], "plotdata attributes": [[55, "plotdata-attributes"]], "plotfigure attributes": [[55, "plotfigure-attributes"]], "Creating the figures": [[55, "creating-the-figures"]], "plotaxes attributes": [[55, "plotaxes-attributes"]], "plotitem attributes": [[55, "plotitem-attributes"]], "Adding a colorbar overlay": [[55, "adding-a-colorbar-overlay"]], "Gauge plots": [[55, "gauge-plots"]], "Additional plotdata attributes": [[55, "additional-plotdata-attributes"]], "Plotting tips": [[55, "plotting-tips"]], "KML and KMZ files": [[55, "kml-and-kmz-files"]], "Tiling images for faster loading": [[55, "tiling-images-for-faster-loading"]], "Removing aliasing artifacts": [[55, "removing-aliasing-artifacts"]], "Creating multiple figures at different resolutions": [[55, "creating-multiple-figures-at-different-resolutions"]], "Mapping topography data to latitude/longitude coordinates": [[55, "mapping-topography-data-to-latitude-longitude-coordinates"]], "Publishing your results": [[55, "id1"]], "Using the GPU version of Clawpack": [[56, "using-the-gpu-version-of-clawpack"]], "Grid registration": [[57, "grid-registration"]], "NetCDF files": [[57, "netcdf-files"]], "Guide for updating this documentation": [[58, "guide-for-updating-this-documentation"]], "Git branches and tags": [[58, "git-branches-and-tags"]], "Configuration and style files": [[58, "configuration-and-style-files"]], "Updating the docs for a new release": [[58, "updating-the-docs-for-a-new-release"]], "To generate docs including previous versions": [[58, "to-generate-docs-including-previous-versions"]], "Updating for a new major version": [[58, "updating-for-a-new-major-version"]], "Updating the gallery": [[58, "updating-the-gallery"]], "Updating the webpages": [[58, "updating-the-webpages"]], "Extra files for webpages not built by Sphinx": [[58, "extra-files-for-webpages-not-built-by-sphinx"]], "Pages from other clawpack repositories": [[58, "pages-from-other-clawpack-repositories"]], "Guide for doing a Clawpack release": [[59, "guide-for-doing-a-clawpack-release"]], "Preparation": [[59, "preparation"]], "Version numbers": [[59, "version-numbers"]], "Release candidates": [[59, "release-candidates"]], "Create a tar file and a Github release": [[59, "create-a-tar-file-and-a-github-release"]], "Final release": [[59, "final-release"]], "Pypi": [[59, "pypi"]], "Zenodo": [[59, "zenodo"]], "Open Science Framework (OSF)": [[59, "open-science-framework-osf"]], "Updating the documentation": [[59, "updating-the-documentation"]], "Updating the apps repository": [[59, "updating-the-apps-repository"]], "Updating the Dockerfile": [[59, "updating-the-dockerfile"]], "Installing Clawpack": [[60, "installing-clawpack"]], "Next steps:": [[60, "next-steps"], [61, "next-steps"], [62, "next-steps"]], "Options for installing Clawpack Fortran codes": [[61, "options-for-installing-clawpack-fortran-codes"]], "tar file": [[61, "tar-file"]], "git clone": [[61, "git-clone"]], "pip install instructions": [[62, "pip-install-instructions"]], "Quick Installation of PyClaw with pip": [[62, "quick-installation-of-pyclaw-with-pip"]], "Quick Installation of all packages with pip": [[62, "quick-installation-of-all-packages-with-pip"]], "Using pip to install a different version": [[62, "using-pip-to-install-a-different-version"]], "Experimenting with code in the examples directories": [[62, "experimenting-with-code-in-the-examples-directories"]], "Troubleshooting pip install": [[62, "troubleshooting-pip-install"]], "kmltools module of utility functions": [[63, "kmltools-module-of-utility-functions"]], "Lagrangian gauges for particle tracking": [[64, "lagrangian-gauges-for-particle-tracking"]], "Specifying Lagrangian Gauges": [[64, "specifying-lagrangian-gauges"]], "Visclaw tools for plotting": [[64, "visclaw-tools-for-plotting"]], "An alternative using fgout grids": [[64, "an-alternative-using-fgout-grids"]], "Clawpack Makefiles": [[66, "clawpack-makefiles"]], "Applications directory Makefiles": [[66, "applications-directory-makefiles"]], "output": [[66, "output"]], "plots": [[66, "plots"]], "Variables": [[66, "variables"]], "Compiler flags": [[66, "compiler-flags"]], "Duplicate Base Source Name": [[66, "duplicate-base-source-name"]], "Library routines in Makefiles": [[67, "library-routines-in-makefiles"]], "Replacing files with the same name as library files": [[67, "replacing-files-with-the-same-name-as-library-files"]], "Using a modified library routine with a different name": [[67, "using-a-modified-library-routine-with-a-different-name"]], "Manning friction term": [[68, "manning-friction-term"]], "The mapc2p function": [[69, "the-mapc2p-function"]], "Marching Front algorithm": [[70, "marching-front-algorithm"]], "Function arguments": [[70, "function-arguments"]], "output array": [[70, "output-array"]], "creating a masked array": [[70, "creating-a-masked-array"]], "topofile mask for initializing dry points": [[70, "topofile-mask-for-initializing-dry-points"]], "fgmax points": [[70, "fgmax-points"]], "flag regions": [[70, "flag-regions"]], "The mask argument": [[70, "the-mask-argument"]], "The previous_pts_chosen argument": [[70, "the-previous-pts-chosen-argument"]], "Finding all points below a given elevation": [[70, "finding-all-points-below-a-given-elevation"]], "Create a buffer zone along shore": [[70, "create-a-buffer-zone-along-shore"]], "Choose points only near shore": [[70, "choose-points-only-near-shore"]], "Write out the masked array indicating fgmax points": [[70, "write-out-the-masked-array-indicating-fgmax-points"]], "Creating an AMR flag region": [[70, "creating-an-amr-flag-region"]], "Determining dry areas below MHW": [[70, "determining-dry-areas-below-mhw"]], "Plotting using Matlab": [[71, "plotting-using-matlab"]], "The Matlab search path": [[71, "the-matlab-search-path"]], "Creating output files": [[71, "creating-output-files"]], "The plotclaw command": [[71, "the-plotclaw-command"]], "The setplot file": [[71, "the-setplot-file"]], "The afterframe file": [[71, "the-afterframe-file"]], "Getting help": [[71, "getting-help"]], "Trouble shooting": [[71, "trouble-shooting"]], "Output files not found": [[71, "output-files-not-found"]], "MaxFrames not set": [[71, "maxframes-not-set"]], "Switching examples": [[71, "switching-examples"]], "Matlab Gallery": [[71, "matlab-gallery"]], "Nearshore interpolation": [[72, "nearshore-interpolation"]], "Using NetCDF output": [[73, "using-netcdf-output"]], "Creating a new application directory": [[74, "creating-a-new-application-directory"]], "Copying an existing example": [[74, "copying-an-existing-example"]], "Earthquake sources: Fault slip and the Okada model": [[75, "earthquake-sources-fault-slip-and-the-okada-model"]], "Fault slip on rectangular subfaults": [[75, "fault-slip-on-rectangular-subfaults"]], "Okada model": [[75, "okada-model"]], "Kinematic rupture": [[75, "kinematic-rupture"]], "Fault slip on triangular subfaults": [[75, "fault-slip-on-triangular-subfaults"]], "Using OpenMP": [[76, "using-openmp"]], "Using OpenMP with AMR": [[76, "using-openmp-with-amr"]], "Fixed grid output in GeoClaw": [[76, "fixed-grid-output-in-geoclaw"]], "Output data sytles and formats": [[77, "output-data-sytles-and-formats"]], "Output style": [[77, "output-style"]], "Output data formats": [[77, "output-data-formats"]], "ASCII output data format": [[77, "ascii-output-data-format"]], "fort.t0002": [[77, "fort-t0002"]], "fort.q0002": [[77, "fort-q0002"]], "Raw binary output data formats": [[77, "raw-binary-output-data-formats"]], "NetCDF output data format": [[77, "netcdf-output-data-format"]], "Output of aux arrays": [[77, "output-of-aux-arrays"]], "Which Clawpack solver should I use?": [[78, "which-clawpack-solver-should-i-use"]], "Installation and user interface": [[78, "installation-and-user-interface"]], "Algorithmic differences": [[78, "algorithmic-differences"]], "Parallel computing": [[78, "parallel-computing"]], "Clawpack Community Photos": [[79, "clawpack-community-photos"]], "2016 Developers\u2019 workshop at University of Washington": [[79, "id1"]], "2015 Developers\u2019 workshop at University of Utah": [[79, "id2"]], "2014 HPC3 workshop at KAUST": [[79, "id3"]], "2013 Claw-Dev workshop at UW": [[79, "id4"]], "2012 HPC3 workshop at KAUST": [[79, "id6"]], "2011 coding sprints at UW": [[79, "coding-sprints-at-uw"]], "2010 GeoClaw hacking UW": [[79, "geoclaw-hacking-uw"]], "Plotting examples": [[80, "plotting-examples"]], "Plotting with Visclaw": [[81, "plotting-with-visclaw"]], "Plotting as post-processing": [[81, "plotting-as-post-processing"]], "Plotting on the fly": [[81, "plotting-on-the-fly"]], "Plotting hints and FAQ": [[82, "plotting-hints-and-faq"]], "What\u2019s the difference between make .plots and make plots ?": [[82, "what-s-the-difference-between-make-plots-and-make-plots"]], "How to plot a something other than a component of q?": [[82, "how-to-plot-a-something-other-than-a-component-of-q"]], "How to add another curve to a plot, e.g. the true solution?": [[82, "how-to-add-another-curve-to-a-plot-e-g-the-true-solution"]], "How to change the title in a plot?": [[82, "how-to-change-the-title-in-a-plot"]], "How to specify outdir, the directory to find fort.* files for plotting?": [[82, "how-to-specify-outdir-the-directory-to-find-fort-files-for-plotting"]], "How to specify a different outdir for some plot item?": [[82, "how-to-specify-a-different-outdir-for-some-plot-item"]], "How to set plot parameters that are not provided as attributes of ClawPlotItem?": [[82, "how-to-set-plot-parameters-that-are-not-provided-as-attributes-of-clawplotitem"]], "How to change the size or background color of a figure?": [[82, "how-to-change-the-size-or-background-color-of-a-figure"]], "Specifying colormaps for pcolor or contourf plots": [[82, "specifying-colormaps-for-pcolor-or-contourf-plots"]], "How to debug setplot.py?": [[82, "how-to-debug-setplot-py"]], "Plotting routines for GeoClaw": [[83, "plotting-routines-for-geoclaw"]], "Plotting options in Python": [[84, "plotting-options-in-python"]], "Producing html plots from the command line": [[84, "producing-html-plots-from-the-command-line"]], "Producing a latex file with plots from the command line": [[84, "producing-a-latex-file-with-plots-from-the-command-line"]], "Setting plot parameters with a setplot function": [[84, "setting-plot-parameters-with-a-setplot-function"]], "Interactive plotting with Iplotclaw": [[84, "interactive-plotting-with-iplotclaw"]], "Access to current_data": [[84, "access-to-current-data"]], "printframes": [[84, "printframes"]], "Specifying what and how to plot": [[84, "specifying-what-and-how-to-plot"]], "Installation Prerequisites": [[85, "installation-prerequisites"]], "Operating system": [[85, "operating-system"]], "Fortran": [[85, "fortran"]], "Python": [[85, "python"]], "pip": [[85, "pip"]], "Git": [[85, "git"]], "About PyClaw": [[86, "about-pyclaw"]], "Contributors": [[86, "contributors"]], "PyClaw Basics": [[87, "pyclaw-basics"]], "Understanding Pyclaw Classes": [[88, "understanding-pyclaw-classes"]], "Flow of a Pyclaw Simulation": [[88, "flow-of-a-pyclaw-simulation"]], "Creation of a Pyclaw Solution": [[88, "creation-of-a-pyclaw-solution"]], "Creation of a Pyclaw Solver": [[88, "creation-of-a-pyclaw-solver"]], "Creating and Running a Simulation with Controller": [[88, "creating-and-running-a-simulation-with-controller"]], "Restarting a simulation": [[88, "restarting-a-simulation"]], "Outputting aux values": [[88, "outputting-aux-values"]], "Outputting derived quantities": [[88, "outputting-derived-quantities"], [98, "outputting-derived-quantities"]], "Porting a problem from Clawpack 4.6.x to PyClaw": [[89, "porting-a-problem-from-clawpack-4-6-x-to-pyclaw"]], "Running PyClaw in the cloud": [[90, "running-pyclaw-in-the-cloud"]], "Sage Math Cloud": [[90, "sage-math-cloud"]], "Pyclaw Controller Class": [[91, "pyclaw-controller-class"]], "pyclaw.controller.Controller": [[91, "pyclaw-controller-controller"]], "Pyclaw Limiters": [[92, "pyclaw-limiters"]], "clawpack.pyclaw.limiters.tvd": [[92, "module-clawpack.pyclaw.limiters.tvd"]], "CFL Independent Limiters": [[92, "cfl-independent-limiters"]], "CFL Dependent Limiters": [[92, "cfl-dependent-limiters"]], "Working with PyClaw\u2019s built-in examples": [[93, "working-with-pyclaw-s-built-in-examples"]], "Running and plotting examples": [[93, "running-and-plotting-examples"]], "Interactively in IPython": [[93, "interactively-in-ipython"]], "Built-in examples": [[93, "built-in-examples"]], "Adding new examples": [[93, "adding-new-examples"]], "PyClaw Geometry": [[94, "pyclaw-geometry"]], "Serial Geometry Objects": [[94, "serial-geometry-objects"]], "pyclaw.geometry.Domain": [[94, "pyclaw-geometry-domain"]], "pyclaw.geometry.Patch": [[94, "pyclaw-geometry-patch"]], "pyclaw.geometry.Grid": [[94, "pyclaw-geometry-grid"]], "pyclaw.geometry.Dimension": [[94, "pyclaw-geometry-dimension"]], "Parallel Geometry Objects": [[94, "parallel-geometry-objects"]], "petclaw.geometry.Domain": [[94, "petclaw-geometry-domain"]], "petclaw.geometry.Patch": [[94, "petclaw-geometry-patch"]], "Going Further": [[95, "going-further"]], "PyClaw installation": [[96, "pyclaw-installation"]], "Features": [[96, "features"]], "PyClaw Documentation": [[96, "pyclaw-documentation"]], "PyClaw Modules reference documentation": [[96, "pyclaw-modules-reference-documentation"]], "Riemann Solvers reference documentation": [[96, "riemann-solvers-reference-documentation"]], "Indices and tables": [[96, "indices-and-tables"]], "Citing PyClaw": [[96, "citing-pyclaw"]], "Pyclaw Input/Output Package": [[97, "pyclaw-input-output-package"]], "pyclaw.fileio.ascii": [[97, "module-clawpack.pyclaw.fileio.ascii"]], "pyclaw.fileio.binary": [[97, "module-clawpack.pyclaw.fileio.binary"]], "pyclaw.fileio.hdf5": [[97, "module-clawpack.pyclaw.fileio.hdf5"]], "pyclaw.fileio.netcdf": [[97, "module-clawpack.pyclaw.fileio.netcdf"]], "PyClaw output": [[98, "pyclaw-output"]], "Output frames": [[98, "output-frames"]], "When output is saved/written": [[98, "when-output-is-saved-written"]], "Where and how output is written": [[98, "where-and-how-output-is-written"]], "What output is written": [[98, "what-output-is-written"]], "Outputting functionals": [[98, "outputting-functionals"]], "Using gauges": [[98, "using-gauges"]], "Logging": [[98, "logging"]], "Running in parallel": [[99, "running-in-parallel"]], "Installing PETSc": [[99, "installing-petsc"]], "Testing your installation": [[99, "testing-your-installation"], [160, "testing-your-installation"]], "Running and plotting an example": [[99, "running-and-plotting-an-example"]], "Tips for making your application run correctly in parallel": [[99, "tips-for-making-your-application-run-correctly-in-parallel"]], "Passing options to PETSc": [[99, "passing-options-to-petsc"]], "Plotting PyClaw results": [[100, "plotting-pyclaw-results"]], "Basics": [[100, "basics"]], "Plotting result from parallel runs": [[100, "plotting-result-from-parallel-runs"]], "Setting up your own problem": [[101, "setting-up-your-own-problem"]], "Writing the initialization script": [[101, "writing-the-initialization-script"]], "Setting initial conditions": [[101, "setting-initial-conditions"]], "Setting auxiliary variables": [[101, "setting-auxiliary-variables"]], "Setting boundary conditions": [[101, "setting-boundary-conditions"]], "Setting solver options": [[101, "setting-solver-options"]], "Using your own Riemann solver": [[101, "using-your-own-riemann-solver"]], "Adding source terms": [[101, "adding-source-terms"]], "Setting up the Makefile": [[101, "setting-up-the-makefile"]], "Riemann Solver Package": [[102, "riemann-solver-package"]], "Acoustics": [[102, "acoustics"]], "Advection": [[102, "advection"]], "Burgers Equation": [[102, "burgers-equation"]], "Euler Equations": [[102, "euler-equations"]], "Shallow Water Equations": [[102, "shallow-water-equations"]], "PyClaw Solutions": [[103, "pyclaw-solutions"]], "pyclaw.solution.Solution": [[103, "pyclaw-solution-solution"]], "Using PyClaw\u2019s solvers: Classic and SharpClaw": [[104, "using-pyclaw-s-solvers-classic-and-sharpclaw"]], "SharpClaw Solvers": [[104, "sharpclaw-solvers"]], "pyclaw.sharpclaw": [[104, "pyclaw-sharpclaw"]], "Pyclaw Classic Clawpack Solvers": [[104, "pyclaw-classic-clawpack-solvers"]], "pyclaw.classic.solver": [[104, "pyclaw-classic-solver"]], "Change to Custom BC Function Signatures": [[104, "change-to-custom-bc-function-signatures"]], "Installing PyClaw": [[105, "installing-pyclaw"]], "Dependencies: Python, gfortran, numpy, and matplotlib": [[105, "dependencies-python-gfortran-numpy-and-matplotlib"]], "Obtaining Python, numpy, and matplotlib": [[105, "obtaining-python-numpy-and-matplotlib"]], "Clawpack": [[105, "clawpack"]], "Testing your installation with nose": [[105, "testing-your-installation-with-nose"]], "Next steps": [[105, "next-steps"]], "PyClaw State": [[106, "pyclaw-state"]], "Serial pyclaw.state.State": [[106, "serial-pyclaw-state-state"]], "Parallel petclaw.state.State": [[106, "parallel-petclaw-state-state"]], "Troubleshooting": [[107, "troubleshooting"], [165, "troubleshooting"]], "Compilation errors": [[107, "compilation-errors"]], "Use Fortran-ordered arrays": [[107, "use-fortran-ordered-arrays"]], "Installation": [[107, "installation"]], "PyClaw tutorial: Solve the acoustics equations": [[108, "pyclaw-tutorial-solve-the-acoustics-equations"]], "The Solver": [[108, "the-solver"]], "The domain": [[108, "the-domain"]], "Initial condition": [[108, "initial-condition"]], "Problem-specific parameters": [[108, "problem-specific-parameters"]], "The controller": [[108, "the-controller"]], "Pyclaw Utility Module": [[109, "pyclaw-utility-module"]], "pyclaw.util": [[109, "module-clawpack.pyclaw.util"]], "Python Hints": [[110, "python-hints"]], "Dropping support for Python 2.7": [[110, "dropping-support-for-python-2-7"]], "References and tutorials": [[110, "references-and-tutorials"]], "Notebooks": [[110, "notebooks"]], "Python path": [[111, "python-path"]], "whichclaw.py": [[111, "whichclaw-py"]], "Which version was imported?": [[111, "which-version-was-imported"]], "sys.path": [[111, "sys-path"]], "easy-install.pth": [[111, "easy-install-pth"]], "PYTHONPATH": [[111, "pythonpath"], [146, "pythonpath"]], "qinit default routines": [[112, "qinit-default-routines"]], "qinit routine in GeoClaw": [[112, "qinit-routine-in-geoclaw"]], "Quick start guide for storm surge modeling": [[113, "quick-start-guide-for-storm-surge-modeling"]], "Quick start guide for tsunami modeling": [[114, "quick-start-guide-for-tsunami-modeling"]], "AMR refinement criteria": [[115, "amr-refinement-criteria"]], "Flagging criteria": [[115, "flagging-criteria"]], "flag2refine": [[115, "flag2refine"]], "Richardson extrapolation": [[115, "richardson-extrapolation"]], "Specifying AMR regions": [[115, "specifying-amr-regions"]], "Implementation": [[115, "implementation"]], "Flagging criteria in GeoClaw": [[115, "flagging-criteria-in-geoclaw"]], "Regression testing": [[116, "regression-testing"]], "Running the tests": [[116, "running-the-tests"], [116, "id2"]], "Fortran codes": [[116, "fortran-codes"]], "Travis continuous integration": [[116, "travis-continuous-integration"]], "Diff tools for checking test output": [[116, "diff-tools-for-checking-test-output"]], "chardiff tool for line-by-line comparison of output files": [[116, "chardiff-tool-for-line-by-line-comparison-of-output-files"]], "imagediff tool for pixel comparison of plots": [[116, "imagediff-tool-for-pixel-comparison-of-plots"]], "Running and writing tests in PyClaw": [[116, "running-and-writing-tests-in-pyclaw"]], "Running serial tests simultaneously": [[116, "running-serial-tests-simultaneously"]], "Running a specific test": [[116, "running-a-specific-test"]], "Doctests": [[116, "doctests"]], "Writing New Tests": [[116, "writing-new-tests"]], "v5.0.0 release notes": [[117, "v5-0-0-release-notes"]], "Changes to classic, riemann, amrclaw, geoclaw, visclaw": [[117, "changes-to-classic-riemann-amrclaw-geoclaw-visclaw"]], "v5.10.0 release notes": [[118, "v5-10-0-release-notes"]], "v5.1.0 release notes": [[119, "v5-1-0-release-notes"]], "v5.2.0 release notes": [[120, "v5-2-0-release-notes"]], "v5.2.1 release notes": [[121, "v5-2-1-release-notes"]], "v5.2.2 release notes": [[122, "v5-2-2-release-notes"]], "v5.3.0 release notes": [[123, "v5-3-0-release-notes"]], "v5.3.1 release notes": [[124, "v5-3-1-release-notes"]], "v5.4.0 release notes": [[125, "v5-4-0-release-notes"]], "Global changes": [[125, "global-changes"]], "v5.4.1 release notes": [[126, "v5-4-1-release-notes"]], "Changes to documentation": [[126, "changes-to-documentation"], [127, "changes-to-documentation"]], "v5.5.0 release notes": [[127, "v5-5-0-release-notes"]], "v5.6.0 release notes": [[128, "v5-6-0-release-notes"]], "v5.6.1 release notes": [[129, "v5-6-1-release-notes"]], "v5.7.0 release notes": [[130, "v5-7-0-release-notes"]], "Python support": [[130, "python-support"]], "v5.7.1 release notes": [[131, "v5-7-1-release-notes"]], "v5.8.0 release notes": [[132, "v5-8-0-release-notes"]], "v5.8.1 release notes": [[133, "v5-8-1-release-notes"]], "v5.8.2 release notes": [[134, "v5-8-2-release-notes"]], "v5.9.0 release notes": [[135, "v5-9-0-release-notes"]], "v5.9.1 release notes": [[136, "v5-9-1-release-notes"]], "v5.9.2 release notes": [[137, "v5-9-2-release-notes"]], "Releases of Clawpack and release notes": [[138, "releases-of-clawpack-and-release-notes"]], "Other notes:": [[138, "other-notes"]], "Releases:": [[138, "id1"]], "Clawpack 4.x": [[138, "clawpack-4-x"]], "Checkpointing and restarting": [[139, "checkpointing-and-restarting"]], "Checkpointing a computation": [[139, "checkpointing-a-computation"]], "Restarting a computation": [[139, "restarting-a-computation"]], "Modifying the Makefile for a restart": [[139, "modifying-the-makefile-for-a-restart"]], "Output files after a restart": [[139, "output-files-after-a-restart"]], "Riemann solvers": [[140, "riemann-solvers"]], "One-dimensional Riemann solver": [[140, "one-dimensional-riemann-solver"]], "Pointwise Riemann solvers": [[140, "pointwise-riemann-solvers"]], "f-wave Riemann solvers": [[140, "f-wave-riemann-solvers"]], "2D Riemann solvers": [[140, "d-riemann-solvers"]], "Using a custom solver": [[140, "using-a-custom-solver"]], "Adding a solver to the Riemann repository": [[140, "adding-a-solver-to-the-riemann-repository"]], "Shallow water Riemann solvers in Clawpack": [[141, "shallow-water-riemann-solvers-in-clawpack"]], "One dimension": [[141, "one-dimension"]], "Two dimensions": [[141, "two-dimensions"]], "Layered shallow water equations": [[141, "layered-shallow-water-equations"]], "Potentially useful contributions (what\u2019s missing)": [[141, "potentially-useful-contributions-whats-missing"]], "Demonstrations": [[141, "demonstrations"]], "Roe": [[141, "roe"]], "HLL": [[141, "hll"]], "Ruled Rectangles": [[142, "ruled-rectangles"]], "Relation to convex polygons": [[142, "relation-to-convex-polygons"]], "Other attributes and methods": [[142, "other-attributes-and-methods"]], "ds": [[142, "ds"]], "slu": [[142, "slu"]], "bounding_box": [[142, "bounding-box"]], "mask_outside": [[142, "mask-outside"]], "read and write, and instantiating from a file": [[142, "read-and-write-and-instantiating-from-a-file"]], "make_kml": [[142, "make-kml"]], "A GeoClaw AMR flag region": [[142, "a-geoclaw-amr-flag-region"]], "A simple rectangle": [[142, "a-simple-rectangle"]], "Defining a Ruled Rectangle covering selected cells": [[142, "defining-a-ruled-rectangle-covering-selected-cells"]], "Example covering the continental shelf": [[142, "example-covering-the-continental-shelf"]], "Setting sea_level": [[143, "setting-sea-level"]], "Set Eta Init \u2013 spatially varying initial surface elevation": [[144, "set-eta-init-spatially-varying-initial-surface-elevation"]], "Default behavior, adjusting sea level by seismic deformation": [[144, "default-behavior-adjusting-sea-level-by-seismic-deformation"]], "Other use cases": [[144, "other-use-cases"]], "setaux default routines": [[145, "setaux-default-routines"]], "setaux routine in GeoClaw": [[145, "setaux-routine-in-geoclaw"]], "Set environment variables": [[146, "set-environment-variables"]], "CLAW": [[146, "claw"]], "FC": [[146, "fc"]], "Using setplot.py to specify the desired plots": [[147, "using-setplot-py-to-specify-the-desired-plots"]], "Plotting Data Objects": [[147, "plotting-data-objects"]], "Overview": [[147, "overview"]], "Specifying classic run-time parameters in setrun.py": [[148, "specifying-classic-run-time-parameters-in-setrun-py"]], "Input": [[148, "input"], [149, "input"]], "Output": [[148, "output"], [149, "output"]], "Run-time parameters": [[148, "run-time-parameters"], [149, "run-time-parameters"]], "Specifying AMRClaw run-time parameters in setrun.py": [[149, "specifying-amrclaw-run-time-parameters-in-setrun-py"]], "Special AMR parameters": [[149, "special-amr-parameters"]], "Debugging flags for additional printing": [[149, "debugging-flags-for-additional-printing"]], "Sample setrun.py module for AMRClaw": [[150, "sample-setrun-py-module-for-amrclaw"]], "Specifying GeoClaw parameters in setrun.py": [[151, "specifying-geoclaw-parameters-in-setrun-py"]], "Additional AMR parameters": [[151, "additional-amr-parameters"]], "General geo parameters": [[151, "general-geo-parameters"]], "Topography data file parameters": [[151, "topography-data-file-parameters"]], "qinit data file parameters": [[151, "qinit-data-file-parameters"]], "Force some cells to be initially dry": [[151, "force-some-cells-to-be-initially-dry"]], "Adjust sea level in some regions": [[151, "adjust-sea-level-in-some-regions"]], "AMR refinement region parameters": [[151, "amr-refinement-region-parameters"]], "Deprecated Fixedgrid output parameters": [[151, "deprecated-fixedgrid-output-parameters"]], "Fixed grid maximum monitoring / arrival times": [[151, "fixed-grid-maximum-monitoring-arrival-times"]], "Fixed grid output": [[151, "fixed-grid-output"]], "Storm Specification Data": [[151, "storm-specification-data"]], "Sample setrun.py module for classic Clawpack": [[152, "sample-setrun-py-module-for-classic-clawpack"]], "Saving and sharing results": [[153, "saving-and-sharing-results"]], "Making webpages of plots": [[153, "making-webpages-of-plots"]], "Sharing your results": [[153, "sharing-your-results"]], "Jupyter notebooks": [[153, "jupyter-notebooks"]], "Source terms for shallow water on the sphere": [[154, "source-terms-for-shallow-water-on-the-sphere"]], "Compiling the Sphinx documentation locally": [[155, "compiling-the-sphinx-documentation-locally"]], "src1d default routines": [[156, "src1d-default-routines"]], "src1d routine in GeoClaw": [[156, "src1d-routine-in-geoclaw"]], "src default routines": [[157, "src-default-routines"]], "src routine in GeoClaw": [[157, "src-routine-in-geoclaw"]], "Storm Specification Class and Tools": [[158, "storm-specification-class-and-tools"]], "Sources for Storm Surge Data": [[159, "sources-for-storm-surge-data"]], "Timing Statistics": [[161, "timing-statistics"]], "Topography data": [[162, "topography-data"]], "Downloading topography files": [[162, "downloading-topography-files"]], "NetCDF format": [[162, "netcdf-format"]], "Topography displacement files": [[162, "topography-displacement-files"]], "qinit data file": [[162, "qinit-data-file"]], "Python tools for working with topo and dtopo": [[163, "python-tools-for-working-with-topo-and-dtopo"]], "topotools module for working with topography data": [[164, "topotools-module-for-working-with-topography-data"]], "Troubleshooting Installation": [[165, "troubleshooting-installation"]], "Troubleshooting Fortran:": [[165, "troubleshooting-fortran"]], "Setting the Fortran compiler to be used by f2py (pip)": [[165, "setting-the-fortran-compiler-to-be-used-by-f2py-pip"]], "Trouble compiling Fortran code at the command line": [[165, "trouble-compiling-fortran-code-at-the-command-line"]], "Trouble running \u201cmake .exe\u201d": [[165, "trouble-running-make-exe"]], "Trouble running \u201cmake .data\u201d": [[165, "trouble-running-make-data"]], "Trouble running \u201cmake .output\u201d": [[165, "trouble-running-make-output"]], "Trouble running \u201cmake .plots\u201d": [[165, "trouble-running-make-plots"]], "Some sources of tsunami data": [[166, "some-sources-of-tsunami-data"]], "Topography / bathymetry": [[166, "topography-bathymetry"]], "Earthquake source models": [[166, "earthquake-source-models"]], "DART buoy data": [[166, "dart-buoy-data"]], "Tide gauges": [[166, "tide-gauges"]], "User files required for the Fortran code": [[167, "user-files-required-for-the-fortran-code"]], "Specifying the initial conditions": [[167, "specifying-the-initial-conditions"]], "Specifying the Riemann solver": [[167, "specifying-the-riemann-solver"]], "Specifying boundary conditions": [[167, "specifying-boundary-conditions"]], "Specifying problem-specific data": [[167, "specifying-problem-specific-data"]], "Specifying spatially-varying data using setaux": [[167, "specifying-spatially-varying-data-using-setaux"]], "Using b4step for work to be done before each time step": [[167, "using-b4step-for-work-to-be-done-before-each-time-step"]], "Using src for source terms": [[167, "using-src-for-source-terms"]], "Using src1d for source terms with AMRClaw": [[167, "using-src1d-for-source-terms-with-amrclaw"]], "Plotting with VisIt": [[168, "plotting-with-visit"]], "Clawpack Virtual Machine": [[169, "clawpack-virtual-machine"]], "Wave-propagation algorithms": [[170, "wave-propagation-algorithms"]], "One space dimension": [[170, "one-space-dimension"]], "Godunov\u2019s method": [[170, "godunov-s-method"]], "High-resolution methods": [[170, "high-resolution-methods"]], "f-wave formulation": [[170, "f-wave-formulation"]], "Capacity functions": [[170, "capacity-functions"]], "Source terms": [[170, "source-terms"]]}, "indexentries": {"clawplotaxes (built-in class)": [[0, "ClawPlotAxes"]], "gethandle()": [[0, "gethandle"], [2, "gethandle"], [3, "gethandle"]], "new_plotitem()": [[0, "new_plotitem"]], "clawplotdata (built-in class)": [[1, "ClawPlotData"]], "clearfigures()": [[1, "clearfigures"]], "clearframes()": [[1, "clearframes"]], "getaxes()": [[1, "getaxes"]], "getfigure()": [[1, "getfigure"]], "getframe()": [[1, "getframe"], [3, "getframe"]], "getitem()": [[1, "getitem"]], "iplotclaw()": [[1, "iplotclaw"]], "new_plotfigure()": [[1, "new_plotfigure"]], "plotframe()": [[1, "plotframe"]], "printframes()": [[1, "printframes"]], "showitems()": [[1, "showitems"]], "clawplotfigure (built-in class)": [[2, "ClawPlotFigure"]], "new_plotaxes()": [[2, "new_plotaxes"]], "clawplotitem (built-in class)": [[3, "ClawPlotItem"]], "csvfault (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.CSVFault"]], "dtopography (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.DTopography"]], "dtopography1d (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.DTopography1d"]], "fault (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.Fault"]], "fault1d (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.Fault1d"]], "mo() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.Mo"]], "mo() (clawpack.geoclaw.dtopotools.subfault method)": [[32, "clawpack.geoclaw.dtopotools.SubFault.Mo"]], "mw() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.Mw"]], "mw() (in module clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.Mw"]], "siftfault (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.SiftFault"]], "subfault (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.SubFault"]], "subfault1d (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.SubFault1d"]], "subdividedplanefault (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.SubdividedPlaneFault"]], "tensorproductfault (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.TensorProductFault"]], "ucsbfault (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.UCSBFault"]], "calculate_geometry() (clawpack.geoclaw.dtopotools.subfault method)": [[32, "clawpack.geoclaw.dtopotools.SubFault.calculate_geometry"]], "calculate_geometry_triangles() (clawpack.geoclaw.dtopotools.subfault method)": [[32, "clawpack.geoclaw.dtopotools.SubFault.calculate_geometry_triangles"]], "centers (clawpack.geoclaw.dtopotools.subfault property)": [[32, "clawpack.geoclaw.dtopotools.SubFault.centers"]], "clawpack.geoclaw.dtopotools": [[32, "module-clawpack.geoclaw.dtopotools"]], "containing_rect() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.containing_rect"]], "convert_to_standard_units() (clawpack.geoclaw.dtopotools.subfault method)": [[32, "clawpack.geoclaw.dtopotools.SubFault.convert_to_standard_units"]], "coordinate_specification (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.coordinate_specification"]], "coordinate_specification (clawpack.geoclaw.dtopotools.subfault1d attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault1d.coordinate_specification"]], "corners (clawpack.geoclaw.dtopotools.subfault property)": [[32, "clawpack.geoclaw.dtopotools.SubFault.corners"]], "create_dtopo_xy() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.create_dtopo_xy"]], "create_dtopography() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.create_dtopography"]], "dz_at_t() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.dZ_at_t"]], "dz_at_t() (clawpack.geoclaw.dtopotools.dtopography1d method)": [[32, "clawpack.geoclaw.dtopotools.DTopography1d.dZ_at_t"]], "dz_cellave_at_t() (clawpack.geoclaw.dtopotools.dtopography1d method)": [[32, "clawpack.geoclaw.dtopotools.DTopography1d.dZ_cellave_at_t"]], "dz_max() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.dZ_max"]], "depth (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.depth"]], "dip (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.dip"]], "dynamic_slip() (clawpack.geoclaw.dtopotools.subfault method)": [[32, "clawpack.geoclaw.dtopotools.SubFault.dynamic_slip"]], "gauss_pts (clawpack.geoclaw.dtopotools.subfault property)": [[32, "clawpack.geoclaw.dtopotools.SubFault.gauss_pts"]], "latitude (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.latitude"]], "latitude (clawpack.geoclaw.dtopotools.subfault1d attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault1d.latitude"]], "length (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.length"]], "length (clawpack.geoclaw.dtopotools.subfault1d attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault1d.length"]], "longitude (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.longitude"]], "longitude (clawpack.geoclaw.dtopotools.subfault1d attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault1d.longitude"]], "module": [[32, "module-clawpack.geoclaw.dtopotools"], [35, "module-clawpack.geoclaw.fgmax_tools"], [37, "module-clawpack.geoclaw.fgout_tools"], [51, "module-clawpack.geoclaw.util"], [63, "module-clawpack.geoclaw.kmltools"], [92, "module-clawpack.pyclaw.limiters.tvd"], [97, "module-clawpack.pyclaw.fileio.ascii"], [97, "module-clawpack.pyclaw.fileio.binary"], [97, "module-clawpack.pyclaw.fileio.hdf5"], [97, "module-clawpack.pyclaw.fileio.netcdf"], [102, "module-clawpack.riemann.acoustics_1D_py"], [102, "module-clawpack.riemann.advection_1D_py"], [102, "module-clawpack.riemann.burgers_1D_py"], [102, "module-clawpack.riemann.euler_1D_py"], [102, "module-clawpack.riemann.shallow_1D_py"], [109, "module-clawpack.pyclaw.util"], [158, "module-clawpack.geoclaw.surge.storm"], [164, "module-clawpack.geoclaw.topotools"]], "mu (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.mu"]], "okada() (clawpack.geoclaw.dtopotools.subfault method)": [[32, "clawpack.geoclaw.dtopotools.SubFault.okada"]], "plot_dz_colors() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.plot_dZ_colors"]], "plot_dz_colors() (in module clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.plot_dZ_colors"]], "plot_dz_contours() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.plot_dZ_contours"]], "plot_dz_contours() (in module clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.plot_dZ_contours"]], "plot_subfaults() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.plot_subfaults"]], "plot_subfaults_depth() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.plot_subfaults_depth"]], "rake (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rake"]], "rake (clawpack.geoclaw.dtopotools.subfault1d attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault1d.rake"]], "read() (clawpack.geoclaw.dtopotools.csvfault method)": [[32, "clawpack.geoclaw.dtopotools.CSVFault.read"]], "read() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.read"]], "read() (clawpack.geoclaw.dtopotools.dtopography1d method)": [[32, "clawpack.geoclaw.dtopotools.DTopography1d.read"]], "read() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.read"]], "read() (clawpack.geoclaw.dtopotools.ucsbfault method)": [[32, "clawpack.geoclaw.dtopotools.UCSBFault.read"]], "rise_fraction() (in module clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.rise_fraction"]], "rise_shape (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rise_shape"]], "rise_time (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rise_time"]], "rise_time_starting (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rise_time_starting"]], "rupture_time (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rupture_time"]], "rupture_type (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rupture_type"]], "set_corners() (clawpack.geoclaw.dtopotools.subfault method)": [[32, "clawpack.geoclaw.dtopotools.SubFault.set_corners"]], "set_dynamic_slip() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.set_dynamic_slip"]], "set_subfaults() (clawpack.geoclaw.dtopotools.siftfault method)": [[32, "clawpack.geoclaw.dtopotools.SiftFault.set_subfaults"]], "slip (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.slip"]], "strike (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.strike"]], "strike (clawpack.geoclaw.dtopotools.subfault1d attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault1d.strike"]], "strike_direction() (in module clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.strike_direction"]], "subdivide() (clawpack.geoclaw.dtopotools.subdividedplanefault method)": [[32, "clawpack.geoclaw.dtopotools.SubdividedPlaneFault.subdivide"]], "width (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.width"]], "write() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.write"]], "write() (clawpack.geoclaw.dtopotools.dtopography1d method)": [[32, "clawpack.geoclaw.dtopotools.DTopography1d.write"]], "write() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.write"]], "fgmaxgrid (class in clawpack.geoclaw.fgmax_tools)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid"]], "adjust_fgmax_1d() (in module clawpack.geoclaw.fgmax_tools)": [[35, "clawpack.geoclaw.fgmax_tools.adjust_fgmax_1d"]], "bounding_box() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.bounding_box"]], "clawpack.geoclaw.fgmax_tools": [[35, "module-clawpack.geoclaw.fgmax_tools"]], "interp_dz() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.interp_dz"]], "ps4_to_arrays() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.ps4_to_arrays"]], "read_fgmax_grids_data() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.read_fgmax_grids_data"]], "read_output() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.read_output"]], "write_to_fgmax_data() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.write_to_fgmax_data"]], "b (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.B"]], "fgoutframe (class in clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame"]], "fgoutgrid (class in clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid"]], "x (clawpack.geoclaw.fgout_tools.fgoutgrid property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.X"], [37, "clawpack.geoclaw.fgout_tools.FGoutGrid.x"]], "y (clawpack.geoclaw.fgout_tools.fgoutgrid property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.Y"], [37, "clawpack.geoclaw.fgout_tools.FGoutGrid.y"]], "clawpack.geoclaw.fgout_tools": [[37, "module-clawpack.geoclaw.fgout_tools"]], "eta (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.eta"]], "extent_centers (clawpack.geoclaw.fgout_tools.fgoutgrid property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.extent_centers"]], "extent_edges (clawpack.geoclaw.fgout_tools.fgoutgrid property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.extent_edges"]], "get_as_array() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.get_as_array"]], "h (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.h"]], "hss (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.hss"]], "hu (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.hu"]], "hv (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.hv"]], "make_fgout_fcn_xy() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.make_fgout_fcn_xy"]], "make_fgout_fcn_xyt() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.make_fgout_fcn_xyt"]], "print_netcdf_info() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.print_netcdf_info"]], "read_fgout_grids_data() (clawpack.geoclaw.fgout_tools.fgoutgrid method)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.read_fgout_grids_data"]], "read_frame() (clawpack.geoclaw.fgout_tools.fgoutgrid method)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.read_frame"]], "read_netcdf() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.read_netcdf"]], "read_netcdf_arrays() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.read_netcdf_arrays"]], "s (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.s"]], "set_plotdata() (clawpack.geoclaw.fgout_tools.fgoutgrid method)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.set_plotdata"]], "u (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.u"]], "v (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.v"]], "write_netcdf() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.write_netcdf"]], "write_to_fgout_data() (clawpack.geoclaw.fgout_tools.fgoutgrid method)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.write_to_fgout_data"]], "bearing() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.bearing"]], "clawpack.geoclaw.util": [[51, "module-clawpack.geoclaw.util"]], "dist_latlong2meters() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.dist_latlong2meters"]], "dist_meters2latlong() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.dist_meters2latlong"]], "dms2decimal() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.dms2decimal"]], "fetch_noaa_tide_data() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.fetch_noaa_tide_data"]], "gctransect() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.gctransect"]], "haversine() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.haversine"]], "inv_haversine() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.inv_haversine"]], "box2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.box2kml"]], "clawpack.geoclaw.kmltools": [[63, "module-clawpack.geoclaw.kmltools"]], "deg2dms() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.deg2dms"]], "dtopo2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.dtopo2kml"]], "f2s() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.f2s"]], "fgmax2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.fgmax2kml"]], "fgout2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.fgout2kml"]], "gauges2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.gauges2kml"]], "kml_build_colorbar() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.kml_build_colorbar"]], "kml_cb() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.kml_cb"]], "kml_png() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.kml_png"]], "kml_timespan() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.kml_timespan"]], "line2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.line2kml"]], "make_input_data_kmls() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.make_input_data_kmls"]], "pcolorcells_for_kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.pcolorcells_for_kml"]], "png2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.png2kml"]], "poly2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.poly2kml"]], "quad2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.quad2kml"]], "regions2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.regions2kml"]], "topo2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.topo2kml"]], "topo2kmz() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.topo2kmz"]], "transect2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.transect2kml"]], "controller (class in clawpack.pyclaw.controller)": [[91, "clawpack.pyclaw.controller.Controller"]], "f_file_name (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.F_file_name"]], "f_path (clawpack.pyclaw.controller.controller property)": [[91, "clawpack.pyclaw.controller.Controller.F_path"]], "check_validity() (clawpack.pyclaw.controller.controller method)": [[91, "clawpack.pyclaw.controller.Controller.check_validity"]], "compute_f 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(clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.outdir"]], "outdir_p (clawpack.pyclaw.controller.controller property)": [[91, "clawpack.pyclaw.controller.Controller.outdir_p"]], "output_file_prefix (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.output_file_prefix"]], "output_format (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.output_format"]], "output_options (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.output_options"]], "output_style (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.output_style"]], "overwrite (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.overwrite"]], "plot() (clawpack.pyclaw.controller.controller method)": [[91, "clawpack.pyclaw.controller.Controller.plot"]], "plotdata (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.plotdata"]], "run() (clawpack.pyclaw.controller.controller method)": [[91, "clawpack.pyclaw.controller.Controller.run"]], "rundir (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.rundir"]], "runmake (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.runmake"]], "savecode (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.savecode"]], "solver (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.solver"]], "tfinal (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.tfinal"]], "verbosity (clawpack.pyclaw.controller.controller property)": [[91, "clawpack.pyclaw.controller.Controller.verbosity"]], "viewable_attributes (clawpack.pyclaw.controller.controller attribute)": 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attribute)": [[94, "clawpack.petclaw.geometry.Domain.fwave"]], "gauge_dir_name (clawpack.pyclaw.geometry.grid attribute)": [[94, "clawpack.pyclaw.geometry.Grid.gauge_dir_name"]], "gauge_file_names (clawpack.pyclaw.geometry.grid attribute)": [[94, "clawpack.pyclaw.geometry.Grid.gauge_file_names"]], "gauge_files (clawpack.pyclaw.geometry.grid attribute)": [[94, "clawpack.pyclaw.geometry.Grid.gauge_files"]], "gauges (clawpack.pyclaw.geometry.grid attribute)": [[94, "clawpack.pyclaw.geometry.Grid.gauges"]], "get_dim_attribute() (clawpack.pyclaw.geometry.grid method)": [[94, "clawpack.pyclaw.geometry.Grid.get_dim_attribute"]], "get_dim_attribute() (clawpack.pyclaw.geometry.patch method)": [[94, "clawpack.pyclaw.geometry.Patch.get_dim_attribute"]], "grid (clawpack.pyclaw.geometry.domain property)": [[94, "clawpack.pyclaw.geometry.Domain.grid"]], "kernel_language (clawpack.petclaw.geometry.domain attribute)": [[94, "clawpack.petclaw.geometry.Domain.kernel_language"]], "level 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index 912800b830f6e563505eee91995cb295b1c43292..73b52e53fc3de75e4a71c6ba9b41704d6020b134 100644
GIT binary patch
delta 62
zcmeyT|4)BI5~E>>L28~!p<#-?Ns48ng{4_avZaNgfuUidsd=iYv8iREp^-sqqJ>4G
Rv5`rVxv@dY=E;oNVgPv85~lzF

delta 62
zcmeyT|4)BI5~HDcnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=E;oNVgQYE6QckC

diff --git a/v5.10.x/.doctrees/application_documentation.doctree b/v5.10.x/.doctrees/application_documentation.doctree
index 20d65a8bf87d21d62806e94f465673b4b6611194..54738a29879f04bfd5d20ba8a58d432f270ae3bf 100644
GIT binary patch
delta 62
zcmbR3I@@(a0i$7wL28~!p<#-?Ns48ng{4_avZaNgfuUidsd=iYv8iREp^-sqqJ>4G
Rv5`rVxv@dY=7o&E6aZLv62brg

delta 62
zcmbR3I@@(a0i&ULnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=7o&E6aZ}#6TScd

diff --git a/v5.10.x/.doctrees/apps.doctree b/v5.10.x/.doctrees/apps.doctree
index c6740df915a4fe9f2ec6b4eaf2eba6b14460844b..98813b4a3395fe196d6dca3c8932131a274fcbbb 100644
GIT binary patch
delta 62
zcmdl~v#Dl-8>3-~L28~!p<#-?Ns48ng{4_avZaNgfuUidsd=iYv8iREp^-sqqJ>4G
Rv5`rVxv@dY=5of}HUM(b66XK_

delta 62
zcmdl~v#Dl-8>69lnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=5of}HUNih6XO5?

diff --git a/v5.10.x/.doctrees/aws.doctree b/v5.10.x/.doctrees/aws.doctree
index b3f578d292944f231fceff94ca68ee1541287407..0982c38b8069a7c05f12ccd339a10f4d4344c9fa 100644
GIT binary patch
delta 64
zcmex)gX!lDrVTEPh9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
U7Kz42CQ0VT1}U3M8Cg~X0K~Nu4G
Rv5`rVxv@dY=1Rt!iU4U`62brg

delta 62
zcmccQcFApn2cw~RnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
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diff --git a/v5.10.x/.doctrees/b4step_defaults.doctree b/v5.10.x/.doctrees/b4step_defaults.doctree
index eea76cf010788d49e72cf62dae9557f1ab9be107..c6a95b4215701c2c054296a9dc0ebff3d7d2def7 100644
GIT binary patch
delta 62
zcmZ4BvA|4G
Rv5`rVxv@dY=3d6hN&r@|5=8(2

delta 62
zcmZ4BvA|}rqGeLz=3d6hN&st36F~p~

diff --git a/v5.10.x/.doctrees/bc.doctree b/v5.10.x/.doctrees/bc.doctree
index 47d8ce4976e218ceba11f95e76cdda9c68137c7f..13b36f57aec133a9f086064c541b2fa3fc95fe49 100644
GIT binary patch
delta 64
zcmccqhw=I!#tlx4h9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
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delta 64
zcmccqhw=I!#tlx4hURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
U$rfhDsi}#UNr{__8K2Yu0NSAykN^Mx

diff --git a/v5.10.x/.doctrees/biblio.doctree b/v5.10.x/.doctrees/biblio.doctree
index b9ad59b0f467172ed80a9b556ba59dd1e6f707e5..e6ec395686e94af6187884fc56899ff154a4ae48 100644
GIT binary patch
delta 64
zcmdnJntAtX<_%tqh9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
U7Kz42CQ0VT1}U4X86Bt<8

delta 64
zcmbPvjB(~M#tlAHq)$

delta 64
zcmaENiuv6s<_$iKhURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
U$rfhDsi}#UNr{_l89zP-0MV-z<^TWy

diff --git a/v5.10.x/.doctrees/changes_to_master.doctree b/v5.10.x/.doctrees/changes_to_master.doctree
index 059c08cb06be368742922386958edbe203380b4c..fed2b336b745b1a603ce4f05c2c386642da8ee65 100644
GIT binary patch
delta 925
zcmZ{iPiWI{6vugM$DHkG*K{pynkF?{yRBWDbggT|vJLexb#!HV5WBH#4McG*?J9b7
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delta 62
zcmX?QddhS|5Tl`anpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
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diff --git a/v5.10.x/.doctrees/claw46to50.doctree b/v5.10.x/.doctrees/claw46to50.doctree
index 56ccc124eabb50ed1d945c657ca8674e24e7ed73..bb557118f3982ca31dfad862e5c549d7015361a6 100644
GIT binary patch
delta 62
zcmaD}|Ga)f5Tjv4G
Rv5`rVxv@dY=4QqeI{=TX6B+;j

delta 62
zcmaD}|Ga)f5Tl`anpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=4QqeI{>6d6czvg

diff --git a/v5.10.x/.doctrees/claw4x.doctree b/v5.10.x/.doctrees/claw4x.doctree
index 1e1c152cf2f9b99ed4aa2b564d9cff9a87a6d069..5605945faee21b3b24bc958b055f7145c34cd032 100644
GIT binary patch
delta 62
zcmZ1{zfOLG7o%Z`L28~!p<#-?Ns48ng{4_avZaNgfuUidsd=iYv8iREp^-sqqJ>4G
Rv5`rVxv@dY=4wV`J^)1r5qAIp

delta 62
zcmZ1{zfOLG7o(whnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=4wV`J^)#x5_13m

diff --git a/v5.10.x/.doctrees/clawpack5.doctree b/v5.10.x/.doctrees/clawpack5.doctree
index 946905366d8bd15479c2bd69db15844b5c7edb4f..c1c9daf1dcad6307c0bafcff017df5e9b9fcdab7 100644
GIT binary patch
delta 64
zcmcb)hWX|i<_!Uih9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
U7Kz42CQ0VT1}U2x8E;$x0HqfcWB>pF

delta 64
zcmcb)hWX|i<_!UihURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
U$rfhDsi}#UNr{^q8E;$x0J*ajU;qFB

diff --git a/v5.10.x/.doctrees/clawpack_components.doctree b/v5.10.x/.doctrees/clawpack_components.doctree
index c2a4f60036f95ab478bd4f46d1ea6d76a499eb38..47589d35b3e252f0a1d0d0d12fb9b41a5bbb78ba 100644
GIT binary patch
delta 62
zcmdm8zq@`z3Zr3(L28~!p<#-?Ns48ng{4_avZaNgfuUidsd=iYv8iREp^-sqqJ>4G
Rv5`rVxv@dY=BbQob^v~X5~u(G

delta 62
zcmdm8zq@`z3ZtQUnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=BbQob^wzd6QlqD

diff --git a/v5.10.x/.doctrees/community.doctree b/v5.10.x/.doctrees/community.doctree
index fe536186b98b55e8018571773fe81e029584dcf5..24b74349ad6c76fd41faeeb7f0bd55d0d93d0ff9 100644
GIT binary patch
delta 64
zcmcb$gXz`|rVRm%h9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
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delta 64
zcmcb$gXz`|rVRm%hURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
U$rfhDsi}#UNr{^q8E?)40KY>OKL7v#

diff --git a/v5.10.x/.doctrees/contents.doctree b/v5.10.x/.doctrees/contents.doctree
index 620d4cd7ba90ec3566a65f49bb95cac7842a7b39..ac4d4fe7e245facaa8be7cdecac008a677d219cc 100644
GIT binary patch
delta 64
zcmX>%pYhy$#tnXqh9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
T7Kz42CQ0VT1}U5C8U6hLmUR;y

delta 64
zcmX>%pYhy$#tnXqhURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
T$rfhDsi}#UNr{{58U6hLs}U3#

diff --git a/v5.10.x/.doctrees/contribute_apps.doctree b/v5.10.x/.doctrees/contribute_apps.doctree
index b204682a38c50d0ebb44f1d65bde1685dc1d5970..bae098ac4c011e43ebf8d08eaa4968db2de061fa 100644
GIT binary patch
delta 62
zcmbQHJxzN<45ML*L28~!p<#-?Ns48ng{4_avZaNgfuUidsd=iYv8iREp^-sqqJ>4G
Rv5`rVxv@dY=3Yil5dcFo5nliR

delta 62
zcmbQHJxzN<45OiWnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
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diff --git a/v5.10.x/.doctrees/current_data.doctree b/v5.10.x/.doctrees/current_data.doctree
index 486f9a798ca8fd13659e1b9436206812026284fb..3201304b08ccf6852db67fa4f38a193f3fc8265c 100644
GIT binary patch
delta 64
zcmaE{kMYGm#tmVNh9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
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delta 64
zcmaE{kMYGm#tmVNhURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
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diff --git a/v5.10.x/.doctrees/developers.doctree b/v5.10.x/.doctrees/developers.doctree
index 759bc0ef0285157d26d1f4afc0b62307a1273a15..3497056d46209ace7795b2c9e5e90b676a17c5a8 100644
GIT binary patch
delta 68
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diff --git a/v5.10.x/.doctrees/environment.pickle b/v5.10.x/.doctrees/environment.pickle
index d250d1b58b426672ef9f02f735a107e7f7688974..f0cca6739695a3f30d915ddcbc05104310a54ea8 100644
GIT binary patch
delta 67868
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zzY(h)zVXXYdxvxolgI
z(O{SWivjP3VvP_m+5uw(jB`MWfQb&6B;XAPyeVL^1AM{q{xQuV)5TpT_Z;=yuc&HjK-Cp-sv4Kq5VQZcMWZ~6ng7!wzFwZi-2ZLS
zAhChd-n0I^Kg@Ga?zsBy}8lF
zY42$j8oJKSE}d49_-zc1UdmskkMbMv?-n{E4L?yxKBLN4;un^@+ogW}y#DjEKO26W
zFf|K5mfwFyDdVUcF4#LOGz|4U{tw(=aHbnm>nv5Af9!zrqG)86GL2tc7Uhj2E
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z+fV#aoYk%T&G!y}?&Xj7_+uu2Eas04{@B1DKk!Fk&XU95j_}8a{IQuof;nL-e;djl
zzw^g0{BeUn{^E}b{P7)s%;Jy9{4tzAel64xp9}bFHh+xakNf4G
Rv5`rVxv@dY=4QqaegIpn5&r-H

delta 62
zcmcbvcwKQr5Tl`anpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=4QqaegJSt68iuE

diff --git a/v5.10.x/.doctrees/fgmax.doctree b/v5.10.x/.doctrees/fgmax.doctree
index c4121b6d0cb4051a045019b8d16c1c7690b436d0..3fc067b766f6d8e3d6da9f6a1554628ba3ca2117 100644
GIT binary patch
delta 68
zcmX@|j^)TZmJJ?^h9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
Y7Kz42CQ0VT1}V*zjN2<28Bd!6011H=1^@s6

delta 68
zcmX@|j^)TZmJJ?^hURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
Y$rfhDsi}#UNr}ysjN2<28Bd!603r<*0ssI2

diff --git a/v5.10.x/.doctrees/fgmax_tools_module.doctree b/v5.10.x/.doctrees/fgmax_tools_module.doctree
index ee369fd20ba48a6b8bc85cd225c90bcd6590795f..abc811f3ce2ba922773db7bfd74cf5d8435131aa 100644
GIT binary patch
delta 64
zcmccnlJV|K#tlh~h9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
U7Kz42CQ0VT1}U2-GkO&R0LC>G7XSbN

delta 64
zcmccnlJV|K#tlh~hURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
U$rfhDsi}#UNr{^$GkO&R0NT+N6951J

diff --git a/v5.10.x/.doctrees/fgout.doctree b/v5.10.x/.doctrees/fgout.doctree
index 107da3be458ebe8019fd87e04b08b143f0596480..923f5947c837c449d4114fe659c6370e908ba2fc 100644
GIT binary patch
delta 64
zcmeyqiTV2`<_#W8UI}e0JR1b#Q*>R

delta 64
zcmeyqiTV2`<_#WxL29Cf
YMWV5hNs_s-K}z#v#_f|C8CN?10N3UeVE_OC

delta 68
zcmdnj!n&`8bwd)Pp?R8FrFm(7mcFS)ijhUCg@u`AYD!v)p-G})nyI-(lA&>urG<%M
YvW1y(YHFfoQeyLD#_f|C8CN?10Pu1ZT>t<8

diff --git a/v5.10.x/.doctrees/first_run.doctree b/v5.10.x/.doctrees/first_run.doctree
index a030237c32373344a4edacbd2d99d68444662759..db61c28ff790c99ca18ad647cd1a201a5980e92b 100644
GIT binary patch
delta 64
zcmaF8lJWIQ#ti|Ch9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
T7Kz42CQ0VT1}U2x8MA@`sv#4P

delta 64
zcmaF8lJWIQ#ti|ChURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
T$rfhDsi}#UNr{^q8MA@`zP%KS

diff --git a/v5.10.x/.doctrees/first_run_fortran.doctree b/v5.10.x/.doctrees/first_run_fortran.doctree
index 6bc49769111e4cdd47a186bc26db069028042387..04907a15fb1f70c900287f61ec20a9ba8274d085 100644
GIT binary patch
delta 64
zcmcbAobmo~#tjLKh9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
U7Kz42CQ0VT1}U2-GWsO}0Jc^W#sB~S

delta 64
zcmcbAobmo~#tjLKhURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
U$rfhDsi}#UNr{^$GWsO}0Lt4G
Rv5`rVxv@dY=6*(AZ2(+25#|5@

delta 62
zcmbOeIVW;M9HXImnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=6*(AZ2)l865;>=

diff --git a/v5.10.x/.doctrees/flagregions.doctree b/v5.10.x/.doctrees/flagregions.doctree
index 12063c7cbf35c7d6545218d0d1e6d295197c8cab..087ee965530387a12fad48648e4a24f4613fc2ef 100644
GIT binary patch
delta 64
zcmcc8%6O%faYG2BVTnO%o=Kr$ioQvTWuk?pSxT~{g`t6=VWO#ds;RN5Wul>xL29Cf
TMWV5hNs_s-LCWSurG<%M
TvW1y(YHFfoQsU-TMt?^DqT&xL29Cf
TMWV5hNs_s-LCWSv#)P8)nHv+Y

delta 64
zcmaFZ%lxpHc|!oBp?R8FrFm(7mcFS)ijhUCg@u`AYD!v)p-G})nyI-(lA&>urG<%M
TvW1y(YHFfoQsU-D#)P8)t+y1b

diff --git a/v5.10.x/.doctrees/fortran.doctree b/v5.10.x/.doctrees/fortran.doctree
index 3ebeb4b93a85d389727888554a35e928044de5e6..0d28c997b264c7cf9735677d6485d69b6b6869b3 100644
GIT binary patch
delta 62
zcmbP~Iw^I752Im;L28~!p<#-?Ns48ng{4_avZaNgfuUidsd=iYv8iREp^-sqqJ>4G
Rv5`rVxv@dY=2}KkLjYLd5!3(x

delta 62
zcmbP~Iw^I752K-ZnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=2}KkLjY}j63_qu

diff --git a/v5.10.x/.doctrees/fortran_compilers.doctree b/v5.10.x/.doctrees/fortran_compilers.doctree
index ee1a85c66213a87636303b63bd4d6ed926229d35..ed0d4b3484d03e256717d168a1923fb1fe52c6d0 100644
GIT binary patch
delta 64
zcmeyko$=###tjLKh9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
U7Kz42CQ0VT1}U2-GA2X;0Jn@2)Bpeg

delta 64
zcmeyko$=###tjLKhURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
U$rfhDsi}#UNr{^$GA2X;0L&;9&;S4c

diff --git a/v5.10.x/.doctrees/fvmbook.doctree b/v5.10.x/.doctrees/fvmbook.doctree
index 06ad6953e654bf59716755fd13558dd2ebcf3e20..acd2ab185a5e3512a05ce32465d0972c15779e61 100644
GIT binary patch
delta 62
zcmX>dcsg){52Im;L28~!p<#-?Ns48ng{4_avZaNgfuUidsd=iYv8iREp^-sqqJ>4G
Rv5`rVxv@dY=2}KSbpUG;5={UA

delta 62
zcmX>dcsg){52K-ZnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=2}KSbpU^^6G;F7

diff --git a/v5.10.x/.doctrees/galleries.doctree b/v5.10.x/.doctrees/galleries.doctree
index 5eeefe6a0a43d5cb39ddd28f43213d6926b041b2..03593ac1fb8d2fcd4f034ce34ec056b77733fe6e 100644
GIT binary patch
delta 62
zcmX?ZbKGV_0Ha}vL28~!p<#-?Ns48ng{4_avZaNgfuUidsd=iYv8iREp^-sqqJ>4G
Rv5`rVxv@dY=0?V2G5}#K5|97@

delta 62
zcmX?ZbKGV_0HdLKnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=0?V2G5~eQ6N~@=

diff --git a/v5.10.x/.doctrees/gauges.doctree b/v5.10.x/.doctrees/gauges.doctree
index e860abc2a1c93d70430f8cfd0eb9ffb6771faa66..ac49790bcf5c16b0e203f3d0d1e55a5cfde91d09 100644
GIT binary patch
delta 64
zcmdn+k7)xCc`+K67^LQz6dI=Jo1|DKT3DK;BwJb-8W4Eo
Sm>H+0CR!#XZmwqBx)%V-&=qO`

diff --git a/v5.10.x/.doctrees/geoclaw.doctree b/v5.10.x/.doctrees/geoclaw.doctree
index 47b4a27c107920a7d3bdf21ce68db44161e355c5..4e152b7c3b472a8eadaa8ea9205943e5ea82f928 100644
GIT binary patch
delta 62
zcmdlUvpr^m52Im;L28~!p<#-?Ns48ng{4_avZaNgfuUidsd=iYv8iREp^-sqqJ>4G
Rv5`rVxv@dY=32&GIsj*n6086K

delta 62
zcmdlUvpr^m52K-ZnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=32&GIskkt6Q}?H

diff --git a/v5.10.x/.doctrees/geoclaw1d.doctree b/v5.10.x/.doctrees/geoclaw1d.doctree
index 4c1b68b73f822de17e761d04277ffc19c36bece1..f0a8f2cc97d297be7d384df05e890d75562fd348 100644
GIT binary patch
delta 64
zcmX?og6Z@LrVRm%h9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
U7Kz42CQ0VT1}U2x8BZ+&0IKd3J^%m!

delta 64
zcmX?og6Z@LrVRm%hURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
U$rfhDsi}#UNr{^q8BZ+&0KbYAIsgCw

diff --git a/v5.10.x/.doctrees/geoclaw_started.doctree b/v5.10.x/.doctrees/geoclaw_started.doctree
index 1d392a377e2b400e08889dc27def1cfa5da4c721..294515366e6ea756aac298c167742dabd6f7f905 100644
GIT binary patch
delta 62
zcmZoGZY$mp!)RDykeX*wXqcjJl46-?VQH3=

delta 62
zcmZoGZY$mp!)R!pW>#rlnxCa_YLQ}Ok!oRKW|^9jmSSjxL29Cf
TMWV5hNs_s-LCWT-jK#YErF9em

delta 64
zcmeD9!PN1CX+sL5p?R8FrFm(7mcFS)ijhUCg@u`AYD!v)p-G})nyI-(lA&>urG<%M
TvW1y(YHFfoQsU;RjK#YEx)Bup

diff --git a/v5.10.x/.doctrees/geohints.doctree b/v5.10.x/.doctrees/geohints.doctree
index ee347c55c7bb98671ebc32652724f5acecefecb6..e51ab5b204218e6efb811a6e74b6c5f09629c544 100644
GIT binary patch
delta 64
zcmaF4n(^go#tnXqh9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
T7Kz42CQ0VT1}U5C8M8tFsiYH(

delta 64
zcmaF4n(^go#tnXqhURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
T$rfhDsi}#UNr{{58M8tFzCaX+

diff --git a/v5.10.x/.doctrees/geoplot.doctree b/v5.10.x/.doctrees/geoplot.doctree
index d8b4a4407fe4b32cf605ca67a80ec65eca3d90b8..66b5f7f98a68c506a0ac9a0b6b67f1bbb261a0af 100644
GIT binary patch
delta 62
zcmexh{=s~M52Im;L28~!p<#-?Ns48ng{4_avZaNgfuUidsd=iYv8iREp^-sqqJ>4G
Rv5`rVxv@dY=32&LDFAT65_}rqGeLz=32&LDFB6C6L$ar

diff --git a/v5.10.x/.doctrees/git_versions.doctree b/v5.10.x/.doctrees/git_versions.doctree
index 5b0117bb99ccb2747fa8eb5aa97eb2e3c67c71e7..5655a7106e9657568ec519a1b35d1f95ecfd3886 100644
GIT binary patch
delta 62
zcmdmJz0rC@7^7i{L28~!p<#-?Ns48ng{4_avZaNgfuUidsd=iYv8iREp^-sqqJ>4G
Rv5`rVxv@dY=5|Ic830yo5z+tv

delta 62
zcmdmJz0rC@7^9(inpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=5|Ic831bu63zes

diff --git a/v5.10.x/.doctrees/googleearth_plotting.doctree b/v5.10.x/.doctrees/googleearth_plotting.doctree
index 87b4c6ad2c635cbbab387d5613dd736a2cd1921c..63e47e0488f542a92dbbb3d2adf4d91e9ac05b6b 100644
GIT binary patch
delta 68
zcmcb0j_uYtwhd{Fh9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
Y7Kz42CQ0VT1}V+c8MjYoWIVhS01llMxBvhE

delta 68
zcmcb0j_uYtwhd{FhURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
Y$rfhDsi}#UNr}zV8MjYoWIVhS04FIHv;Y7A

diff --git a/v5.10.x/.doctrees/gpu.doctree b/v5.10.x/.doctrees/gpu.doctree
index e0f100b4800660db109a6e0aee3498be1cbe9eb7..4ad119087f5f9c68146da4faeebdbe6e2ad66921 100644
GIT binary patch
delta 62
zcmV~$!3}^g2nEn|BKf6QxOj3A6s{&Fx|azH`d($_w>LbL*SHbO2y?YHPE!!zGE-R0
Q(J5WkxsPKqMZImq4`&1tF8}}l

delta 62
zcmdm-x;b@&3!|ZVnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=2AvGLjZfA6Dt4!

diff --git a/v5.10.x/.doctrees/grid_registration.doctree b/v5.10.x/.doctrees/grid_registration.doctree
index e084433f35301ef17c409bf41531a674360c8392..df872a041b43ec7ba92582bb66957a70235c29b4 100644
GIT binary patch
delta 64
zcmcb;pYis7#tjLKh9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
U7Kz42CQ0VT1}U2-GJ3@U0I+@&rT_o{

delta 64
zcmcb;pYis7#tjLKhURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
U$rfhDsi}#UNr{^$GJ3@U0L2;4G
Rv5`rVxv@dY=4Qr4<^XDx60-mR

delta 62
zcmZ2lw6thL5Tl`anpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=4Qr4<^X>%6R!XO

diff --git a/v5.10.x/.doctrees/installing_fortcodes.doctree b/v5.10.x/.doctrees/installing_fortcodes.doctree
index 563d5d728fe3663e48edb1465b5867c147e7d509..4d572a2a30dfe4ae3aebaf77afb4edc6ca0490df 100644
GIT binary patch
delta 269
zcmX@s#dxlZk)?rks`EycBu2v$gVa2eLcz0}785-yr=mBN)
z(yO?VQ!u0^-%(c%fT>eZP*%vyQ%FiI&X|(H9y=w&poeTjIbeoPX4DYf>>{DZ%jh=w
ah*}T}$U&1O)xU5+Y=}UJZkANnl>-2&&{3oS

delta 213
zcmX@t#dxfXk)?rks`W;eBt}E?G_y+c()=uaQ;QTMi&P5>Gt1PJv=l>=M8h;wbBiQH
z<0MN96T@T+Gvn0MM9ZYa&C?lAi%O=KBo-;?R#c@aBz0}7S?U>0elIT0
z45GOt)b)Y1f`YO_W}ZS)VsXZl4EES583sK>=>?gw*;K-rm(g|dX|*7*k&5bHI3Q+3
Mzy&ues_V)D0C|o;jQ{`u

diff --git a/v5.10.x/.doctrees/installing_pip.doctree b/v5.10.x/.doctrees/installing_pip.doctree
index 77f87d7372ec5e129295c799d064db7a607f54c1..71791b714b61566d6c114c0cc43d762b9adfab19 100644
GIT binary patch
delta 392
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delta 367
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index aedd9fbfe7ae324abd3eda90183282bbb015a752..975d24dc3893d2b210e13a75f0b744c7fbdfe151 100644
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delta 72
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delta 72
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diff --git a/v5.10.x/.doctrees/lagrangian_gauges.doctree b/v5.10.x/.doctrees/lagrangian_gauges.doctree
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GIT binary patch
delta 64
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delta 64
zcmbQ*$T+o;aYF*5p?R8FrFm(7mcFS)ijhUCg@u`AYD!v)p-G})nyI-(lA&>urG<%M
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diff --git a/v5.10.x/.doctrees/license.doctree b/v5.10.x/.doctrees/license.doctree
index ba595400ef50150538b86df8733f520c765b8dd7..f6a0545d9b7d186c0b828ddc2239eda652dc3d1b 100644
GIT binary patch
delta 62
zcmdn)y4`hy52Im;L28~!p<#-?Ns48ng{4_avZaNgfuUidsd=iYv8iREp^-sqqJ>4G
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delta 62
zcmdn)y4`hy52K-ZnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
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diff --git a/v5.10.x/.doctrees/makefiles.doctree b/v5.10.x/.doctrees/makefiles.doctree
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GIT binary patch
delta 64
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delta 64
zcmZ3xnQ`rA#ti|ChURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
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diff --git a/v5.10.x/.doctrees/makefiles_library.doctree b/v5.10.x/.doctrees/makefiles_library.doctree
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GIT binary patch
delta 64
zcmex3hw4G
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delta 62
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diff --git a/v5.10.x/.doctrees/mapc2p.doctree b/v5.10.x/.doctrees/mapc2p.doctree
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GIT binary patch
delta 62
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delta 62
zcmcaCep!5j7o(whnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
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diff --git a/v5.10.x/.doctrees/marching_front.doctree b/v5.10.x/.doctrees/marching_front.doctree
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GIT binary patch
delta 68
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delta 68
zcmaF2lI7h>mJLyihURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
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diff --git a/v5.10.x/.doctrees/matlab_plotting.doctree b/v5.10.x/.doctrees/matlab_plotting.doctree
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GIT binary patch
delta 64
zcmdmXfoa4G
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delta 62
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diff --git a/v5.10.x/.doctrees/netcdf.doctree b/v5.10.x/.doctrees/netcdf.doctree
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GIT binary patch
delta 62
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delta 62
zcmbOxJ56?j7o(whnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
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diff --git a/v5.10.x/.doctrees/newapp.doctree b/v5.10.x/.doctrees/newapp.doctree
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GIT binary patch
delta 62
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delta 62
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diff --git a/v5.10.x/.doctrees/okada.doctree b/v5.10.x/.doctrees/okada.doctree
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GIT binary patch
delta 64
zcmezPl87npd0LbnXaR2}S

delta 64
zcmezPl4G
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delta 62
zcmdm!wkK_a7o(whnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
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diff --git a/v5.10.x/.doctrees/output_styles.doctree b/v5.10.x/.doctrees/output_styles.doctree
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GIT binary patch
delta 64
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delta 64
zcmbRGoN?-N#tjjShURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
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diff --git a/v5.10.x/.doctrees/packages.doctree b/v5.10.x/.doctrees/packages.doctree
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GIT binary patch
delta 64
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delta 64
zcmZ40#ki`AaYF*5p?R8FrFm(7mcFS)ijhUCg@u`AYD!v)p-G})nyI-(lA&>urG<%M
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diff --git a/v5.10.x/.doctrees/photos.doctree b/v5.10.x/.doctrees/photos.doctree
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GIT binary patch
delta 62
zcmZ1zvL4G
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delta 62
zcmZ1zvL}rqGeLz=4!@`8US*g6LA0l

diff --git a/v5.10.x/.doctrees/plotexamples.doctree b/v5.10.x/.doctrees/plotexamples.doctree
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GIT binary patch
delta 62
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delta 62
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diff --git a/v5.10.x/.doctrees/plotting.doctree b/v5.10.x/.doctrees/plotting.doctree
index 6ead3b372cb863fd48b4e14cb337449a487c0d8d..f638aca53db569420b845900acf344ac7444b7ec 100644
GIT binary patch
delta 62
zcmcaxdAD+dAERN3L28~!p<#-?Ns48ng{4_avZaNgfuUidsd=iYv8iREp^-sqqJ>4G
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delta 62
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delta 64
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diff --git a/v5.10.x/.doctrees/plotting_geoclaw.doctree b/v5.10.x/.doctrees/plotting_geoclaw.doctree
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delta 62
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delta 62
zcmbPiIN5MR9HXImnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
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diff --git a/v5.10.x/.doctrees/plotting_python.doctree b/v5.10.x/.doctrees/plotting_python.doctree
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GIT binary patch
delta 64
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delta 64
zcmbRBgK^dm#tkuyhURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
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diff --git a/v5.10.x/.doctrees/prereqs.doctree b/v5.10.x/.doctrees/prereqs.doctree
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GIT binary patch
delta 64
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delta 64
zcmbQ)%s8`|af1(|p?R8FrFm(7mcFS)ijhUCg@u`AYD!v)p-G})nyI-(lA&>urG<%M
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diff --git a/v5.10.x/.doctrees/pyclaw/about.doctree b/v5.10.x/.doctrees/pyclaw/about.doctree
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delta 64
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delta 64
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diff --git a/v5.10.x/.doctrees/pyclaw/basics.doctree b/v5.10.x/.doctrees/pyclaw/basics.doctree
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GIT binary patch
delta 62
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delta 62
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delta 64
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delta 62
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diff --git a/v5.10.x/.doctrees/pyclaw/controller.doctree b/v5.10.x/.doctrees/pyclaw/controller.doctree
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delta 64
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delta 64
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diff --git a/v5.10.x/.doctrees/pyclaw/evolve/limiters.doctree b/v5.10.x/.doctrees/pyclaw/evolve/limiters.doctree
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delta 64
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delta 64
zcmdn>jd|BM<_$57hURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
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diff --git a/v5.10.x/.doctrees/pyclaw/examples.doctree b/v5.10.x/.doctrees/pyclaw/examples.doctree
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GIT binary patch
delta 62
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delta 62
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diff --git a/v5.10.x/.doctrees/pyclaw/geometry.doctree b/v5.10.x/.doctrees/pyclaw/geometry.doctree
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GIT binary patch
delta 72
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delta 72
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diff --git a/v5.10.x/.doctrees/pyclaw/going_further.doctree b/v5.10.x/.doctrees/pyclaw/going_further.doctree
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delta 62
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delta 62
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diff --git a/v5.10.x/.doctrees/pyclaw/index.doctree b/v5.10.x/.doctrees/pyclaw/index.doctree
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GIT binary patch
delta 64
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delta 64
zcmZpAz}WPFaf275p?R8FrFm(7mcFS)ijhUCg@u`AYD!v)p-G})nyI-(lA&>urG<%M
TvW1y(YHFfoQsU-n#`Zh_q|6jk

diff --git a/v5.10.x/.doctrees/pyclaw/io.doctree b/v5.10.x/.doctrees/pyclaw/io.doctree
index 2d1a2142e580b3ba8a41682374a36e86fc2612fc..3d77293bf03beedfcf0766438ea834f5ae3d3457 100644
GIT binary patch
delta 68
zcmZ2?n|`>i_@%

delta 68
zcmZ2?n|JcWN4gZX<=fR
TY++`cnwn^tl(@N`k*fs&f9Vri

diff --git a/v5.10.x/.doctrees/pyclaw/plotting.doctree b/v5.10.x/.doctrees/pyclaw/plotting.doctree
index 03a428d92a090afdf4e57f16580ff27a063e6f57..f1b24d91533e480c66197f0f3bb37735a65609d1 100644
GIT binary patch
delta 62
zcmbOkGBadD45ML*L28~!p<#-?Ns48ng{4_avZaNgfuUidsd=iYv8iREp^-sqqJ>4G
Rv5`rVxv@dY=3d4g4FFj45>5aB

delta 62
zcmbOkGBadD45OiWnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=3d4g4FGMA6G{L8

diff --git a/v5.10.x/.doctrees/pyclaw/problem.doctree b/v5.10.x/.doctrees/pyclaw/problem.doctree
index 3ea29f09f462b27490f728f0d756983550694ad0..e881b25fc43c6ecf8af009d07bc3a6ea275dafe0 100644
GIT binary patch
delta 64
zcmaFc!}PX?X+s2~VTnO%o=Kr$ioQvTWuk?pSxT~{g`t6=VWO#ds;RN5Wul>xL29Cf
TMWV5hNs_s-LCWS%#wRTRpt2Me

delta 64
zcmaFc!}PX?X+s2~p?R8FrFm(7mcFS)ijhUCg@u`AYD!v)p-G})nyI-(lA&>urG<%M
TvW1y(YHFfoQsU-L#wRTRwN4ch

diff --git a/v5.10.x/.doctrees/pyclaw/rp.doctree b/v5.10.x/.doctrees/pyclaw/rp.doctree
index 904d95b0628b685e1d4c5484cc0ea8f4af64dfea..2b5933ac9ab9b1f297ec217425439303bfaa3a15 100644
GIT binary patch
delta 68
zcmZ3yn|1MS)(ruSh9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
X7Kz42CQ0VT1}V*rjN2O-8I@uH-`W%Q

delta 68
zcmZ3yn|1MS)(ruShURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
X$rfhDsi}#UNr}ykjN2O-8I@uH_+}LH

diff --git a/v5.10.x/.doctrees/pyclaw/solution.doctree b/v5.10.x/.doctrees/pyclaw/solution.doctree
index 6171ba6a283c4634fac5788ee41fe77c3268d0fc..b5dadc5d29436b64c4d1659394f16447a79caaa8 100644
GIT binary patch
delta 68
zcmey=%JQj|WkU?3VTnO%o=Kr$ioQvTWuk?pSxT~{g`t6=VWO#ds;RN5Wul>xL29Cf
XMWV5hNs_s-K}vHkurG<%M
XvW1y(YHFfoQety2=x?

diff --git a/v5.10.x/.doctrees/pyclaw/solvers.doctree b/v5.10.x/.doctrees/pyclaw/solvers.doctree
index 34bbcd0837fced9ce02a7e1e9bb9651a0756782e..be11bfdebd5035b9e3d3c28de199434993525b03 100644
GIT binary patch
delta 68
zcmX>;f$jJNwhfJph9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
Y7Kz42CQ0VT1}V*(7`Ja?WSrUt0PIK=8UO$Q

delta 68
zcmX>;f$jJNwhfJphURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
Y$rfhDsi}#UNr}yy7`Ja?WSrUt00iR}761SM

diff --git a/v5.10.x/.doctrees/pyclaw/started.doctree b/v5.10.x/.doctrees/pyclaw/started.doctree
index 504408f70c3449d022917b9525da7cf33c255a88..84e2c2b5f29e86e44d729e628f5ec680ebb9b52d 100644
GIT binary patch
delta 64
zcmZ2EfpO&o#tkWqh9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
U7Kz42CQ0VT1}U4TGEQ*=0D|um9smFU

delta 64
zcmZ2EfpO&o#tkWqhURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
U$rfhDsi}#UNr{`MGEQ*=0GEpt8UO$Q

diff --git a/v5.10.x/.doctrees/pyclaw/state.doctree b/v5.10.x/.doctrees/pyclaw/state.doctree
index 112873070f1506367cfdb6d0453c9e8c07068afc..70e79eda3f2cf42d6f67e356b8734cbd261cdb37 100644
GIT binary patch
delta 68
zcmaF%p5@tlmJMNyh9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
X7Kz42CQ0VT1}V+$jN9888RN|W9^(}Y

delta 68
zcmaF%p5@tlmJMNyhURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
X$rfhDsi}#UNr}zvjN9888RN|WH*XdP

diff --git a/v5.10.x/.doctrees/pyclaw/troubleshooting.doctree b/v5.10.x/.doctrees/pyclaw/troubleshooting.doctree
index 90a64de3616c43feb280bc2f7b7129f7d763fad7..02b9b63e31103797d0a1dfa52889913c84678a24 100644
GIT binary patch
delta 62
zcmbOqGCyQP45ML*L28~!p<#-?Ns48ng{4_avZaNgfuUidsd=iYv8iREp^-sqqJ>4G
Rv5`rVxv@dY=3d508US0{5?}xT

delta 62
zcmbOqGCyQP45OiWnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=3d508US#26I=iQ

diff --git a/v5.10.x/.doctrees/pyclaw/tutorial.doctree b/v5.10.x/.doctrees/pyclaw/tutorial.doctree
index 9ffb8f0df4d33076f9d78ce14be65d6d7d42625e..5893117bd211f9112cbd21646110713d73fe0707 100644
GIT binary patch
delta 64
zcmbOljp#tkuyh9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
T7Kz42CQ0VT1}U3+8CyL7cbpR2

delta 64
zcmbOljp#tkuyhURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
T$rfhDsi}#UNr{_#8CyL7j5rh5

diff --git a/v5.10.x/.doctrees/pyclaw/util.doctree b/v5.10.x/.doctrees/pyclaw/util.doctree
index 811e6a590056996d4ebca6adf83004c2e66b84b7..8534608a45a05d597321fe8fd9e80ef352104c6a 100644
GIT binary patch
delta 64
zcmZ2~h4G
Rv5`rVxv@dY=4!_6765Pg64w9#

delta 62
zcmdl~vZ-W)7o(whnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=4!_67662m6Vm_y

diff --git a/v5.10.x/.doctrees/python_path.doctree b/v5.10.x/.doctrees/python_path.doctree
index d96626d9299c56336384c3b99027bb1a075b3176..229604c93ec1da8759fcc603b7ba5a839dc0a4e6 100644
GIT binary patch
delta 64
zcmaFxpYg$e#tk8ih9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
T7Kz42CQ0VT1}U3c8Kdg}&lMC&

delta 64
zcmaFxpYg$e#tk8ihURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
T$rfhDsi}#UNr{_V8Kdg}4G
Rv5`rVxv@dY=5EF`IRJP&5}*J8

delta 62
zcmexp|IvO!6r-VenpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=5EF`IRK2;6Py45

diff --git a/v5.10.x/.doctrees/quick_surge.doctree b/v5.10.x/.doctrees/quick_surge.doctree
index 487de094c466c36fddd64209b0df9f7db929eed7..d0f8b8f641acb85c763f0b825dd6d10d2a6bc68b 100644
GIT binary patch
delta 62
zcmeA#>@VC9!f04xkeX*wXqcjJl46-?VQH3@VC9!f0roW>#rlnxCa_YLQ}Ok!oRKW|^9jmSSj4G
Rv5`rVxv@dY=1#^`B>;LA5~%}rqGeLz=1#^`B>;}G6QuwE

diff --git a/v5.10.x/.doctrees/refinement.doctree b/v5.10.x/.doctrees/refinement.doctree
index 05f11d507b7ff24cac6fec90553b4c9771516269..c9ec32878f6f224a67e2137bd8efefb726e5f8de 100644
GIT binary patch
delta 64
zcmeBdX6|fe-VnrSSYnWxXHsaGqHmI7nP_2YmXd5~VQ64zm}qLAYHDn1nP_NakeX;=
Tk!WmWl4Nddkg~a%k?jBgX%-TY

delta 64
zcmeBdX6|fe-VnrSXr5+PXJcWN4gZX<=fR
TY++`cnwn^tl(@N>k?jBgeX4G
Rv5`rVxv@dY=1#_TF#tlj5!C}rqGeLz=1#_TF#uOp643wv

diff --git a/v5.10.x/.doctrees/release_5_10_0.doctree b/v5.10.x/.doctrees/release_5_10_0.doctree
index 1f343424cf052e6368a5dc7e65b0aed2113ebc1a..a7344ac29ce7ed77f4d13592fd480e13ffe55e7c 100644
GIT binary patch
delta 64
zcmdnc$h-lFq8JTJ3{vw<3Jp{AO;RiqEiBDak}WL^4GawvP0dqHjZG~R4UG&^6D=$f
Sjg3r_%#96FHg_|s?gs#UP!k9M

delta 64
zcmdnc$h-lFq8JU$)66Q(OY^hzO)XN4EK)5j%q&w=(ozgf5)IQ#%`K7)jgu@bObnAP
S%#2f06D^YxH+M6t?gs#o>=Xn5

diff --git a/v5.10.x/.doctrees/release_5_1_0.doctree b/v5.10.x/.doctrees/release_5_1_0.doctree
index be2798d0e91e1544398a0914eadcbe685822c3eb..b17cd0cd3d5d0437928b79e228b4d9b07b73ec3d 100644
GIT binary patch
delta 64
zcmeCb&e(sQaYF>7VTnO%o=Kr$ioQvTWuk?pSxT~{g`t6=VWO#ds;RN5Wul>xL29Cf
TMWV5hNs_s-LCWS%Mz$;fl!g-a

delta 64
zcmeCb&e(sQaYF>7p?R8FrFm(7mcFS)ijhUCg@u`AYD!v)p-G})nyI-(lA&>urG<%M
TvW1y(YHFfoQsU-LMz$;fsUj2d

diff --git a/v5.10.x/.doctrees/release_5_2_0.doctree b/v5.10.x/.doctrees/release_5_2_0.doctree
index 844bb38da8335f0aaaa8b3f07bc81b720cfb5730..4900c1c392e4587dbdce04897ae2f1cfa1c02ab7 100644
GIT binary patch
delta 64
zcmbQTopH)`#tjjSh9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
T7Kz42CQ0VT1}U368M&hXhmjJs

delta 64
zcmbQTopH)`#tjjShURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
T$rfhDsi}#UNr{^~8M&hXoGlZv

diff --git a/v5.10.x/.doctrees/release_5_2_1.doctree b/v5.10.x/.doctrees/release_5_2_1.doctree
index dc9d870df281a22661f07895b0e75c07f2d7fd7f..3ebabb76aaa5dc6448c018fef37f25864879f48d 100644
GIT binary patch
delta 62
zcmdl{yQ6kP1fyYzL28~!p<#-?Ns48ng{4_avZaNgfuUidsd=iYv8iREp^-sqqJ>4G
Rv5`rVxv@dY=1xX^TL5`j5{>`>

delta 62
zcmdl{yQ6kP1f!vOnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=1xX^TL6vp6N&%;

diff --git a/v5.10.x/.doctrees/release_5_2_2.doctree b/v5.10.x/.doctrees/release_5_2_2.doctree
index c1a2d4c1e2faae8a02c5caa5bd9f2b6e54082d96..a37dc9d735614d27e436a252a946e115f931ae62 100644
GIT binary patch
delta 64
zcmZ3}%($kRaYF>7VTnO%o=Kr$ioQvTWuk?pSxT~{g`t6=VWO#ds;RN5Wul>xL29Cf
TMWV5hNs_s-LCWS%Mr8*8dSeoM

delta 64
zcmZ3}%($kRaYF>7p?R8FrFm(7mcFS)ijhUCg@u`AYD!v)p-G})nyI-(lA&>urG<%M
TvW1y(YHFfoQsU-LMr8*8j{g&P

diff --git a/v5.10.x/.doctrees/release_5_3_0.doctree b/v5.10.x/.doctrees/release_5_3_0.doctree
index 0ee21511ac80dc098aad6a9d8b4a2944435e6b07..7613f55ee077f232acd64d02a719d83caa67e542 100644
GIT binary patch
delta 64
zcmX@Hh3Ui=rVSB{h9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
U7Kz42CQ0VT1}U368TZcs0HLE43jhEB

delta 64
zcmX@Hh3Ui=rVSB{hURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
U$rfhDsi}#UNr{^~8TZcs0Jc9B2LJ#7

diff --git a/v5.10.x/.doctrees/release_5_3_1.doctree b/v5.10.x/.doctrees/release_5_3_1.doctree
index c1c375168b00b7c7d43177c7cc28d051c47ad110..b81f9396096f6d9b7a56df07bb43d7e90427201f 100644
GIT binary patch
delta 64
zcmX?eit)@T#tjjSh9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
U7Kz42CQ0VT1}U3684o7|0Ih=*3;+NC

delta 64
zcmX?eit)@T#tjjShURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
U$rfhDsi}#UNr{^~84o7|0Ky*?2mk;8

diff --git a/v5.10.x/.doctrees/release_5_4_0.doctree b/v5.10.x/.doctrees/release_5_4_0.doctree
index 29cf79d47940ce225dd7b7d4d152771b66a0009f..3f77a55e502195c5c65a11a471c1493958bc5e4f 100644
GIT binary patch
delta 64
zcmZ4chiUB}rVSB{h9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
U7Kz42CQ0VT1}U368JFw<0Ji!RZU6uP

delta 64
zcmZ4chiUB}rVSB{hURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
U$rfhDsi}#UNr{^~8JFw<0LzvYY5)KL

diff --git a/v5.10.x/.doctrees/release_5_4_1.doctree b/v5.10.x/.doctrees/release_5_4_1.doctree
index dc4c253b2a46ca74a6b67b9493e541c3dd4b5dca..733e44d5f42ff2a50184b807bae487e277e2931d 100644
GIT binary patch
delta 64
zcmcclfbr%7#tjjSh9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
U7Kz42CQ0VT1}U368874k0KStHY5)KL

delta 64
zcmcclfbr%7#tjjShURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
U$rfhDsi}#UNr{^~8874k0MjoOW&i*H

diff --git a/v5.10.x/.doctrees/release_5_5_0.doctree b/v5.10.x/.doctrees/release_5_5_0.doctree
index 37c763389b5d6855f3615d0690e9bf01e9e23002..dcc045de89f0bf19243ec0dea310aa257d2639d0 100644
GIT binary patch
delta 64
zcmezViTV2{<_!^yh9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
U7Kz42CQ0VT1}U368Q*;e0N0ikbpQYW

delta 64
zcmezViTV2{<_!^yhURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
U$rfhDsi}#UNr{^~8Q*;e0PHdraR2}S

diff --git a/v5.10.x/.doctrees/release_5_6_0.doctree b/v5.10.x/.doctrees/release_5_6_0.doctree
index bd0a837d1cf5be8df15a8911637977b12a2ac0d8..edfda18deff44a005b1785d0176de1fb2cb9ce88 100644
GIT binary patch
delta 64
zcmex0lj+w?rVSB{h9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
T7Kz42CQ0VT1}U3684J4stZNhA

delta 64
zcmex0lj+w?rVSB{hURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
T$rfhDsi}#UNr{^~84J4s!3PxD

diff --git a/v5.10.x/.doctrees/release_5_6_1.doctree b/v5.10.x/.doctrees/release_5_6_1.doctree
index 50f5cab33349cd063370da785b6aa3fb18957485..60daf9df024e6f9f4a0dbe30f6c57c9b2758b09e 100644
GIT binary patch
delta 64
zcmX@HkMYDl#tjjSh9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
U7Kz42CQ0VT1}U368TZEm0HwVX;s5{u

delta 64
zcmX@HkMYDl#tjjShURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
U$rfhDsi}#UNr{^~8TZEm0J>Qe-T(jq

diff --git a/v5.10.x/.doctrees/release_5_7_0.doctree b/v5.10.x/.doctrees/release_5_7_0.doctree
index 82254a0327bfb86d10e15fae5fc3c2ca745f00ea..60772f6056a632fa607d78c3b4b46702a4efa2d5 100644
GIT binary patch
delta 64
zcmdlmlX(LWMKBtc7^LQz6dI=Jo1|DKT3DK;BwJb-8W4Eo
Sm>H+0CR!#XZti4MKMeq#3KTv7

diff --git a/v5.10.x/.doctrees/release_5_7_1.doctree b/v5.10.x/.doctrees/release_5_7_1.doctree
index 0b2eda2383e91881875fed59e795a4890ba38d58..2d1ca48b2df7b2c39c830522b55e5d609f706bc8 100644
GIT binary patch
delta 64
zcmZo)$=JS7VTnO%o=Kr$ioQvTWuk?pSxT~{g`t6=VWO#ds;RN5Wul>xL29Cf
TMWV5hNs_s-LCWS%#(zNod|VT1

delta 64
zcmZo)$=JS7p?R8FrFm(7mcFS)ijhUCg@u`AYD!v)p-G})nyI-(lA&>urG<%M
TvW1y(YHFfoQsU-L#(zNokoXj4

diff --git a/v5.10.x/.doctrees/release_5_8_0.doctree b/v5.10.x/.doctrees/release_5_8_0.doctree
index 53141f9129a5864de436ab17349b12caa5a0bb9e..36906d0b0058f6fe334346357f33e0e84e8ca3da 100644
GIT binary patch
delta 64
zcmZp^!qj|)X+s2~VTnO%o=Kr$ioQvTWuk?pSxT~{g`t6=VWO#ds;RN5Wul>xL29Cf
TMWV5hNs_s-LCWS%#;O$nj@T27

delta 64
zcmZp^!qj|)X+s2~p?R8FrFm(7mcFS)ijhUCg@u`AYD!v)p-G})nyI-(lA&>urG<%M
TvW1y(YHFfoQsU-L#;O$nqjVIA

diff --git a/v5.10.x/.doctrees/release_5_8_1.doctree b/v5.10.x/.doctrees/release_5_8_1.doctree
index 53e0db97f8afc079332b3daad13c5e8724c80e6c..fe8147dfc3a6b390fe2de1497fadf694fcbc109c 100644
GIT binary patch
delta 64
zcmeB~%-A!TaYF>7VTnO%o=Kr$ioQvTWuk?pSxT~{g`t6=VWO#ds;RN5Wul>xL29Cf
TMWV5hNs_s-LCWS%MrIEHayt@3

delta 64
zcmeB~%-A!TaYF>7p?R8FrFm(7mcFS)ijhUCg@u`AYD!v)p-G})nyI-(lA&>urG<%M
TvW1y(YHFfoQsU-LMrIEHhSw86

diff --git a/v5.10.x/.doctrees/release_5_8_2.doctree b/v5.10.x/.doctrees/release_5_8_2.doctree
index 6d4a01bfa0cf4026b5e1d09ddfb568156236aca6..1f2d87e86e967bfe02e76684dc29fb64c8fcdf3b 100644
GIT binary patch
delta 64
zcmZqZU~K4M+z`QNSYnWxXHsaGqHmI7nP_2YmXd5~VQ64zm}qLAYHDn1nP_NakeX;=
Tk!WmWl4Nddkg~axvD^s&XZR9>

delta 64
zcmZqZU~K4M+z`QNXr5+PXJcWN4gZX<=fR
TY++`cnwn^tl(@N*vD^s&e3TP^

diff --git a/v5.10.x/.doctrees/release_5_9_0.doctree b/v5.10.x/.doctrees/release_5_9_0.doctree
index b8926d6325a10a1a9a40f685182145d05500e958..e0cdae05022b4e296419248038de2fcc63b964f6 100644
GIT binary patch
delta 64
zcmeyjhUwoLrVSB{h9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
U7Kz42CQ0VT1}U368NW^e0JxD9nE(I)

delta 64
zcmeyjhUwoLrVSB{hURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
U$rfhDsi}#UNr{^~8NW^e0L?8Gl>h($

diff --git a/v5.10.x/.doctrees/release_5_9_1.doctree b/v5.10.x/.doctrees/release_5_9_1.doctree
index 24ce3b08df1380380f400f47e377e89d99bd7c55..4aa4125fa2747198c78d98ecd06b6dd67dc4c7d2 100644
GIT binary patch
delta 64
zcmdnCnQ7Z*rVSB{h9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
U7Kz42CQ0VT1}U368Fgm>0GB!wQvd(}

delta 64
zcmdnCnQ7Z*rVSB{hURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
U$rfhDsi}#UNr{^~8Fgm>0ISv%PXGV_

diff --git a/v5.10.x/.doctrees/release_5_9_2.doctree b/v5.10.x/.doctrees/release_5_9_2.doctree
index ba9c33a4d5d73b9077cc379e81e95a43b7669609..5d6f9e58c251fb37beb585e613bf7e372f605aab 100644
GIT binary patch
delta 64
zcmZ3#g>n5B#tjjSh9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
U7Kz42CQ0VT1}U368J9%>0F;9hegFUf

delta 64
zcmZ3#g>n5B#tjjShURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
U$rfhDsi}#UNr{^~8J9%>0I44odH?_b

diff --git a/v5.10.x/.doctrees/releases.doctree b/v5.10.x/.doctrees/releases.doctree
index 64e1736b13949a9b11da711bcaeb63eeca43d9f0..8e5901491c475f7e09e76ed9d3ae28e87cd54d0d 100644
GIT binary patch
delta 306
zcmdnf#I&@TiKT&c>a2|{UW|q%2B~=_g@!5mCMlMQ7M5ly$(9y|28M=-rsk=p#-^5u
zhDHXdi53=##zrPd=Eepoo9h`bOEVTvJ|HW_=bKoRoS|T3siRGt1PJv=l>=M8h;wbBiQH
z<0MN96T@T+Gvn0MM9ZYa&Gn3zrR8F*ic-_85{goDQWJ|)<4xlY4dM+F6cluI6+)aG
zCkNV!F-1g7KB%Syq7-9=Nz)1x@qP)S}kB4SEuhFr$0423LyCI*Jm
zqzrD&#woQ^G%{FwR3xL29Cf
TMWV5hNs_s-LCWS@#?yxZi&YcY

delta 64
zcmX@n#eAZRd4mt5p?R8FrFm(7mcFS)ijhUCg@u`AYD!v)p-G})nyI-(lA&>urG<%M
TvW1y(YHFfoQsU-X#?yxZpYasb

diff --git a/v5.10.x/.doctrees/riemann/Shallow_water_Riemann_solvers.doctree b/v5.10.x/.doctrees/riemann/Shallow_water_Riemann_solvers.doctree
index 3ebf09711aa5252059e4f87a48c607b7fc71c38a..c7e0101904ad4a724b661775465e6c7807eb4213 100644
GIT binary patch
delta 73
zcmZo#!_>5fX+s60S&2bvo=Kr$ioQvTWuk?pSxT~{g`t6=VWO#ds;RN5Wul>xL29Cf
dMWV5hNs_s-L5hA#ezN}LgI%hdFEi>-0RTU%7U2K@

delta 73
zcmZo#!_>5fX+s60nR%L7rFm(7mcFS)ijhUCg@u`AYD!v)p-G})nyI-(lA&>urG<%M
dvW1y(YHFfoQlfrJezN}LgI%hdFEi>-0RUYi7u^5=

diff --git a/v5.10.x/.doctrees/ruled_rectangles.doctree b/v5.10.x/.doctrees/ruled_rectangles.doctree
index 43dc023fed2a83f8f0be58dad7c26692fa67fa26..fdd1a6855a4b4f8dd28a21e5aeeea0fd613fb75d 100644
GIT binary patch
delta 68
zcmaDjo#o+lmJM-?h9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
X7Kz42CQ0VT1}V+`jNAJe8H2b0@jVnU

delta 68
zcmaDjo#o+lmJM-?hURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
X$rfhDsi}#UNr}z4G
Rv5`rVxv@dY=6c3TO8}Ba6EFY(

delta 62
zcmexS`lED%AETjpnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=6c3TO8}C-?t95(5AL

delta 62
zcmeD3=#rlnxCa_YLQ}Ok!oRKW|^9jmSSj@WF68``I

diff --git a/v5.10.x/.doctrees/setenv.doctree b/v5.10.x/.doctrees/setenv.doctree
index 7a947b98ea29a6976c531a41570cc98a1769cd88..80d9af2fff7f05df052d5670402c64ddd2578f36 100644
GIT binary patch
delta 62
zcmdn*x8HAr7o%Z`L28~!p<#-?Ns48ng{4_avZaNgfuUidsd=iYv8iREp^-sqqJ>4G
Rv5`rVxv@dY=4!?xssLnS5}yD7

delta 62
zcmdn*x8HAr7o(whnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=4!?xssMQY6Po}4

diff --git a/v5.10.x/.doctrees/setplot.doctree b/v5.10.x/.doctrees/setplot.doctree
index 55a8dfc5b84d29c4090b6ebe33f721ea41109870..3ec125cdd25fc1828a361e4df49137f90cc27c6f 100644
GIT binary patch
delta 64
zcmZ3rhH=#z#tlA

diff --git a/v5.10.x/.doctrees/setrun.doctree b/v5.10.x/.doctrees/setrun.doctree
index 82b319c12726fd74ac82029861058578c596045d..cfbab8bc5c3e4679a547fb0838b18ac5a771916d 100644
GIT binary patch
delta 68
zcmezKm*vl2mJMEvh9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
X7Kz42CQ0VT1}V+ejN7Xj85?Z@E>0C#

delta 68
zcmezKm*vl2mJMEvhURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
X$rfhDsi}#UNr}zXjN7Xj85?Z@M%ors

diff --git a/v5.10.x/.doctrees/setrun_amrclaw.doctree b/v5.10.x/.doctrees/setrun_amrclaw.doctree
index 2830a7260677b7db252ebf5bb00a39cf63f9795c..4fcd56ccc008d3de33187a9db9e6899f5ec56a73 100644
GIT binary patch
delta 64
zcmX@}is{TNrVUYyh9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
U7Kz42CQ0VT1}U4n84qp-0KOs=pa1{>

delta 64
zcmX@}is{TNrVUYyhURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
U$rfhDsi}#UNr{`g84qp-0Mfn{oB#j-

diff --git a/v5.10.x/.doctrees/setrun_amrclaw_sample.doctree b/v5.10.x/.doctrees/setrun_amrclaw_sample.doctree
index 8542065ddb4ede729ec9feadfd355a7b5fd60c2f..350c900837f3db6791c1d54391ab7f8c10d4f892 100644
GIT binary patch
delta 64
zcmZp?z}R?!aYF{9VTnO%o=Kr$ioQvTWuk?pSxT~{g`t6=VWO#ds;RN5Wul>xL29Cf
TMWV5hNs_s-LCWTtj2USFj^h(b

delta 64
zcmZp?z}R?!aYF{9p?R8FrFm(7mcFS)ijhUCg@u`AYD!v)p-G})nyI-(lA&>urG<%M
TvW1y(YHFfoQsU;Bj2USFqkj}e

diff --git a/v5.10.x/.doctrees/setrun_geoclaw.doctree b/v5.10.x/.doctrees/setrun_geoclaw.doctree
index caa5561d12bd401a638a0c3e9155b034b549a7c5..16cccdcfe6e555a01a4ec9536f2ec2394a8e6731 100644
GIT binary patch
delta 68
zcmX?mkoD|A)(ugNh9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
X7Kz42CQ0VT1}V+mjN7{z8J*$*`{fju

delta 68
zcmX?mkoD|A)(ugNhURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
X$rfhDsi}#UNr}zfjN7{z8J*$*6o3_z

diff --git a/v5.10.x/.doctrees/setrun_sample.doctree b/v5.10.x/.doctrees/setrun_sample.doctree
index a8debf52f15647791ff9ac7f798959421445339d..588a0bcdeab3ee2cdadb7d8e56817230dda7cc09 100644
GIT binary patch
delta 64
zcmX@p&v>SvaYF>7VTnO%o=Kr$ioQvTWuk?pSxT~{g`t6=VWO#ds;RN5Wul>xL29Cf
TMWV5hNs_s-LCWS%MrStwkPQ;~

delta 64
zcmX@p&v>SvaYF>7p?R8FrFm(7mcFS)ijhUCg@u`AYD!v)p-G})nyI-(lA&>urG<%M
TvW1y(YHFfoQsU-LMrStwq^T42

diff --git a/v5.10.x/.doctrees/sharing.doctree b/v5.10.x/.doctrees/sharing.doctree
index 8c3f6984ebf81ec095da267c947c2a014f32a431..cf18d4d564b4f8cfb95f1a4dab66a2d338da8126 100644
GIT binary patch
delta 62
zcmeCM>#*D4!)RDykeX*wXqcjJl46-?VQH3#*D4!)R!pW>#rlnxCa_YLQ}Ok!oRKW|^9jmSSj4G
Rv5`rVxv@dY=1#^uDFAlq5}W`4

delta 62
zcmexv{@r{-1f!vOnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=1#^uDFBOw6PN%1

diff --git a/v5.10.x/.doctrees/sphinxdoc.doctree b/v5.10.x/.doctrees/sphinxdoc.doctree
index 38b29552189b2889ac00d9d6744817aee19cf215..12e65dcbf11f6ab8099963158bac3456265ceaf3 100644
GIT binary patch
delta 62
zcmZ3kzFd7n0Ha}vL28~!p<#-?Ns48ng{4_avZaNgfuUidsd=iYv8iREp^-sqqJ>4G
Rv5`rVxv@dY=0-*}Apl0n5qtmu

delta 62
zcmZ3kzFd7n0HdLKnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=0-*}Apl!t5_kXr

diff --git a/v5.10.x/.doctrees/src1d_defaults.doctree b/v5.10.x/.doctrees/src1d_defaults.doctree
index fb2c17ac42a99b174781f5e23ccee03fcaa54564..cdf9f36e751d8474f5f7d93881e1e5df501f6580 100644
GIT binary patch
delta 62
zcmca&f5m=76r*8@L28~!p<#-?Ns48ng{4_avZaNgfuUidsd=iYv8iREp^-sqqJ>4G
Rv5`rVxv@dY=59t$IRI)e5=j66

delta 62
zcmca&f5m=76r-VenpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=59t$IRJjk6GZ?3

diff --git a/v5.10.x/.doctrees/src_defaults.doctree b/v5.10.x/.doctrees/src_defaults.doctree
index 8d83b5a4d8e1705ef2e908dec3ffa4db41ac6581..3bd702cc007af35fab8fc6eed9427bb0424463b4 100644
GIT binary patch
delta 62
zcmX@)amZss7^7i{L28~!p<#-?Ns48ng{4_avZaNgfuUidsd=iYv8iREp^-sqqJ>4G
Rv5`rVxv@dY=61&2N&scY5~TnD

delta 62
zcmX@)amZss7^9(inpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=61&2N&tFe6QKYA

diff --git a/v5.10.x/.doctrees/storm_module.doctree b/v5.10.x/.doctrees/storm_module.doctree
index d53172dbd4675124ed0db0c7b5166d83c2f8b409..932e5546860799be711c33f0a101ea5d1678b9df 100644
GIT binary patch
delta 72
zcmZ2Kk7NBjjtyaqh9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
c7Kz42CQ0VT1}V+$jP31=jN988nO5)u04^C7Gynhq

delta 72
zcmZ2Kk7NBjjtyaqhURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
c$rfhDsi}#UNr}zvjP31=jN988nO5)u07{h>FaQ7m

diff --git a/v5.10.x/.doctrees/surgedata.doctree b/v5.10.x/.doctrees/surgedata.doctree
index cb1943a3cbaba855ae51bc775e5da1752ae69161..677db02ed85ea2607d341a1c1300a0d9d58a6ee2 100644
GIT binary patch
delta 62
zcmX>Sd?a{70Ha}vL28~!p<#-?Ns48ng{4_avZaNgfuUidsd=iYv8iREp^-sqqJ>4G
Rv5`rVxv@dY=0-+m4FGA25Sd?a{70HdLKnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=0-+m4FG;86FmR`

diff --git a/v5.10.x/.doctrees/testing.doctree b/v5.10.x/.doctrees/testing.doctree
index 496957cba828a15e696c7c2e5eb4efd86c53b965..70b75522d4e806d540d73e3ff9b6afbd1d123878 100644
GIT binary patch
delta 62
zcmezG^512H52Im;L28~!p<#-?Ns48ng{4_avZaNgfuUidsd=iYv8iREp^-sqqJ>4G
Rv5`rVxv@dY=2}K3MF4#y5=j66

delta 62
zcmezG^512H52K-ZnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=2}K3MF5e&6GZ?3

diff --git a/v5.10.x/.doctrees/timing.doctree b/v5.10.x/.doctrees/timing.doctree
index 90435e791f9024cc8c8da863efb18062d48ca5f9..b80fc4119cdc12c5d2965b5c54efc7bff4453e45 100644
GIT binary patch
delta 62
zcmeD2?eX2<#b{V!keX*wXqcjJl46-?VQH36#z;$5rhB$

delta 62
zcmeD2?eX2<#b{`rW>#rlnxCa_YLQ}Ok!oRKW|^9jmSSj6#!n+5`X{z

diff --git a/v5.10.x/.doctrees/topo.doctree b/v5.10.x/.doctrees/topo.doctree
index 2162948edd7d960612e0b51c23cb36610ea341ab..acb667a133c8e846f86ca4053c72107b8c7d4a87 100644
GIT binary patch
delta 68
zcmX@w!E&^NWrG`|VTnO%o=Kr$ioQvTWuk?pSxT~{g`t6=VWO#ds;RN5Wul>xL29Cf
XMWV5hNs_s-K}vHuurG<%M
XvW1y(YHFfoQetyC4G
Rv5`rVxv@dY=0?UJ+yH4}643wv

delta 62
zcmew<^;2p?0HdLKnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=0?UJ+yH(46U_hs

diff --git a/v5.10.x/.doctrees/topotools_module.doctree b/v5.10.x/.doctrees/topotools_module.doctree
index 6e73ffa1202a04744c63867836ac872a7e142be9..d25c7b435c334c5aad690783c8a3280b26f2fdac 100644
GIT binary patch
delta 72
zcmdn~ifj8Tt_^XFh9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
c7Kz42CQ0VT1}V+`jP3o5jNAJenO1BD0AN)XrT_o{

delta 72
zcmdn~ifj8Tt_^XFhURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
c$rfhDsi}#UNr}zN@#tlAN@#tlAJcWN4gZX<=fR
TY++`cnwn^tl(@N*vEd*9frb4G
Rv5`rVxv@dY=5EFUIRJeV621Tc

delta 62
zcmexu|J!~;6r-VenpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=5EFUIRKHb6S@EZ

diff --git a/v5.10.x/.doctrees/vm.doctree b/v5.10.x/.doctrees/vm.doctree
index 1afb97a078bd1e85a28e021018a1f591609d594d..bdf43388e642683273127b308633101e7bc7f7ab 100644
GIT binary patch
delta 62
zcmX@5c1mr76Qf~?L28~!p<#-?Ns48ng{4_avZaNgfuUidsd=iYv8iREp^-sqqJ>4G
Rv5`rVxv@dY=3>U{f&f(t5>x;H

delta 62
zcmX@5c1mr76QiMdnpvfJX?~WzsYQyBMXH5`nPqB9T8g1bqG6h;xkZwpagwEliD9yZ
RnQ>}rqGeLz=3>U{f&giz6HovE

diff --git a/v5.10.x/.doctrees/wp_algorithms.doctree b/v5.10.x/.doctrees/wp_algorithms.doctree
index 32697b7c085b17a2c0c4d7b79c62c3a54ef947ba..ac742ed8127995daf6165b8e6c56f814c423656a 100644
GIT binary patch
delta 64
zcmaEGlkve##tjjSh9w56c_xL1Df%WUmWdXYW+};*7KR3fhKZ);siwxJmWhT&2C0b_
T7Kz42CQ0VT1}U368N;&yy{r@N

delta 64
zcmaEGlkve##tjjShURHzmFA`SS^B0HDMl8l78YifsVQkGh9-%IX{P2DNruKrmKG+4
T$rfhDsi}#UNr{^~8N;&y(nu8Q

diff --git a/v5.10.x/_sources/about.rst.txt b/v5.10.x/_sources/about.rst.txt
index ecaf8a148..2b99d1464 100644
--- a/v5.10.x/_sources/about.rst.txt
+++ b/v5.10.x/_sources/about.rst.txt
@@ -117,8 +117,8 @@ Citing this work
 If you use Clawpack in publications, please cite the software itself as
 well, with a citation similar to the following::
 
-    Clawpack Development Team (2020), Clawpack Version 5.7.1,
-    http://www.clawpack.org, doi: 10.5281/zenodo.4025432
+    Clawpack Development Team (2024), Clawpack Version 5.10.0,
+    http://www.clawpack.org, doi: 10.5281/zenodo.10896214
 
 Here's the bibtex::
 
@@ -126,9 +126,9 @@ Here's the bibtex::
         title={Clawpack software}, 
         author={{Clawpack Development Team}}, 
         url={http://www.clawpack.org}, 
-        note={Version 5.7.1},
-        doi={https://doi.org/10.5281/zenodo.4025432},
-        year={2020}}
+        note={Version 5.10.0},
+        doi={https://doi.org/10.5281/zenodo.10896214},
+        year={2024}}
 
 Please fill in the version number that you used, and its year, with the
 appropriate DOI from `Zenodo `_, if available.  
diff --git a/v5.10.x/_sources/changes_to_master.rst.txt b/v5.10.x/_sources/changes_to_master.rst.txt
index cfb3f90b3..6bec44867 100644
--- a/v5.10.x/_sources/changes_to_master.rst.txt
+++ b/v5.10.x/_sources/changes_to_master.rst.txt
@@ -3,12 +3,12 @@
 .. _changes_to_master:
 
 ===============================
-Changes to master since v5.9.2
+Changes to master since v5.10.0
 ===============================
 
 
 Follow the links to see changes that have been made to the master branch of
-each repository since the last release (v5.9.2) on November 4, 2023.
+each repository since the last release (v5.10.0) on March 29, 2024.
 
 These changes should appear in the next release.  If you need them now,
 see :ref:`developers` for instructions on cloning and installing from the
@@ -31,48 +31,48 @@ Changes to classic
 
 
 See `classic diffs
-`_
+`_
 
 Changes to clawutil
 -------------------
 
 
 See `clawutil diffs
-`_
+`_
 
 Changes to visclaw
 ------------------
 
  
 See `visclaw diffs
-`_
+`_
 
 Changes to riemann
 ------------------
 
 
 See `riemann diffs
-`_
+`_
 
 Changes to amrclaw
 ------------------
 
 
 See `amrclaw diffs
-`_
+`_
 
 Changes to geoclaw
 ------------------
 
 
-See `geoclaw diffs `_
+See `geoclaw diffs `_
 
 
 Changes to PyClaw
 ------------------
 
 
-See `pyclaw diffs `_
+See `pyclaw diffs `_
 
 ===========================
 Other Clawpack Repositories
@@ -82,10 +82,10 @@ The repositories below are not included in the Clawpack tarfile or pip
 install, but changes to these repositories may also be of interest.
 
 - `apps diffs
-  `_
+  `_
 
 - `doc diffs
   `_
 
 - `docker-files diffs
-  `_
+  `_
diff --git a/v5.10.x/_sources/installing_fortcodes.rst.txt b/v5.10.x/_sources/installing_fortcodes.rst.txt
index 7f30a9c34..c52553afa 100644
--- a/v5.10.x/_sources/installing_fortcodes.rst.txt
+++ b/v5.10.x/_sources/installing_fortcodes.rst.txt
@@ -36,9 +36,9 @@ Download a tar file from one of these sources:
 
 After downloading a tar file you can do, e.g. ::
 
-    tar -xzf clawpack-v5.9.2.tar.gz
-    cd clawpack-v5.9.2
-    export CLAW=/full/path/to/clawpack-v5.9.2  # in bash
+    tar -xzf clawpack-v5.10.0.tar.gz
+    cd clawpack-v5.10.0
+    export CLAW=/full/path/to/clawpack-v5.10.0  # in bash
     
 The last command sets an environment variable when using the bash shell.
 The syntax may be different in other shells.  Replace `/full/path/to`
@@ -60,7 +60,7 @@ See :ref:`developers` for more details, but the basic commands are::
 
     git clone https://github.com/clawpack/clawpack.git
     cd clawpack
-    git checkout v5.9.2     # or an older version; `git tag -l` to list options
+    git checkout v5.10.0     # or an older version; `git tag -l` to list options
     git submodule init      # for repositories pyclaw, clawutil, visclaw, etc.
     git submodule update    # clones all the submodule repositories
     export CLAW=/full/path/to/clawpack    # in bash
diff --git a/v5.10.x/_sources/installing_pip.rst.txt b/v5.10.x/_sources/installing_pip.rst.txt
index c15ac6829..607c758d6 100644
--- a/v5.10.x/_sources/installing_pip.rst.txt
+++ b/v5.10.x/_sources/installing_pip.rst.txt
@@ -32,7 +32,7 @@ Clawpack is via::
 
 or, more specifically, ::
 
-    pip install --user clawpack==v5.9.2
+    pip install --user clawpack==v5.10.0
 
 or you can choose a previous version from the `PyPi history `__.
 
@@ -56,7 +56,7 @@ following command
 want to change anything in this command)**::  
 
     pip install --src=$HOME/clawpack_src --user --no-build-isolation -e \
-        git+https://github.com/clawpack/clawpack.git@v5.9.2#egg=clawpack
+        git+https://github.com/clawpack/clawpack.git@v5.10.0#egg=clawpack
         
         
 **Notes:** 
@@ -71,7 +71,7 @@ want to change anything in this command)**::
   :ref:`installing_options` if you want more control.
 
 - This will download Clawpack (via a git clone) into the directory
-  `$HOME/clawpack_src/clawpack-v5.9.2`.  The top 
+  `$HOME/clawpack_src/clawpack-v5.10.0`.  The top 
   installation directory can be changed by modifying the ``--src`` target 
   (or omit this part to put it in your current working directory).
   If you have already downloaded Clawpack via a different mechanism then
@@ -92,11 +92,11 @@ want to change anything in this command)**::
   
 - In order to use the Fortran codes within Clawpack (`classic`,
   `amrclaw`, or `geoclaw`), you should then set the environment
-  variable `CLAW` to point to the `clawpack-v5.9.2` directory within
+  variable `CLAW` to point to the `clawpack-v5.10.0` directory within
   the installation directory `$HOME/clawpack_src`, and `FC` to point
   to the desired Fortran compiler, e.g. in the bash shell::
   
-        export CLAW=$HOME/clawpack_src/clawpack-v5.9.2
+        export CLAW=$HOME/clawpack_src/clawpack-v5.10.0
         export FC=gfortran
 
 
diff --git a/v5.10.x/_sources/releases.rst.txt b/v5.10.x/_sources/releases.rst.txt
index 64df88ffd..8a0bf4e59 100644
--- a/v5.10.x/_sources/releases.rst.txt
+++ b/v5.10.x/_sources/releases.rst.txt
@@ -37,8 +37,8 @@ can also be referenced with the single DOI
 `10.17605/osf.io/kmw6h `__.
 See :ref:`citing` for more information on how best to cite Clawpack.
 
-* :ref:`release_5_10_0`  -- TBA
-  `[DOI 10.5281/zenodo.XX] `_
+* :ref:`release_5_10_0`  -- March 29, 2024
+  `[DOI 10.5281/zenodo.10896214] `_
 * :ref:`release_5_9_2`  -- November 4, 2023
   `[DOI 10.5281/zenodo.10076317] `_
 * :ref:`release_5_9_1`  -- October 2, 2023
diff --git a/v5.10.x/about.html b/v5.10.x/about.html
index efeefa0ac..be2cb671c 100644
--- a/v5.10.x/about.html
+++ b/v5.10.x/about.html
@@ -174,8 +174,8 @@ 
          License
          Citing this work
          
 
          If you use Clawpack in publications, please cite the software itself as
 well, with a citation similar to the following:
          
-
          Clawpack Development Team (2020), Clawpack Version 5.7.1,
-http://www.clawpack.org, doi: 10.5281/zenodo.4025432
+
          Clawpack Development Team (2024), Clawpack Version 5.10.0,
+http://www.clawpack.org, doi: 10.5281/zenodo.10896214
 
          
 
          
 
          Here’s the bibtex:
          
@@ -183,9 +183,9 @@ 
          Licensetitle={Clawpack software},
     author={{Clawpack Development Team}},
     url={http://www.clawpack.org},
-    note={Version 5.7.1},
-    doi={https://doi.org/10.5281/zenodo.4025432},
-    year={2020}}
+    note={Version 5.10.0},
+    doi={https://doi.org/10.5281/zenodo.10896214},
+    year={2024}}
 
          
 
          
 
          Please fill in the version number that you used, and its year, with the
diff --git a/v5.10.x/changes_to_master.html b/v5.10.x/changes_to_master.html
index 537c283d0..f5b489a84 100644
--- a/v5.10.x/changes_to_master.html
+++ b/v5.10.x/changes_to_master.html
@@ -6,7 +6,7 @@
     
     
 
-    Changes to master since v5.9.2 — Clawpack 5.10.x documentation
+    Changes to master since v5.10.0 — Clawpack 5.10.x documentation
     
     
     
@@ -67,7 +67,7 @@ 
          Navigation
          
                     modules |
          • 
         
        • Clawpack 5.10.x documentation »
          • 
-        
        • Changes to master since v5.9.2
          •  
+        
        • Changes to master since v5.10.0
          •  
       
        
     
      
 
@@ -76,10 +76,10 @@ 
    Navigation
    
         
    
           
    
             
-  
    
-
    Changes to master since v5.9.2
    
+  
    
+
    Changes to master since v5.10.0
    
 
    Follow the links to see changes that have been made to the master branch of
-each repository since the last release (v5.9.2) on November 4, 2023.
    
+each repository since the last release (v5.10.0) on March 29, 2024.
    
 
    These changes should appear in the next release.  If you need them now,
 see Developers’ Guide for instructions on cloning and installing from the
 master branch.
    
@@ -94,31 +94,31 @@ 
    General changes
 
    Changes to classic
    
-
    See classic diffs
    
+
    See classic diffs
    
 
    
 
    
 
    Changes to clawutil
    
-
    See clawutil diffs
    
+
    See clawutil diffs
    
 
    
 
    
 
    Changes to visclaw
    
-
    See visclaw diffs
    
+
    See visclaw diffs
    
 
    
 
    
 
    Changes to riemann
    
-
    See riemann diffs
    
+
    See riemann diffs
    
 
    
 
    
 
    Changes to amrclaw
    
-
    See amrclaw diffs
    
+
    See amrclaw diffs
    
 
    
 
    
 
    Changes to geoclaw
    
-
    See geoclaw diffs
    
+
    See geoclaw diffs
    
 
    
 
    
 
    Changes to PyClaw
    
-
    See pyclaw diffs
    
+
    See pyclaw diffs
    
 
    
 
    
 
    
@@ -126,9 +126,9 @@ 
    Other Clawpack Repositories
-
  • apps diffs
    • 
+
  • apps diffs
    • 
 
  • doc diffs
    • 
-
  • docker-files diffs
    • 
+
  • docker-files diffs
    • 
 
 
    
 
@@ -147,7 +147,7 @@ 
    Version 5.10.x
    
   
    
     
    Table of Contents
    • diff --git a/v5.10.x/installing_fortcodes.html b/v5.10.x/installing_fortcodes.html index a4dc35041..83631929f 100644 --- a/v5.10.x/installing_fortcodes.html +++ b/v5.10.x/installing_fortcodes.html @@ -106,9 +106,9 @@

    Navigation

    Citing this work)

    After downloading a tar file you can do, e.g.

    -
    tar -xzf clawpack-v5.9.2.tar.gz
-cd clawpack-v5.9.2
-export CLAW=/full/path/to/clawpack-v5.9.2  # in bash
+
    tar -xzf clawpack-v5.10.0.tar.gz
+cd clawpack-v5.10.0
+export CLAW=/full/path/to/clawpack-v5.10.0  # in bash
 
    
 
    
 
    The last command sets an environment variable when using the bash shell.
@@ -126,7 +126,7 @@ 
    Navigation
    
 See Developers’ Guide for more details, but the basic commands are:
    
 
    git clone https://github.com/clawpack/clawpack.git
 cd clawpack
-git checkout v5.9.2     # or an older version; `git tag -l` to list options
+git checkout v5.10.0     # or an older version; `git tag -l` to list options
 git submodule init      # for repositories pyclaw, clawutil, visclaw, etc.
 git submodule update    # clones all the submodule repositories
 export CLAW=/full/path/to/clawpack    # in bash
diff --git a/v5.10.x/installing_pip.html b/v5.10.x/installing_pip.html
index 98397a45b..e2e8417c0 100644
--- a/v5.10.x/installing_pip.html
+++ b/v5.10.x/installing_pip.html
@@ -104,7 +104,7 @@ 
    Navigation
    
 
    
 
    
 
    or, more specifically,
    
-
    pip install --user clawpack==v5.9.2
+
    pip install --user clawpack==v5.10.0
 
    
 
    
 
    or you can choose a previous version from the PyPi history.
    
@@ -122,7 +122,7 @@ 
    Navigation
    
 (you might want to first read the notes below to see if you
 want to change anything in this command):
    
 
    pip install --src=$HOME/clawpack_src --user --no-build-isolation -e \
-    git+https://github.com/clawpack/clawpack.git@v5.9.2#egg=clawpack
+    git+https://github.com/clawpack/clawpack.git@v5.10.0#egg=clawpack
 
    
 
    
 
    Notes:
    
@@ -135,7 +135,7 @@ 
    Navigation
    
 convert Fortran Riemann solvers to Python versions.  See
 installing_options if you want more control.
    
 
  • This will download Clawpack (via a git clone) into the directory
-$HOME/clawpack_src/clawpack-v5.9.2.  The top
+$HOME/clawpack_src/clawpack-v5.10.0.  The top
 installation directory can be changed by modifying the --src target
 (or omit this part to put it in your current working directory).
 If you have already downloaded Clawpack via a different mechanism then
@@ -152,10 +152,10 @@ 
    Navigation
    
 site-packages directory and delete everything else.)
    • 
 
  • In order to use the Fortran codes within Clawpack (classic,
 amrclaw, or geoclaw), you should then set the environment
-variable CLAW to point to the clawpack-v5.9.2 directory within
+variable CLAW to point to the clawpack-v5.10.0 directory within
 the installation directory $HOME/clawpack_src, and FC to point
 to the desired Fortran compiler, e.g. in the bash shell:
    
-
    export CLAW=$HOME/clawpack_src/clawpack-v5.9.2
+
    export CLAW=$HOME/clawpack_src/clawpack-v5.10.0
 export FC=gfortran
 
    
 
    
diff --git a/v5.10.x/objects.inv b/v5.10.x/objects.inv
index 3c3825d5d137f4b6952532e6620901e9398698ed..906168a7849905652bae1446c0c14e0db0f7dede 100644
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diff --git a/v5.10.x/release_5_10_0.html b/v5.10.x/release_5_10_0.html
index 20ba114cb..7f14c9021 100644
--- a/v5.10.x/release_5_10_0.html
+++ b/v5.10.x/release_5_10_0.html
@@ -82,7 +82,7 @@ 
    Navigation
    
 
    Permanent DOI: http://doi.org/10.5281/zenodo.XX
    
 
    Changes relative to Clawpack 5.9.2 (November 4, 2023) are shown below.
    
 
    To see more recent changes that are in the the master branch but not yet
-released, see Changes to master since v5.9.2.
    
+released, see Changes to master since v5.10.0.
    
 
    Follow the links to see changes that have been made to the master branch of
 each repository since the last release (v5.10.0) on XX.
    
 
    These changes should appear in the next release.  If you need them now,
diff --git a/v5.10.x/release_5_6_0.html b/v5.10.x/release_5_6_0.html
index 9c5ac72d9..4f9aa1a14 100644
--- a/v5.10.x/release_5_6_0.html
+++ b/v5.10.x/release_5_6_0.html
@@ -81,7 +81,7 @@ 
    Navigation
    
 
    Clawpack 5.6.0 was released on June 2, 2019.  See Installing Clawpack.
    
 
    Changes relative to Clawpack 5.5.0 (Aug 28, 2018) are shown below.
    
 
    To see more recent changes that are in the the master branch but not yet
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    Changes that are not backward compatible
    
 
    
diff --git a/v5.10.x/release_5_6_1.html b/v5.10.x/release_5_6_1.html
index 4938954fd..64755ec45 100644
--- a/v5.10.x/release_5_6_1.html
+++ b/v5.10.x/release_5_6_1.html
@@ -81,7 +81,7 @@ 
    Navigation
    
 
    Clawpack 5.6.1 was released on October 28, 2019. See Installing Clawpack.
    
 
    Changes relative to Clawpack 5.6.0 (June 2, 2019) are shown below.
    
 
    To see more recent changes that are in the the master branch but not yet
-released, see Changes to master since v5.9.2.
    
+released, see Changes to master since v5.10.0.
    
 
    
 
    Changes that are not backward compatible
    
 
    $CLAW/amrclaw/src/2d/amr_module.f90 has changed, so do a make new in
diff --git a/v5.10.x/release_5_7_0.html b/v5.10.x/release_5_7_0.html
index dead5ca19..cfdb5d035 100644
--- a/v5.10.x/release_5_7_0.html
+++ b/v5.10.x/release_5_7_0.html
@@ -83,7 +83,7 @@ 
    Navigation
    
 [DOI 10.5281/zenodo.3764278].
    
 
    Changes relative to Clawpack 5.6.1 (October 28, 2019) are shown below.
    
 
    To see more recent changes that are in the the master branch but not yet
-released, see Changes to master since v5.9.2.
    
+released, see Changes to master since v5.10.0.
    
 
    
 
    Python support
    
 
    As of v5.7.0 we are no longer supporting Python 2.7, and Python 3.x is
diff --git a/v5.10.x/release_5_7_1.html b/v5.10.x/release_5_7_1.html
index 32929a3b7..a4badd74e 100644
--- a/v5.10.x/release_5_7_1.html
+++ b/v5.10.x/release_5_7_1.html
@@ -83,7 +83,7 @@ 
    Navigation
    
 [DOI 10.5281/zenodo.4025432].
    
 
    Changes relative to Clawpack 5.7.0 (April 23, 2020) are shown below.
    
 
    To see more recent changes that are in the the master branch but not yet
-released, see Changes to master since v5.9.2.
    
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diff --git a/v5.10.x/release_5_8_0.html b/v5.10.x/release_5_8_0.html
index ad16f2636..32ae05e1a 100644
--- a/v5.10.x/release_5_8_0.html
+++ b/v5.10.x/release_5_8_0.html
@@ -82,7 +82,7 @@ 
      Navigation
      
 
      Permanent DOI: http://doi.org/10.5281/zenodo.4503024
      
 
      Changes relative to Clawpack 5.7.1 (Sept. 11, 2020) are shown below.
      
 
      To see more recent changes that are in the the master branch but not yet
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+released, see Changes to master since v5.10.0.
      
 
      
 
      Changes that are not backward compatible
      
 
        
diff --git a/v5.10.x/release_5_8_1.html b/v5.10.x/release_5_8_1.html
index b68c99bf1..3acb7e0d1 100644
--- a/v5.10.x/release_5_8_1.html
+++ b/v5.10.x/release_5_8_1.html
@@ -84,7 +84,7 @@ 
        Navigation
        
 
        Permanent DOI: http://doi.org/10.5281/zenodo.5595424
        
 
        Changes relative to Clawpack 5.8.0 (February 4, 2021) are shown below.
        
 
        To see more recent changes that are in the the master branch but not yet
-released, see Changes to master since v5.9.2.
        
+released, see Changes to master since v5.10.0.
        
 
        
 
        Changes that are not backward compatible
        
 
        
diff --git a/v5.10.x/release_5_8_2.html b/v5.10.x/release_5_8_2.html
index f78dc6d43..03fe1b8f7 100644
--- a/v5.10.x/release_5_8_2.html
+++ b/v5.10.x/release_5_8_2.html
@@ -82,7 +82,7 @@ 
        Navigation
        
 
        Permanent DOI: http://doi.org/10.5281/zenodo.5781749
        
 
        Changes relative to Clawpack 5.8.1 (October 19, 2021) are shown below.
        
 
        To see more recent changes that are in the the master branch but not yet
-released, see Changes to master since v5.9.2.
        
+released, see Changes to master since v5.10.0.
        
 
        
 
        Changes that are not backward compatible
        
 
        None.
        
diff --git a/v5.10.x/release_5_9_0.html b/v5.10.x/release_5_9_0.html
index 637c58070..9872da50c 100644
--- a/v5.10.x/release_5_9_0.html
+++ b/v5.10.x/release_5_9_0.html
@@ -82,7 +82,7 @@ 
        Navigation
        
 
        Permanent DOI: http://doi.org/10.5281/zenodo.7026045
        
 
        Changes relative to Clawpack 5.8.2 (December 14, 2021) are shown below.
        
 
        To see more recent changes that are in the the master branch but not yet
-released, see Changes to master since v5.9.2.
        
+released, see Changes to master since v5.10.0.
        
 
        Follow the links to see changes that have been made to the master branch of
 each repository since the last release (v5.9.0) on August 26, 2022.
        
 
        These changes should appear in the next release.  If you need them now,
diff --git a/v5.10.x/release_5_9_1.html b/v5.10.x/release_5_9_1.html
index 21d4510ea..9e1070650 100644
--- a/v5.10.x/release_5_9_1.html
+++ b/v5.10.x/release_5_9_1.html
@@ -82,7 +82,7 @@ 
        Navigation
        
 
        Permanent DOI: http://doi.org/10.5281/zenodo.8400237
        
 
        Changes relative to Clawpack 5.9.0 (August 26, 2022) are shown below.
        
 
        To see more recent changes that are in the the master branch but not yet
-released, see Changes to master since v5.9.2.
        
+released, see Changes to master since v5.10.0.
        
 
        Follow the links to see changes that have been made to the master branch of
 each repository since the last release (v5.9.1) on October 2, 2023.
        
 
        These changes should appear in the next release.  If you need them now,
diff --git a/v5.10.x/release_5_9_2.html b/v5.10.x/release_5_9_2.html
index 83bfb61e0..8907455d2 100644
--- a/v5.10.x/release_5_9_2.html
+++ b/v5.10.x/release_5_9_2.html
@@ -82,7 +82,7 @@ 
        Navigation
        
 
        Permanent DOI: http://doi.org/10.5281/zenodo.XXX
        
 
        Changes relative to Clawpack 5.9.2 (October 2, 2023) are shown below.
        
 
        To see more recent changes that are in the the master branch but not yet
-released, see Changes to master since v5.9.2.
        
+released, see Changes to master since v5.10.0.
        
 
        Follow the links to see changes that have been made to the master branch of
 each repository since the last release (v5.9.2) on November 4, 2023.
        
 
        These changes should appear in the next release.  If you need them now,
diff --git a/v5.10.x/releases.html b/v5.10.x/releases.html
index 3c61e42ea..cf2ac9bec 100644
--- a/v5.10.x/releases.html
+++ b/v5.10.x/releases.html
@@ -97,7 +97,7 @@ 
        Other notes:PyClaw changelog.
 Starting with v5.9.0, changes will be recorded in the release notes along
 with those for other repositories.
        
-
      • See Changes to master since v5.9.2 for changes to the master branch on Github
+
      • See Changes to master since v5.10.0 for changes to the master branch on Github
 that are not in the most recent release.
        • 
 
      • The “dev” branch of the
 documentation (selected under Versions on the menu
@@ -114,8 +114,8 @@ 
        Releases:10.17605/osf.io/kmw6h.
 See Citing this work for more information on how best to cite Clawpack.
        
 
          
-
        • v5.10.0 release notes  – TBA
-[DOI 10.5281/zenodo.XX]
          • 
+
        • v5.10.0 release notes  – March 29, 2024
+[DOI 10.5281/zenodo.10896214]
          • 
 
        • v5.9.2 release notes  – November 4, 2023
 [DOI 10.5281/zenodo.10076317]
          • 
 
        • v5.9.1 release notes  – October 2, 2023
diff --git a/v5.10.x/searchindex.js b/v5.10.x/searchindex.js
index 3618dfb10..fc29536ce 100644
--- a/v5.10.x/searchindex.js
+++ b/v5.10.x/searchindex.js
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26, 29, 30, 31, 32, 34, 37, 41, 42, 44, 47, 48, 49, 52, 57, 58, 59, 61, 62, 63, 64, 71, 73, 77, 82, 84, 94, 97, 98, 99, 104, 106, 109, 111, 115, 116, 118, 124, 126, 127, 137, 139, 143, 147, 148, 149, 150, 151, 152, 154, 158, 159, 162, 164, 166], "afteritem": [3, 29], "afterpatch": [3, 29], "There": [3, 6, 13, 24, 36, 39, 43, 55, 58, 59, 66, 70, 75, 77, 84, 85, 98, 105, 113, 126, 127, 147, 148, 154, 159, 160, 167, 169], "calcul": [3, 5, 6, 18, 19, 29, 32, 35, 37, 48, 51, 71, 75, 82, 94, 102, 104, 118, 120, 125, 164], "cd": [3, 13, 30, 38, 39, 40, 56, 58, 59, 61, 62, 84, 93, 96, 99, 105, 116, 160], "On": [3, 5, 13, 55, 76, 85, 126, 136, 142, 146, 167], "ylower": [3, 24, 29, 42, 89, 127, 150, 162, 164], "patchno": [3, 29], "out": [3, 16, 17, 26, 28, 31, 32, 34, 36, 37, 38, 39, 42, 47, 48, 49, 54, 56, 57, 58, 59, 62, 63, 64, 65, 66, 71, 75, 82, 85, 86, 88, 89, 91, 97, 98, 99, 100, 103, 108, 110, 111, 113, 116, 125, 127, 129, 130, 140, 142, 149, 150, 152, 158, 164, 165], "lower": [3, 24, 32, 34, 35, 41, 49, 57, 70, 77, 94, 99, 142, 144, 148, 150, 152, 162, 164, 166], "left": [3, 5, 10, 13, 16, 20, 27, 29, 32, 34, 57, 77, 84, 94, 101, 102, 108, 118, 126, 132, 135, 136, 137, 138, 139, 140, 143, 149, 162, 164, 166, 170], "mappedgrid": [3, 71], "map": [3, 16, 18, 31, 32, 42, 48, 63, 70, 71, 82, 86, 89, 94, 96, 101, 115, 123, 127, 132, 141, 164, 170], "mapc2p": [3, 27, 29, 49, 71, 89, 94, 132], "underli": [3, 55, 125], "requir": [3, 4, 16, 18, 19, 22, 24, 27, 29, 30, 32, 34, 36, 37, 38, 39, 43, 48, 49, 51, 52, 59, 62, 70, 71, 75, 78, 81, 84, 85, 88, 89, 94, 97, 100, 101, 104, 105, 106, 108, 109, 110, 115, 116, 118, 119, 120, 123, 125, 128, 130, 132, 135, 137, 140, 141, 142, 147, 148, 149, 150, 151, 152, 158, 159, 162, 165, 168, 170], "depend": [3, 13, 16, 30, 31, 32, 34, 37, 38, 39, 43, 44, 50, 52, 55, 66, 68, 71, 75, 82, 87, 97, 102, 103, 104, 109, 111, 115, 127, 144, 149, 151, 164, 165, 167, 170], "summar": [3, 30, 33, 115, 117, 167], "plotstyl": [3, 47, 82, 147], "anyth": [3, 6, 30, 31, 62, 67, 116, 127], "valid": [3, 52, 75, 91, 98, 103, 106, 125, 151, 158, 159, 164], "fmt": 3, "group": [3, 13, 26, 30, 32, 52, 93, 97, 99, 107, 124, 140], "solid": [3, 16, 55, 75, 101, 147, 148, 150, 152], "dash": [3, 99], "o": [3, 5, 17, 41, 42, 43, 70, 72, 82, 85, 86, 89, 97, 98, 107, 127, 150, 164, 167], "circl": [3, 51, 82, 118], "bo": 3, "blue": [3, 11, 42, 47, 63, 70, 82, 142, 164], "though": [3, 42, 78, 158, 162], "also": [3, 4, 5, 6, 7, 8, 9, 11, 12, 16, 17, 18, 19, 20, 22, 24, 25, 26, 27, 30, 31, 32, 34, 35, 36, 37, 38, 39, 40, 41, 42, 44, 45, 46, 47, 48, 49, 51, 52, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 66, 67, 70, 71, 75, 76, 77, 78, 81, 82, 84, 88, 90, 91, 94, 96, 97, 98, 99, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 118, 119, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 146, 148, 149, 150, 151, 152, 153, 156, 157, 158, 159, 160, 161, 162, 164, 165, 166, 167, 169, 170], "overrul": 3, "r": [3, 4, 6, 17, 30, 47, 51, 56, 58, 70, 71, 74, 82, 88, 92, 99, 101, 118, 140, 142, 147, 164, 170], "ff0000": [3, 63], "No": [3, 43, 55, 59, 71, 94, 104, 133, 140, 148, 151, 165], "extra": [3, 55, 141], "give": [3, 6, 9, 10, 13, 16, 17, 18, 19, 26, 30, 32, 34, 35, 36, 38, 39, 47, 49, 56, 63, 64, 70, 72, 75, 76, 77, 82, 84, 99, 100, 104, 116, 120, 124, 125, 129, 132, 142, 148, 151, 162, 164, 166], "polygon": [3, 7, 41, 55, 63, 130, 164], "curv": [3, 47, 81, 142], "fill_between": 3, "plot_var2": 3, "zero": [3, 16, 32, 34, 42, 44, 47, 63, 71, 72, 88, 101, 102, 106, 108, 132, 142, 143], "fill_wher": 3, "plotitem": [3, 29, 47, 82, 147], "mean": [3, 13, 24, 30, 34, 42, 47, 52, 56, 62, 71, 72, 98, 99, 115, 118, 140, 143, 148, 150, 152, 166], "map_2d_to_1d": 3, "In": [3, 5, 6, 8, 11, 12, 15, 16, 18, 19, 21, 22, 24, 29, 32, 34, 36, 41, 44, 47, 48, 49, 52, 55, 56, 57, 58, 59, 62, 63, 64, 66, 67, 70, 71, 72, 74, 75, 77, 78, 82, 83, 84, 88, 89, 94, 96, 97, 98, 99, 100, 101, 102, 104, 106, 109, 111, 112, 113, 115, 118, 119, 120, 123, 124, 125, 127, 128, 132, 136, 139, 140, 142, 144, 145, 146, 148, 149, 151, 156, 157, 162, 164, 165, 167, 170], "about": [3, 5, 7, 13, 14, 16, 18, 19, 24, 27, 35, 36, 37, 38, 39, 43, 49, 51, 52, 57, 59, 63, 66, 68, 71, 77, 83, 85, 88, 96, 97, 99, 104, 111, 116, 124, 128, 130, 135, 136, 140, 147, 149, 150, 151, 162, 165, 167, 170], "j": [3, 4, 5, 15, 17, 22, 24, 29, 35, 42, 56, 63, 70, 71, 77, 84, 96, 97, 115, 119, 120, 144, 145], "v": [3, 16, 27, 31, 32, 34, 36, 37, 51, 64, 67, 116, 124, 149, 162], "radiu": [3, 151, 158, 159, 164], "q0_vs_radiu": 3, "convert": [3, 24, 27, 32, 35, 37, 45, 51, 55, 62, 63, 66, 75, 78, 89, 96, 101, 109, 110, 127, 130, 136, 137, 148, 149, 158, 162, 166], "numpi": [3, 13, 32, 34, 36, 37, 42, 51, 70, 85, 87, 88, 89, 91, 94, 101, 106, 107, 108, 110, 116, 137, 141, 142, 150, 164, 165], "sqrt": [3, 34, 37, 49, 68, 88, 101, 102, 108, 150], "q0": [3, 101], "work": [3, 5, 8, 13, 16, 19, 21, 22, 24, 26, 27, 28, 30, 31, 34, 36, 38, 39, 43, 48, 52, 55, 56, 57, 58, 59, 60, 61, 62, 63, 70, 71, 74, 75, 76, 82, 85, 86, 87, 88, 90, 91, 92, 96, 97, 98, 99, 102, 104, 105, 110, 111, 113, 114, 115, 116, 118, 121, 122, 123, 124, 125, 126, 127, 130, 132, 133, 138, 140, 146, 147, 148, 149, 153, 159, 162, 165, 169], "symbol": [3, 71, 111], "best": [3, 4, 16, 24, 28, 30, 36, 44, 49, 55, 57, 59, 60, 66, 72, 74, 76, 81, 82, 97, 101, 113, 114, 115, 116, 127, 138, 140, 151, 155, 158, 162, 167], "descript": [3, 4, 6, 9, 24, 25, 27, 32, 36, 37, 63, 71, 75, 78, 81, 96, 97, 109, 113, 115, 137, 140, 141, 151, 158, 162, 170], "celledges_show": [3, 24], "draw": 3, "amr_celledges_show": 3, "level": [3, 6, 7, 16, 19, 25, 29, 31, 34, 36, 41, 42, 47, 48, 50, 51, 52, 55, 58, 59, 61, 62, 71, 72, 76, 77, 89, 91, 94, 96, 97, 98, 104, 111, 112, 115, 116, 119, 120, 124, 125, 127, 130, 139, 142, 143, 146, 148, 149, 150, 152, 161, 162, 164, 166, 167], "patchedges_show": [3, 24], "mostli": [3, 81, 96, 130, 137], "contour_level": [3, 164], "three": [3, 13, 17, 24, 32, 34, 37, 52, 55, 67, 71, 75, 99, 103, 109, 116, 142, 148, 151, 162, 164, 167], "contour_nlevel": 3, "contour_min": 3, "minimum": [3, 19, 34, 47, 55, 75, 108, 125, 151, 164], "contour_max": 3, "maximum": [3, 24, 32, 34, 35, 36, 48, 71, 72, 104, 108, 115, 119, 120, 127, 130, 148, 149, 150, 152, 158, 159], "contour_color": 3, "specif": [3, 5, 12, 19, 24, 30, 32, 47, 48, 49, 51, 55, 56, 62, 65, 67, 68, 77, 86, 87, 89, 91, 96, 97, 98, 102, 103, 109, 113, 125, 126, 127, 130, 147, 148, 149, 150, 152, 159, 162], "b": [3, 5, 17, 30, 32, 34, 35, 36, 37, 42, 47, 49, 56, 58, 59, 68, 72, 82, 104, 115, 123, 130, 142, 143, 144, 151, 164, 166], "0000ff": [3, 63], "colormap": [3, 32, 42, 50, 55, 70, 71, 81, 83, 124, 130, 164], "amr_contour_color": 3, "As": [3, 18, 19, 39, 42, 48, 49, 52, 58, 59, 63, 64, 88, 108, 110, 114, 118, 119, 130, 140, 141, 144, 151, 154, 160, 167], "black": [3, 47], "subsequ": [3, 10, 71], "both": [3, 16, 18, 19, 30, 32, 35, 36, 37, 38, 39, 41, 42, 47, 52, 57, 60, 62, 67, 70, 71, 75, 77, 89, 97, 98, 99, 104, 105, 115, 116, 123, 124, 127, 130, 135, 140, 141, 142, 144, 148, 149, 150, 152, 156, 162, 167], "fine": [3, 19, 34, 35, 36, 42, 49, 58, 74, 78, 96, 101, 115, 118, 125, 132, 142, 144, 148, 149, 151, 162, 167], "coars": [3, 34, 36, 55, 115, 118, 125, 132, 148, 162, 167], "anoth": [3, 19, 24, 34, 36, 42, 47, 51, 55, 62, 63, 77, 81, 85, 93, 104, 107, 116, 127, 158, 167], "refin": [3, 4, 5, 7, 8, 17, 19, 24, 36, 48, 49, 52, 55, 56, 57, 70, 71, 77, 78, 88, 125, 127, 128, 130, 132, 142, 144, 147, 148, 149, 150, 161, 162, 167], "region": [3, 6, 7, 13, 16, 19, 24, 34, 36, 41, 42, 48, 52, 53, 55, 63, 68, 72, 75, 78, 113, 118, 127, 130, 132, 143, 144, 149, 150, 154, 162, 164], "lack": 3, "hidden": [3, 66, 82], "blank": [3, 35, 63, 158], "coarser": [3, 16, 19, 57, 125, 144, 148, 149, 167], "easili": [3, 13, 30, 34, 55, 58, 71, 82, 89, 94, 105, 109, 116, 118, 130, 153], "contour_show": 3, "commonli": [3, 19, 71, 82, 84], "amr_contour_show": 3, "determin": [3, 5, 6, 32, 34, 37, 42, 47, 48, 49, 52, 54, 55, 58, 63, 72, 75, 82, 92, 94, 97, 102, 106, 111, 115, 120, 124, 125, 139, 142, 143, 147, 148, 149, 151, 164, 167], "whether": [3, 6, 13, 16, 24, 51, 57, 60, 62, 64, 65, 66, 71, 86, 94, 97, 98, 102, 103, 104, 115, 116, 125, 140, 142, 148, 149, 151, 164], "view": [3, 4, 24, 36, 38, 39, 47, 48, 49, 51, 55, 57, 58, 63, 77, 81, 83, 84, 88, 99, 105, 110, 123, 127, 153, 155], "finest": [3, 19, 34, 36, 42, 47, 72, 127, 161, 164], "contour_kwarg": [3, 164], "pcolor_cmap": [3, 55], "pcolor_cmin": 3, "pcolor_cmax": 3, "thei": [3, 5, 6, 13, 16, 18, 19, 26, 29, 30, 32, 34, 36, 41, 42, 45, 47, 49, 52, 55, 58, 59, 62, 63, 64, 67, 70, 71, 77, 81, 94, 96, 101, 104, 109, 115, 116, 125, 132, 144, 147, 151, 154, 158, 162, 164, 167], "chosen": [3, 31, 34, 41, 42, 49, 55, 57, 70, 108, 115, 132, 143, 149], "vari": [3, 15, 17, 27, 32, 42, 48, 49, 57, 68, 72, 101, 103, 123, 130, 140, 141, 143, 145, 149, 151, 170], "yield": [3, 18, 19], "veri": [3, 5, 16, 17, 18, 19, 24, 49, 52, 55, 59, 60, 63, 75, 82, 86, 89, 97, 98, 99, 100, 101, 104, 116, 118, 120, 124, 135, 142, 144, 148, 159, 162], "confus": [3, 57, 62, 111, 132, 140], "add_colorbar": [3, 32, 164], "ad": [3, 12, 16, 22, 24, 26, 27, 29, 31, 34, 36, 37, 44, 47, 51, 57, 58, 59, 62, 63, 64, 68, 71, 72, 75, 82, 87, 89, 92, 94, 95, 98, 99, 111, 112, 113, 115, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 133, 135, 136, 137, 139, 144, 148, 149, 151, 154, 158, 161, 164, 168], "imshow_cmap": 3, "imshow_cmin": 3, "imshow_cmax": 3, "hillshade_vertical_exagger": 3, "vertic": [3, 32, 41, 52, 55, 63, 70, 142, 143, 151, 164, 166], "exagger": 3, "calul": 3, "hillshade_azimuth_degre": 3, "light": [3, 55, 71, 115], "sourc": [3, 4, 17, 18, 19, 25, 27, 30, 32, 44, 48, 49, 55, 56, 58, 59, 61, 62, 63, 65, 67, 68, 81, 86, 89, 93, 94, 95, 104, 105, 107, 108, 109, 113, 114, 116, 118, 125, 126, 127, 136, 137, 141, 143, 148, 150, 151, 152, 155, 156, 157, 158, 162], "azimuth": 3, "angl": [3, 16, 32, 51, 75], "315": 3, "northwest": 3, "360": [3, 51, 55, 75], "degre": [3, 32, 49, 51, 55, 63, 72, 75], "clockwis": [3, 34, 51, 75, 164], "north": [3, 34, 42, 49, 51, 70, 75], "recommend": [3, 4, 18, 19, 32, 34, 36, 38, 39, 58, 59, 60, 62, 76, 81, 90, 94, 96, 97, 99, 100, 104, 105, 107, 108, 115, 127, 135, 137, 148, 150, 152, 168], "proper": [3, 6, 15, 42, 47, 56, 57, 58, 59, 63, 68, 70, 71, 97, 109, 119, 125, 145, 149, 150, 156, 157, 158, 167], "interpret": [3, 32, 57, 75, 97, 127, 162], "peopl": [3, 4, 12, 13, 86], "hillshade_altitude_degre": 3, "altitud": 3, "horizon": 3, "45": [3, 104], "90": [3, 27, 32, 49, 55, 67, 75, 105, 107, 136], "hillshade_latlon": 3, "correct": [3, 18, 19, 22, 30, 44, 58, 59, 67, 68, 71, 82, 88, 94, 97, 99, 103, 109, 119, 120, 124, 144, 148, 150, 151, 152], "unit": [3, 32, 49, 50, 51, 56, 75, 94, 125, 136, 158], "z": [3, 42, 57, 63, 70, 71, 88, 94, 102, 108, 142, 148, 149, 162, 164], "111200": 3, "reflect": [3, 4, 5, 16, 30, 115, 127, 148, 150, 152], "relat": [3, 7, 19, 24, 26, 58, 78, 102, 113, 126, 130, 132, 143], "pre": [3, 13, 35, 59, 90, 97], "pend": 3, "amr_": [3, 7], "whose": [3, 49, 82, 89, 101, 102, 144, 148, 149, 164], "origin": [3, 6, 13, 16, 18, 19, 22, 30, 32, 36, 37, 45, 47, 56, 58, 63, 70, 76, 77, 89, 104, 109, 119, 125, 132, 139, 149, 150, 151, 152, 164], "hand": [3, 5, 19, 20, 21, 22, 68, 88, 116, 118, 135, 136, 137, 142], "higher": [3, 6, 18, 19, 55, 94, 104, 105, 115, 130, 140, 142, 143, 144], "shorter": [3, 115, 164], "last": [3, 20, 29, 34, 36, 59, 61, 82, 88, 89, 101, 108, 118, 124, 135, 136, 137, 148, 158], "repeatedli": [3, 99, 105, 149], "finer": [3, 7, 19, 34, 55, 115, 119, 120, 142, 148, 149], "celledg": [3, 32, 49], "colorbar_shrink": [3, 32], "colorbar_label": 3, "colorbar_tick": 3, "colorbar_tick_label": 3, "colorbar_extend": [3, 136], "colorbar_kwarg": [3, 127], "stand": [4, 132], "conserv": [4, 5, 6, 17, 18, 19, 98, 104, 106, 128, 141, 167, 170], "law": [4, 17, 63, 151, 170], "packag": [4, 27, 30, 31, 38, 39, 55, 59, 60, 67, 77, 78, 81, 85, 86, 88, 94, 96, 98, 100, 101, 103, 105, 108, 110, 111, 118, 129, 130, 165, 168], "wa": [4, 5, 6, 14, 19, 21, 22, 27, 31, 32, 34, 35, 36, 37, 42, 49, 52, 54, 58, 59, 66, 68, 70, 71, 75, 82, 99, 103, 104, 106, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 139, 142, 144, 161, 162, 164], "initi": [4, 5, 7, 12, 13, 18, 19, 24, 27, 32, 36, 37, 47, 48, 49, 51, 52, 55, 59, 64, 67, 71, 72, 75, 77, 78, 84, 86, 87, 88, 89, 91, 92, 94, 95, 97, 98, 102, 103, 104, 106, 107, 109, 112, 115, 124, 127, 130, 132, 140, 143, 148, 149, 150, 152, 154, 158, 162, 164], "develop": [4, 6, 7, 12, 13, 19, 20, 24, 25, 45, 52, 56, 58, 61, 62, 65, 70, 71, 81, 85, 86, 89, 96, 101, 104, 105, 111, 113, 116, 118, 127, 128, 130, 132, 135, 136, 137, 140, 143, 144, 150], "linear": [4, 5, 17, 18, 19, 32, 36, 37, 47, 49, 55, 72, 75, 82, 88, 92, 104, 118, 128, 140, 141, 142], "nonlinear": [4, 5, 17, 52, 92, 140, 148, 170], "hyperbol": [4, 5, 6, 17, 18, 19, 45, 78, 89, 96, 101, 102, 108, 140, 148, 151, 167, 170], "system": [4, 16, 17, 18, 19, 25, 39, 40, 48, 55, 56, 62, 63, 67, 76, 77, 86, 96, 97, 98, 99, 101, 102, 105, 108, 111, 116, 118, 140, 148, 150, 152, 160, 167, 170], "focu": [4, 48], "high": [4, 17, 34, 52, 55, 70, 72, 75, 78, 89, 96, 104, 140, 143, 144, 166, 167], "resolut": [4, 6, 17, 32, 34, 36, 42, 47, 64, 72, 75, 94, 104, 108, 109, 119, 123, 127, 128, 135, 140, 143, 162, 164, 166, 167], "godunov": [4, 94, 104, 148, 150, 152, 167], "method": [4, 5, 7, 17, 19, 34, 36, 37, 41, 45, 47, 57, 70, 72, 82, 84, 88, 91, 92, 94, 99, 103, 104, 109, 115, 116, 123, 140, 147, 148, 149, 150, 152, 158, 161, 162, 164, 167], "framework": [4, 86, 89, 124, 125], "applic": [4, 6, 15, 16, 18, 19, 21, 22, 24, 25, 26, 30, 31, 36, 37, 38, 39, 40, 44, 45, 46, 47, 48, 50, 59, 61, 62, 67, 70, 76, 77, 84, 93, 94, 95, 96, 98, 104, 109, 112, 114, 115, 116, 118, 119, 122, 123, 125, 126, 127, 129, 130, 140, 142, 144, 145, 148, 151, 156, 157, 162, 164, 165, 167, 168], "finit": [4, 17, 34, 36, 45, 49, 57, 63, 70, 71, 72, 75, 104, 130, 142, 151, 161, 162, 167], "volum": [4, 17, 31, 34, 36, 45, 49, 57, 63, 70, 71, 72, 96, 130, 142, 149, 151, 161, 162, 167], "riemann": [4, 5, 8, 22, 24, 25, 30, 31, 48, 59, 62, 67, 78, 86, 88, 94, 95, 104, 105, 106, 108, 111, 146, 148, 150, 152, 156, 157, 170], "solver": [4, 5, 6, 22, 24, 25, 27, 30, 48, 49, 60, 61, 62, 67, 85, 86, 87, 91, 94, 95, 98, 106, 118, 121, 123, 125, 126, 127, 128, 129, 130, 132, 137, 148, 150, 152, 156, 157, 170], "resolv": [4, 34, 36, 55, 58, 62, 113, 127, 144], "jump": [4, 5, 71, 84, 94, 104, 125, 148, 170], "discontinu": [4, 104, 170], "interfac": [4, 21, 24, 71, 86, 89, 92, 96, 97, 102, 104, 109, 140, 167, 168, 170], "wave": [4, 5, 6, 16, 17, 18, 27, 34, 42, 48, 49, 52, 55, 56, 75, 92, 94, 96, 101, 102, 104, 115, 123, 125, 126, 132, 141, 142, 143, 148, 149, 150, 151, 152, 154, 167], "propag": [4, 5, 6, 17, 18, 19, 27, 32, 49, 52, 55, 56, 75, 94, 96, 104, 115, 125, 140], "neighbor": [4, 18, 19, 36, 42, 70, 72, 115, 125, 144, 149, 150, 164], "formul": [4, 5, 19, 52, 68, 140, 148], "allow": [4, 6, 13, 24, 29, 30, 31, 34, 36, 37, 41, 42, 47, 48, 51, 54, 55, 57, 58, 62, 68, 70, 71, 75, 76, 78, 81, 82, 91, 96, 97, 98, 104, 106, 109, 110, 111, 115, 116, 119, 120, 123, 124, 125, 126, 127, 129, 130, 132, 135, 136, 137, 140, 142, 148, 150, 151, 152, 153, 158, 162, 164, 166], "easi": [4, 6, 11, 31, 41, 62, 71, 89, 98, 99, 100, 142, 153, 167], "extens": [4, 17, 19, 24, 26, 30, 32, 52, 55, 58, 62, 67, 71, 89, 96, 97, 109, 125, 126, 132, 148, 160, 164, 170], "problem": [4, 5, 7, 16, 17, 18, 19, 22, 26, 27, 29, 30, 31, 38, 39, 42, 45, 48, 49, 62, 66, 70, 71, 72, 75, 78, 82, 85, 87, 88, 93, 95, 96, 99, 102, 104, 107, 111, 116, 119, 120, 122, 123, 126, 130, 132, 136, 137, 140, 142, 144, 148, 149, 150, 151, 152, 153, 154, 161, 165], "algorithm": [4, 7, 19, 27, 34, 41, 42, 48, 56, 88, 94, 96, 97, 104, 108, 115, 127, 140, 142, 148, 150, 152, 164], "brief": [4, 59, 141, 151], "subroutin": [4, 6, 9, 16, 24, 34, 36, 67, 115, 123, 140, 148, 149, 161, 167, 170], "equat": [4, 5, 16, 17, 18, 27, 38, 39, 48, 49, 52, 64, 68, 82, 87, 88, 89, 91, 96, 97, 98, 101, 104, 105, 106, 118, 120, 123, 125, 127, 128, 140, 148, 150, 151, 152, 154, 162, 167, 170], "solv": [4, 5, 8, 16, 17, 18, 19, 22, 28, 38, 39, 49, 52, 60, 62, 64, 87, 89, 91, 94, 96, 101, 102, 105, 118, 128, 140, 141, 148, 162, 167, 170], "adapt": [4, 7, 17, 19, 32, 42, 49, 56, 57, 70, 71, 78, 88, 115, 127, 130, 132, 140, 142, 147, 148, 149, 151, 167], "mesh": [4, 7, 17, 19, 35, 49, 56, 70, 71, 78, 81, 88, 115, 130, 147, 148, 167], "amrclaw": [4, 5, 6, 12, 15, 16, 19, 21, 22, 24, 25, 26, 30, 38, 39, 41, 42, 44, 46, 47, 48, 50, 56, 59, 60, 61, 62, 64, 70, 71, 76, 77, 78, 85, 96, 97, 105, 111, 112, 115, 116, 139, 140, 142, 145, 146, 148, 151, 156, 157, 160, 161, 165], "detail": [4, 5, 10, 16, 24, 25, 27, 28, 30, 31, 32, 34, 36, 38, 39, 41, 44, 47, 50, 52, 55, 58, 61, 62, 64, 65, 66, 70, 71, 75, 78, 82, 86, 91, 92, 93, 94, 96, 97, 98, 99, 100, 101, 102, 104, 114, 115, 116, 120, 125, 127, 132, 135, 140, 142, 147, 148, 151, 153, 158, 162, 165, 166, 167, 170], "content": [4, 6, 25, 37, 45, 55, 59, 77, 78, 89, 96, 151, 162, 167, 168], "routin": [4, 5, 6, 16, 18, 19, 22, 27, 29, 32, 34, 38, 39, 47, 48, 49, 50, 55, 56, 66, 71, 72, 76, 77, 78, 81, 84, 86, 89, 91, 94, 97, 100, 101, 104, 106, 107, 115, 118, 119, 120, 123, 125, 127, 128, 130, 140, 144, 148, 150, 152, 158, 164, 165, 167, 168, 170], "special": [4, 7, 16, 48, 50, 55, 65, 78, 86, 97, 115, 135, 142, 164], "depth": [4, 5, 16, 17, 18, 19, 24, 32, 34, 35, 37, 42, 47, 48, 49, 52, 68, 72, 75, 81, 83, 141, 143, 144, 151, 162], "averag": [4, 6, 15, 17, 18, 19, 34, 42, 48, 49, 52, 53, 57, 71, 72, 102, 106, 120, 132, 140, 144, 145, 162, 164, 167], "geophys": [4, 16, 17, 25, 48, 52, 78, 148], "flow": [4, 16, 17, 25, 34, 35, 48, 50, 52, 78, 96, 113, 118, 130, 135, 140, 148, 151, 162, 167], "geoclaw": [4, 7, 12, 17, 18, 19, 25, 26, 30, 31, 32, 34, 35, 36, 37, 39, 41, 44, 46, 47, 56, 57, 59, 60, 61, 62, 63, 64, 68, 70, 72, 75, 77, 78, 81, 85, 96, 105, 111, 113, 114, 116, 139, 140, 141, 143, 144, 146, 148, 149, 154, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167], "parallel": [4, 24, 25, 47, 76, 87, 93, 95, 96, 98, 101, 103, 105, 109, 115, 116, 118, 125, 149], "ten": [4, 78], "thousand": [4, 78], "core": [4, 12, 78, 116, 127, 137], "wish": [4, 13, 14, 15, 24, 31, 38, 39, 52, 55, 62, 71, 80, 81, 96, 101, 104, 105, 107, 111, 113, 115, 125, 145, 153, 156, 157, 165], "discrib": 4, "book": [4, 12, 17, 27, 31, 46, 85, 103, 140], "levequ": [4, 16, 17, 26, 32, 56, 78, 92, 94, 96, 104, 110, 140, 148, 167, 170], "fvmhp": [4, 12, 16, 17, 27, 46, 78, 140, 148, 167, 170], "virtual": [4, 13, 27, 29, 106], "were": [4, 6, 14, 19, 22, 34, 45, 47, 58, 64, 67, 71, 72, 89, 115, 118, 119, 125, 128, 132, 135, 136, 137, 142, 144, 154, 162], "4": [4, 7, 8, 9, 13, 16, 17, 20, 25, 27, 30, 32, 34, 35, 36, 39, 41, 42, 44, 45, 47, 48, 52, 55, 57, 58, 59, 66, 67, 68, 70, 71, 72, 76, 77, 81, 82, 84, 95, 96, 97, 98, 99, 101, 102, 104, 105, 109, 111, 115, 116, 118, 119, 124, 127, 132, 133, 135, 137, 139, 142, 148, 149, 150, 151, 152, 160, 161, 162, 164, 169], "3": [4, 6, 7, 15, 16, 19, 22, 24, 26, 27, 32, 34, 35, 36, 39, 41, 45, 47, 48, 55, 57, 59, 62, 63, 68, 71, 72, 75, 77, 82, 84, 85, 88, 91, 92, 94, 97, 98, 99, 102, 103, 104, 106, 110, 111, 115, 125, 127, 130, 136, 138, 140, 142, 145, 148, 149, 150, 151, 152, 160, 161, 162, 164, 167, 170], "pointer": [4, 16, 18, 19, 58, 75, 81, 84, 104, 109, 123], "code": [4, 5, 6, 7, 8, 12, 14, 16, 21, 22, 23, 24, 25, 26, 29, 31, 34, 35, 36, 37, 38, 39, 41, 43, 44, 45, 47, 48, 49, 52, 54, 56, 57, 58, 60, 65, 66, 67, 68, 74, 75, 76, 77, 78, 80, 82, 84, 85, 86, 88, 89, 94, 96, 97, 98, 99, 101, 104, 105, 108, 110, 111, 114, 117, 118, 119, 120, 123, 124, 125, 126, 127, 128, 129, 130, 132, 137, 139, 140, 141, 142, 146, 148, 149, 150, 151, 152, 153, 158, 160, 161, 162], "bibliographi": [4, 27], "paper": [4, 5, 6, 16, 19, 32, 48, 58, 92, 96], "distribut": [4, 12, 13, 31, 32, 58, 65, 75, 78, 86, 104, 110, 130], "under": [4, 7, 24, 34, 36, 40, 55, 56, 58, 61, 65, 67, 81, 86, 94, 96, 116, 125, 127, 138], "term": [4, 18, 19, 27, 48, 49, 52, 65, 75, 89, 94, 95, 104, 115, 118, 126, 127, 136, 137, 141, 148, 150, 151, 152, 156, 157], "berkelei": [4, 65, 86], "bsd": [4, 65, 86, 127], "contribut": [4, 26, 27, 61, 86, 89, 96, 101, 104, 113, 116], "its": [4, 6, 13, 18, 19, 24, 31, 34, 42, 52, 55, 65, 67, 70, 75, 77, 86, 91, 92, 93, 94, 96, 101, 103, 104, 106, 109, 115, 150, 164, 170], "incept": 4, "1994": [4, 65], "major": [4, 24, 59, 86, 89, 117, 119, 120, 121, 126, 128, 133, 136, 137], "design": [4, 29, 30, 55, 86, 88, 108, 142, 166], "made": [4, 19, 20, 24, 30, 32, 37, 62, 103, 106, 118, 119, 120, 125, 127, 130, 132, 135, 136, 137, 142, 144, 151, 159, 162, 164, 167], "individu": [4, 24, 25, 55, 63, 66, 67, 71, 94, 115, 116, 158], "randal": [4, 17, 96], "univers": [4, 17, 26, 58, 65, 86, 103], "washington": [4, 17, 26, 58, 65, 129, 142, 164], "rjlevequ": [4, 19, 30, 31], "marsha": [4, 6, 17], "berger": [4, 6, 17], "courant": [4, 6, 49, 115, 126, 148, 149, 150, 152], "institut": 4, "nyu": 4, "mjberger": 4, "jan": [4, 59], "olav": 4, "langseth": [4, 17], "norwegian": 4, "defenc": 4, "research": [4, 17, 48, 52, 86, 104, 114], "establish": 4, "david": [4, 17, 86, 96, 104], "georg": [4, 17, 32], "usg": [4, 32, 166], "cascad": 4, "volcano": 4, "observatori": 4, "dlgeorg": 4, "ketcheson": [4, 17, 79, 86, 96, 104], "kaust": [4, 26], "ketch": 4, "kyle": [4, 17, 86, 92, 96, 97, 102], "mandli": [4, 17, 86, 92, 96, 97, 102], "ut": 4, "austin": 4, "contributor": [4, 26, 65, 96], "aron": [4, 17, 86, 96], "ahmadia": [4, 17, 86, 96], "amal": [4, 17, 86, 96], "alghamdi": [4, 17, 86, 96], "ghamdi": 4, "ian": 4, "bollig": 4, "bolliger32": 4, "peter": 4, "blossei": 4, "donna": [4, 17], "calhoun": [4, 17, 55], "donnabois": 4, "ond\u0159ej": 4, "\u010dert\u00edk": 4, "certik": [4, 86], "brisa": 4, "davi": [4, 17], "brisadavi": [4, 128], "gradi": [4, 17, 86], "lemoin": [4, 17, 86], "gradylemoin": 4, "sorin": 4, "mitran": [4, 17], "matteo": [4, 17, 86, 96], "parsani": [4, 17, 86, 96], "mparsani": 4, "xinsheng": [4, 56], "qin": [4, 56], "xinshengqin": [4, 56], "avi": 4, "schwarzschild": 4, "aks2203": 4, "andi": 4, "terrel": 4, "aterrel": 4, "chri": 4, "vogl": 4, "cjvogl": 4, "numer": [4, 17, 55, 110, 128], "student": 4, "toward": [4, 32], "bug": [4, 8, 12, 24, 26, 44, 55, 68, 76, 82, 86, 118, 122, 123, 124, 125, 127, 132, 133, 134, 137], "suggest": [4, 18, 19, 26, 31, 51, 57, 58, 60, 62, 84, 85, 110, 138, 140, 151, 169], "improv": [4, 13, 24, 26, 34, 36, 55, 58, 97, 110, 118, 119, 120, 122, 123, 124, 125, 126, 128, 129, 130, 131, 132, 133, 148], "explor": [4, 36, 63, 82, 84], "thank": [4, 96], "pleas": [4, 26, 30, 58, 60, 61, 62, 86, 88, 91, 93, 96, 97, 99, 101, 103, 104, 105, 107, 113, 127, 132, 138, 140, 158], "itself": [4, 75, 81, 110, 130, 140, 151, 164], "well": [4, 6, 19, 30, 35, 48, 49, 55, 56, 58, 62, 63, 70, 75, 76, 77, 78, 81, 84, 85, 103, 104, 113, 126, 127, 130, 135, 141, 144, 148, 149, 156, 157, 158, 167, 170], "citat": [4, 19, 59], "similar": [4, 13, 16, 18, 30, 34, 36, 39, 47, 49, 55, 64, 88, 89, 97, 101, 104, 108, 127, 132, 151, 158, 159, 160, 162], "team": [4, 26, 65], "2020": [4, 26, 27, 58, 65, 110, 113, 130, 131, 132, 138, 140], "7": [4, 6, 14, 31, 34, 36, 41, 42, 47, 51, 58, 64, 68, 70, 77, 82, 85, 94, 105, 111, 115, 132, 138, 142, 143, 144, 149, 150], "http": [4, 12, 13, 17, 19, 26, 28, 30, 31, 32, 42, 51, 55, 56, 58, 59, 61, 62, 65, 70, 75, 85, 86, 89, 90, 97, 99, 101, 110, 111, 118, 122, 124, 125, 126, 128, 129, 132, 133, 134, 135, 136, 137, 138, 141, 158, 164], "www": [4, 13, 17, 32, 42, 48, 58, 65, 70, 86, 89, 94, 97, 99, 118, 126, 128, 135, 136, 158, 164], "org": [4, 17, 19, 48, 56, 58, 59, 65, 86, 89, 90, 94, 97, 99, 110, 111, 118, 124, 126, 128, 132, 133, 134, 135, 136, 137, 164], "doi": [4, 17, 56, 59, 61, 118, 130, 131, 132, 133, 134, 135, 136, 137, 138], "10": [4, 17, 18, 19, 30, 32, 34, 36, 42, 49, 55, 56, 57, 59, 82, 88, 91, 94, 115, 124, 125, 127, 130, 131, 132, 133, 134, 135, 136, 137, 138, 142, 148, 149, 150, 152, 154, 162], "5281": [4, 59, 118, 130, 131, 132, 133, 134, 135, 136, 137, 138], "zenodo": [4, 61, 118, 130, 131, 132, 133, 134, 135, 136, 137, 138], "4025432": [4, 131, 138], "here": [4, 13, 16, 18, 19, 31, 36, 41, 42, 52, 59, 62, 63, 70, 78, 82, 84, 88, 91, 96, 97, 99, 101, 102, 107, 108, 111, 113, 115, 123, 140, 141, 142, 159, 164, 170], "bibtex": [4, 59], "misc": [4, 129, 131], "url": [4, 12, 17, 55, 59, 127, 128, 162, 164], "year": [4, 17, 24, 55, 63, 96, 117, 128, 158], "releas": [4, 19, 20, 24, 27, 30, 31, 46, 49, 55, 60, 61, 62, 90, 96, 97, 104, 105, 110], "refer": [4, 5, 19, 22, 32, 34, 35, 36, 38, 39, 41, 48, 50, 55, 59, 66, 67, 71, 75, 88, 92, 94, 97, 98, 102, 104, 106, 111, 113, 127, 129, 139, 140, 142, 151, 158, 162, 164, 166, 167], "particular": [4, 6, 12, 22, 24, 30, 32, 34, 44, 47, 48, 50, 52, 55, 56, 59, 65, 66, 67, 71, 78, 82, 83, 85, 86, 88, 102, 103, 104, 106, 108, 113, 114, 115, 116, 118, 120, 123, 124, 125, 126, 127, 129, 130, 132, 147, 158, 159, 170], "obtain": [4, 6, 12, 34, 46, 47, 49, 50, 52, 62, 63, 72, 97, 98, 99, 115, 118, 132, 140, 144, 153, 162, 170], "your": [4, 6, 15, 16, 18, 19, 21, 22, 26, 27, 28, 36, 38, 40, 44, 47, 57, 58, 59, 60, 61, 62, 76, 81, 82, 84, 86, 87, 88, 89, 90, 93, 95, 96, 97, 98, 107, 108, 110, 111, 112, 113, 115, 116, 119, 127, 137, 140, 145, 146, 156, 157, 162, 165, 167], "multipl": [4, 5, 6, 13, 25, 30, 34, 35, 42, 47, 81, 88, 94, 97, 98, 109, 111, 116, 119, 125, 129, 139, 140, 149, 158, 159], "past": [4, 23, 27, 58, 64, 70, 103, 125, 128, 132, 138, 142, 143, 151], "17605": [4, 59, 138], "osf": [4, 138], "io": [4, 58, 59, 85, 98, 103, 138], "kmw6h": [4, 59, 138], "recent": [4, 13, 24, 29, 32, 49, 54, 58, 61, 66, 68, 76, 82, 84, 85, 118, 124, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 140, 154, 166], "articl": [4, 17, 96, 153], "l": [4, 7, 17, 34, 43, 61, 115, 140, 146, 150], "hadjimichael": [4, 17, 86], "2016": [4, 17, 26, 58], "build": [4, 17, 30, 31, 58, 59, 62, 71, 89, 99, 109, 126, 137, 142], "open": [4, 13, 17, 27, 30, 31, 32, 51, 55, 63, 81, 86, 90, 94, 97, 109, 142, 146, 166, 168], "ecosystem": [4, 17], "pde": [4, 5, 17, 60, 61, 62, 78, 85, 96, 108, 148, 167], "peerj": [4, 17], "scienc": [4, 17, 86], "7717": [4, 17], "c": [4, 16, 17, 30, 31, 32, 44, 55, 63, 65, 82, 86, 88, 89, 94, 102, 107, 108, 140], "68": [4, 17], "mandli2016clawpack": [4, 17], "yianni": [4, 17, 86], "journal": [4, 17, 56, 96, 153], "e68": [4, 17], "publish": [4, 17, 58, 96], "inc": [4, 17, 71], "least": [4, 5, 6, 13, 37, 47, 55, 63, 64, 70, 71, 107, 115, 116, 124, 125, 132, 148, 150, 154, 162, 164], "regard": [4, 41, 124, 158], "click": [4, 12, 13, 20, 30, 55, 58, 59, 116, 118, 126, 135, 136, 137, 138], "link": [4, 11, 13, 15, 17, 20, 21, 22, 26, 27, 30, 34, 36, 44, 45, 48, 55, 56, 57, 58, 59, 61, 63, 110, 111, 112, 118, 126, 135, 136, 137, 138, 140, 141, 143, 145, 152, 156, 157, 162, 166], "classic": [4, 6, 12, 15, 16, 21, 22, 24, 25, 26, 30, 44, 45, 46, 50, 59, 60, 61, 62, 67, 74, 76, 77, 78, 85, 86, 88, 91, 93, 94, 95, 96, 97, 101, 111, 112, 116, 139, 140, 145, 146, 149, 151, 157, 165, 167], "2d": [4, 7, 8, 15, 16, 18, 21, 24, 27, 29, 32, 34, 36, 37, 41, 42, 48, 49, 51, 56, 63, 71, 76, 81, 86, 88, 94, 96, 100, 104, 110, 112, 115, 118, 123, 125, 126, 127, 128, 129, 132, 136, 141, 142, 144, 145, 148, 149, 152, 154, 156, 157, 164, 168, 170], "leveque97": [4, 17], "3d": [4, 7, 15, 19, 24, 32, 71, 76, 81, 86, 96, 100, 104, 112, 115, 118, 119, 121, 123, 124, 125, 128, 136, 140, 142, 145, 148, 149, 156, 157, 168, 170], "langsethleveque00": [4, 17], "amr": [4, 7, 8, 16, 18, 19, 22, 25, 27, 29, 30, 34, 36, 37, 41, 47, 48, 49, 56, 63, 71, 72, 73, 77, 78, 81, 86, 94, 118, 124, 126, 127, 128, 130, 132, 135, 144, 147, 148, 150, 152, 161, 167], "bergerleveque98": [4, 6, 7, 17], "f": [4, 5, 6, 16, 17, 18, 22, 24, 27, 29, 30, 33, 66, 67, 89, 91, 97, 98, 101, 102, 104, 106, 107, 109, 119, 123, 126, 127, 128, 132, 141, 148, 149, 150, 152, 164, 165, 167], "balelevmitross02": [4, 17, 148, 170], "bergergeorgelevequemandli11": [4, 17], "levequegeorgeberg": [4, 17], "order": [4, 5, 6, 13, 16, 17, 18, 19, 31, 32, 34, 36, 47, 52, 57, 62, 64, 67, 70, 71, 72, 75, 77, 78, 82, 84, 85, 86, 88, 91, 92, 94, 96, 97, 98, 100, 101, 104, 108, 109, 110, 111, 115, 118, 123, 127, 132, 136, 140, 142, 144, 147, 148, 149, 150, 152, 158, 162, 164, 165, 167, 170], "sharpclaw": [4, 25, 27, 78, 86, 93, 95, 96, 101, 119, 140], "ketparlev13": [4, 17, 78, 96, 140], "ketchesonmandliet": [4, 17], "support": [4, 8, 13, 18, 19, 24, 36, 37, 41, 44, 49, 52, 55, 60, 61, 73, 75, 77, 85, 86, 88, 89, 94, 97, 98, 100, 102, 104, 115, 118, 123, 125, 126, 127, 128, 132, 133, 135, 136, 140, 142, 148, 149, 151, 158, 159, 162, 165, 168], 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134, 135, 136, 140, 142, 148, 152, 158, 161, 162, 167, 168], "aux": [5, 6, 15, 22, 24, 29, 47, 57, 89, 96, 97, 98, 101, 103, 104, 106, 107, 119, 120, 125, 127, 140, 141, 145, 148, 149, 150, 151, 152, 167], "inner": [5, 115, 128], "product": [5, 32, 65, 86, 109, 115, 128], "amrdata": [5, 24, 34, 115, 130, 132, 149, 150, 151], "aux_typ": [5, 149, 150], "append": [5, 22, 34, 36, 41, 42, 47, 55, 64, 82, 91, 103, 115, 124, 125, 137, 139, 140, 150, 151], "num_aux": [5, 89, 97, 99, 101, 102, 106, 140, 148, 149, 150, 152, 167], "len": [5, 32, 37, 94, 150, 152, 164], "innerprod_index": 5, "base": [5, 6, 13, 19, 22, 23, 24, 30, 31, 32, 34, 35, 36, 48, 49, 51, 55, 56, 57, 58, 63, 64, 67, 68, 70, 71, 75, 78, 89, 91, 92, 94, 96, 97, 102, 103, 104, 106, 108, 109, 115, 117, 123, 126, 128, 132, 135, 136, 143, 148, 149, 150, 151, 152, 158, 164, 167, 170], "richardson": [5, 7, 24, 149, 150], "error": [5, 16, 22, 38, 39, 43, 55, 62, 71, 76, 82, 91, 96, 97, 98, 109, 115, 116, 128, 132, 137, 149, 150, 158, 165], "estimat": [5, 150], "flag_richardson": [5, 115, 124, 149, 150], "flag_richardson_tol": [5, 115, 149, 150], "1e": [5, 70, 152], "flag2refin": [5, 7, 24, 149, 150], "flag2refine_tol": [5, 115, 149, 150], "01": [5, 17, 42, 77, 94, 164], "we": [5, 6, 18, 19, 24, 26, 28, 34, 38, 39, 41, 42, 47, 52, 55, 57, 58, 59, 60, 62, 67, 70, 72, 75, 81, 84, 88, 89, 90, 91, 93, 94, 97, 98, 99, 100, 101, 104, 105, 106, 107, 108, 109, 110, 113, 116, 127, 130, 135, 137, 140, 141, 142, 164], "attempt": [5, 8, 11, 22, 35, 38, 39, 66, 97, 103, 109, 116, 119, 133, 158, 164, 165], "estim": [5, 68, 115, 149, 151], "step": [5, 6, 10, 16, 18, 19, 21, 30, 34, 36, 38, 39, 40, 47, 55, 58, 59, 64, 71, 77, 78, 81, 84, 86, 87, 88, 89, 91, 98, 101, 104, 106, 108, 113, 115, 118, 119, 124, 125, 135, 139, 140, 146, 148, 149, 150, 151, 152, 162, 170], "extrapol": [5, 7, 16, 24, 72, 101, 108, 127, 148, 149, 150, 152], "togeth": [5, 16, 30, 31, 32, 58, 60, 75, 115, 135], "experiment": [5, 86], "simpli": [5, 13, 19, 36, 38, 39, 40, 42, 47, 49, 55, 57, 66, 67, 70, 72, 88, 90, 91, 93, 98, 99, 105, 116, 118, 140, 142, 153, 158, 164, 167, 168], "magnitud": [5, 32, 115, 127, 151], "greater": [5, 34, 63, 68, 70, 105, 115, 139, 148, 149, 151], "model": [5, 12, 16, 17, 18, 19, 26, 27, 32, 34, 44, 48, 49, 50, 56, 57, 68, 98, 115, 124, 129, 130, 131, 142, 143, 144, 151, 154, 158, 159, 162], "davisleveque2016": [5, 17], "chile2010_adjoint": 5, "shallow": [5, 15, 16, 17, 18, 19, 27, 34, 36, 42, 48, 49, 52, 56, 70, 78, 89, 96, 112, 118, 120, 121, 123, 125, 127, 128, 136, 137, 140, 144, 145, 151, 156, 157, 162, 167], "water": [5, 16, 17, 18, 19, 27, 36, 42, 47, 48, 49, 50, 51, 52, 63, 70, 78, 81, 89, 96, 118, 120, 121, 125, 127, 128, 137, 140, 142, 143, 144, 151, 162, 164, 166, 167], "while": [5, 13, 16, 19, 32, 42, 55, 71, 75, 82, 84, 89, 94, 98, 99, 104, 109, 127, 140, 144, 151, 166], "suitabl": [5, 8, 16, 18, 19, 22, 48, 52, 55, 73, 77, 103, 114, 140, 143, 158, 164], "To": [5, 6, 13, 14, 18, 19, 20, 24, 27, 30, 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113, 127, 143, 156, 157, 162, 164], "henc": [5, 36, 57, 58, 67, 72, 104, 110, 111, 115, 144], "take": [5, 6, 24, 29, 30, 32, 34, 37, 51, 58, 68, 70, 71, 75, 82, 88, 94, 101, 104, 108, 109, 110, 115, 116, 118, 122, 128, 136, 144, 148, 149, 150, 151, 164, 167, 170], "rpn2_geoclaw_adjoint_qwav": 5, "rpt2_geoclaw_adjoint_qwav": 5, "non": [5, 16, 59, 70, 78, 89, 101, 108, 128, 130, 148, 150, 152, 158, 170], "vector": [5, 24, 88, 92, 98, 106, 127, 135, 140, 141], "split": [5, 6, 76, 94, 97, 104, 123, 124, 132, 148, 149, 150, 152, 161, 167, 170], "flux": [5, 17, 34, 36, 37, 94, 102, 104, 140, 148, 170], "comment": [5, 11, 19, 26, 53, 59, 126, 135, 139], "rpn2": [5, 140], "basic": [6, 10, 12, 27, 32, 38, 40, 48, 61, 70, 71, 88, 94, 96, 97, 98, 102, 104, 116, 140, 141, 158, 170], "strategi": 6, "logic": [6, 16, 17, 34, 132, 151], "rectangular": [6, 7, 16, 17, 32, 34, 37, 41, 42, 48, 50, 63, 70, 94, 115, 127, 130, 135, 149, 151, 162], "too": [6, 19, 51, 55, 58, 59, 118, 124, 142, 150, 152, 154], "portion": [6, 36, 42, 55, 70, 89, 135, 161], "factor": [6, 55, 149, 151, 161, 164], "direct": [6, 8, 16, 24, 32, 34, 36, 38, 39, 47, 49, 51, 55, 59, 63, 65, 66, 71, 75, 76, 82, 86, 91, 101, 108, 115, 126, 140, 148, 149, 151, 164], "anisotrop": [6, 24], "perhap": [6, 12, 19, 34, 42, 47, 58, 82, 106, 109, 115, 142], "section": [6, 13, 16, 36, 38, 39, 42, 44, 49, 50, 52, 58, 59, 67, 71, 81, 84, 96, 116, 132, 139, 148, 151, 164], "cfl": [6, 49, 94, 98, 104, 108, 118, 119, 124, 148, 150, 151, 152], "spatial": [6, 17, 27, 32, 36, 37, 41, 42, 47, 48, 49, 64, 68, 72, 101, 115, 119, 123, 130, 132, 140, 143, 149, 150, 151, 152, 170], "reduc": [6, 16, 36, 42, 49, 55, 118, 124, 126, 135, 170], "thu": [6, 51, 98, 101, 127, 158], "proce": [6, 18, 19, 30, 151], "advanc": [6, 17, 36, 56, 70, 76, 108, 124, 136, 148, 149, 167], "taken": [6, 34, 70, 75, 98, 104, 115, 148, 167], "around": [6, 32, 34, 42, 63, 97, 113, 116, 130, 149, 150, 158, 164, 167], "librari": [6, 13, 15, 16, 18, 19, 22, 24, 27, 29, 30, 34, 36, 38, 39, 44, 47, 49, 56, 63, 66, 76, 77, 78, 86, 92, 97, 99, 104, 109, 111, 112, 115, 125, 130, 144, 145, 149, 156, 157, 165, 167], "bcnamr": [6, 16, 127, 148, 150, 167], "check": [6, 14, 15, 16, 22, 34, 38, 39, 43, 44, 54, 55, 56, 58, 59, 60, 62, 66, 71, 82, 85, 88, 89, 91, 96, 99, 103, 104, 106, 108, 109, 111, 112, 115, 120, 129, 142, 144, 145, 149, 150, 156, 157, 158, 164, 165, 166, 167], "denot": [6, 19, 24, 37, 47, 57, 140, 164], "procedur": [6, 16, 42, 48, 49, 59, 167], "updat": [6, 12, 13, 24, 25, 27, 34, 53, 56, 61, 62, 64, 84, 96, 104, 106, 107, 110, 113, 118, 119, 123, 125, 126, 127, 128, 129, 130, 140, 149, 150, 152, 155, 158, 161, 167], "consist": [6, 27, 34, 36, 51, 55, 59, 63, 99, 110, 125, 135, 136, 140, 142, 151, 162, 167], "replac": [6, 13, 31, 36, 41, 47, 52, 56, 58, 59, 61, 64, 66, 81, 89, 93, 97, 99, 100, 101, 102, 106, 109, 116, 118, 119, 125, 127, 129, 130, 135, 139, 140, 144, 164, 165], "ly": [6, 70], "within": [6, 16, 30, 36, 37, 58, 62, 70, 72, 78, 82, 100, 109, 111, 115, 140, 142, 147, 153, 164], "approxim": [6, 16, 18, 19, 27, 35, 52, 55, 72, 75, 140], "lead": [6, 13, 24, 34, 36, 52, 55, 68, 71, 75, 111, 114, 132, 144, 149], "total": [6, 32, 36, 55, 75, 77, 98, 104, 148, 149, 150, 152, 161], "mass": [6, 98, 118, 154], "restor": 6, "global": [6, 14, 94, 106, 109, 118, 143, 162, 166, 167], "fix": [6, 21, 22, 24, 27, 35, 37, 41, 47, 48, 49, 58, 59, 63, 64, 66, 70, 72, 86, 97, 102, 118, 119, 120, 121, 122, 123, 124, 125, 126, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 141, 148, 150, 152, 164], "up": [6, 13, 19, 24, 30, 31, 32, 34, 36, 38, 39, 42, 43, 47, 48, 55, 58, 59, 63, 66, 70, 71, 75, 77, 82, 88, 89, 91, 93, 95, 96, 97, 99, 104, 105, 108, 111, 113, 115, 116, 118, 123, 124, 127, 130, 132, 137, 142, 144, 147, 150, 152, 161, 162, 165, 166], "style": [6, 24, 30, 32, 36, 41, 53, 55, 70, 73, 82, 86, 91, 127, 151], "olig": [6, 17], "colella": [6, 17], "bergeroliger84": [6, 17], "bergercolella89": [6, 17], "fortran": [6, 9, 11, 13, 14, 19, 22, 25, 29, 30, 32, 34, 35, 36, 37, 38, 47, 48, 50, 57, 60, 62, 66, 67, 68, 72, 76, 77, 78, 81, 84, 86, 88, 89, 91, 94, 96, 97, 99, 101, 102, 104, 105, 106, 109, 111, 118, 123, 124, 125, 127, 128, 129, 135, 136, 140, 141, 146, 149, 150, 151, 152, 158, 160, 161, 162], "written": [6, 11, 27, 32, 34, 36, 37, 43, 47, 62, 63, 64, 65, 75, 77, 78, 82, 86, 95, 96, 97, 101, 125, 140, 148, 149, 150, 151, 152, 158, 164, 167], "ga": [6, 102], "dynam": [6, 22, 32, 36, 52, 75, 78, 149], "merg": [6, 13, 27, 30, 56, 58, 59, 62, 123], "earli": [6, 22, 144], "mjb": [6, 17], "rjl": [6, 17, 111, 129], "fulli": [6, 52, 55, 56, 126, 130, 140, 151, 158, 159], "consid": [6, 42, 52, 62, 70, 89, 111, 146, 153, 164], "adjac": [6, 16, 34, 48, 115, 144, 148], "equival": [6, 47, 56, 57, 63, 64, 77, 129, 135, 162], "copi": [6, 14, 15, 16, 19, 38, 39, 47, 55, 58, 59, 62, 71, 88, 91, 101, 106, 112, 113, 114, 115, 120, 124, 127, 131, 144, 145, 149, 153, 156, 157, 162, 167], "interior": [6, 16, 42, 77, 106], "howev": [6, 13, 16, 18, 19, 24, 34, 38, 39, 42, 44, 49, 50, 52, 55, 62, 65, 67, 70, 72, 75, 76, 77, 86, 89, 96, 115, 116, 125, 127, 129, 143, 144, 147, 151, 161], "lie": [6, 34, 35, 37, 70, 72, 115, 130, 142], "outsid": [6, 16, 41, 63, 70, 130, 142, 144, 162, 164], "li": [6, 16, 34, 37, 72, 115, 142], "along": [6, 14, 16, 19, 26, 29, 32, 34, 42, 47, 55, 58, 61, 75, 77, 111, 115, 118, 123, 138, 139, 142, 144, 151, 166], "unless": [6, 34, 43, 44, 63, 102, 110, 143, 148, 149, 164], "standard": [6, 16, 19, 32, 34, 36, 49, 55, 57, 71, 77, 89, 92, 104, 111, 115, 116, 150, 151, 152, 153, 162, 167, 170], "beyond": [6, 32, 110, 127], "modifi": [6, 9, 14, 15, 16, 18, 19, 22, 24, 29, 34, 38, 39, 42, 47, 48, 58, 59, 62, 64, 66, 71, 74, 82, 89, 92, 94, 96, 101, 111, 112, 113, 114, 115, 122, 124, 125, 126, 127, 132, 142, 144, 145, 148, 150, 151, 152, 156, 157, 162, 164, 167], "damag": [6, 65, 86], "bcn": [6, 16, 152, 167], "nd": [6, 16, 115, 127, 130, 167], "actual": [6, 29, 32, 36, 57, 62, 63, 71, 75, 82, 92, 97, 109, 113, 143, 151], "softwar": [6, 13, 26, 27, 31, 48, 52, 65, 86, 96, 97, 98, 153, 162], "With": [6, 24, 30, 47, 51, 53, 55, 62, 70, 78, 115, 124, 140, 142, 148], "opposit": [6, 16, 97], "side": [6, 16, 19, 20, 34, 55, 58, 68, 75, 97, 116, 118, 135, 136, 137, 140, 170], "everi": [6, 12, 30, 34, 36, 47, 64, 66, 67, 77, 88, 91, 93, 97, 98, 106, 115, 116, 118, 125, 126, 140, 144, 146, 148, 150, 152, 158, 162, 164, 167], "few": [6, 12, 13, 19, 24, 28, 30, 31, 39, 49, 52, 58, 70, 71, 89, 104, 108, 110, 115, 116, 130, 143, 160, 162, 167], "coarsest": [6, 19, 36, 55, 77, 119, 139, 148], "revis": [6, 125], "shock": [6, 17, 52, 104, 115], "accord": [6, 57, 97], "criteria": [6, 7, 24, 27, 34, 70, 106], "cluster": [6, 17, 115, 149, 150], "rigoutsi": 6, "bergerrigoutsis91": [6, 17], "nonoverlap": 6, "rectangl": [6, 7, 27, 32, 36, 70, 75, 115, 130, 164], "balanc": [6, 17, 78, 126, 141, 156, 157], "conflict": [6, 30, 62, 66, 71, 107, 111], "goal": 6, "possibl": [6, 13, 24, 28, 30, 32, 34, 36, 37, 47, 49, 51, 52, 55, 64, 65, 66, 75, 82, 86, 94, 97, 99, 100, 104, 109, 111, 115, 140, 142, 143, 148, 149, 162, 166, 167], "minim": [6, 62, 70, 97, 142, 149, 164], "overhead": [6, 76, 115, 161], "cutoff": [6, 150], "control": [6, 7, 25, 27, 34, 36, 44, 47, 58, 62, 64, 71, 77, 84, 87, 92, 94, 96, 97, 98, 99, 101, 115, 125, 130, 141, 151], "fraction": [6, 13, 32, 115, 148, 167, 170], "70": [6, 36, 55], "realli": [6, 72, 116, 167], "At": [6, 13, 29, 30, 36, 38, 39, 42, 70, 99, 104, 108, 110, 115, 130, 148], "present": [6, 26, 63, 72, 94, 97, 102, 103, 104, 109, 153, 154, 167, 170], "previous": [6, 24, 34, 70, 77, 84, 118, 123, 130, 144], "bilinear": [6, 34, 42, 47, 57, 72, 119, 120, 162], "doxygen": [6, 7, 27, 126], "flowchart": [6, 7, 27], "capabl": [7, 12, 19, 24, 34, 36, 47, 52, 56, 64, 70, 78, 89, 96, 119, 124, 125, 127, 128, 129, 130, 131, 135, 136, 164, 166], "block": [7, 32, 35, 42, 63, 75, 77, 78, 88, 97, 106, 109, 116, 167], "structur": [7, 10, 24, 34, 36, 37, 41, 59, 62, 66, 78, 103, 104, 125, 142, 147, 164], "input": [7, 14, 16, 22, 25, 27, 29, 32, 35, 37, 43, 48, 55, 63, 67, 70, 71, 77, 88, 91, 92, 94, 96, 102, 103, 104, 109, 113, 124, 127, 128, 129, 140, 150, 151, 152, 158, 159, 162, 164, 167], "indic": [7, 16, 19, 22, 24, 27, 31, 32, 34, 36, 41, 42, 44, 47, 48, 55, 57, 59, 62, 67, 71, 72, 80, 84, 94, 98, 99, 102, 104, 108, 111, 115, 116, 125, 130, 132, 140, 141, 148, 149, 150, 151, 152, 154, 162, 164, 167], "tool": [7, 8, 17, 24, 25, 30, 32, 34, 35, 36, 37, 38, 39, 42, 48, 49, 50, 51, 52, 55, 57, 60, 61, 62, 63, 71, 75, 80, 81, 82, 83, 85, 96, 111, 114, 120, 121, 125, 126, 130, 131, 151, 153, 162, 164, 166, 168], "matlab": [7, 24, 27, 38, 39, 80, 81, 82, 100, 110, 118, 127, 130, 131], "deprec": [7, 32, 48, 58, 62, 118, 123, 127, 135, 137, 162, 164], "debug": [7, 18, 44, 66, 77, 81, 98, 106, 111, 116, 135, 148, 150], "flag": [7, 12, 13, 18, 24, 27, 30, 31, 41, 43, 44, 48, 56, 62, 76, 89, 107, 109, 111, 118, 123, 128, 132, 150, 151], "sampl": [7, 8, 14, 17, 18, 27, 31, 36, 44, 47, 48, 51, 55, 64, 75, 111, 116, 135, 139, 142, 148, 149, 162, 164, 167], "ghost": [7, 16, 19, 76, 77, 94, 97, 104, 106, 125, 132, 136, 148, 150, 152, 161, 167, 170], "flagregion": [7, 27, 70, 115, 130, 132, 142, 149, 151], "rule": [7, 13, 27, 63, 70, 89], "convex": [7, 34], "slu": 7, "bounding_box": [7, 35], "mask_outsid": [7, 70], "write": [7, 30, 32, 35, 36, 37, 41, 42, 47, 48, 54, 57, 58, 68, 75, 77, 78, 81, 88, 91, 94, 95, 97, 98, 99, 103, 118, 125, 127, 150, 152, 158, 162, 164], "instanti": [7, 91, 99, 101, 104, 106, 136, 150, 152], "make_kml": 7, "simpl": [7, 31, 38, 39, 41, 48, 59, 72, 75, 89, 96, 101, 102, 104, 109, 114, 116, 164], "select": [7, 12, 13, 15, 16, 30, 34, 42, 70, 97, 98, 104, 112, 115, 119, 126, 130, 138, 145, 148, 151, 156, 157, 166], "continent": [7, 70], "shelf": [7, 70], "guid": [7, 13, 17, 20, 25, 26, 27, 48, 50, 56, 61, 96, 110, 115, 118, 126, 130, 135, 136, 137, 155], "adjoint": [7, 17, 27, 56, 115, 127, 128], "gaug": [7, 27, 34, 36, 48, 49, 63, 72, 94, 95, 106, 113, 119, 123, 124, 125, 126, 127, 130, 135, 139, 143, 147, 150], "extend": [8, 16, 24, 42, 63, 70, 71, 94, 127, 142, 144, 151, 162, 164, 170], "directli": [8, 18, 19, 21, 25, 34, 48, 52, 61, 71, 75, 82, 84, 88, 89, 92, 96, 106, 109, 111, 127, 135, 164, 168], "obviou": [8, 55], "elimin": [8, 24, 70, 89, 111, 127, 151], "gallery_classic_amrclaw": 8, "num_cel": [8, 24, 49, 94, 140, 148, 149, 150, 152], "refinement_ratios_i": [8, 149, 150], "sweep": [8, 140], "transvers": [8, 94, 125, 132, 140, 141, 148, 167, 170], "graph": 9, "understand": [9, 27, 38, 39, 52, 81, 96, 108, 115, 140], "filpatch": [9, 42, 125, 129, 132], "idea": [10, 26, 32, 70, 71, 78, 88, 108, 120, 164, 170], "overal": [10, 88], "who": [10, 12, 21, 24, 26, 34, 44, 52, 60, 118], "gori": 10, "monster": 10, "column": [10, 32, 34, 47, 49, 52, 64, 98, 102, 123, 142, 164], "markup": 11, "languag": [11, 81, 109], "restructur": [11, 58], "text": [11, 58, 59, 63, 77, 91, 97, 104, 123], "sphinx": [11, 25, 27, 59, 126], "covert": 11, "convert_readm": 11, "brows": [11, 26, 45, 55, 71, 153, 167], "insert": [11, 16, 75, 97, 118, 146], "script": [11, 21, 22, 30, 32, 34, 36, 43, 47, 55, 58, 66, 71, 78, 81, 86, 89, 93, 95, 96, 98, 99, 104, 109, 111, 116, 127, 131, 140, 147, 151, 152, 164], "invok": [11, 14, 19, 76, 144, 165], "minor": [11, 19, 55, 58, 98, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 130, 132, 134, 136, 137], "syntax": [11, 61, 146], "highlight": [11, 13], "header": [11, 32, 34, 36, 42, 47, 57, 70, 75, 77, 97, 103, 123, 125, 127, 158, 162, 164], "complex": [12, 19, 36, 41, 94], "archiv": [12, 23, 39, 55, 59, 116, 153, 160, 164, 166], "github": [12, 15, 19, 24, 25, 26, 27, 28, 31, 56, 58, 61, 62, 93, 101, 105, 112, 116, 118, 122, 124, 125, 126, 135, 138, 140, 141, 145, 156, 157, 165], "app": [12, 13, 20, 25, 28, 30, 31, 40, 45, 46, 75, 113, 114, 118, 122, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 141], "com": [12, 13, 19, 25, 26, 28, 30, 31, 51, 56, 58, 59, 61, 62, 97, 99, 101, 105, 122, 124, 125, 126, 135, 138, 141], "fvmbook": [12, 17, 45, 46], "galleri": [12, 17, 27, 34, 36, 38, 39, 40, 45, 48, 49, 59, 80, 81, 93, 96, 110, 116, 122, 126, 153, 160, 167], "anim": [12, 16, 36, 45, 49, 55, 123, 130, 131, 135, 153], "instal": [12, 13, 19, 20, 25, 27, 31, 38, 46, 55, 58, 59, 84, 86, 87, 90, 95, 97, 108, 110, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 146, 169], "collect": [12, 27, 28, 30, 32, 34, 75, 81, 88, 104, 153], "either": [12, 16, 19, 22, 32, 34, 36, 42, 48, 50, 55, 64, 66, 70, 71, 75, 77, 82, 84, 88, 94, 96, 97, 98, 104, 109, 111, 115, 116, 123, 124, 125, 127, 135, 140, 142, 144, 149, 151, 158, 162, 164, 167, 170], "clone": [12, 20, 25, 26, 45, 56, 58, 59, 62, 85, 99, 105, 114, 118, 135, 136, 137, 165], "git": [12, 13, 25, 26, 27, 28, 56, 59, 62, 96, 105, 116, 129], "navig": [12, 31, 58, 153], "green": [12, 18, 19, 63, 70, 75, 82, 116, 164], "button": [12, 13, 30, 55, 63, 126], "download": [12, 13, 30, 31, 32, 39, 40, 42, 48, 55, 59, 61, 62, 93, 99, 105, 127, 128, 138, 160, 164, 165, 166], "zip": [12, 55, 59], "illustr": [12, 27, 32, 34, 38, 46, 48, 49, 55, 70, 71, 75, 77, 114, 122, 123, 127, 129, 140, 142, 153, 154, 164], "variou": [12, 19, 22, 24, 32, 36, 41, 46, 52, 58, 71, 72, 75, 82, 84, 94, 108, 110, 111, 115, 125, 140, 147, 151, 154, 158], "visibl": [12, 13, 46, 55, 114, 153], "render": [12, 24, 34, 46, 55, 63, 168], "advantag": [12, 19, 36, 47, 64, 81, 97, 110, 116, 142], "independ": [12, 25, 32, 36, 37], "contact": [12, 93, 96, 105], "u": [12, 13, 16, 26, 31, 34, 36, 37, 51, 52, 59, 60, 62, 64, 86, 93, 96, 102, 105, 106, 107, 108, 113, 126, 140, 149, 152, 158, 166], "storm": [12, 17, 26, 27, 48, 123, 126, 127, 128, 129, 131, 132, 133], "surg": [12, 17, 26, 27, 48, 123, 126, 127, 128, 129, 132, 158], "empti": [12, 36, 47, 103, 106, 109, 111, 118, 148, 151, 158, 164], "gitmodul": 12, "pull": [12, 26, 28, 31, 58, 59, 61, 93, 101, 116, 122, 125, 126, 132, 135, 140], "request": [12, 26, 28, 32, 36, 37, 47, 58, 61, 77, 88, 93, 94, 98, 101, 103, 116, 118, 125, 127, 132, 140, 151, 158, 164], "init": [12, 27, 30, 42, 48, 56, 59, 61, 143, 151], "leav": [12, 13, 16, 47, 62, 149, 164], "off": [12, 13, 47, 52, 55, 63, 71, 84, 91, 98, 115, 135, 149, 164], "won": [12, 13, 70, 89, 164], "hurt": [12, 67], "maintain": [12, 30, 110, 127, 149, 162, 167], "flavor": [12, 23, 97], "demonstr": [12, 27, 93, 99], "agre": [12, 30, 42, 57, 140, 161, 164, 167], "seen": [12, 24, 34, 38, 39, 40, 52, 76, 101, 148, 153], "cloud": 13, "elast": [13, 75], "sign": [13, 26, 82, 132, 158], "account": [13, 26, 30, 59, 90, 99, 139], "750": 13, "free": [13, 55, 66, 75, 86, 90, 101, 105, 107], "micro": 13, "suffici": [13, 16, 18, 19, 22, 36, 47, 75, 76, 77, 113, 119, 135, 148, 151], "tier": 13, "inform": [13, 14, 24, 27, 34, 35, 37, 38, 39, 49, 50, 51, 52, 53, 54, 62, 67, 77, 82, 83, 84, 88, 89, 94, 96, 98, 99, 100, 102, 103, 109, 111, 124, 127, 128, 130, 136, 138, 139, 140, 143, 146, 148, 149, 151, 158, 161, 162, 165, 166, 167, 168], "uw": [13, 26], "escienc": 13, "aw": 13, "tutori": [13, 31, 59, 84, 87, 91, 96, 105, 111, 114], "gear": 13, "faq": [13, 27, 81], "price": 13, "charg": 13, "per": [13, 32, 37, 47, 49, 55, 63, 71, 76, 97, 149], "thereof": 13, "regardless": [13, 37, 42, 70, 115, 148], "cpu": [13, 56, 124, 127, 129, 161], "consol": [13, 98, 151], "tab": [13, 58, 138], "east": [13, 162], "cheaper": 13, "rate": 13, "menu": [13, 20, 27, 58, 63, 118, 126, 135, 136, 137, 138, 143, 166], "imag": [13, 38, 39, 42, 59, 63, 70, 116, 127, 142], "platform": [13, 55, 91, 99, 110, 116], "finish": [13, 82, 88], "load": [13, 63, 98, 100, 103, 109, 116, 164, 168], "databas": [13, 32, 75, 109, 113, 127, 162], "uwamath": 13, "bar": [13, 58, 158], "screen": [13, 30, 55, 63, 91, 98, 99, 124, 150, 152], "shapshot": 13, "machin": [13, 27, 76, 78, 116, 125, 146], "disk": [13, 47, 88, 97, 98, 116, 125], "ubuntu": 13, "linux": [13, 74, 85, 107, 116, 146], "popup": 13, "look": [13, 14, 24, 27, 30, 32, 42, 55, 58, 59, 63, 71, 82, 84, 89, 94, 99, 103, 104, 108, 109, 111, 116, 120, 127, 136, 142, 148, 149, 151, 161, 164, 165], "sort": [13, 42, 127, 147, 165], "larger": [13, 22, 34, 49, 55, 63, 75, 76, 77, 82, 94, 119, 125, 132, 149, 151, 162], "cost": [13, 104], "continu": [13, 24, 30, 32, 51, 53, 58, 86, 110, 118, 140, 148, 170], "eventu": [13, 48, 130], "don": [13, 29, 30, 58, 59, 82, 97, 98, 99, 105, 116, 150, 165], "pair": [13, 51, 97, 116, 164], "secur": 13, "quick": [13, 27, 39, 48, 50, 60, 85, 116, 160], "close": [13, 42, 55, 58, 63, 70, 71, 97, 115, 118, 130, 149, 158], "back": [13, 29, 31, 58, 59, 126], "statu": [13, 30, 54, 91, 108], "wait": 13, "until": [13, 34, 64, 70, 137, 144], "refresh": [13, 47], "bottom": [13, 15, 19, 32, 38, 39, 48, 52, 68, 70, 75, 88, 101, 102, 125, 126, 145, 156, 157], "scroll": 13, "down": [13, 32, 98, 124, 158, 162, 164], "dn": 13, "screenshot": [13, 55], "rjlkei": 13, "pem": 13, "abl": [13, 58, 111], "ssh": [13, 30], "keypair": 13, "50": [13, 17, 34, 51, 55, 72, 104, 120, 150], "19": [13, 17, 26, 133, 134, 138, 161], "75": [13, 17, 92, 108, 142], "229": 13, "amazonaw": 13, "gfortran": [13, 62, 76, 85, 87, 107, 118, 146, 165], "ipython": [13, 78, 82, 84, 89, 90, 96, 98, 105, 108, 111, 123, 124], "scipi": [13, 37, 89, 110, 137, 158, 164], "netcdf": [13, 37, 44, 48, 124, 127, 129, 131, 158, 164, 166], "apach": 13, "server": [13, 31, 42, 55, 58, 59, 70, 127, 162, 166], "apt": [13, 85], "fetch": [13, 51], "bring": [13, 55, 58, 71, 151], "master": [13, 15, 27, 31, 58, 59, 62, 101, 112, 118, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 141, 145, 156, 157], "make_lib": 13, "compil": [13, 18, 19, 27, 38, 39, 43, 50, 62, 67, 76, 78, 84, 85, 89, 96, 97, 101, 105, 109, 118, 119, 140, 141, 146], "bashrc": [13, 44, 107, 146], "Of": [13, 28, 75, 108, 113, 162], "cours": [13, 28, 34, 47, 50, 64, 75, 99, 100, 108, 110, 113, 151, 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Madsen-Sorensen (MS) equations": [[19, "the-madsen-sorensen-ms-equations"]], "Using the 2d Boussinesq code": [[19, "using-the-2d-boussinesq-code"]], "Prerequisites for the 2d Boussinesq code": [[19, "prerequisites-for-the-2d-boussinesq-code"]], "Wave breaking and switching to SWE": [[19, "wave-breaking-and-switching-to-swe"]], "Examples": [[19, "examples"], [42, "examples"], [47, "examples"], [70, "examples"], [96, "examples"], [142, "examples"]], "Changes to master since v5.9.2": [[20, "changes-to-master-since-v5-9-2"]], "Changes that are not backward compatible": [[20, "changes-that-are-not-backward-compatible"], [118, "changes-that-are-not-backward-compatible"], [127, "changes-that-are-not-backward-compatible"], [128, "changes-that-are-not-backward-compatible"], [129, "changes-that-are-not-backward-compatible"], [130, "changes-that-are-not-backward-compatible"], [131, "changes-that-are-not-backward-compatible"], [132, "changes-that-are-not-backward-compatible"], [133, "changes-that-are-not-backward-compatible"], [134, "changes-that-are-not-backward-compatible"], [135, "changes-that-are-not-backward-compatible"]], "General changes": [[20, "general-changes"], [127, "general-changes"], [128, "general-changes"], [129, "general-changes"], [130, "general-changes"], [131, "general-changes"], [132, "general-changes"], [133, "general-changes"], [134, "general-changes"], [135, "general-changes"], [137, "general-changes"]], "Changes to classic": [[20, "changes-to-classic"], [118, "changes-to-classic"], [119, "changes-to-classic"], [120, "changes-to-classic"], [121, "changes-to-classic"], [122, "changes-to-classic"], [123, "changes-to-classic"], [124, "changes-to-classic"], [125, "changes-to-classic"], [126, "changes-to-classic"], [127, "changes-to-classic"], [128, "changes-to-classic"], [129, "changes-to-classic"], [130, "changes-to-classic"], [131, "changes-to-classic"], [132, "changes-to-classic"], [133, "changes-to-classic"], [134, "changes-to-classic"], [135, "changes-to-classic"], [136, "changes-to-classic"], [137, "changes-to-classic"]], "Changes to clawutil": [[20, "changes-to-clawutil"], [118, "changes-to-clawutil"], [119, "changes-to-clawutil"], [120, "changes-to-clawutil"], [121, "changes-to-clawutil"], [122, "changes-to-clawutil"], [123, "changes-to-clawutil"], [124, "changes-to-clawutil"], [125, "changes-to-clawutil"], [126, "changes-to-clawutil"], [127, "changes-to-clawutil"], [128, "changes-to-clawutil"], [129, "changes-to-clawutil"], [130, "changes-to-clawutil"], [131, "changes-to-clawutil"], [132, "changes-to-clawutil"], [133, "changes-to-clawutil"], [134, "changes-to-clawutil"], [135, "changes-to-clawutil"], [136, "changes-to-clawutil"], [137, "changes-to-clawutil"]], "Changes to visclaw": [[20, "changes-to-visclaw"], [118, "changes-to-visclaw"], [119, "changes-to-visclaw"], [120, "changes-to-visclaw"], [121, "changes-to-visclaw"], [122, "changes-to-visclaw"], [123, "changes-to-visclaw"], [124, "changes-to-visclaw"], [125, "changes-to-visclaw"], [126, "changes-to-visclaw"], [127, "changes-to-visclaw"], [128, "changes-to-visclaw"], [129, "changes-to-visclaw"], [130, "changes-to-visclaw"], [131, "changes-to-visclaw"], [132, "changes-to-visclaw"], [133, "changes-to-visclaw"], [134, "changes-to-visclaw"], [135, "changes-to-visclaw"], [136, "changes-to-visclaw"], [137, "changes-to-visclaw"]], "Changes to riemann": [[20, "changes-to-riemann"], [118, "changes-to-riemann"], [119, "changes-to-riemann"], [120, "changes-to-riemann"], [121, "changes-to-riemann"], [122, "changes-to-riemann"], [123, "changes-to-riemann"], [124, "changes-to-riemann"], [125, "changes-to-riemann"], [126, "changes-to-riemann"], [127, "changes-to-riemann"], [128, "changes-to-riemann"], [129, "changes-to-riemann"], [130, "changes-to-riemann"], [131, "changes-to-riemann"], [132, "changes-to-riemann"], [133, "changes-to-riemann"], [134, "changes-to-riemann"], [135, "changes-to-riemann"], [136, "changes-to-riemann"], [137, "changes-to-riemann"]], "Changes to amrclaw": [[20, "changes-to-amrclaw"], [118, "changes-to-amrclaw"], [119, "changes-to-amrclaw"], [120, "changes-to-amrclaw"], [121, "changes-to-amrclaw"], [122, "changes-to-amrclaw"], [123, "changes-to-amrclaw"], [124, "changes-to-amrclaw"], [125, "changes-to-amrclaw"], [126, "changes-to-amrclaw"], [127, "changes-to-amrclaw"], [128, "changes-to-amrclaw"], [129, "changes-to-amrclaw"], [130, "changes-to-amrclaw"], [131, "changes-to-amrclaw"], [132, "changes-to-amrclaw"], [133, "changes-to-amrclaw"], [134, "changes-to-amrclaw"], [135, "changes-to-amrclaw"], [136, "changes-to-amrclaw"], [137, "changes-to-amrclaw"]], "Changes to geoclaw": [[20, "changes-to-geoclaw"], [118, "changes-to-geoclaw"], [119, "changes-to-geoclaw"], [120, "changes-to-geoclaw"], [121, "changes-to-geoclaw"], [122, "changes-to-geoclaw"], [123, "changes-to-geoclaw"], [124, "changes-to-geoclaw"], [125, "changes-to-geoclaw"], [126, "changes-to-geoclaw"], [127, "changes-to-geoclaw"], [128, "changes-to-geoclaw"], [129, "changes-to-geoclaw"], [130, "changes-to-geoclaw"], [131, "changes-to-geoclaw"], [132, "changes-to-geoclaw"], [133, "changes-to-geoclaw"], [134, "changes-to-geoclaw"], [135, "changes-to-geoclaw"], [136, "changes-to-geoclaw"], [137, "changes-to-geoclaw"]], "Changes to PyClaw": [[20, "changes-to-pyclaw"], [117, "changes-to-pyclaw"], [118, "changes-to-pyclaw"], [119, "changes-to-pyclaw"], [120, "changes-to-pyclaw"], [121, "changes-to-pyclaw"], [122, "changes-to-pyclaw"], [123, "changes-to-pyclaw"], [124, "changes-to-pyclaw"], [125, "changes-to-pyclaw"], [126, "changes-to-pyclaw"], [127, "changes-to-pyclaw"], [128, "changes-to-pyclaw"], [129, "changes-to-pyclaw"], [130, "changes-to-pyclaw"], [131, "changes-to-pyclaw"], [132, "changes-to-pyclaw"], [133, "changes-to-pyclaw"], [134, "changes-to-pyclaw"], [135, "changes-to-pyclaw"], [136, "changes-to-pyclaw"], [137, "changes-to-pyclaw"]], "Other Clawpack Repositories": [[20, "other-clawpack-repositories"], [118, "other-clawpack-repositories"], [126, "other-clawpack-repositories"], [127, "other-clawpack-repositories"], [128, "other-clawpack-repositories"], [129, "other-clawpack-repositories"], [130, "other-clawpack-repositories"], [131, "other-clawpack-repositories"], [132, "other-clawpack-repositories"], [133, "other-clawpack-repositories"], [134, "other-clawpack-repositories"], [135, "other-clawpack-repositories"], [136, "other-clawpack-repositories"], [137, "other-clawpack-repositories"]], "Converting from Clawpack 4.3 to 4.6": [[21, "converting-from-clawpack-4-3-to-4-6"]], "Converting from Clawpack 4.6 to 5.0": [[22, "converting-from-clawpack-4-6-to-5-0"]], "Python conversion tool": [[22, "python-conversion-tool"]], "Clawpack 4.x links": [[23, "clawpack-4-x-links"]], "Changes in Clawpack 5.0": [[24, "changes-in-clawpack-5-0"]], "PyClaw in 5.0": [[24, "pyclaw-in-5-0"]], "Fortran package changes": [[24, "fortran-package-changes"]], "Changes to input parameters in setrun.py from 4.x to 5.0": [[24, "changes-to-input-parameters-in-setrun-py-from-4-x-to-5-0"]], "Changes to general parameters": [[24, "changes-to-general-parameters"]], "Changes to AMR parameters": [[24, "changes-to-amr-parameters"]], "Changes to GeoClaw parameters": [[24, "changes-to-geoclaw-parameters"]], "Changes to plotting routines": [[24, "changes-to-plotting-routines"]], "Clawpack components": [[25, "clawpack-components"]], "Other repositories": [[25, "other-repositories"]], "Clawpack Community": [[26, "clawpack-community"]], "User Workshops, Clinics, and Tutorials": [[26, "user-workshops-clinics-and-tutorials"]], "Available for streaming": [[26, "available-for-streaming"]], "Upcoming": [[26, "upcoming"], [26, "id1"]], "Recent": [[26, "recent"]], "Developer Workshops and Sprint Sessions": [[26, "developer-workshops-and-sprint-sessions"]], "Previous": [[26, "previous"]], "Other Clawpack events": [[26, "other-clawpack-events"]], "Contents": [[27, "id1"], [30, "contents"], [42, "contents"], [70, "contents"], [82, "contents"], [88, "contents"], [98, "contents"], [104, "contents"], [116, "contents"], [142, "contents"]], "Full Table of Contents": [[27, "full-table-of-contents"]], "Overview and Getting Started": [[27, "overview-and-getting-started"]], "Examples and Applications": [[27, "examples-and-applications"]], "Classic, AMRClaw, and GeoClaw": [[27, "classic-amrclaw-and-geoclaw"]], "Using the Fortran codes": [[27, "using-the-fortran-codes"]], "AMRClaw: adaptive mesh refinement": [[27, "amrclaw-adaptive-mesh-refinement"]], "GeoClaw: geophysical flows": [[27, "geoclaw-geophysical-flows"]], "PyClaw": [[27, "pyclaw"], [38, "pyclaw"], [96, "pyclaw"], [116, "pyclaw"], [160, "pyclaw"]], "Riemann": [[27, "riemann"]], "VisClaw: Plotting and Visualization Tools": [[27, "visclaw-plotting-and-visualization-tools"]], "Migrating applications from older versions of Clawpack": [[27, "migrating-applications-from-older-versions-of-clawpack"]], "Developers\u2019 resources": [[27, "developers-resources"]], "References": [[27, "references"], [56, "references"]], "Contributing examples and applications": [[28, "contributing-examples-and-applications"]], "current_data": [[29, "current-data"]], "Attributes of current_data:": [[29, "attributes-of-current-data"]], "Developers\u2019 Guide": [[30, "developers-guide"]], "Guidelines for contributing": [[30, "guidelines-for-contributing"]], "Reporting and fixing bugs": [[30, "reporting-and-fixing-bugs"]], "Developer communication": [[30, "developer-communication"]], "Installation instructions for developers": [[30, "installation-instructions-for-developers"]], "Cloning the most recent code from Github": [[30, "cloning-the-most-recent-code-from-github"]], "Checking out the master branch on each repository": [[30, "checking-out-the-master-branch-on-each-repository"]], "Updating to the latest master branch": [[30, "updating-to-the-latest-master-branch"]], "Never commit to master": [[30, "never-commit-to-master"]], "Adding your fork as a remote": [[30, "adding-your-fork-as-a-remote"]], "Modifying code": [[30, "modifying-code"]], "Issuing a pull request": [[30, "issuing-a-pull-request"]], "Testing a pull request": [[30, "testing-a-pull-request"]], "Top-level pull requests": [[30, "top-level-pull-requests"]], "Git workflow": [[30, "git-workflow"]], "Catching errors with Pyflakes and Pylint": [[30, "catching-errors-with-pyflakes-and-pylint"]], "Checking test coverage": [[30, "checking-test-coverage"]], "Trouble-Shooting Tips": [[30, "trouble-shooting-tips"]], "Docker for Clawpack": [[31, "docker-for-clawpack"]], "Using Version 5.9.0 or above": [[31, "using-version-5-9-0-or-above"]], "Getting started": [[31, "getting-started"]], "Stopping a container": [[31, "stopping-a-container"]], "Restarting a container": [[31, "restarting-a-container"]], "Running Jupyter notebooks": [[31, "running-jupyter-notebooks"]], "Moving files between the docker container and the host machine": [[31, "moving-files-between-the-docker-container-and-the-host-machine"]], "Some other useful docker commands": [[31, "some-other-useful-docker-commands"]], "Creating your own docker image": [[31, "creating-your-own-docker-image"]], "Dockerfiles for binder": [[31, "dockerfiles-for-binder"]], "dtopotools module for moving topography": [[32, "dtopotools-module-for-moving-topography"]], "Documentation auto-generated from the module docstrings": [[32, "module-clawpack.geoclaw.dtopotools"], [35, "module-clawpack.geoclaw.fgmax_tools"], [37, "module-clawpack.geoclaw.fgout_tools"], [51, "module-clawpack.geoclaw.util"], [63, "module-clawpack.geoclaw.kmltools"], [164, "module-clawpack.geoclaw.topotools"]], "Fortran 77 vs. Fortran 90 files": [[33, "fortran-77-vs-fortran-90-files"]], "Fixed grid monitoring (fgmax)": [[34, "fixed-grid-monitoring-fgmax"]], "Input file specification": [[34, "input-file-specification"], [36, "input-file-specification"]], "Different point styles": [[34, "different-point-styles"]], "Other attributes": [[34, "other-attributes"]], "Values to monitor": [[34, "values-to-monitor"]], "Choice of interpolation procedure": [[34, "choice-of-interpolation-procedure"], [36, "choice-of-interpolation-procedure"]], "A simple example": [[34, "a-simple-example"], [36, "a-simple-example"]], "Processing and plotting fgmax output": [[34, "processing-and-plotting-fgmax-output"]], "Format of the output files": [[34, "format-of-the-output-files"]], "fgmax examples": [[34, "fgmax-examples"]], "fgmax_tools module for working with fgmax grids": [[35, "fgmax-tools-module-for-working-with-fgmax-grids"]], "Fixed grid output (fgout)": [[36, "fixed-grid-output-fgout"]], "Format of fgout output": [[36, "format-of-fgout-output"]], "Using setplot.py to produce plots": [[36, "using-setplot-py-to-produce-plots"]], "Reading and plotting fgout arrays directly": [[36, "reading-and-plotting-fgout-arrays-directly"]], "fgout grid registration": [[36, "fgout-grid-registration"]], "fgout examples": [[36, "fgout-examples"]], "fgout_tools module for working with fgout grids": [[37, "fgout-tools-module-for-working-with-fgout-grids"]], "Running an example": [[38, "running-an-example"], [39, "running-an-example"], [40, "running-an-example"]], "Classic": [[38, "classic"], [39, "classic"], [160, "classic"]], "Testing your Fortran installation and running an example": [[39, "testing-your-fortran-installation-and-running-an-example"]], "More examples": [[39, "more-examples"]], "Testing a PyClaw installation and running an example": [[40, "testing-a-pyclaw-installation-and-running-an-example"]], "From the Jupyter notebook": [[40, "from-the-jupyter-notebook"]], "From the IPython interpreter": [[40, "from-the-ipython-interpreter"]], "From the command line": [[40, "from-the-command-line"], [93, "from-the-command-line"]], "Specifying flagregions for adaptive refinement": [[41, "specifying-flagregions-for-adaptive-refinement"]], "Using ruled rectangles as flagregions": [[41, "using-ruled-rectangles-as-flagregions"]], "Force Cells to be Dry Initially": [[42, "force-cells-to-be-dry-initially"]], "Sample topography from a 1/3 arcsecond DEM": [[42, "sample-topography-from-a-1-3-arcsecond-dem"], [70, "sample-topography-from-a-1-3-arcsecond-dem"]], "Creating the force_dry_init array": [[42, "creating-the-force-dry-init-array"]], "Create file to read into GeoClaw": [[42, "create-file-to-read-into-geoclaw"]], "Usage in GeoClaw Fortran code": [[42, "usage-in-geoclaw-fortran-code"]], "Internal GeoClaw modifications": [[42, "internal-geoclaw-modifications"]], "Fortran version": [[43, "fortran-version"]], "Makefiles": [[43, "makefiles"]], "More tips": [[43, "more-tips"]], "Fortran Compilers": [[44, "fortran-compilers"]], "FC environment variable": [[44, "fc-environment-variable"]], "FFLAGS environment variable": [[44, "fflags-environment-variable"]], "LFLAGS environment variable": [[44, "lflags-environment-variable"]], "Pre-Processor and the PPFLAGS environment variable": [[44, "pre-processor-and-the-ppflags-environment-variable"]], "gfortran compiler": [[44, "gfortran-compiler"]], "Intel fortran compiler": [[44, "intel-fortran-compiler"]], "Examples from the book FVMHP": [[45, "examples-from-the-book-fvmhp"]], "Available examples": [[45, "available-examples"]], "YouTube Videos": [[45, "youtube-videos"]], "Clawpack Gallery": [[46, "clawpack-gallery"]], "Gauges": [[47, "gauges"]], "Gauge parameters in setrun": [[47, "gauge-parameters-in-setrun"]], "Plotting tools": [[47, "plotting-tools"]], "Plotting gauge locations": [[47, "plotting-gauge-locations"]], "GeoClaw Description and Detailed Contents": [[48, "geoclaw-description-and-detailed-contents"]], "GeoClaw in One Space Dimension": [[49, "geoclaw-in-one-space-dimension"]], "Coordinate systems": [[49, "coordinate-systems"]], "Uniform and mapped grids": [[49, "uniform-and-mapped-grids"]], "Topograpy data": [[49, "topograpy-data"]], "Moving topograpy (dtopo) data": [[49, "moving-topograpy-dtopo-data"]], "Getting started with GeoClaw": [[50, "getting-started-with-geoclaw"]], "Running a GeoClaw code": [[50, "running-a-geoclaw-code"]], "Topography": [[50, "topography"]], "Plotting GeoClaw results": [[50, "plotting-geoclaw-results"]], "Setting up a new example": [[50, "setting-up-a-new-example"]], "geoclaw.util module of utility functions": [[51, "geoclaw-util-module-of-utility-functions"]], "Cautionary Hints on using GeoClaw": [[52, "cautionary-hints-on-using-geoclaw"]], "Tsunami hazard modeling": [[52, "tsunami-hazard-modeling"]], "GeoClaw plotting tools": [[53, "geoclaw-plotting-tools"]], "Plotting water depth or surface elevation": [[53, "plotting-water-depth-or-surface-elevation"]], "Tips on latitude-longitude coordinate axes": [[53, "tips-on-latitude-longitude-coordinate-axes"]], "Keeping track of repository versions with Git": [[54, "keeping-track-of-repository-versions-with-git"]], "Visualizing GeoClaw results in Google Earth": [[55, "visualizing-geoclaw-results-in-google-earth"]], "Basic requirements": [[55, "basic-requirements"]], "Optional GDAL library": [[55, "optional-gdal-library"]], "An example : The Chile 2010 tsunami event": [[55, "an-example-the-chile-2010-tsunami-event"]], "Plotting attributes needed for Google Earth": [[55, "plotting-attributes-needed-for-google-earth"]], "plotdata attributes": [[55, "plotdata-attributes"]], "plotfigure attributes": [[55, "plotfigure-attributes"]], "Creating the figures": [[55, "creating-the-figures"]], "plotaxes attributes": [[55, "plotaxes-attributes"]], "plotitem attributes": [[55, "plotitem-attributes"]], "Adding a colorbar overlay": [[55, "adding-a-colorbar-overlay"]], "Gauge plots": [[55, "gauge-plots"]], "Additional plotdata attributes": [[55, "additional-plotdata-attributes"]], "Plotting tips": [[55, "plotting-tips"]], "KML and KMZ files": [[55, "kml-and-kmz-files"]], "Tiling images for faster loading": [[55, "tiling-images-for-faster-loading"]], "Removing aliasing artifacts": [[55, "removing-aliasing-artifacts"]], "Creating multiple figures at different resolutions": [[55, "creating-multiple-figures-at-different-resolutions"]], "Mapping topography data to latitude/longitude coordinates": [[55, "mapping-topography-data-to-latitude-longitude-coordinates"]], "Publishing your results": [[55, "id1"]], "Using the GPU version of Clawpack": [[56, "using-the-gpu-version-of-clawpack"]], "Grid registration": [[57, "grid-registration"]], "NetCDF files": [[57, "netcdf-files"]], "Guide for updating this documentation": [[58, "guide-for-updating-this-documentation"]], "Git branches and tags": [[58, "git-branches-and-tags"]], "Configuration and style files": [[58, "configuration-and-style-files"]], "Updating the docs for a new release": [[58, "updating-the-docs-for-a-new-release"]], "To generate docs including previous versions": [[58, "to-generate-docs-including-previous-versions"]], "Updating for a new major version": [[58, "updating-for-a-new-major-version"]], "Updating the gallery": [[58, "updating-the-gallery"]], "Updating the webpages": [[58, "updating-the-webpages"]], "Extra files for webpages not built by Sphinx": [[58, "extra-files-for-webpages-not-built-by-sphinx"]], "Pages from other clawpack repositories": [[58, "pages-from-other-clawpack-repositories"]], "Guide for doing a Clawpack release": [[59, "guide-for-doing-a-clawpack-release"]], "Preparation": [[59, "preparation"]], "Version numbers": [[59, "version-numbers"]], "Release candidates": [[59, "release-candidates"]], "Create a tar file and a Github release": [[59, "create-a-tar-file-and-a-github-release"]], "Final release": [[59, "final-release"]], "Pypi": [[59, "pypi"]], "Zenodo": [[59, "zenodo"]], "Open Science Framework (OSF)": [[59, "open-science-framework-osf"]], "Updating the documentation": [[59, "updating-the-documentation"]], "Updating the apps repository": [[59, "updating-the-apps-repository"]], "Updating the Dockerfile": [[59, "updating-the-dockerfile"]], "Installing Clawpack": [[60, "installing-clawpack"]], "Next steps:": [[60, "next-steps"], [61, "next-steps"], [62, "next-steps"]], "Options for installing Clawpack Fortran codes": [[61, "options-for-installing-clawpack-fortran-codes"]], "tar file": [[61, "tar-file"]], "git clone": [[61, "git-clone"]], "pip install instructions": [[62, "pip-install-instructions"]], "Quick Installation of PyClaw with pip": [[62, "quick-installation-of-pyclaw-with-pip"]], "Quick Installation of all packages with pip": [[62, "quick-installation-of-all-packages-with-pip"]], "Using pip to install a different version": [[62, "using-pip-to-install-a-different-version"]], "Experimenting with code in the examples directories": [[62, "experimenting-with-code-in-the-examples-directories"]], "Troubleshooting pip install": [[62, "troubleshooting-pip-install"]], "kmltools module of utility functions": [[63, "kmltools-module-of-utility-functions"]], "Lagrangian gauges for particle tracking": [[64, "lagrangian-gauges-for-particle-tracking"]], "Specifying Lagrangian Gauges": [[64, "specifying-lagrangian-gauges"]], "Visclaw tools for plotting": [[64, "visclaw-tools-for-plotting"]], "An alternative using fgout grids": [[64, "an-alternative-using-fgout-grids"]], "Clawpack Makefiles": [[66, "clawpack-makefiles"]], "Applications directory Makefiles": [[66, "applications-directory-makefiles"]], "output": [[66, "output"]], "plots": [[66, "plots"]], "Variables": [[66, "variables"]], "Compiler flags": [[66, "compiler-flags"]], "Duplicate Base Source Name": [[66, "duplicate-base-source-name"]], "Library routines in Makefiles": [[67, "library-routines-in-makefiles"]], "Replacing files with the same name as library files": [[67, "replacing-files-with-the-same-name-as-library-files"]], "Using a modified library routine with a different name": [[67, "using-a-modified-library-routine-with-a-different-name"]], "Manning friction term": [[68, "manning-friction-term"]], "The mapc2p function": [[69, "the-mapc2p-function"]], "Marching Front algorithm": [[70, "marching-front-algorithm"]], "Function arguments": [[70, "function-arguments"]], "output array": [[70, "output-array"]], "creating a masked array": [[70, "creating-a-masked-array"]], "topofile mask for initializing dry points": [[70, "topofile-mask-for-initializing-dry-points"]], "fgmax points": [[70, "fgmax-points"]], "flag regions": [[70, "flag-regions"]], "The mask argument": [[70, "the-mask-argument"]], "The previous_pts_chosen argument": [[70, "the-previous-pts-chosen-argument"]], "Finding all points below a given elevation": [[70, "finding-all-points-below-a-given-elevation"]], "Create a buffer zone along shore": [[70, "create-a-buffer-zone-along-shore"]], "Choose points only near shore": [[70, "choose-points-only-near-shore"]], "Write out the masked array indicating fgmax points": [[70, "write-out-the-masked-array-indicating-fgmax-points"]], "Creating an AMR flag region": [[70, "creating-an-amr-flag-region"]], "Determining dry areas below MHW": [[70, "determining-dry-areas-below-mhw"]], "Plotting using Matlab": [[71, "plotting-using-matlab"]], "The Matlab search path": [[71, "the-matlab-search-path"]], "Creating output files": [[71, "creating-output-files"]], "The plotclaw command": [[71, "the-plotclaw-command"]], "The setplot file": [[71, "the-setplot-file"]], "The afterframe file": [[71, "the-afterframe-file"]], "Getting help": [[71, "getting-help"]], "Trouble shooting": [[71, "trouble-shooting"]], "Output files not found": [[71, "output-files-not-found"]], "MaxFrames not set": [[71, "maxframes-not-set"]], "Switching examples": [[71, "switching-examples"]], "Matlab Gallery": [[71, "matlab-gallery"]], "Nearshore interpolation": [[72, "nearshore-interpolation"]], "Using NetCDF output": [[73, "using-netcdf-output"]], "Creating a new application directory": [[74, "creating-a-new-application-directory"]], "Copying an existing example": [[74, "copying-an-existing-example"]], "Earthquake sources: Fault slip and the Okada model": [[75, "earthquake-sources-fault-slip-and-the-okada-model"]], "Fault slip on rectangular subfaults": [[75, "fault-slip-on-rectangular-subfaults"]], "Okada model": [[75, "okada-model"]], "Kinematic rupture": [[75, "kinematic-rupture"]], "Fault slip on triangular subfaults": [[75, "fault-slip-on-triangular-subfaults"]], "Using OpenMP": [[76, "using-openmp"]], "Using OpenMP with AMR": [[76, "using-openmp-with-amr"]], "Fixed grid output in GeoClaw": [[76, "fixed-grid-output-in-geoclaw"]], "Output data sytles and formats": [[77, "output-data-sytles-and-formats"]], "Output style": [[77, "output-style"]], "Output data formats": [[77, "output-data-formats"]], "ASCII output data format": [[77, "ascii-output-data-format"]], "fort.t0002": [[77, "fort-t0002"]], "fort.q0002": [[77, "fort-q0002"]], "Raw binary output data formats": [[77, "raw-binary-output-data-formats"]], "NetCDF output data format": [[77, "netcdf-output-data-format"]], "Output of aux arrays": [[77, "output-of-aux-arrays"]], "Which Clawpack solver should I use?": [[78, "which-clawpack-solver-should-i-use"]], "Installation and user interface": [[78, "installation-and-user-interface"]], "Algorithmic differences": [[78, "algorithmic-differences"]], "Parallel computing": [[78, "parallel-computing"]], "Clawpack Community Photos": [[79, "clawpack-community-photos"]], "2016 Developers\u2019 workshop at University of Washington": [[79, "id1"]], "2015 Developers\u2019 workshop at University of Utah": [[79, "id2"]], "2014 HPC3 workshop at KAUST": [[79, "id3"]], "2013 Claw-Dev workshop at UW": [[79, "id4"]], "2012 HPC3 workshop at KAUST": [[79, "id6"]], "2011 coding sprints at UW": [[79, "coding-sprints-at-uw"]], "2010 GeoClaw hacking UW": [[79, "geoclaw-hacking-uw"]], "Plotting examples": [[80, "plotting-examples"]], "Plotting with Visclaw": [[81, "plotting-with-visclaw"]], "Plotting as post-processing": [[81, "plotting-as-post-processing"]], "Plotting on the fly": [[81, "plotting-on-the-fly"]], "Plotting hints and FAQ": [[82, "plotting-hints-and-faq"]], "What\u2019s the difference between make .plots and make plots ?": [[82, "what-s-the-difference-between-make-plots-and-make-plots"]], "How to plot a something other than a component of q?": [[82, "how-to-plot-a-something-other-than-a-component-of-q"]], "How to add another curve to a plot, e.g. the true solution?": [[82, "how-to-add-another-curve-to-a-plot-e-g-the-true-solution"]], "How to change the title in a plot?": [[82, "how-to-change-the-title-in-a-plot"]], "How to specify outdir, the directory to find fort.* files for plotting?": [[82, "how-to-specify-outdir-the-directory-to-find-fort-files-for-plotting"]], "How to specify a different outdir for some plot item?": [[82, "how-to-specify-a-different-outdir-for-some-plot-item"]], "How to set plot parameters that are not provided as attributes of ClawPlotItem?": [[82, "how-to-set-plot-parameters-that-are-not-provided-as-attributes-of-clawplotitem"]], "How to change the size or background color of a figure?": [[82, "how-to-change-the-size-or-background-color-of-a-figure"]], "Specifying colormaps for pcolor or contourf plots": [[82, "specifying-colormaps-for-pcolor-or-contourf-plots"]], "How to debug setplot.py?": [[82, "how-to-debug-setplot-py"]], "Plotting routines for GeoClaw": [[83, "plotting-routines-for-geoclaw"]], "Plotting options in Python": [[84, "plotting-options-in-python"]], "Producing html plots from the command line": [[84, "producing-html-plots-from-the-command-line"]], "Producing a latex file with plots from the command line": [[84, "producing-a-latex-file-with-plots-from-the-command-line"]], "Setting plot parameters with a setplot function": [[84, "setting-plot-parameters-with-a-setplot-function"]], "Interactive plotting with Iplotclaw": [[84, "interactive-plotting-with-iplotclaw"]], "Access to current_data": [[84, "access-to-current-data"]], "printframes": [[84, "printframes"]], "Specifying what and how to plot": [[84, "specifying-what-and-how-to-plot"]], "Installation Prerequisites": [[85, "installation-prerequisites"]], "Operating system": [[85, "operating-system"]], "Fortran": [[85, "fortran"]], "Python": [[85, "python"]], "pip": [[85, "pip"]], "Git": [[85, "git"]], "About PyClaw": [[86, "about-pyclaw"]], "Contributors": [[86, "contributors"]], "PyClaw Basics": [[87, "pyclaw-basics"]], "Understanding Pyclaw Classes": [[88, "understanding-pyclaw-classes"]], "Flow of a Pyclaw Simulation": [[88, "flow-of-a-pyclaw-simulation"]], "Creation of a Pyclaw Solution": [[88, "creation-of-a-pyclaw-solution"]], "Creation of a Pyclaw Solver": [[88, "creation-of-a-pyclaw-solver"]], "Creating and Running a Simulation with Controller": [[88, "creating-and-running-a-simulation-with-controller"]], "Restarting a simulation": [[88, "restarting-a-simulation"]], "Outputting aux values": [[88, "outputting-aux-values"]], "Outputting derived quantities": [[88, "outputting-derived-quantities"], [98, "outputting-derived-quantities"]], "Porting a problem from Clawpack 4.6.x to PyClaw": [[89, "porting-a-problem-from-clawpack-4-6-x-to-pyclaw"]], "Running PyClaw in the cloud": [[90, "running-pyclaw-in-the-cloud"]], "Sage Math Cloud": [[90, "sage-math-cloud"]], "Pyclaw Controller Class": [[91, "pyclaw-controller-class"]], "pyclaw.controller.Controller": [[91, "pyclaw-controller-controller"]], "Pyclaw Limiters": [[92, "pyclaw-limiters"]], "clawpack.pyclaw.limiters.tvd": [[92, "module-clawpack.pyclaw.limiters.tvd"]], "CFL Independent Limiters": [[92, "cfl-independent-limiters"]], "CFL Dependent Limiters": [[92, "cfl-dependent-limiters"]], "Working with PyClaw\u2019s built-in examples": [[93, "working-with-pyclaw-s-built-in-examples"]], "Running and plotting examples": [[93, "running-and-plotting-examples"]], "Interactively in IPython": [[93, "interactively-in-ipython"]], "Built-in examples": [[93, "built-in-examples"]], "Adding new examples": [[93, "adding-new-examples"]], "PyClaw Geometry": [[94, "pyclaw-geometry"]], "Serial Geometry Objects": [[94, "serial-geometry-objects"]], "pyclaw.geometry.Domain": [[94, "pyclaw-geometry-domain"]], "pyclaw.geometry.Patch": [[94, "pyclaw-geometry-patch"]], "pyclaw.geometry.Grid": [[94, "pyclaw-geometry-grid"]], "pyclaw.geometry.Dimension": [[94, "pyclaw-geometry-dimension"]], "Parallel Geometry Objects": [[94, "parallel-geometry-objects"]], "petclaw.geometry.Domain": [[94, "petclaw-geometry-domain"]], "petclaw.geometry.Patch": [[94, "petclaw-geometry-patch"]], "Going Further": [[95, "going-further"]], "PyClaw installation": [[96, "pyclaw-installation"]], "Features": [[96, "features"]], "PyClaw Documentation": [[96, "pyclaw-documentation"]], "PyClaw Modules reference documentation": [[96, "pyclaw-modules-reference-documentation"]], "Riemann Solvers reference documentation": [[96, "riemann-solvers-reference-documentation"]], "Indices and tables": [[96, "indices-and-tables"]], "Citing PyClaw": [[96, "citing-pyclaw"]], "Pyclaw Input/Output Package": [[97, "pyclaw-input-output-package"]], "pyclaw.fileio.ascii": [[97, "module-clawpack.pyclaw.fileio.ascii"]], "pyclaw.fileio.binary": [[97, "module-clawpack.pyclaw.fileio.binary"]], "pyclaw.fileio.hdf5": [[97, "module-clawpack.pyclaw.fileio.hdf5"]], "pyclaw.fileio.netcdf": [[97, "module-clawpack.pyclaw.fileio.netcdf"]], "PyClaw output": [[98, "pyclaw-output"]], "Output frames": [[98, "output-frames"]], "When output is saved/written": [[98, "when-output-is-saved-written"]], "Where and how output is written": [[98, "where-and-how-output-is-written"]], "What output is written": [[98, "what-output-is-written"]], "Outputting functionals": [[98, "outputting-functionals"]], "Using gauges": [[98, "using-gauges"]], "Logging": [[98, "logging"]], "Running in parallel": [[99, "running-in-parallel"]], "Installing PETSc": [[99, "installing-petsc"]], "Testing your installation": [[99, "testing-your-installation"], [160, "testing-your-installation"]], "Running and plotting an example": [[99, "running-and-plotting-an-example"]], "Tips for making your application run correctly in parallel": [[99, "tips-for-making-your-application-run-correctly-in-parallel"]], "Passing options to PETSc": [[99, "passing-options-to-petsc"]], "Plotting PyClaw results": [[100, "plotting-pyclaw-results"]], "Basics": [[100, "basics"]], "Plotting result from parallel runs": [[100, "plotting-result-from-parallel-runs"]], "Setting up your own problem": [[101, "setting-up-your-own-problem"]], "Writing the initialization script": [[101, "writing-the-initialization-script"]], "Setting initial conditions": [[101, "setting-initial-conditions"]], "Setting auxiliary variables": [[101, "setting-auxiliary-variables"]], "Setting boundary conditions": [[101, "setting-boundary-conditions"]], "Setting solver options": [[101, "setting-solver-options"]], "Using your own Riemann solver": [[101, "using-your-own-riemann-solver"]], "Adding source terms": [[101, "adding-source-terms"]], "Setting up the Makefile": [[101, "setting-up-the-makefile"]], "Riemann Solver Package": [[102, "riemann-solver-package"]], "Acoustics": [[102, "acoustics"]], "Advection": [[102, "advection"]], "Burgers Equation": [[102, "burgers-equation"]], "Euler Equations": [[102, "euler-equations"]], "Shallow Water Equations": [[102, "shallow-water-equations"]], "PyClaw Solutions": [[103, "pyclaw-solutions"]], "pyclaw.solution.Solution": [[103, "pyclaw-solution-solution"]], "Using PyClaw\u2019s solvers: Classic and SharpClaw": [[104, "using-pyclaw-s-solvers-classic-and-sharpclaw"]], "SharpClaw Solvers": [[104, "sharpclaw-solvers"]], "pyclaw.sharpclaw": [[104, "pyclaw-sharpclaw"]], "Pyclaw Classic Clawpack Solvers": [[104, "pyclaw-classic-clawpack-solvers"]], "pyclaw.classic.solver": [[104, "pyclaw-classic-solver"]], "Change to Custom BC Function Signatures": [[104, "change-to-custom-bc-function-signatures"]], "Installing PyClaw": [[105, "installing-pyclaw"]], "Dependencies: Python, gfortran, numpy, and matplotlib": [[105, "dependencies-python-gfortran-numpy-and-matplotlib"]], "Obtaining Python, numpy, and matplotlib": [[105, "obtaining-python-numpy-and-matplotlib"]], "Clawpack": [[105, "clawpack"]], "Testing your installation with nose": [[105, "testing-your-installation-with-nose"]], "Next steps": [[105, "next-steps"]], "PyClaw State": [[106, "pyclaw-state"]], "Serial pyclaw.state.State": [[106, "serial-pyclaw-state-state"]], "Parallel petclaw.state.State": [[106, "parallel-petclaw-state-state"]], "Troubleshooting": [[107, "troubleshooting"], [165, "troubleshooting"]], "Compilation errors": [[107, "compilation-errors"]], "Use Fortran-ordered arrays": [[107, "use-fortran-ordered-arrays"]], "Installation": [[107, "installation"]], "PyClaw tutorial: Solve the acoustics equations": [[108, "pyclaw-tutorial-solve-the-acoustics-equations"]], "The Solver": [[108, "the-solver"]], "The domain": [[108, "the-domain"]], "Initial condition": [[108, "initial-condition"]], "Problem-specific parameters": [[108, "problem-specific-parameters"]], "The controller": [[108, "the-controller"]], "Pyclaw Utility Module": [[109, "pyclaw-utility-module"]], "pyclaw.util": [[109, "module-clawpack.pyclaw.util"]], "Python Hints": [[110, "python-hints"]], "Dropping support for Python 2.7": [[110, "dropping-support-for-python-2-7"]], "References and tutorials": [[110, "references-and-tutorials"]], "Notebooks": [[110, "notebooks"]], "Python path": [[111, "python-path"]], "whichclaw.py": [[111, "whichclaw-py"]], "Which version was imported?": [[111, "which-version-was-imported"]], "sys.path": [[111, "sys-path"]], "easy-install.pth": [[111, "easy-install-pth"]], "PYTHONPATH": [[111, "pythonpath"], [146, "pythonpath"]], "qinit default routines": [[112, "qinit-default-routines"]], "qinit routine in GeoClaw": [[112, "qinit-routine-in-geoclaw"]], "Quick start guide for storm surge modeling": [[113, "quick-start-guide-for-storm-surge-modeling"]], "Quick start guide for tsunami modeling": [[114, "quick-start-guide-for-tsunami-modeling"]], "AMR refinement criteria": [[115, "amr-refinement-criteria"]], "Flagging criteria": [[115, "flagging-criteria"]], "flag2refine": [[115, "flag2refine"]], "Richardson extrapolation": [[115, "richardson-extrapolation"]], "Specifying AMR regions": [[115, "specifying-amr-regions"]], "Implementation": [[115, "implementation"]], "Flagging criteria in GeoClaw": [[115, "flagging-criteria-in-geoclaw"]], "Regression testing": [[116, "regression-testing"]], "Running the tests": [[116, "running-the-tests"], [116, "id2"]], "Fortran codes": [[116, "fortran-codes"]], "Travis continuous integration": [[116, "travis-continuous-integration"]], "Diff tools for checking test output": [[116, "diff-tools-for-checking-test-output"]], "chardiff tool for line-by-line comparison of output files": [[116, "chardiff-tool-for-line-by-line-comparison-of-output-files"]], "imagediff tool for pixel comparison of plots": [[116, "imagediff-tool-for-pixel-comparison-of-plots"]], "Running and writing tests in PyClaw": [[116, "running-and-writing-tests-in-pyclaw"]], "Running serial tests simultaneously": [[116, "running-serial-tests-simultaneously"]], "Running a specific test": [[116, "running-a-specific-test"]], "Doctests": [[116, "doctests"]], "Writing New Tests": [[116, "writing-new-tests"]], "v5.0.0 release notes": [[117, "v5-0-0-release-notes"]], "Changes to classic, riemann, amrclaw, geoclaw, visclaw": [[117, "changes-to-classic-riemann-amrclaw-geoclaw-visclaw"]], "v5.10.0 release notes": [[118, "v5-10-0-release-notes"]], "v5.1.0 release notes": [[119, "v5-1-0-release-notes"]], "v5.2.0 release notes": [[120, "v5-2-0-release-notes"]], "v5.2.1 release notes": [[121, "v5-2-1-release-notes"]], "v5.2.2 release notes": [[122, "v5-2-2-release-notes"]], "v5.3.0 release notes": [[123, "v5-3-0-release-notes"]], "v5.3.1 release notes": [[124, "v5-3-1-release-notes"]], "v5.4.0 release notes": [[125, "v5-4-0-release-notes"]], "Global changes": [[125, "global-changes"]], "v5.4.1 release notes": [[126, "v5-4-1-release-notes"]], "Changes to documentation": [[126, "changes-to-documentation"], [127, "changes-to-documentation"]], "v5.5.0 release notes": [[127, "v5-5-0-release-notes"]], "v5.6.0 release notes": [[128, "v5-6-0-release-notes"]], "v5.6.1 release notes": [[129, "v5-6-1-release-notes"]], "v5.7.0 release notes": [[130, "v5-7-0-release-notes"]], "Python support": [[130, "python-support"]], "v5.7.1 release notes": [[131, "v5-7-1-release-notes"]], "v5.8.0 release notes": [[132, "v5-8-0-release-notes"]], "v5.8.1 release notes": [[133, "v5-8-1-release-notes"]], "v5.8.2 release notes": [[134, "v5-8-2-release-notes"]], "v5.9.0 release notes": [[135, "v5-9-0-release-notes"]], "v5.9.1 release notes": [[136, "v5-9-1-release-notes"]], "v5.9.2 release notes": [[137, "v5-9-2-release-notes"]], "Releases of Clawpack and release notes": [[138, "releases-of-clawpack-and-release-notes"]], "Other notes:": [[138, "other-notes"]], "Releases:": [[138, "id1"]], "Clawpack 4.x": [[138, "clawpack-4-x"]], "Checkpointing and restarting": [[139, "checkpointing-and-restarting"]], "Checkpointing a computation": [[139, "checkpointing-a-computation"]], "Restarting a computation": [[139, "restarting-a-computation"]], "Modifying the Makefile for a restart": [[139, "modifying-the-makefile-for-a-restart"]], "Output files after a restart": [[139, "output-files-after-a-restart"]], "Riemann solvers": [[140, "riemann-solvers"]], "One-dimensional Riemann solver": [[140, "one-dimensional-riemann-solver"]], "Pointwise Riemann solvers": [[140, "pointwise-riemann-solvers"]], "f-wave Riemann solvers": [[140, "f-wave-riemann-solvers"]], "2D Riemann solvers": [[140, "d-riemann-solvers"]], "Using a custom solver": [[140, "using-a-custom-solver"]], "Adding a solver to the Riemann repository": [[140, "adding-a-solver-to-the-riemann-repository"]], "Shallow water Riemann solvers in Clawpack": [[141, "shallow-water-riemann-solvers-in-clawpack"]], "One dimension": [[141, "one-dimension"]], "Two dimensions": [[141, "two-dimensions"]], "Layered shallow water equations": [[141, "layered-shallow-water-equations"]], "Potentially useful contributions (what\u2019s missing)": [[141, "potentially-useful-contributions-whats-missing"]], "Demonstrations": [[141, "demonstrations"]], "Roe": [[141, "roe"]], "HLL": [[141, "hll"]], "Ruled Rectangles": [[142, "ruled-rectangles"]], "Relation to convex polygons": [[142, "relation-to-convex-polygons"]], "Other attributes and methods": [[142, "other-attributes-and-methods"]], "ds": [[142, "ds"]], "slu": [[142, "slu"]], "bounding_box": [[142, "bounding-box"]], "mask_outside": [[142, "mask-outside"]], "read and write, and instantiating from a file": [[142, "read-and-write-and-instantiating-from-a-file"]], "make_kml": [[142, "make-kml"]], "A GeoClaw AMR flag region": [[142, "a-geoclaw-amr-flag-region"]], "A simple rectangle": [[142, "a-simple-rectangle"]], "Defining a Ruled Rectangle covering selected cells": [[142, "defining-a-ruled-rectangle-covering-selected-cells"]], "Example covering the continental shelf": [[142, "example-covering-the-continental-shelf"]], "Setting sea_level": [[143, "setting-sea-level"]], "Set Eta Init \u2013 spatially varying initial surface elevation": [[144, "set-eta-init-spatially-varying-initial-surface-elevation"]], "Default behavior, adjusting sea level by seismic deformation": [[144, "default-behavior-adjusting-sea-level-by-seismic-deformation"]], "Other use cases": [[144, "other-use-cases"]], "setaux default routines": [[145, "setaux-default-routines"]], "setaux routine in GeoClaw": [[145, "setaux-routine-in-geoclaw"]], "Set environment variables": [[146, "set-environment-variables"]], "CLAW": [[146, "claw"]], "FC": [[146, "fc"]], "Using setplot.py to specify the desired plots": [[147, "using-setplot-py-to-specify-the-desired-plots"]], "Plotting Data Objects": [[147, "plotting-data-objects"]], "Overview": [[147, "overview"]], "Specifying classic run-time parameters in setrun.py": [[148, "specifying-classic-run-time-parameters-in-setrun-py"]], "Input": [[148, "input"], [149, "input"]], "Output": [[148, "output"], [149, "output"]], "Run-time parameters": [[148, "run-time-parameters"], [149, "run-time-parameters"]], "Specifying AMRClaw run-time parameters in setrun.py": [[149, "specifying-amrclaw-run-time-parameters-in-setrun-py"]], "Special AMR parameters": [[149, "special-amr-parameters"]], "Debugging flags for additional printing": [[149, "debugging-flags-for-additional-printing"]], "Sample setrun.py module for AMRClaw": [[150, "sample-setrun-py-module-for-amrclaw"]], "Specifying GeoClaw parameters in setrun.py": [[151, "specifying-geoclaw-parameters-in-setrun-py"]], "Additional AMR parameters": [[151, "additional-amr-parameters"]], "General geo parameters": [[151, "general-geo-parameters"]], "Topography data file parameters": [[151, "topography-data-file-parameters"]], "qinit data file parameters": [[151, "qinit-data-file-parameters"]], "Force some cells to be initially dry": [[151, "force-some-cells-to-be-initially-dry"]], "Adjust sea level in some regions": [[151, "adjust-sea-level-in-some-regions"]], "AMR refinement region parameters": [[151, "amr-refinement-region-parameters"]], "Deprecated Fixedgrid output parameters": [[151, "deprecated-fixedgrid-output-parameters"]], "Fixed grid maximum monitoring / arrival times": [[151, "fixed-grid-maximum-monitoring-arrival-times"]], "Fixed grid output": [[151, "fixed-grid-output"]], "Storm Specification Data": [[151, "storm-specification-data"]], "Sample setrun.py module for classic Clawpack": [[152, "sample-setrun-py-module-for-classic-clawpack"]], "Saving and sharing results": [[153, "saving-and-sharing-results"]], "Making webpages of plots": [[153, "making-webpages-of-plots"]], "Sharing your results": [[153, "sharing-your-results"]], "Jupyter notebooks": [[153, "jupyter-notebooks"]], "Source terms for shallow water on the sphere": [[154, "source-terms-for-shallow-water-on-the-sphere"]], "Compiling the Sphinx documentation locally": [[155, "compiling-the-sphinx-documentation-locally"]], "src1d default routines": [[156, "src1d-default-routines"]], "src1d routine in GeoClaw": [[156, "src1d-routine-in-geoclaw"]], "src default routines": [[157, "src-default-routines"]], "src routine in GeoClaw": [[157, "src-routine-in-geoclaw"]], "Storm Specification Class and Tools": [[158, "storm-specification-class-and-tools"]], "Sources for Storm Surge Data": [[159, "sources-for-storm-surge-data"]], "Timing Statistics": [[161, "timing-statistics"]], "Topography data": [[162, "topography-data"]], "Downloading topography files": [[162, "downloading-topography-files"]], "NetCDF format": [[162, "netcdf-format"]], "Topography displacement files": [[162, "topography-displacement-files"]], "qinit data file": [[162, "qinit-data-file"]], "Python tools for working with topo and dtopo": [[163, "python-tools-for-working-with-topo-and-dtopo"]], "topotools module for working with topography data": [[164, "topotools-module-for-working-with-topography-data"]], "Troubleshooting Installation": [[165, "troubleshooting-installation"]], "Troubleshooting Fortran:": [[165, "troubleshooting-fortran"]], "Setting the Fortran compiler to be used by f2py (pip)": [[165, "setting-the-fortran-compiler-to-be-used-by-f2py-pip"]], "Trouble compiling Fortran code at the command line": [[165, "trouble-compiling-fortran-code-at-the-command-line"]], "Trouble running \u201cmake .exe\u201d": [[165, "trouble-running-make-exe"]], "Trouble running \u201cmake .data\u201d": [[165, "trouble-running-make-data"]], "Trouble running \u201cmake .output\u201d": [[165, "trouble-running-make-output"]], "Trouble running \u201cmake .plots\u201d": [[165, "trouble-running-make-plots"]], "Some sources of tsunami data": [[166, "some-sources-of-tsunami-data"]], "Topography / bathymetry": [[166, "topography-bathymetry"]], "Earthquake source models": [[166, "earthquake-source-models"]], "DART buoy data": [[166, "dart-buoy-data"]], "Tide gauges": [[166, "tide-gauges"]], "User files required for the Fortran code": [[167, "user-files-required-for-the-fortran-code"]], "Specifying the initial conditions": [[167, "specifying-the-initial-conditions"]], "Specifying the Riemann solver": [[167, "specifying-the-riemann-solver"]], "Specifying boundary conditions": [[167, "specifying-boundary-conditions"]], "Specifying problem-specific data": [[167, "specifying-problem-specific-data"]], "Specifying spatially-varying data using setaux": [[167, "specifying-spatially-varying-data-using-setaux"]], "Using b4step for work to be done before each time step": [[167, "using-b4step-for-work-to-be-done-before-each-time-step"]], "Using src for source terms": [[167, "using-src-for-source-terms"]], "Using src1d for source terms with AMRClaw": [[167, "using-src1d-for-source-terms-with-amrclaw"]], "Plotting with VisIt": [[168, "plotting-with-visit"]], "Clawpack Virtual Machine": [[169, "clawpack-virtual-machine"]], "Wave-propagation algorithms": [[170, "wave-propagation-algorithms"]], "One space dimension": [[170, "one-space-dimension"]], "Godunov\u2019s method": [[170, "godunov-s-method"]], "High-resolution methods": [[170, "high-resolution-methods"]], "f-wave formulation": [[170, "f-wave-formulation"]], "Capacity functions": [[170, "capacity-functions"]], "Source terms": [[170, "source-terms"]]}, "indexentries": {"clawplotaxes (built-in class)": [[0, "ClawPlotAxes"]], "gethandle()": [[0, "gethandle"], [2, "gethandle"], [3, "gethandle"]], "new_plotitem()": [[0, "new_plotitem"]], "clawplotdata (built-in class)": [[1, "ClawPlotData"]], "clearfigures()": [[1, "clearfigures"]], "clearframes()": [[1, "clearframes"]], "getaxes()": [[1, "getaxes"]], "getfigure()": [[1, "getfigure"]], "getframe()": [[1, "getframe"], [3, "getframe"]], "getitem()": [[1, "getitem"]], "iplotclaw()": [[1, "iplotclaw"]], "new_plotfigure()": [[1, "new_plotfigure"]], "plotframe()": [[1, "plotframe"]], "printframes()": [[1, "printframes"]], "showitems()": [[1, "showitems"]], "clawplotfigure (built-in class)": [[2, "ClawPlotFigure"]], "new_plotaxes()": [[2, "new_plotaxes"]], "clawplotitem (built-in class)": [[3, "ClawPlotItem"]], "csvfault (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.CSVFault"]], "dtopography (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.DTopography"]], "dtopography1d (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.DTopography1d"]], "fault (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.Fault"]], "fault1d (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.Fault1d"]], "mo() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.Mo"]], "mo() (clawpack.geoclaw.dtopotools.subfault method)": [[32, "clawpack.geoclaw.dtopotools.SubFault.Mo"]], "mw() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.Mw"]], "mw() (in module clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.Mw"]], "siftfault (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.SiftFault"]], "subfault (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.SubFault"]], "subfault1d (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.SubFault1d"]], "subdividedplanefault (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.SubdividedPlaneFault"]], "tensorproductfault (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.TensorProductFault"]], "ucsbfault (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.UCSBFault"]], "calculate_geometry() (clawpack.geoclaw.dtopotools.subfault method)": [[32, "clawpack.geoclaw.dtopotools.SubFault.calculate_geometry"]], "calculate_geometry_triangles() (clawpack.geoclaw.dtopotools.subfault method)": [[32, "clawpack.geoclaw.dtopotools.SubFault.calculate_geometry_triangles"]], "centers (clawpack.geoclaw.dtopotools.subfault property)": [[32, "clawpack.geoclaw.dtopotools.SubFault.centers"]], "clawpack.geoclaw.dtopotools": [[32, "module-clawpack.geoclaw.dtopotools"]], "containing_rect() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.containing_rect"]], "convert_to_standard_units() (clawpack.geoclaw.dtopotools.subfault method)": [[32, "clawpack.geoclaw.dtopotools.SubFault.convert_to_standard_units"]], "coordinate_specification (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.coordinate_specification"]], "coordinate_specification (clawpack.geoclaw.dtopotools.subfault1d attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault1d.coordinate_specification"]], "corners (clawpack.geoclaw.dtopotools.subfault property)": [[32, "clawpack.geoclaw.dtopotools.SubFault.corners"]], "create_dtopo_xy() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.create_dtopo_xy"]], "create_dtopography() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.create_dtopography"]], "dz_at_t() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.dZ_at_t"]], "dz_at_t() (clawpack.geoclaw.dtopotools.dtopography1d method)": [[32, "clawpack.geoclaw.dtopotools.DTopography1d.dZ_at_t"]], "dz_cellave_at_t() (clawpack.geoclaw.dtopotools.dtopography1d method)": [[32, "clawpack.geoclaw.dtopotools.DTopography1d.dZ_cellave_at_t"]], "dz_max() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.dZ_max"]], "depth (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.depth"]], "dip (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.dip"]], "dynamic_slip() (clawpack.geoclaw.dtopotools.subfault method)": [[32, "clawpack.geoclaw.dtopotools.SubFault.dynamic_slip"]], "gauss_pts (clawpack.geoclaw.dtopotools.subfault property)": [[32, "clawpack.geoclaw.dtopotools.SubFault.gauss_pts"]], "latitude (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.latitude"]], "latitude (clawpack.geoclaw.dtopotools.subfault1d attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault1d.latitude"]], "length (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.length"]], "length (clawpack.geoclaw.dtopotools.subfault1d attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault1d.length"]], "longitude (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.longitude"]], "longitude (clawpack.geoclaw.dtopotools.subfault1d attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault1d.longitude"]], "module": [[32, "module-clawpack.geoclaw.dtopotools"], [35, "module-clawpack.geoclaw.fgmax_tools"], [37, "module-clawpack.geoclaw.fgout_tools"], [51, "module-clawpack.geoclaw.util"], [63, "module-clawpack.geoclaw.kmltools"], [92, "module-clawpack.pyclaw.limiters.tvd"], [97, "module-clawpack.pyclaw.fileio.ascii"], [97, "module-clawpack.pyclaw.fileio.binary"], [97, "module-clawpack.pyclaw.fileio.hdf5"], [97, "module-clawpack.pyclaw.fileio.netcdf"], [102, "module-clawpack.riemann.acoustics_1D_py"], [102, "module-clawpack.riemann.advection_1D_py"], [102, "module-clawpack.riemann.burgers_1D_py"], [102, "module-clawpack.riemann.euler_1D_py"], [102, "module-clawpack.riemann.shallow_1D_py"], [109, "module-clawpack.pyclaw.util"], [158, "module-clawpack.geoclaw.surge.storm"], [164, "module-clawpack.geoclaw.topotools"]], "mu (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.mu"]], "okada() (clawpack.geoclaw.dtopotools.subfault method)": [[32, "clawpack.geoclaw.dtopotools.SubFault.okada"]], "plot_dz_colors() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.plot_dZ_colors"]], "plot_dz_colors() (in module clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.plot_dZ_colors"]], "plot_dz_contours() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.plot_dZ_contours"]], "plot_dz_contours() (in module clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.plot_dZ_contours"]], "plot_subfaults() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.plot_subfaults"]], "plot_subfaults_depth() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.plot_subfaults_depth"]], "rake (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rake"]], "rake (clawpack.geoclaw.dtopotools.subfault1d attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault1d.rake"]], "read() (clawpack.geoclaw.dtopotools.csvfault method)": [[32, "clawpack.geoclaw.dtopotools.CSVFault.read"]], "read() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.read"]], "read() (clawpack.geoclaw.dtopotools.dtopography1d method)": [[32, "clawpack.geoclaw.dtopotools.DTopography1d.read"]], "read() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.read"]], "read() (clawpack.geoclaw.dtopotools.ucsbfault method)": [[32, "clawpack.geoclaw.dtopotools.UCSBFault.read"]], "rise_fraction() (in module clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.rise_fraction"]], "rise_shape (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rise_shape"]], "rise_time (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rise_time"]], "rise_time_starting (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rise_time_starting"]], "rupture_time (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rupture_time"]], "rupture_type (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rupture_type"]], "set_corners() (clawpack.geoclaw.dtopotools.subfault method)": [[32, "clawpack.geoclaw.dtopotools.SubFault.set_corners"]], "set_dynamic_slip() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.set_dynamic_slip"]], "set_subfaults() (clawpack.geoclaw.dtopotools.siftfault method)": [[32, "clawpack.geoclaw.dtopotools.SiftFault.set_subfaults"]], "slip (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.slip"]], "strike (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.strike"]], "strike (clawpack.geoclaw.dtopotools.subfault1d attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault1d.strike"]], "strike_direction() (in module clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.strike_direction"]], "subdivide() (clawpack.geoclaw.dtopotools.subdividedplanefault method)": [[32, "clawpack.geoclaw.dtopotools.SubdividedPlaneFault.subdivide"]], "width (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.width"]], "write() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.write"]], "write() (clawpack.geoclaw.dtopotools.dtopography1d method)": [[32, "clawpack.geoclaw.dtopotools.DTopography1d.write"]], "write() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.write"]], "fgmaxgrid (class in clawpack.geoclaw.fgmax_tools)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid"]], 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(clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.B"]], "fgoutframe (class in clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame"]], "fgoutgrid (class in clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid"]], "x (clawpack.geoclaw.fgout_tools.fgoutgrid property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.X"], [37, "clawpack.geoclaw.fgout_tools.FGoutGrid.x"]], "y (clawpack.geoclaw.fgout_tools.fgoutgrid property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.Y"], [37, "clawpack.geoclaw.fgout_tools.FGoutGrid.y"]], "clawpack.geoclaw.fgout_tools": [[37, "module-clawpack.geoclaw.fgout_tools"]], "eta (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.eta"]], "extent_centers (clawpack.geoclaw.fgout_tools.fgoutgrid property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.extent_centers"]], "extent_edges (clawpack.geoclaw.fgout_tools.fgoutgrid property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.extent_edges"]], "get_as_array() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.get_as_array"]], "h (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.h"]], "hss (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.hss"]], "hu (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.hu"]], "hv (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.hv"]], "make_fgout_fcn_xy() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.make_fgout_fcn_xy"]], "make_fgout_fcn_xyt() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.make_fgout_fcn_xyt"]], "print_netcdf_info() (in module clawpack.geoclaw.fgout_tools)": [[37, 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"clawpack.geoclaw.fgout_tools.FGoutFrame.v"]], "write_netcdf() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.write_netcdf"]], "write_to_fgout_data() (clawpack.geoclaw.fgout_tools.fgoutgrid method)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.write_to_fgout_data"]], "bearing() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.bearing"]], "clawpack.geoclaw.util": [[51, "module-clawpack.geoclaw.util"]], "dist_latlong2meters() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.dist_latlong2meters"]], "dist_meters2latlong() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.dist_meters2latlong"]], "dms2decimal() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.dms2decimal"]], "fetch_noaa_tide_data() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.fetch_noaa_tide_data"]], "gctransect() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.gctransect"]], "haversine() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.haversine"]], "inv_haversine() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.inv_haversine"]], "box2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.box2kml"]], "clawpack.geoclaw.kmltools": [[63, "module-clawpack.geoclaw.kmltools"]], "deg2dms() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.deg2dms"]], "dtopo2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.dtopo2kml"]], "f2s() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.f2s"]], "fgmax2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.fgmax2kml"]], "fgout2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.fgout2kml"]], "gauges2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.gauges2kml"]], "kml_build_colorbar() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.kml_build_colorbar"]], "kml_cb() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.kml_cb"]], "kml_png() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.kml_png"]], "kml_timespan() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.kml_timespan"]], "line2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.line2kml"]], "make_input_data_kmls() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.make_input_data_kmls"]], "pcolorcells_for_kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.pcolorcells_for_kml"]], "png2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.png2kml"]], "poly2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.poly2kml"]], "quad2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.quad2kml"]], "regions2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.regions2kml"]], "topo2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.topo2kml"]], "topo2kmz() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.topo2kmz"]], "transect2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.transect2kml"]], "controller (class in clawpack.pyclaw.controller)": [[91, "clawpack.pyclaw.controller.Controller"]], "f_file_name (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.F_file_name"]], "f_path (clawpack.pyclaw.controller.controller property)": [[91, "clawpack.pyclaw.controller.Controller.F_path"]], "check_validity() (clawpack.pyclaw.controller.controller method)": [[91, "clawpack.pyclaw.controller.Controller.check_validity"]], "compute_f (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.compute_F"]], "compute_p (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.compute_p"]], "file_prefix_p (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.file_prefix_p"]], "frames (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.frames"]], "keep_copy (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.keep_copy"]], "nstepout (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.nstepout"]], "num_output_times (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.num_output_times"]], "out_times (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.out_times"]], "outdir (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.outdir"]], "outdir_p (clawpack.pyclaw.controller.controller property)": [[91, "clawpack.pyclaw.controller.Controller.outdir_p"]], "output_file_prefix (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.output_file_prefix"]], "output_format (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.output_format"]], "output_options (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.output_options"]], "output_style (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.output_style"]], "overwrite (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.overwrite"]], "plot() (clawpack.pyclaw.controller.controller method)": [[91, "clawpack.pyclaw.controller.Controller.plot"]], "plotdata (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.plotdata"]], "run() (clawpack.pyclaw.controller.controller method)": [[91, "clawpack.pyclaw.controller.Controller.run"]], "rundir (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.rundir"]], "runmake (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.runmake"]], "savecode (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.savecode"]], "solver (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.solver"]], "tfinal (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.tfinal"]], "verbosity (clawpack.pyclaw.controller.controller property)": [[91, "clawpack.pyclaw.controller.Controller.verbosity"]], "viewable_attributes (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.viewable_attributes"]], "write_aux_always (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.write_aux_always"]], "write_aux_init (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.write_aux_init"]], "xclawcmd (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.xclawcmd"]], "xclawerr (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.xclawerr"]], "xclawout (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.xclawout"]], "xdir (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.xdir"]], "arora_roe() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.arora_roe"]], "beta_limiter() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.beta_limiter"]], "cada_torrilhon_limiter() (in module 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clawpack.pyclaw.geometry)": [[94, "clawpack.pyclaw.geometry.Grid"]], "patch (class in clawpack.petclaw.geometry)": [[94, "clawpack.petclaw.geometry.Patch"]], "patch (class in clawpack.pyclaw.geometry)": [[94, "clawpack.pyclaw.geometry.Patch"]], "add_dimension() (clawpack.pyclaw.geometry.grid method)": [[94, "clawpack.pyclaw.geometry.Grid.add_dimension"]], "add_dimension() (clawpack.pyclaw.geometry.patch method)": [[94, "clawpack.pyclaw.geometry.Patch.add_dimension"]], "add_gauges() (clawpack.pyclaw.geometry.grid method)": [[94, "clawpack.pyclaw.geometry.Grid.add_gauges"]], "c_center() (clawpack.pyclaw.geometry.grid method)": [[94, "clawpack.pyclaw.geometry.Grid.c_center"]], "c_centers (clawpack.pyclaw.geometry.grid property)": [[94, "clawpack.pyclaw.geometry.Grid.c_centers"]], "c_centers_with_ghost() (clawpack.pyclaw.geometry.grid method)": [[94, "clawpack.pyclaw.geometry.Grid.c_centers_with_ghost"]], "c_nodes (clawpack.pyclaw.geometry.grid property)": [[94, 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attribute)": [[94, "clawpack.petclaw.geometry.Domain.fwave"]], "gauge_dir_name (clawpack.pyclaw.geometry.grid attribute)": [[94, "clawpack.pyclaw.geometry.Grid.gauge_dir_name"]], "gauge_file_names (clawpack.pyclaw.geometry.grid attribute)": [[94, "clawpack.pyclaw.geometry.Grid.gauge_file_names"]], "gauge_files (clawpack.pyclaw.geometry.grid attribute)": [[94, "clawpack.pyclaw.geometry.Grid.gauge_files"]], "gauges (clawpack.pyclaw.geometry.grid attribute)": [[94, "clawpack.pyclaw.geometry.Grid.gauges"]], "get_dim_attribute() (clawpack.pyclaw.geometry.grid method)": [[94, "clawpack.pyclaw.geometry.Grid.get_dim_attribute"]], "get_dim_attribute() (clawpack.pyclaw.geometry.patch method)": [[94, "clawpack.pyclaw.geometry.Patch.get_dim_attribute"]], "grid (clawpack.pyclaw.geometry.domain property)": [[94, "clawpack.pyclaw.geometry.Domain.grid"]], "kernel_language (clawpack.petclaw.geometry.domain attribute)": [[94, "clawpack.petclaw.geometry.Domain.kernel_language"]], "level (clawpack.pyclaw.geometry.patch attribute)": [[94, "clawpack.pyclaw.geometry.Patch.level"]], "lower_global (clawpack.pyclaw.geometry.patch property)": [[94, "clawpack.pyclaw.geometry.Patch.lower_global"]], "mthlim (clawpack.petclaw.geometry.domain attribute)": [[94, "clawpack.petclaw.geometry.Domain.mthlim"]], "name (clawpack.pyclaw.geometry.patch property)": [[94, "clawpack.pyclaw.geometry.Patch.name"]], "nodes (clawpack.pyclaw.geometry.dimension property)": [[94, "clawpack.pyclaw.geometry.Dimension.nodes"]], "nodes_with_ghost() (clawpack.pyclaw.geometry.dimension method)": [[94, "clawpack.pyclaw.geometry.Dimension.nodes_with_ghost"]], "num_cells_global (clawpack.pyclaw.geometry.patch property)": [[94, "clawpack.pyclaw.geometry.Patch.num_cells_global"]], "num_dim (clawpack.pyclaw.geometry.domain property)": [[94, "clawpack.pyclaw.geometry.Domain.num_dim"]], "num_dim (clawpack.pyclaw.geometry.grid property)": [[94, "clawpack.pyclaw.geometry.Grid.num_dim"]], "num_dim (clawpack.pyclaw.geometry.patch property)": [[94, "clawpack.pyclaw.geometry.Patch.num_dim"]], "order (clawpack.petclaw.geometry.domain attribute)": [[94, "clawpack.petclaw.geometry.Domain.order"]], "p_center() (clawpack.pyclaw.geometry.grid method)": [[94, "clawpack.pyclaw.geometry.Grid.p_center"]], "p_centers (clawpack.pyclaw.geometry.grid property)": [[94, "clawpack.pyclaw.geometry.Grid.p_centers"]], "p_nodes (clawpack.pyclaw.geometry.grid property)": [[94, "clawpack.pyclaw.geometry.Grid.p_nodes"]], "patch (clawpack.pyclaw.geometry.domain property)": [[94, "clawpack.pyclaw.geometry.Domain.patch"]], "patch_index (clawpack.pyclaw.geometry.patch attribute)": [[94, "clawpack.pyclaw.geometry.Patch.patch_index"]], "plot() (clawpack.pyclaw.geometry.grid method)": [[94, "clawpack.pyclaw.geometry.Grid.plot"]], "setup_gauge_files() (clawpack.pyclaw.geometry.grid method)": [[94, "clawpack.pyclaw.geometry.Grid.setup_gauge_files"]], "source_split (clawpack.petclaw.geometry.domain attribute)": [[94, "clawpack.petclaw.geometry.Domain.source_split"]], "step_source (clawpack.petclaw.geometry.domain attribute)": [[94, "clawpack.petclaw.geometry.Domain.step_source"]], "transverse_waves (clawpack.petclaw.geometry.domain attribute)": [[94, "clawpack.petclaw.geometry.Domain.transverse_waves"]], "upper_global (clawpack.pyclaw.geometry.patch property)": [[94, "clawpack.pyclaw.geometry.Patch.upper_global"]], "verbosity (clawpack.petclaw.geometry.domain attribute)": [[94, "clawpack.petclaw.geometry.Domain.verbosity"]], "clawpack.pyclaw.fileio.ascii": [[97, "module-clawpack.pyclaw.fileio.ascii"]], "clawpack.pyclaw.fileio.binary": [[97, "module-clawpack.pyclaw.fileio.binary"]], "clawpack.pyclaw.fileio.hdf5": [[97, "module-clawpack.pyclaw.fileio.hdf5"]], "clawpack.pyclaw.fileio.netcdf": [[97, "module-clawpack.pyclaw.fileio.netcdf"]], "read() (in module clawpack.pyclaw.fileio.ascii)": [[97, "clawpack.pyclaw.fileio.ascii.read"]], "read() (in module clawpack.pyclaw.fileio.binary)": [[97, 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4, 6, 17, 30, 47, 51, 56, 58, 70, 71, 74, 82, 88, 92, 99, 101, 118, 140, 142, 147, 164, 170], "ff0000": [3, 63], "No": [3, 43, 55, 59, 71, 94, 104, 133, 140, 148, 151, 165], "extra": [3, 55, 141], "give": [3, 6, 9, 10, 13, 16, 17, 18, 19, 26, 30, 32, 34, 35, 36, 38, 39, 47, 49, 56, 63, 64, 70, 72, 75, 76, 77, 82, 84, 99, 100, 104, 116, 120, 124, 125, 129, 132, 142, 148, 151, 162, 164, 166], "polygon": [3, 7, 41, 55, 63, 130, 164], "curv": [3, 47, 81, 142], "fill_between": 3, "plot_var2": 3, "zero": [3, 16, 32, 34, 42, 44, 47, 63, 71, 72, 88, 101, 102, 106, 108, 132, 142, 143], "fill_wher": 3, "plotitem": [3, 29, 47, 82, 147], "mean": [3, 13, 24, 30, 34, 42, 47, 52, 56, 62, 71, 72, 98, 99, 115, 118, 140, 143, 148, 150, 152, 166], "map_2d_to_1d": 3, "In": [3, 5, 6, 8, 11, 12, 15, 16, 18, 19, 21, 22, 24, 29, 32, 34, 36, 41, 44, 47, 48, 49, 52, 55, 56, 57, 58, 59, 62, 63, 64, 66, 67, 70, 71, 72, 74, 75, 77, 78, 82, 83, 84, 88, 89, 94, 96, 97, 98, 99, 100, 101, 102, 104, 106, 109, 111, 112, 113, 115, 118, 119, 120, 123, 124, 125, 127, 128, 132, 136, 139, 140, 142, 144, 145, 146, 148, 149, 151, 156, 157, 162, 164, 165, 167, 170], "about": [3, 5, 7, 13, 14, 16, 18, 19, 24, 27, 35, 36, 37, 38, 39, 43, 49, 51, 52, 57, 59, 63, 66, 68, 71, 77, 83, 85, 88, 96, 97, 99, 104, 111, 116, 124, 128, 130, 135, 136, 140, 147, 149, 150, 151, 162, 165, 167, 170], "j": [3, 4, 5, 15, 17, 22, 24, 29, 35, 42, 56, 63, 70, 71, 77, 84, 96, 97, 115, 119, 120, 144, 145], "v": [3, 16, 27, 31, 32, 34, 36, 37, 51, 64, 67, 116, 124, 149, 162], "radiu": [3, 151, 158, 159, 164], "q0_vs_radiu": 3, "convert": [3, 24, 27, 32, 35, 37, 45, 51, 55, 62, 63, 66, 75, 78, 89, 96, 101, 109, 110, 127, 130, 136, 137, 148, 149, 158, 162, 166], "numpi": [3, 13, 32, 34, 36, 37, 42, 51, 70, 85, 87, 88, 89, 91, 94, 101, 106, 107, 108, 110, 116, 137, 141, 142, 150, 164, 165], "sqrt": [3, 34, 37, 49, 68, 88, 101, 102, 108, 150], "q0": [3, 101], "work": [3, 5, 8, 13, 16, 19, 21, 22, 24, 26, 27, 28, 30, 31, 34, 36, 38, 39, 43, 48, 52, 55, 56, 57, 58, 59, 60, 61, 62, 63, 70, 71, 74, 75, 76, 82, 85, 86, 87, 88, 90, 91, 92, 96, 97, 98, 99, 102, 104, 105, 110, 111, 113, 114, 115, 116, 118, 121, 122, 123, 124, 125, 126, 127, 130, 132, 133, 138, 140, 146, 147, 148, 149, 153, 159, 162, 165, 169], "symbol": [3, 71, 111], "best": [3, 4, 16, 24, 28, 30, 36, 44, 49, 55, 57, 59, 60, 66, 72, 74, 76, 81, 82, 97, 101, 113, 114, 115, 116, 127, 138, 140, 151, 155, 158, 162, 167], "descript": [3, 4, 6, 9, 24, 25, 27, 32, 36, 37, 63, 71, 75, 78, 81, 96, 97, 109, 113, 115, 137, 140, 141, 151, 158, 162, 170], "celledges_show": [3, 24], "draw": 3, "amr_celledges_show": 3, "level": [3, 6, 7, 16, 19, 25, 29, 31, 34, 36, 41, 42, 47, 48, 50, 51, 52, 55, 58, 59, 61, 62, 71, 72, 76, 77, 89, 91, 94, 96, 97, 98, 104, 111, 112, 115, 116, 119, 120, 124, 125, 127, 130, 139, 142, 143, 146, 148, 149, 150, 152, 161, 162, 164, 166, 167], "patchedges_show": [3, 24], "mostli": [3, 81, 96, 130, 137], "contour_level": [3, 164], "three": [3, 13, 17, 24, 32, 34, 37, 52, 55, 67, 71, 75, 99, 103, 109, 116, 142, 148, 151, 162, 164, 167], "contour_nlevel": 3, "contour_min": 3, "minimum": [3, 19, 34, 47, 55, 75, 108, 125, 151, 164], "contour_max": 3, "maximum": [3, 24, 32, 34, 35, 36, 48, 71, 72, 104, 108, 115, 119, 120, 127, 130, 148, 149, 150, 152, 158, 159], "contour_color": 3, "specif": [3, 5, 12, 19, 24, 30, 32, 47, 48, 49, 51, 55, 56, 62, 65, 67, 68, 77, 86, 87, 89, 91, 96, 97, 98, 102, 103, 109, 113, 125, 126, 127, 130, 147, 148, 149, 150, 152, 159, 162], "b": [3, 5, 17, 30, 32, 34, 35, 36, 37, 42, 47, 49, 56, 58, 59, 68, 72, 82, 104, 115, 123, 130, 142, 143, 144, 151, 164, 166], "0000ff": [3, 63], "colormap": [3, 32, 42, 50, 55, 70, 71, 81, 83, 124, 130, 164], "amr_contour_color": 3, "As": [3, 18, 19, 39, 42, 48, 49, 52, 58, 59, 63, 64, 88, 108, 110, 114, 118, 119, 130, 140, 141, 144, 151, 154, 160, 167], "black": [3, 47], "subsequ": [3, 10, 71], "both": [3, 16, 18, 19, 30, 32, 35, 36, 37, 38, 39, 41, 42, 47, 52, 57, 60, 62, 67, 70, 71, 75, 77, 89, 97, 98, 99, 104, 105, 115, 116, 123, 124, 127, 130, 135, 140, 141, 142, 144, 148, 149, 150, 152, 156, 162, 167], "fine": [3, 19, 34, 35, 36, 42, 49, 58, 74, 78, 96, 101, 115, 118, 125, 132, 142, 144, 148, 149, 151, 162, 167], "coars": [3, 34, 36, 55, 115, 118, 125, 132, 148, 162, 167], "anoth": [3, 19, 24, 34, 36, 42, 47, 51, 55, 62, 63, 77, 81, 85, 93, 104, 107, 116, 127, 158, 167], "refin": [3, 4, 5, 7, 8, 17, 19, 24, 36, 48, 49, 52, 55, 56, 57, 70, 71, 77, 78, 88, 125, 127, 128, 130, 132, 142, 144, 147, 148, 149, 150, 161, 162, 167], "region": [3, 6, 7, 13, 16, 19, 24, 34, 36, 41, 42, 48, 52, 53, 55, 63, 68, 72, 75, 78, 113, 118, 127, 130, 132, 143, 144, 149, 150, 154, 162, 164], "lack": 3, "hidden": [3, 66, 82], "blank": [3, 35, 63, 158], "coarser": [3, 16, 19, 57, 125, 144, 148, 149, 167], "easili": [3, 13, 30, 34, 55, 58, 71, 82, 89, 94, 105, 109, 116, 118, 130, 153], "contour_show": 3, "commonli": [3, 19, 71, 82, 84], "amr_contour_show": 3, "determin": [3, 5, 6, 32, 34, 37, 42, 47, 48, 49, 52, 54, 55, 58, 63, 72, 75, 82, 92, 94, 97, 102, 106, 111, 115, 120, 124, 125, 139, 142, 143, 147, 148, 149, 151, 164, 167], "whether": [3, 6, 13, 16, 24, 51, 57, 60, 62, 64, 65, 66, 71, 86, 94, 97, 98, 102, 103, 104, 115, 116, 125, 140, 142, 148, 149, 151, 164], "view": [3, 4, 24, 36, 38, 39, 47, 48, 49, 51, 55, 57, 58, 63, 77, 81, 83, 84, 88, 99, 105, 110, 123, 127, 153, 155], "finest": [3, 19, 34, 36, 42, 47, 72, 127, 161, 164], "contour_kwarg": [3, 164], "pcolor_cmap": [3, 55], "pcolor_cmin": 3, "pcolor_cmax": 3, "thei": [3, 5, 6, 13, 16, 18, 19, 26, 29, 30, 32, 34, 36, 41, 42, 45, 47, 49, 52, 55, 58, 59, 62, 63, 64, 67, 70, 71, 77, 81, 94, 96, 101, 104, 109, 115, 116, 125, 132, 144, 147, 151, 154, 158, 162, 164, 167], "chosen": [3, 31, 34, 41, 42, 49, 55, 57, 70, 108, 115, 132, 143, 149], "vari": [3, 15, 17, 27, 32, 42, 48, 49, 57, 68, 72, 101, 103, 123, 130, 140, 141, 143, 145, 149, 151, 170], "yield": [3, 18, 19], "veri": [3, 5, 16, 17, 18, 19, 24, 49, 52, 55, 59, 60, 63, 75, 82, 86, 89, 97, 98, 99, 100, 101, 104, 116, 118, 120, 124, 135, 142, 144, 148, 159, 162], "confus": [3, 57, 62, 111, 132, 140], "add_colorbar": [3, 32, 164], "ad": [3, 12, 16, 22, 24, 26, 27, 29, 31, 34, 36, 37, 44, 47, 51, 57, 58, 59, 62, 63, 64, 68, 71, 72, 75, 82, 87, 89, 92, 94, 95, 98, 99, 111, 112, 113, 115, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 133, 135, 136, 137, 139, 144, 148, 149, 151, 154, 158, 161, 164, 168], "imshow_cmap": 3, "imshow_cmin": 3, "imshow_cmax": 3, "hillshade_vertical_exagger": 3, "vertic": [3, 32, 41, 52, 55, 63, 70, 142, 143, 151, 164, 166], "exagger": 3, "calul": 3, "hillshade_azimuth_degre": 3, "light": [3, 55, 71, 115], "sourc": [3, 4, 17, 18, 19, 25, 27, 30, 32, 44, 48, 49, 55, 56, 58, 59, 61, 62, 63, 65, 67, 68, 81, 86, 89, 93, 94, 95, 104, 105, 107, 108, 109, 113, 114, 116, 118, 125, 126, 127, 136, 137, 141, 143, 148, 150, 151, 152, 155, 156, 157, 158, 162], "azimuth": 3, "angl": [3, 16, 32, 51, 75], "315": 3, "northwest": 3, "360": [3, 51, 55, 75], "degre": [3, 32, 49, 51, 55, 63, 72, 75], "clockwis": [3, 34, 51, 75, 164], "north": [3, 34, 42, 49, 51, 70, 75], "recommend": [3, 4, 18, 19, 32, 34, 36, 38, 39, 58, 59, 60, 62, 76, 81, 90, 94, 96, 97, 99, 100, 104, 105, 107, 108, 115, 127, 135, 137, 148, 150, 152, 168], "proper": [3, 6, 15, 42, 47, 56, 57, 58, 59, 63, 68, 70, 71, 97, 109, 119, 125, 145, 149, 150, 156, 157, 158, 167], "interpret": [3, 32, 57, 75, 97, 127, 162], "peopl": [3, 4, 12, 13, 86], "hillshade_altitude_degre": 3, "altitud": 3, "horizon": 3, "45": [3, 104], "90": [3, 27, 32, 49, 55, 67, 75, 105, 107, 136], "hillshade_latlon": 3, "correct": [3, 18, 19, 22, 30, 44, 58, 59, 67, 68, 71, 82, 88, 94, 97, 99, 103, 109, 119, 120, 124, 144, 148, 150, 151, 152], "unit": [3, 32, 49, 50, 51, 56, 75, 94, 125, 136, 158], "z": [3, 42, 57, 63, 70, 71, 88, 94, 102, 108, 142, 148, 149, 162, 164], "111200": 3, "reflect": [3, 4, 5, 16, 30, 115, 127, 148, 150, 152], "relat": [3, 7, 19, 24, 26, 58, 78, 102, 113, 126, 130, 132, 143], "pre": [3, 13, 35, 59, 90, 97], "pend": 3, "amr_": [3, 7], "whose": [3, 49, 82, 89, 101, 102, 144, 148, 149, 164], "origin": [3, 6, 13, 16, 18, 19, 22, 30, 32, 36, 37, 45, 47, 56, 58, 63, 70, 76, 77, 89, 104, 109, 119, 125, 132, 139, 149, 150, 151, 152, 164], "hand": [3, 5, 19, 20, 21, 22, 68, 88, 116, 118, 135, 136, 137, 142], "higher": [3, 6, 18, 19, 55, 94, 104, 105, 115, 130, 140, 142, 143, 144], "shorter": [3, 115, 164], "last": [3, 20, 29, 34, 36, 59, 61, 82, 88, 89, 101, 108, 118, 124, 135, 136, 137, 148, 158], "repeatedli": [3, 99, 105, 149], "finer": [3, 7, 19, 34, 55, 115, 119, 120, 142, 148, 149], "celledg": [3, 32, 49], "colorbar_shrink": [3, 32], "colorbar_label": 3, "colorbar_tick": 3, "colorbar_tick_label": 3, "colorbar_extend": [3, 136], "colorbar_kwarg": [3, 127], "stand": [4, 132], "conserv": [4, 5, 6, 17, 18, 19, 98, 104, 106, 128, 141, 167, 170], "law": [4, 17, 63, 151, 170], "packag": [4, 27, 30, 31, 38, 39, 55, 59, 60, 67, 77, 78, 81, 85, 86, 88, 94, 96, 98, 100, 101, 103, 105, 108, 110, 111, 118, 129, 130, 165, 168], "wa": [4, 5, 6, 14, 19, 21, 22, 27, 31, 32, 34, 35, 36, 37, 42, 49, 52, 54, 58, 59, 66, 68, 70, 71, 75, 82, 99, 103, 104, 106, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 139, 142, 144, 161, 162, 164], "initi": [4, 5, 7, 12, 13, 18, 19, 24, 27, 32, 36, 37, 47, 48, 49, 51, 52, 55, 59, 64, 67, 71, 72, 75, 77, 78, 84, 86, 87, 88, 89, 91, 92, 94, 95, 97, 98, 102, 103, 104, 106, 107, 109, 112, 115, 124, 127, 130, 132, 140, 143, 148, 149, 150, 152, 154, 158, 162, 164], "develop": [4, 6, 7, 12, 13, 19, 20, 24, 25, 45, 52, 56, 58, 61, 62, 65, 70, 71, 81, 85, 86, 89, 96, 101, 104, 105, 111, 113, 116, 118, 127, 128, 130, 132, 135, 136, 137, 140, 143, 144, 150], "linear": [4, 5, 17, 18, 19, 32, 36, 37, 47, 49, 55, 72, 75, 82, 88, 92, 104, 118, 128, 140, 141, 142], "nonlinear": [4, 5, 17, 52, 92, 140, 148, 170], "hyperbol": [4, 5, 6, 17, 18, 19, 45, 78, 89, 96, 101, 102, 108, 140, 148, 151, 167, 170], "system": [4, 16, 17, 18, 19, 25, 39, 40, 48, 55, 56, 62, 63, 67, 76, 77, 86, 96, 97, 98, 99, 101, 102, 105, 108, 111, 116, 118, 140, 148, 150, 152, 160, 167, 170], "focu": [4, 48], "high": [4, 17, 34, 52, 55, 70, 72, 75, 78, 89, 96, 104, 140, 143, 144, 166, 167], "resolut": [4, 6, 17, 32, 34, 36, 42, 47, 64, 72, 75, 94, 104, 108, 109, 119, 123, 127, 128, 135, 140, 143, 162, 164, 166, 167], "godunov": [4, 94, 104, 148, 150, 152, 167], "method": [4, 5, 7, 17, 19, 34, 36, 37, 41, 45, 47, 57, 70, 72, 82, 84, 88, 91, 92, 94, 99, 103, 104, 109, 115, 116, 123, 140, 147, 148, 149, 150, 152, 158, 161, 162, 164, 167], "framework": [4, 86, 89, 124, 125], "applic": [4, 6, 15, 16, 18, 19, 21, 22, 24, 25, 26, 30, 31, 36, 37, 38, 39, 40, 44, 45, 46, 47, 48, 50, 59, 61, 62, 67, 70, 76, 77, 84, 93, 94, 95, 96, 98, 104, 109, 112, 114, 115, 116, 118, 119, 122, 123, 125, 126, 127, 129, 130, 140, 142, 144, 145, 148, 151, 156, 157, 162, 164, 165, 167, 168], "finit": [4, 17, 34, 36, 45, 49, 57, 63, 70, 71, 72, 75, 104, 130, 142, 151, 161, 162, 167], "volum": [4, 17, 31, 34, 36, 45, 49, 57, 63, 70, 71, 72, 96, 130, 142, 149, 151, 161, 162, 167], "riemann": [4, 5, 8, 22, 24, 25, 30, 31, 48, 59, 62, 67, 78, 86, 88, 94, 95, 104, 105, 106, 108, 111, 146, 148, 150, 152, 156, 157, 170], "solver": [4, 5, 6, 22, 24, 25, 27, 30, 48, 49, 60, 61, 62, 67, 85, 86, 87, 91, 94, 95, 98, 106, 118, 121, 123, 125, 126, 127, 128, 129, 130, 132, 137, 148, 150, 152, 156, 157, 170], "resolv": [4, 34, 36, 55, 58, 62, 113, 127, 144], "jump": [4, 5, 71, 84, 94, 104, 125, 148, 170], "discontinu": [4, 104, 170], "interfac": [4, 21, 24, 71, 86, 89, 92, 96, 97, 102, 104, 109, 140, 167, 168, 170], "wave": [4, 5, 6, 16, 17, 18, 27, 34, 42, 48, 49, 52, 55, 56, 75, 92, 94, 96, 101, 102, 104, 115, 123, 125, 126, 132, 141, 142, 143, 148, 149, 150, 151, 152, 154, 167], "propag": [4, 5, 6, 17, 18, 19, 27, 32, 49, 52, 55, 56, 75, 94, 96, 104, 115, 125, 140], "neighbor": [4, 18, 19, 36, 42, 70, 72, 115, 125, 144, 149, 150, 164], "formul": [4, 5, 19, 52, 68, 140, 148], "allow": [4, 6, 13, 24, 29, 30, 31, 34, 36, 37, 41, 42, 47, 48, 51, 54, 55, 57, 58, 62, 68, 70, 71, 75, 76, 78, 81, 82, 91, 96, 97, 98, 104, 106, 109, 110, 111, 115, 116, 119, 120, 123, 124, 125, 126, 127, 129, 130, 132, 135, 136, 137, 140, 142, 148, 150, 151, 152, 153, 158, 162, 164, 166], "easi": [4, 6, 11, 31, 41, 62, 71, 89, 98, 99, 100, 142, 153, 167], "extens": [4, 17, 19, 24, 26, 30, 32, 52, 55, 58, 62, 67, 71, 89, 96, 97, 109, 125, 126, 132, 148, 160, 164, 170], "problem": [4, 5, 7, 16, 17, 18, 19, 22, 26, 27, 29, 30, 31, 38, 39, 42, 45, 48, 49, 62, 66, 70, 71, 72, 75, 78, 82, 85, 87, 88, 93, 95, 96, 99, 102, 104, 107, 111, 116, 119, 120, 122, 123, 126, 130, 132, 136, 137, 140, 142, 144, 148, 149, 150, 151, 152, 153, 154, 161, 165], "algorithm": [4, 7, 19, 27, 34, 41, 42, 48, 56, 88, 94, 96, 97, 104, 108, 115, 127, 140, 142, 148, 150, 152, 164], "brief": [4, 59, 141, 151], "subroutin": [4, 6, 9, 16, 24, 34, 36, 67, 115, 123, 140, 148, 149, 161, 167, 170], "equat": [4, 5, 16, 17, 18, 27, 38, 39, 48, 49, 52, 64, 68, 82, 87, 88, 89, 91, 96, 97, 98, 101, 104, 105, 106, 118, 120, 123, 125, 127, 128, 140, 148, 150, 151, 152, 154, 162, 167, 170], "solv": [4, 5, 8, 16, 17, 18, 19, 22, 28, 38, 39, 49, 52, 60, 62, 64, 87, 89, 91, 94, 96, 101, 102, 105, 118, 128, 140, 141, 148, 162, 167, 170], "adapt": [4, 7, 17, 19, 32, 42, 49, 56, 57, 70, 71, 78, 88, 115, 127, 130, 132, 140, 142, 147, 148, 149, 151, 167], "mesh": [4, 7, 17, 19, 35, 49, 56, 70, 71, 78, 81, 88, 115, 130, 147, 148, 167], "amrclaw": [4, 5, 6, 12, 15, 16, 19, 21, 22, 24, 25, 26, 30, 38, 39, 41, 42, 44, 46, 47, 48, 50, 56, 59, 60, 61, 62, 64, 70, 71, 76, 77, 78, 85, 96, 97, 105, 111, 112, 115, 116, 139, 140, 142, 145, 146, 148, 151, 156, 157, 160, 161, 165], "detail": [4, 5, 10, 16, 24, 25, 27, 28, 30, 31, 32, 34, 36, 38, 39, 41, 44, 47, 50, 52, 55, 58, 61, 62, 64, 65, 66, 70, 71, 75, 78, 82, 86, 91, 92, 93, 94, 96, 97, 98, 99, 100, 101, 102, 104, 114, 115, 116, 120, 125, 127, 132, 135, 140, 142, 147, 148, 151, 153, 158, 162, 165, 166, 167, 170], "content": [4, 6, 25, 37, 45, 55, 59, 77, 78, 89, 96, 151, 162, 167, 168], "routin": [4, 5, 6, 16, 18, 19, 22, 27, 29, 32, 34, 38, 39, 47, 48, 49, 50, 55, 56, 66, 71, 72, 76, 77, 78, 81, 84, 86, 89, 91, 94, 97, 100, 101, 104, 106, 107, 115, 118, 119, 120, 123, 125, 127, 128, 130, 140, 144, 148, 150, 152, 158, 164, 165, 167, 168, 170], "special": [4, 7, 16, 48, 50, 55, 65, 78, 86, 97, 115, 135, 142, 164], "depth": [4, 5, 16, 17, 18, 19, 24, 32, 34, 35, 37, 42, 47, 48, 49, 52, 68, 72, 75, 81, 83, 141, 143, 144, 151, 162], "averag": [4, 6, 15, 17, 18, 19, 34, 42, 48, 49, 52, 53, 57, 71, 72, 102, 106, 120, 132, 140, 144, 145, 162, 164, 167], "geophys": [4, 16, 17, 25, 48, 52, 78, 148], "flow": [4, 16, 17, 25, 34, 35, 48, 50, 52, 78, 96, 113, 118, 130, 135, 140, 148, 151, 162, 167], "geoclaw": [4, 7, 12, 17, 18, 19, 25, 26, 30, 31, 32, 34, 35, 36, 37, 39, 41, 44, 46, 47, 56, 57, 59, 60, 61, 62, 63, 64, 68, 70, 72, 75, 77, 78, 81, 85, 96, 105, 111, 113, 114, 116, 139, 140, 141, 143, 144, 146, 148, 149, 154, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167], "parallel": [4, 24, 25, 47, 76, 87, 93, 95, 96, 98, 101, 103, 105, 109, 115, 116, 118, 125, 149], "ten": [4, 78], "thousand": [4, 78], "core": [4, 12, 78, 116, 127, 137], "wish": [4, 13, 14, 15, 24, 31, 38, 39, 52, 55, 62, 71, 80, 81, 96, 101, 104, 105, 107, 111, 113, 115, 125, 145, 153, 156, 157, 165], "discrib": 4, "book": [4, 12, 17, 27, 31, 46, 85, 103, 140], "levequ": [4, 16, 17, 26, 32, 56, 78, 92, 94, 96, 104, 110, 140, 148, 167, 170], "fvmhp": [4, 12, 16, 17, 27, 46, 78, 140, 148, 167, 170], "virtual": [4, 13, 27, 29, 106], "were": [4, 6, 14, 19, 22, 34, 45, 47, 58, 64, 67, 71, 72, 89, 115, 118, 119, 125, 128, 132, 135, 136, 137, 142, 144, 154, 162], "4": [4, 7, 8, 9, 13, 16, 17, 25, 27, 30, 32, 34, 35, 36, 39, 41, 42, 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133, 134, 135, 136, 137, 164], "doi": [4, 17, 56, 59, 61, 118, 130, 131, 132, 133, 134, 135, 136, 137, 138], "5281": [4, 59, 118, 130, 131, 132, 133, 134, 135, 136, 137, 138], "zenodo": [4, 61, 118, 130, 131, 132, 133, 134, 135, 136, 137, 138], "10896214": [4, 138], "here": [4, 13, 16, 18, 19, 31, 36, 41, 42, 52, 59, 62, 63, 70, 78, 82, 84, 88, 91, 96, 97, 99, 101, 102, 107, 108, 111, 113, 115, 123, 140, 141, 142, 159, 164, 170], "bibtex": [4, 59], "misc": [4, 129, 131], "url": [4, 12, 17, 55, 59, 127, 128, 162, 164], "year": [4, 17, 24, 55, 63, 96, 117, 128, 158], "releas": [4, 19, 20, 24, 27, 30, 31, 46, 49, 55, 60, 61, 62, 90, 96, 97, 104, 105, 110], "refer": [4, 5, 19, 22, 32, 34, 35, 36, 38, 39, 41, 48, 50, 55, 59, 66, 67, 71, 75, 88, 92, 94, 97, 98, 102, 104, 106, 111, 113, 127, 129, 139, 140, 142, 151, 158, 162, 164, 166, 167], "particular": [4, 6, 12, 22, 24, 30, 32, 34, 44, 47, 48, 50, 52, 55, 56, 59, 65, 66, 67, 71, 78, 82, 83, 85, 86, 88, 102, 103, 104, 106, 108, 113, 114, 115, 116, 118, 120, 123, 124, 125, 126, 127, 129, 130, 132, 147, 158, 159, 170], "obtain": [4, 6, 12, 34, 46, 47, 49, 50, 52, 62, 63, 72, 97, 98, 99, 115, 118, 132, 140, 144, 153, 162, 170], "your": [4, 6, 15, 16, 18, 19, 21, 22, 26, 27, 28, 36, 38, 40, 44, 47, 57, 58, 59, 60, 61, 62, 76, 81, 82, 84, 86, 87, 88, 89, 90, 93, 95, 96, 97, 98, 107, 108, 110, 111, 112, 113, 115, 116, 119, 127, 137, 140, 145, 146, 156, 157, 162, 165, 167], "multipl": [4, 5, 6, 13, 25, 30, 34, 35, 42, 47, 81, 88, 94, 97, 98, 109, 111, 116, 119, 125, 129, 139, 140, 149, 158, 159], "past": [4, 23, 27, 58, 64, 70, 103, 125, 128, 132, 138, 142, 143, 151], "17605": [4, 59, 138], "osf": [4, 138], "io": [4, 58, 59, 85, 98, 103, 138], "kmw6h": [4, 59, 138], "recent": [4, 13, 24, 29, 32, 49, 54, 58, 61, 66, 68, 76, 82, 84, 85, 118, 124, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 140, 154, 166], "articl": [4, 17, 96, 153], "l": [4, 7, 17, 34, 43, 61, 115, 140, 146, 150], "hadjimichael": [4, 17, 86], "2016": 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132, 141, 148, 149, 150, 152, 164, 165, 167], "balelevmitross02": [4, 17, 148, 170], "bergergeorgelevequemandli11": [4, 17], "levequegeorgeberg": [4, 17], "order": [4, 5, 6, 13, 16, 17, 18, 19, 31, 32, 34, 36, 47, 52, 57, 62, 64, 67, 70, 71, 72, 75, 77, 78, 82, 84, 85, 86, 88, 91, 92, 94, 96, 97, 98, 100, 101, 104, 108, 109, 110, 111, 115, 118, 123, 127, 132, 136, 140, 142, 144, 147, 148, 149, 150, 152, 158, 162, 164, 165, 167, 170], "sharpclaw": [4, 25, 27, 78, 86, 93, 95, 96, 101, 119, 140], "ketparlev13": [4, 17, 78, 96, 140], "ketchesonmandliet": [4, 17], "support": [4, 8, 13, 18, 19, 24, 36, 37, 41, 44, 49, 52, 55, 60, 61, 73, 75, 77, 85, 86, 88, 89, 94, 97, 98, 100, 102, 104, 115, 118, 123, 125, 126, 127, 128, 132, 133, 135, 136, 140, 142, 148, 149, 151, 158, 159, 162, 165, 168], "part": [4, 5, 19, 24, 26, 32, 36, 48, 51, 52, 62, 63, 64, 86, 89, 99, 105, 106, 108, 110, 114, 116, 118, 129, 167], "nsf": 4, "grant": [4, 86], "dm": 4, "8657319": 4, "9204329": 4, "9303404": 4, 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"sai": [5, 13, 16, 30, 63, 107, 115], "x_1": [5, 142], "x_2": [5, 142], "might": [5, 10, 13, 14, 16, 24, 30, 31, 37, 38, 39, 40, 41, 42, 51, 55, 57, 58, 62, 67, 70, 71, 72, 76, 82, 85, 88, 98, 102, 111, 113, 114, 115, 119, 148, 149, 162, 164, 166, 167], "box": [5, 32, 35, 55, 63, 142, 164], "interv": [5, 47, 49, 51, 88, 108, 115, 132, 142, 148, 151], "elsewher": [5, 26, 42, 96, 142], "sharpli": 5, "peak": 5, "gaussian": [5, 88, 108, 152], "final": [5, 32, 37, 44, 58, 64, 71, 75, 88, 91, 98, 108, 113, 119, 139, 141, 148, 150, 152, 164], "necessari": [5, 6, 13, 18, 19, 30, 36, 37, 38, 39, 50, 52, 55, 58, 59, 62, 63, 71, 75, 77, 78, 84, 88, 89, 94, 97, 118, 123, 125, 127, 139, 140, 147, 148, 149, 162, 165, 167], "place": [5, 16, 22, 26, 30, 32, 38, 39, 55, 58, 62, 66, 67, 74, 96, 98, 99, 101, 105, 111, 119, 125, 137, 167], "earlier": [5, 19, 22, 24, 32, 34, 41, 47, 57, 75, 88, 101, 119, 126, 139, 162, 164], "help": [5, 7, 9, 25, 26, 27, 30, 31, 42, 43, 53, 58, 60, 66, 81, 84, 96, 99, 105, 109, 116, 124, 130, 140, 153, 165], "identifi": [5, 38, 39, 42, 55, 70, 89, 115, 130, 158], "hat": 5, "given": [5, 19, 32, 42, 51, 55, 57, 63, 68, 71, 75, 92, 97, 99, 103, 104, 106, 109, 115, 132, 142, 143, 144, 151, 162, 164, 167], "t_r": 5, "reach": [5, 115, 139], "acoustics_1d_adjoint": 5, "acoustics_2d_adjoint": 5, "main": [5, 11, 12, 19, 21, 30, 42, 46, 58, 59, 70, 71, 78, 89, 91, 97, 101, 108, 109, 116, 118, 126, 135], "subdirectori": [5, 12, 22, 24, 25, 38, 39, 58, 59, 62, 66, 74, 84, 93, 98, 111, 116, 135, 147, 151, 153, 160, 164], "must": [5, 6, 13, 16, 18, 19, 22, 24, 30, 32, 34, 36, 42, 46, 49, 50, 55, 58, 61, 65, 66, 67, 70, 71, 75, 76, 77, 86, 89, 96, 97, 98, 101, 103, 104, 106, 107, 108, 109, 111, 115, 119, 123, 140, 142, 143, 144, 148, 149, 150, 151, 152, 158, 164, 165, 166, 167, 170], "makefil": [5, 6, 11, 14, 15, 16, 21, 22, 25, 27, 30, 36, 38, 39, 44, 58, 76, 78, 82, 84, 89, 95, 96, 115, 118, 119, 123, 125, 127, 128, 130, 136, 144, 145, 148, 150, 151, 152, 153, 156, 157, 162, 165, 167], "coeffici": [5, 68, 101, 102, 104, 106, 107, 108, 140, 151], "matric": [5, 140, 170], "transpos": 5, "vice": 5, "versa": 5, "q_t": [5, 101, 102, 104, 108, 167, 170], "q_x": [5, 102, 108, 170], "_x": [5, 42, 70, 102, 104, 164, 167, 170], "eigenvalu": 5, "unchang": [5, 71], "upon": [5, 106], "transform": [5, 44], "eigenvector": [5, 140, 170], "right": [5, 19, 32, 34, 65, 68, 75, 86, 94, 99, 101, 102, 106, 108, 132, 139, 140, 142, 170], "rp1_acoustics_variable_adjoint": 5, "f90": [5, 9, 15, 18, 19, 22, 33, 34, 36, 42, 47, 49, 56, 66, 67, 76, 77, 85, 101, 112, 115, 119, 123, 125, 127, 128, 129, 130, 132, 133, 136, 140, 141, 144, 145, 154, 156, 157, 162, 165, 167], "boundari": [5, 7, 19, 22, 27, 42, 55, 63, 67, 70, 75, 76, 89, 94, 102, 104, 108, 113, 120, 123, 127, 142, 148, 150, 152], "condit": [5, 7, 19, 22, 27, 65, 67, 78, 86, 87, 88, 89, 91, 98, 104, 112, 119, 120, 123, 127, 143, 148, 150, 151, 152], "adjust": [5, 13, 18, 19, 22, 34, 35, 48, 63, 77, 94, 98, 136, 139, 143, 148, 167], "principl": [5, 164, 167], "vanish": 5, "dure": [5, 24, 34, 42, 47, 63, 75, 78, 119, 143, 144, 150, 151, 152, 154, 162], "integr": [5, 24, 57, 64, 86, 96, 98, 104, 119, 120, 124, 150, 152, 161, 162, 167], "qinit": [5, 22, 24, 42, 48, 66, 67, 89, 132, 143, 144, 167], "setrun": [5, 6, 7, 8, 14, 16, 21, 22, 27, 34, 35, 36, 37, 38, 39, 41, 42, 43, 45, 48, 49, 50, 52, 63, 64, 66, 68, 70, 77, 78, 82, 96, 112, 113, 115, 119, 123, 124, 125, 128, 130, 132, 135, 136, 137, 139, 140, 143, 144, 154, 158, 162, 165, 167], "clawdata": [5, 19, 41, 49, 77, 119, 123, 139, 148, 149, 150, 151, 152], "tfinal": [5, 77, 88, 91, 108, 139, 148, 150, 152], "via": [5, 13, 24, 25, 26, 30, 31, 32, 36, 38, 39, 44, 47, 50, 52, 55, 58, 59, 61, 62, 64, 66, 70, 71, 75, 76, 78, 82, 85, 88, 94, 97, 100, 103, 105, 107, 111, 115, 116, 118, 127, 130, 140, 142, 146, 151, 153, 156, 157, 162, 164, 167], "num_output_tim": [5, 77, 88, 91, 98, 139, 148, 150, 152], "larg": [5, 6, 12, 19, 22, 36, 37, 38, 39, 42, 52, 55, 57, 58, 71, 76, 81, 96, 98, 99, 115, 116, 118, 124, 132, 135, 139, 142, 144, 148, 149, 164, 166], "frequent": [5, 22, 29, 36, 47, 64, 107, 124, 135], "enough": [5, 47, 49, 58, 64, 70, 149, 159, 161, 162], "them": [5, 13, 20, 24, 30, 31, 32, 34, 47, 51, 55, 58, 71, 78, 86, 88, 93, 97, 98, 99, 101, 109, 113, 116, 118, 120, 129, 135, 136, 137, 142, 155, 158, 164, 167], "reason": [5, 19, 49, 52, 55, 63, 75, 76, 78, 99, 101, 115, 148], "output_format": [5, 36, 37, 77, 91, 98, 135, 148, 150, 152], "binari": [5, 36, 44, 47, 59, 65, 86, 98, 100, 124, 135, 136, 139, 148, 164, 168], "manner": [5, 36, 42, 47, 55, 64, 70, 75, 81, 127, 144, 148, 156, 157, 162], "attribut": [5, 7, 18, 24, 32, 36, 37, 41, 47, 70, 75, 81, 83, 84, 88, 91, 94, 97, 99, 101, 103, 104, 115, 118, 119, 124, 128, 136, 139, 147, 148, 149, 151, 158, 164], "clawutil": [5, 11, 14, 21, 22, 25, 30, 43, 44, 54, 59, 60, 61, 66, 111, 116, 146, 148, 149, 150, 152, 164, 165], "clawrundata": [5, 47, 63, 128, 139, 148, 149, 150, 152], "adjointdata": [5, 128, 129], "ia": 5, "attribur": 5, "toler": [5, 34, 102, 109, 115, 116, 125, 149, 150, 151], "rundata": [5, 18, 19, 24, 34, 36, 41, 42, 47, 49, 63, 64, 115, 119, 130, 137, 139, 144, 148, 149, 150, 151, 152, 154], "use_adjoint": 5, "adjoint_outdir": 5, "abspath": [5, 41], "_output": [5, 13, 14, 34, 36, 38, 39, 47, 54, 64, 71, 82, 84, 93, 98, 100, 103, 124, 131, 165], "period": [5, 6, 16, 34, 66, 88, 101, 115, 118, 148, 150, 152], "t1": [5, 41, 47, 63, 64, 115, 132, 149, 150, 151], "t0": [5, 18, 19, 77, 139, 148, 150, 151, 152, 162], "t2": [5, 41, 47, 63, 64, 115, 132, 149, 150, 151], "addit": [5, 7, 13, 16, 17, 19, 25, 26, 30, 31, 34, 36, 39, 40, 41, 48, 49, 50, 63, 70, 75, 77, 78, 82, 83, 89, 92, 94, 96, 98, 104, 105, 106, 113, 115, 118, 123, 125, 126, 127, 128, 131, 132, 134, 135, 136, 140, 142, 148, 152, 158, 161, 162, 167, 168], "aux": [5, 6, 15, 22, 24, 29, 47, 57, 89, 96, 97, 98, 101, 103, 104, 106, 107, 119, 120, 125, 127, 140, 141, 145, 148, 149, 150, 151, 152, 167], "inner": [5, 115, 128], "product": [5, 32, 65, 86, 109, 115, 128], "amrdata": [5, 24, 34, 115, 130, 132, 149, 150, 151], "aux_typ": [5, 149, 150], "append": [5, 22, 34, 36, 41, 42, 47, 55, 64, 82, 91, 103, 115, 124, 125, 137, 139, 140, 150, 151], "num_aux": [5, 89, 97, 99, 101, 102, 106, 140, 148, 149, 150, 152, 167], "len": [5, 32, 37, 94, 150, 152, 164], "innerprod_index": 5, "base": [5, 6, 13, 19, 22, 23, 24, 30, 31, 32, 34, 35, 36, 48, 49, 51, 55, 56, 57, 58, 63, 64, 67, 68, 70, 71, 75, 78, 89, 91, 92, 94, 96, 97, 102, 103, 104, 106, 108, 109, 115, 117, 123, 126, 128, 132, 135, 136, 143, 148, 149, 150, 151, 152, 158, 164, 167, 170], "richardson": [5, 7, 24, 149, 150], "error": [5, 16, 22, 38, 39, 43, 55, 62, 71, 76, 82, 91, 96, 97, 98, 109, 115, 116, 128, 132, 137, 149, 150, 158, 165], "estimat": [5, 150], "flag_richardson": [5, 115, 124, 149, 150], "flag_richardson_tol": [5, 115, 149, 150], "1e": [5, 70, 152], "flag2refin": [5, 7, 24, 149, 150], "flag2refine_tol": [5, 115, 149, 150], "01": [5, 17, 42, 77, 94, 164], "we": [5, 6, 18, 19, 24, 26, 28, 34, 38, 39, 41, 42, 47, 52, 55, 57, 58, 59, 60, 62, 67, 70, 72, 75, 81, 84, 88, 89, 90, 91, 93, 94, 97, 98, 99, 100, 101, 104, 105, 106, 107, 108, 109, 110, 113, 116, 127, 130, 135, 137, 140, 141, 142, 164], "attempt": [5, 8, 11, 22, 35, 38, 39, 66, 97, 103, 109, 116, 119, 133, 158, 164, 165], "estim": [5, 68, 115, 149, 151], "step": [5, 6, 10, 16, 18, 19, 21, 30, 34, 36, 38, 39, 40, 47, 55, 58, 59, 64, 71, 77, 78, 81, 84, 86, 87, 88, 89, 91, 98, 101, 104, 106, 108, 113, 115, 118, 119, 124, 125, 135, 139, 140, 146, 148, 149, 150, 151, 152, 162, 170], "extrapol": [5, 7, 16, 24, 72, 101, 108, 127, 148, 149, 150, 152], "togeth": [5, 16, 30, 31, 32, 58, 60, 75, 115, 135], "experiment": [5, 86], "simpli": [5, 13, 19, 36, 38, 39, 40, 42, 47, 49, 55, 57, 66, 67, 70, 72, 88, 90, 91, 93, 98, 99, 105, 116, 118, 140, 142, 153, 158, 164, 167, 168], "magnitud": [5, 32, 115, 127, 151], "greater": [5, 34, 63, 68, 70, 105, 115, 139, 148, 149, 151], "model": [5, 12, 16, 17, 18, 19, 26, 27, 32, 34, 44, 48, 49, 50, 56, 57, 68, 98, 115, 124, 129, 130, 131, 142, 143, 144, 151, 154, 158, 159, 162], "davisleveque2016": [5, 17], "chile2010_adjoint": 5, "shallow": [5, 15, 16, 17, 18, 19, 27, 34, 36, 42, 48, 49, 52, 56, 70, 78, 89, 96, 112, 118, 120, 121, 123, 125, 127, 128, 136, 137, 140, 144, 145, 151, 156, 157, 162, 167], "water": [5, 16, 17, 18, 19, 27, 36, 42, 47, 48, 49, 50, 51, 52, 63, 70, 78, 81, 89, 96, 118, 120, 121, 125, 127, 128, 137, 140, 142, 143, 144, 151, 162, 164, 166, 167], "while": [5, 13, 16, 19, 32, 42, 55, 71, 75, 82, 84, 89, 94, 98, 99, 104, 109, 127, 140, 144, 151, 166], "suitabl": [5, 8, 16, 18, 19, 22, 48, 52, 55, 73, 77, 103, 114, 140, 143, 158, 164], "To": [5, 6, 13, 14, 18, 19, 20, 24, 27, 30, 31, 38, 39, 40, 41, 42, 43, 47, 50, 53, 55, 56, 59, 66, 69, 70, 71, 75, 76, 77, 82, 84, 85, 88, 90, 92, 93, 96, 97, 98, 99, 100, 101, 104, 105, 108, 111, 113, 114, 115, 116, 118, 123, 125, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 139, 143, 146, 148, 149, 153, 162, 168], "date": [5, 17, 30, 43, 51, 55, 58, 59, 66, 82, 158, 165], "across": [5, 115, 125, 162, 164], "ocean": [5, 16, 17, 19, 34, 49, 52, 55, 113, 115, 142, 151, 156, 157, 162], "wai": [5, 6, 13, 16, 19, 28, 30, 36, 38, 39, 41, 42, 47, 49, 55, 57, 58, 61, 62, 63, 65, 66, 82, 84, 85, 86, 88, 91, 93, 94, 99, 101, 103, 105, 108, 110, 111, 113, 114, 119, 125, 126, 127, 130, 137, 138, 140, 142, 147, 148, 155, 159, 162, 167, 169, 170], "target": [5, 62, 82, 89, 101, 130], "possibli": [5, 32, 36, 70, 88, 94, 111, 118, 124, 144], "deep": [5, 49, 70], "amplitud": [5, 125], "compar": [5, 18, 19, 24, 39, 47, 49, 52, 55, 59, 82, 98, 115, 116, 143, 149, 160, 166, 170], "essenti": [5, 57, 71, 104, 151, 162], "rest": [5, 24, 84, 113, 127, 143, 156, 157, 162, 164], "henc": [5, 36, 57, 58, 67, 72, 104, 110, 111, 115, 144], "take": [5, 6, 24, 29, 30, 32, 34, 37, 51, 58, 68, 70, 71, 75, 82, 88, 94, 101, 104, 108, 109, 110, 115, 116, 118, 122, 128, 136, 144, 148, 149, 150, 151, 164, 167, 170], "rpn2_geoclaw_adjoint_qwav": 5, "rpt2_geoclaw_adjoint_qwav": 5, "non": [5, 16, 59, 70, 78, 89, 101, 108, 128, 130, 148, 150, 152, 158, 170], "vector": [5, 24, 88, 92, 98, 106, 127, 135, 140, 141], "split": [5, 6, 76, 94, 97, 104, 123, 124, 132, 148, 149, 150, 152, 161, 167, 170], "flux": [5, 17, 34, 36, 37, 94, 102, 104, 140, 148, 170], "comment": [5, 11, 19, 26, 53, 59, 126, 135, 139], "rpn2": [5, 140], "basic": [6, 10, 12, 27, 32, 38, 40, 48, 61, 70, 71, 88, 94, 96, 97, 98, 102, 104, 116, 140, 141, 158, 170], "strategi": 6, "logic": [6, 16, 17, 34, 132, 151], "rectangular": [6, 7, 16, 17, 32, 34, 37, 41, 42, 48, 50, 63, 70, 94, 115, 127, 130, 135, 149, 151, 162], "too": [6, 19, 51, 55, 58, 59, 118, 124, 142, 150, 152, 154], "portion": [6, 36, 42, 55, 70, 89, 135, 161], "factor": [6, 55, 149, 151, 161, 164], "direct": [6, 8, 16, 24, 32, 34, 36, 38, 39, 47, 49, 51, 55, 59, 63, 65, 66, 71, 75, 76, 82, 86, 91, 101, 108, 115, 126, 140, 148, 149, 151, 164], "anisotrop": [6, 24], "perhap": [6, 12, 19, 34, 42, 47, 58, 82, 106, 109, 115, 142], "section": [6, 13, 16, 36, 38, 39, 42, 44, 49, 50, 52, 58, 59, 67, 71, 81, 84, 96, 116, 132, 139, 148, 151, 164], "cfl": [6, 49, 94, 98, 104, 108, 118, 119, 124, 148, 150, 151, 152], "spatial": [6, 17, 27, 32, 36, 37, 41, 42, 47, 48, 49, 64, 68, 72, 101, 115, 119, 123, 130, 132, 140, 143, 149, 150, 151, 152, 170], "reduc": [6, 16, 36, 42, 49, 55, 118, 124, 126, 135, 170], "thu": [6, 51, 98, 101, 127, 158], "proce": [6, 18, 19, 30, 151], "advanc": [6, 17, 36, 56, 70, 76, 108, 124, 136, 148, 149, 167], "taken": [6, 34, 70, 75, 98, 104, 115, 148, 167], "around": [6, 32, 34, 42, 63, 97, 113, 116, 130, 149, 150, 158, 164, 167], "librari": [6, 13, 15, 16, 18, 19, 22, 24, 27, 29, 30, 34, 36, 38, 39, 44, 47, 49, 56, 63, 66, 76, 77, 78, 86, 92, 97, 99, 104, 109, 111, 112, 115, 125, 130, 144, 145, 149, 156, 157, 165, 167], "bcnamr": [6, 16, 127, 148, 150, 167], "check": [6, 14, 15, 16, 22, 34, 38, 39, 43, 44, 54, 55, 56, 58, 59, 60, 62, 66, 71, 82, 85, 88, 89, 91, 96, 99, 103, 104, 106, 108, 109, 111, 112, 115, 120, 129, 142, 144, 145, 149, 150, 156, 157, 158, 164, 165, 166, 167], "denot": [6, 19, 24, 37, 47, 57, 140, 164], "procedur": [6, 16, 42, 48, 49, 59, 167], "updat": [6, 12, 13, 24, 25, 27, 34, 53, 56, 61, 62, 64, 84, 96, 104, 106, 107, 110, 113, 118, 119, 123, 125, 126, 127, 128, 129, 130, 140, 149, 150, 152, 155, 158, 161, 167], "consist": [6, 27, 34, 36, 51, 55, 59, 63, 99, 110, 125, 135, 136, 140, 142, 151, 162, 167], "replac": [6, 13, 31, 36, 41, 47, 52, 56, 58, 59, 61, 64, 66, 81, 89, 93, 97, 99, 100, 101, 102, 106, 109, 116, 118, 119, 125, 127, 129, 130, 135, 139, 140, 144, 164, 165], "ly": [6, 70], "within": [6, 16, 30, 36, 37, 58, 62, 70, 72, 78, 82, 100, 109, 111, 115, 140, 142, 147, 153, 164], "approxim": [6, 16, 18, 19, 27, 35, 52, 55, 72, 75, 140], "lead": [6, 13, 24, 34, 36, 52, 55, 68, 71, 75, 111, 114, 132, 144, 149], "total": [6, 32, 36, 55, 75, 77, 98, 104, 148, 149, 150, 152, 161], "mass": [6, 98, 118, 154], "restor": 6, "global": [6, 14, 94, 106, 109, 118, 143, 162, 166, 167], "fix": [6, 21, 22, 24, 27, 35, 37, 41, 47, 48, 49, 58, 59, 63, 64, 66, 70, 72, 86, 97, 102, 118, 119, 120, 121, 122, 123, 124, 125, 126, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 141, 148, 150, 152, 164], "up": [6, 13, 19, 24, 30, 31, 32, 34, 36, 38, 39, 42, 43, 47, 48, 55, 58, 59, 63, 66, 70, 71, 75, 77, 82, 88, 89, 91, 93, 95, 96, 97, 99, 104, 105, 108, 111, 113, 115, 116, 118, 123, 124, 127, 130, 132, 137, 142, 144, 147, 150, 152, 161, 162, 165, 166], "style": [6, 24, 30, 32, 36, 41, 53, 55, 70, 73, 82, 86, 91, 127, 151], "olig": [6, 17], "colella": [6, 17], "bergeroliger84": [6, 17], "bergercolella89": [6, 17], "fortran": [6, 9, 11, 13, 14, 19, 22, 25, 29, 30, 32, 34, 35, 36, 37, 38, 47, 48, 50, 57, 60, 62, 66, 67, 68, 72, 76, 77, 78, 81, 84, 86, 88, 89, 91, 94, 96, 97, 99, 101, 102, 104, 105, 106, 109, 111, 118, 123, 124, 125, 127, 128, 129, 135, 136, 140, 141, 146, 149, 150, 151, 152, 158, 160, 161, 162], "written": [6, 11, 27, 32, 34, 36, 37, 43, 47, 62, 63, 64, 65, 75, 77, 78, 82, 86, 95, 96, 97, 101, 125, 140, 148, 149, 150, 151, 152, 158, 164, 167], "ga": [6, 102], "dynam": [6, 22, 32, 36, 52, 75, 78, 149], "merg": [6, 13, 27, 30, 56, 58, 59, 62, 123], "earli": [6, 22, 144], "mjb": [6, 17], "rjl": [6, 17, 111, 129], "fulli": [6, 52, 55, 56, 126, 130, 140, 151, 158, 159], "consid": [6, 42, 52, 62, 70, 89, 111, 146, 153, 164], "adjac": [6, 16, 34, 48, 115, 144, 148], "equival": [6, 47, 56, 57, 63, 64, 77, 129, 135, 162], "copi": [6, 14, 15, 16, 19, 38, 39, 47, 55, 58, 59, 62, 71, 88, 91, 101, 106, 112, 113, 114, 115, 120, 124, 127, 131, 144, 145, 149, 153, 156, 157, 162, 167], "interior": [6, 16, 42, 77, 106], "howev": [6, 13, 16, 18, 19, 24, 34, 38, 39, 42, 44, 49, 50, 52, 55, 62, 65, 67, 70, 72, 75, 76, 77, 86, 89, 96, 115, 116, 125, 127, 129, 143, 144, 147, 151, 161], "lie": [6, 34, 35, 37, 70, 72, 115, 130, 142], "outsid": [6, 16, 41, 63, 70, 130, 142, 144, 162, 164], "li": [6, 16, 34, 37, 72, 115, 142], "along": [6, 14, 16, 19, 26, 29, 32, 34, 42, 47, 55, 58, 61, 75, 77, 111, 115, 118, 123, 138, 139, 142, 144, 151, 166], "unless": [6, 34, 43, 44, 63, 102, 110, 143, 148, 149, 164], "standard": [6, 16, 19, 32, 34, 36, 49, 55, 57, 71, 77, 89, 92, 104, 111, 115, 116, 150, 151, 152, 153, 162, 167, 170], "beyond": [6, 32, 110, 127], "modifi": [6, 9, 14, 15, 16, 18, 19, 22, 24, 29, 34, 38, 39, 42, 47, 48, 58, 59, 62, 64, 66, 71, 74, 82, 89, 92, 94, 96, 101, 111, 112, 113, 114, 115, 122, 124, 125, 126, 127, 132, 142, 144, 145, 148, 150, 151, 152, 156, 157, 162, 164, 167], "damag": [6, 65, 86], "bcn": [6, 16, 152, 167], "nd": [6, 16, 115, 127, 130, 167], "actual": [6, 29, 32, 36, 57, 62, 63, 71, 75, 82, 92, 97, 109, 113, 143, 151], "softwar": [6, 13, 26, 27, 31, 48, 52, 65, 86, 96, 97, 98, 153, 162], "With": [6, 24, 30, 47, 51, 53, 55, 62, 70, 78, 115, 124, 140, 142, 148], "opposit": [6, 16, 97], "side": [6, 16, 19, 20, 34, 55, 58, 68, 75, 97, 116, 118, 135, 136, 137, 140, 170], "everi": [6, 12, 30, 34, 36, 47, 64, 66, 67, 77, 88, 91, 93, 97, 98, 106, 115, 116, 118, 125, 126, 140, 144, 146, 148, 150, 152, 158, 162, 164, 167], "few": [6, 12, 13, 19, 24, 28, 30, 31, 39, 49, 52, 58, 70, 71, 89, 104, 108, 110, 115, 116, 130, 143, 160, 162, 167], "coarsest": [6, 19, 36, 55, 77, 119, 139, 148], "revis": [6, 125], "shock": [6, 17, 52, 104, 115], "accord": [6, 57, 97], "criteria": [6, 7, 24, 27, 34, 70, 106], "cluster": [6, 17, 115, 149, 150], "rigoutsi": 6, "bergerrigoutsis91": [6, 17], "nonoverlap": 6, "rectangl": [6, 7, 27, 32, 36, 70, 75, 115, 130, 164], "balanc": [6, 17, 78, 126, 141, 156, 157], "conflict": [6, 30, 62, 66, 71, 107, 111], "goal": 6, "possibl": [6, 13, 24, 28, 30, 32, 34, 36, 37, 47, 49, 51, 52, 55, 64, 65, 66, 75, 82, 86, 94, 97, 99, 100, 104, 109, 111, 115, 140, 142, 143, 148, 149, 162, 166, 167], "minim": [6, 62, 70, 97, 142, 149, 164], "overhead": [6, 76, 115, 161], "cutoff": [6, 150], "control": [6, 7, 25, 27, 34, 36, 44, 47, 58, 62, 64, 71, 77, 84, 87, 92, 94, 96, 97, 98, 99, 101, 115, 125, 130, 141, 151], "fraction": [6, 13, 32, 115, 148, 167, 170], "7": [6, 14, 31, 34, 36, 41, 42, 47, 51, 58, 64, 68, 70, 77, 82, 85, 94, 105, 111, 115, 132, 138, 142, 143, 144, 149, 150], "70": [6, 36, 55], "realli": [6, 72, 116, 167], "At": [6, 13, 29, 30, 36, 38, 39, 42, 70, 99, 104, 108, 110, 115, 130, 148], "present": [6, 26, 63, 72, 94, 97, 102, 103, 104, 109, 153, 154, 167, 170], "previous": [6, 24, 34, 70, 77, 84, 118, 123, 130, 144], "bilinear": [6, 34, 42, 47, 57, 72, 119, 120, 162], "doxygen": [6, 7, 27, 126], "flowchart": [6, 7, 27], "capabl": [7, 12, 19, 24, 34, 36, 47, 52, 56, 64, 70, 78, 89, 96, 119, 124, 125, 127, 128, 129, 130, 131, 135, 136, 164, 166], "block": [7, 32, 35, 42, 63, 75, 77, 78, 88, 97, 106, 109, 116, 167], "structur": [7, 10, 24, 34, 36, 37, 41, 59, 62, 66, 78, 103, 104, 125, 142, 147, 164], "input": [7, 14, 16, 22, 25, 27, 29, 32, 35, 37, 43, 48, 55, 63, 67, 70, 71, 77, 88, 91, 92, 94, 96, 102, 103, 104, 109, 113, 124, 127, 128, 129, 140, 150, 151, 152, 158, 159, 162, 164, 167], "indic": [7, 16, 19, 22, 24, 27, 31, 32, 34, 36, 41, 42, 44, 47, 48, 55, 57, 59, 62, 67, 71, 72, 80, 84, 94, 98, 99, 102, 104, 108, 111, 115, 116, 125, 130, 132, 140, 141, 148, 149, 150, 151, 152, 154, 162, 164, 167], "tool": [7, 8, 17, 24, 25, 30, 32, 34, 35, 36, 37, 38, 39, 42, 48, 49, 50, 51, 52, 55, 57, 60, 61, 62, 63, 71, 75, 80, 81, 82, 83, 85, 96, 111, 114, 120, 121, 125, 126, 130, 131, 151, 153, 162, 164, 166, 168], "matlab": [7, 24, 27, 38, 39, 80, 81, 82, 100, 110, 118, 127, 130, 131], "deprec": [7, 32, 48, 58, 62, 118, 123, 127, 135, 137, 162, 164], "debug": [7, 18, 44, 66, 77, 81, 98, 106, 111, 116, 135, 148, 150], "flag": [7, 12, 13, 18, 24, 27, 30, 31, 41, 43, 44, 48, 56, 62, 76, 89, 107, 109, 111, 118, 123, 128, 132, 150, 151], "sampl": [7, 8, 14, 17, 18, 27, 31, 36, 44, 47, 48, 51, 55, 64, 75, 111, 116, 135, 139, 142, 148, 149, 162, 164, 167], "ghost": [7, 16, 19, 76, 77, 94, 97, 104, 106, 125, 132, 136, 148, 150, 152, 161, 167, 170], "flagregion": [7, 27, 70, 115, 130, 132, 142, 149, 151], "rule": [7, 13, 27, 63, 70, 89], "convex": [7, 34], "slu": 7, "bounding_box": [7, 35], "mask_outsid": [7, 70], "write": [7, 30, 32, 35, 36, 37, 41, 42, 47, 48, 54, 57, 58, 68, 75, 77, 78, 81, 88, 91, 94, 95, 97, 98, 99, 103, 118, 125, 127, 150, 152, 158, 162, 164], "instanti": [7, 91, 99, 101, 104, 106, 136, 150, 152], "make_kml": 7, "simpl": [7, 31, 38, 39, 41, 48, 59, 72, 75, 89, 96, 101, 102, 104, 109, 114, 116, 164], "select": [7, 12, 13, 15, 16, 30, 34, 42, 70, 97, 98, 104, 112, 115, 119, 126, 130, 138, 145, 148, 151, 156, 157, 166], "continent": [7, 70], "shelf": [7, 70], "guid": [7, 13, 17, 20, 25, 26, 27, 48, 50, 56, 61, 96, 110, 115, 118, 126, 130, 135, 136, 137, 155], "adjoint": [7, 17, 27, 56, 115, 127, 128], "gaug": [7, 27, 34, 36, 48, 49, 63, 72, 94, 95, 106, 113, 119, 123, 124, 125, 126, 127, 130, 135, 139, 143, 147, 150], "extend": [8, 16, 24, 42, 63, 70, 71, 94, 127, 142, 144, 151, 162, 164, 170], "directli": [8, 18, 19, 21, 25, 34, 48, 52, 61, 71, 75, 82, 84, 88, 89, 92, 96, 106, 109, 111, 127, 135, 164, 168], "obviou": [8, 55], "elimin": [8, 24, 70, 89, 111, 127, 151], "gallery_classic_amrclaw": 8, "num_cel": [8, 24, 49, 94, 140, 148, 149, 150, 152], "refinement_ratios_i": [8, 149, 150], "sweep": [8, 140], "transvers": [8, 94, 125, 132, 140, 141, 148, 167, 170], "graph": 9, "understand": [9, 27, 38, 39, 52, 81, 96, 108, 115, 140], "filpatch": [9, 42, 125, 129, 132], "idea": [10, 26, 32, 70, 71, 78, 88, 108, 120, 164, 170], "overal": [10, 88], "who": [10, 12, 21, 24, 26, 34, 44, 52, 60, 118], "gori": 10, "monster": 10, "column": [10, 32, 34, 47, 49, 52, 64, 98, 102, 123, 142, 164], "markup": 11, "languag": [11, 81, 109], "restructur": [11, 58], "text": [11, 58, 59, 63, 77, 91, 97, 104, 123], "sphinx": [11, 25, 27, 59, 126], "covert": 11, "convert_readm": 11, "brows": [11, 26, 45, 55, 71, 153, 167], "insert": [11, 16, 75, 97, 118, 146], "script": [11, 21, 22, 30, 32, 34, 36, 43, 47, 55, 58, 66, 71, 78, 81, 86, 89, 93, 95, 96, 98, 99, 104, 109, 111, 116, 127, 131, 140, 147, 151, 152, 164], "invok": [11, 14, 19, 76, 144, 165], "minor": [11, 19, 55, 58, 98, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 130, 132, 134, 136, 137], "syntax": [11, 61, 146], "highlight": [11, 13], "header": [11, 32, 34, 36, 42, 47, 57, 70, 75, 77, 97, 103, 123, 125, 127, 158, 162, 164], "complex": [12, 19, 36, 41, 94], "archiv": [12, 23, 39, 55, 59, 116, 153, 160, 164, 166], "github": [12, 15, 19, 24, 25, 26, 27, 28, 31, 56, 58, 61, 62, 93, 101, 105, 112, 116, 118, 122, 124, 125, 126, 135, 138, 140, 141, 145, 156, 157, 165], "app": [12, 13, 20, 25, 28, 30, 31, 40, 45, 46, 75, 113, 114, 118, 122, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 141], "com": [12, 13, 19, 25, 26, 28, 30, 31, 51, 56, 58, 59, 61, 62, 97, 99, 101, 105, 122, 124, 125, 126, 135, 138, 141], "fvmbook": [12, 17, 45, 46], "galleri": [12, 17, 27, 34, 36, 38, 39, 40, 45, 48, 49, 59, 80, 81, 93, 96, 110, 116, 122, 126, 153, 160, 167], "anim": [12, 16, 36, 45, 49, 55, 123, 130, 131, 135, 153], "instal": [12, 13, 19, 20, 25, 27, 31, 38, 46, 55, 58, 59, 84, 86, 87, 90, 95, 97, 108, 110, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 146, 169], "collect": [12, 27, 28, 30, 32, 34, 75, 81, 88, 104, 153], "either": [12, 16, 19, 22, 32, 34, 36, 42, 48, 50, 55, 64, 66, 70, 71, 75, 77, 82, 84, 88, 94, 96, 97, 98, 104, 109, 111, 115, 116, 123, 124, 125, 127, 135, 140, 142, 144, 149, 151, 158, 162, 164, 167, 170], "clone": [12, 20, 25, 26, 45, 56, 58, 59, 62, 85, 99, 105, 114, 118, 135, 136, 137, 165], "git": [12, 13, 25, 26, 27, 28, 56, 59, 62, 96, 105, 116, 129], "navig": [12, 31, 58, 153], "green": [12, 18, 19, 63, 70, 75, 82, 116, 164], "button": [12, 13, 30, 55, 63, 126], "download": [12, 13, 30, 31, 32, 39, 40, 42, 48, 55, 59, 61, 62, 93, 99, 105, 127, 128, 138, 160, 164, 165, 166], "zip": [12, 55, 59], "illustr": [12, 27, 32, 34, 38, 46, 48, 49, 55, 70, 71, 75, 77, 114, 122, 123, 127, 129, 140, 142, 153, 154, 164], "variou": [12, 19, 22, 24, 32, 36, 41, 46, 52, 58, 71, 72, 75, 82, 84, 94, 108, 110, 111, 115, 125, 140, 147, 151, 154, 158], "visibl": [12, 13, 46, 55, 114, 153], "render": [12, 24, 34, 46, 55, 63, 168], "advantag": [12, 19, 36, 47, 64, 81, 97, 110, 116, 142], "independ": [12, 25, 32, 36, 37], "contact": [12, 93, 96, 105], "u": [12, 13, 16, 26, 31, 34, 36, 37, 51, 52, 59, 60, 62, 64, 86, 93, 96, 102, 105, 106, 107, 108, 113, 126, 140, 149, 152, 158, 166], "storm": [12, 17, 26, 27, 48, 123, 126, 127, 128, 129, 131, 132, 133], "surg": [12, 17, 26, 27, 48, 123, 126, 127, 128, 129, 132, 158], "empti": [12, 36, 47, 103, 106, 109, 111, 118, 148, 151, 158, 164], "gitmodul": 12, "pull": [12, 26, 28, 31, 58, 59, 61, 93, 101, 116, 122, 125, 126, 132, 135, 140], "request": [12, 26, 28, 32, 36, 37, 47, 58, 61, 77, 88, 93, 94, 98, 101, 103, 116, 118, 125, 127, 132, 140, 151, 158, 164], "init": [12, 27, 30, 42, 48, 56, 59, 61, 143, 151], "leav": [12, 13, 16, 47, 62, 149, 164], "off": [12, 13, 47, 52, 55, 63, 71, 84, 91, 98, 115, 135, 149, 164], "won": [12, 13, 70, 89, 164], "hurt": [12, 67], "maintain": [12, 30, 110, 127, 149, 162, 167], "flavor": [12, 23, 97], "demonstr": [12, 27, 93, 99], "agre": [12, 30, 42, 57, 140, 161, 164, 167], "seen": [12, 24, 34, 38, 39, 40, 52, 76, 101, 148, 153], "cloud": 13, "elast": [13, 75], "sign": [13, 26, 82, 132, 158], "account": [13, 26, 30, 59, 90, 99, 139], "750": 13, "free": [13, 55, 66, 75, 86, 90, 101, 105, 107], "micro": 13, "suffici": [13, 16, 18, 19, 22, 36, 47, 75, 76, 77, 113, 119, 135, 148, 151], "tier": 13, "inform": [13, 14, 24, 27, 34, 35, 37, 38, 39, 49, 50, 51, 52, 53, 54, 62, 67, 77, 82, 83, 84, 88, 89, 94, 96, 98, 99, 100, 102, 103, 109, 111, 124, 127, 128, 130, 136, 138, 139, 140, 143, 146, 148, 149, 151, 158, 161, 162, 165, 166, 167, 168], "uw": [13, 26], "escienc": 13, "aw": 13, "tutori": [13, 31, 59, 84, 87, 91, 96, 105, 111, 114], "gear": 13, "faq": [13, 27, 81], "price": 13, "charg": 13, "per": [13, 32, 37, 47, 49, 55, 63, 71, 76, 97, 149], "thereof": 13, "regardless": [13, 37, 42, 70, 115, 148], "cpu": [13, 56, 124, 127, 129, 161], "consol": [13, 98, 151], "tab": [13, 58, 138], "east": [13, 162], "cheaper": 13, "rate": 13, "menu": [13, 20, 27, 58, 63, 118, 126, 135, 136, 137, 138, 143, 166], "imag": [13, 38, 39, 42, 59, 63, 70, 116, 127, 142], "platform": [13, 55, 91, 99, 110, 116], "finish": [13, 82, 88], "load": [13, 63, 98, 100, 103, 109, 116, 164, 168], "databas": [13, 32, 75, 109, 113, 127, 162], "uwamath": 13, "bar": [13, 58, 158], "screen": [13, 30, 55, 63, 91, 98, 99, 124, 150, 152], "shapshot": 13, "machin": [13, 27, 76, 78, 116, 125, 146], "disk": [13, 47, 88, 97, 98, 116, 125], "ubuntu": 13, "linux": [13, 74, 85, 107, 116, 146], "popup": 13, "look": [13, 14, 24, 27, 30, 32, 42, 55, 58, 59, 63, 71, 82, 84, 89, 94, 99, 103, 104, 108, 109, 111, 116, 120, 127, 136, 142, 148, 149, 151, 161, 164, 165], "sort": [13, 42, 127, 147, 165], "larger": [13, 22, 34, 49, 55, 63, 75, 76, 77, 82, 94, 119, 125, 132, 149, 151, 162], "cost": [13, 104], "continu": [13, 24, 30, 32, 51, 53, 58, 86, 110, 118, 140, 148, 170], "eventu": [13, 48, 130], "don": [13, 29, 30, 58, 59, 82, 97, 98, 99, 105, 116, 150, 165], "pair": [13, 51, 97, 116, 164], "secur": 13, "quick": [13, 27, 39, 48, 50, 60, 85, 116, 160], "close": [13, 42, 55, 58, 63, 70, 71, 97, 115, 118, 130, 149, 158], "back": [13, 29, 31, 58, 59, 126], "statu": [13, 30, 54, 91, 108], "wait": 13, "until": [13, 34, 64, 70, 137, 144], "refresh": [13, 47], "bottom": [13, 15, 19, 32, 38, 39, 48, 52, 68, 70, 75, 88, 101, 102, 125, 126, 145, 156, 157], "scroll": 13, "down": [13, 32, 98, 124, 158, 162, 164], "dn": 13, "screenshot": [13, 55], "rjlkei": 13, "pem": 13, "abl": [13, 58, 111], "ssh": [13, 30], "keypair": 13, "50": [13, 17, 34, 51, 55, 72, 104, 120, 150], "19": [13, 17, 26, 133, 134, 138, 161], "75": [13, 17, 92, 108, 142], "229": 13, "amazonaw": 13, "gfortran": [13, 62, 76, 85, 87, 107, 118, 146, 165], "ipython": [13, 78, 82, 84, 89, 90, 96, 98, 105, 108, 111, 123, 124], "scipi": [13, 37, 89, 110, 137, 158, 164], "netcdf": [13, 37, 44, 48, 124, 127, 129, 131, 158, 164, 166], "apach": 13, "server": [13, 31, 42, 55, 58, 59, 70, 127, 162, 166], "apt": [13, 85], "fetch": [13, 51], "bring": [13, 55, 58, 71, 151], "master": [13, 15, 27, 31, 58, 59, 62, 101, 112, 118, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 141, 145, 156, 157], "make_lib": 13, "compil": [13, 18, 19, 27, 38, 39, 43, 50, 62, 67, 76, 78, 84, 85, 89, 96, 97, 101, 105, 109, 118, 119, 140, 141, 146], "bashrc": [13, 44, 107, 146], "Of": [13, 28, 75, 108, 113, 162], "cours": [13, 28, 34, 47, 50, 64, 75, 99, 100, 108, 110, 113, 151, 162], "tar": [13, 129, 138], "instruct": [13, 19, 20, 26, 27, 38, 39, 42, 55, 56, 58, 59, 88, 90, 96, 99, 105, 108, 111, 118, 126, 133, 135, 136, 137, 138, 139, 165], "window": [13, 32, 71, 84, 146], "respons": [13, 52, 88, 103], "pretti": 13, "slow": [13, 55, 98, 107], "_plot": [13, 38, 39, 47, 71, 84, 118, 147, 153], "local": [13, 17, 19, 22, 27, 30, 55, 58, 63, 66, 67, 71, 92, 94, 101, 106, 125, 127, 136, 144, 162, 164, 167], "sftp": 13, "much": [13, 19, 30, 34, 36, 44, 49, 55, 77, 78, 81, 85, 110, 115, 119, 123, 130, 135, 136, 142, 148, 151, 161, 164], "smaller": [13, 36, 55, 68, 78, 94, 98, 119, 135, 144, 148, 150, 151, 152, 164], "quicker": [13, 142], "browser": [13, 30, 31, 38, 39, 55, 58, 153], "explain": [13, 19, 34, 52, 70, 132, 148, 153], "webserv": 13, "inbound": 13, "port": [13, 31, 95, 96, 101, 149], "22": [13, 26, 149, 164], "80": [13, 17, 55, 99, 142], "drop": [13, 18, 19, 58, 85, 130, 132, 144, 148], "tcp": 13, "Then": [13, 16, 30, 31, 32, 36, 47, 58, 59, 60, 67, 70, 75, 76, 84, 88, 91, 99, 105, 106, 107, 111, 118, 140, 142, 164, 165], "someth": [13, 29, 30, 58, 66, 74, 81, 98, 103, 104, 111, 118, 162, 165, 167], "shot": 13, "ln": 13, "expos": [13, 78], "home": [13, 31, 32, 62, 146], "scp": 13, "TO": [13, 65, 86], "send": [13, 26, 101, 140], "remot": [13, 55, 59, 127, 164, 166], "rel": [13, 18, 19, 22, 32, 43, 50, 52, 55, 75, 76, 82, 96, 109, 111, 116, 118, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 143, 149, 151, 153, 162, 166], "end": [13, 31, 32, 34, 35, 36, 47, 51, 55, 59, 63, 91, 98, 102, 108, 110, 113, 115, 118, 124, 125, 127, 139, 141, 142, 150, 152, 158, 161], "retriev": [13, 37, 51, 84, 89, 104, 164, 166], "sit": 13, "idl": 13, "action": [13, 14, 89], "restart": [13, 27, 47, 77, 84, 96, 118, 124, 125, 126, 127, 129, 132, 136, 148, 150, 152], "later": [13, 36, 37, 42, 54, 55, 62, 84, 104, 139], "But": [13, 19, 34, 42, 55, 72, 82, 107, 120, 127, 144, 146], "futur": [13, 24, 27, 28, 38, 39, 42, 49, 52, 57, 63, 68, 88, 104, 110, 124, 125, 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64, 77, 89, 94, 98, 123, 127, 145, 162, 164], "capac": [15, 102, 145, 148, 149, 150, 152], "length": [15, 32, 37, 49, 52, 63, 75, 101, 106, 125, 132, 145, 148, 149, 150, 151, 167], "latter": [15, 18, 47, 70, 72, 101, 130, 142, 145, 148, 158, 167], "quantiti": [15, 18, 19, 34, 37, 63, 71, 72, 91, 95, 96, 102, 106, 141, 145, 151], "coordinate_system": [15, 18, 49, 64, 145, 151], "impos": [16, 89, 115, 156, 157, 170], "chapter": [16, 140, 148, 167], "choic": [16, 48, 81, 104, 148, 150, 151, 152, 167], "bc_lower": [16, 88, 101, 108, 148, 150, 152], "bc_upper": [16, 88, 101, 108, 148, 150, 152], "extrap": [16, 101, 108, 148, 150], "outflow": [16, 148, 150, 152], "move": [16, 34, 38, 39, 48, 58, 62, 64, 75, 101, 115, 119, 121, 126, 151, 154, 162, 163], "normal": [16, 19, 35, 36, 56, 58, 64, 82, 101, 111, 140, 141, 148, 149, 150, 151, 152], "fairli": [16, 52, 125], "good": [16, 19, 30, 52, 55, 65, 76, 86, 108, 113, 116, 125, 132, 140], "outgo": 16, "let": [16, 48, 62, 86, 113, 126, 132, 140], 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"changes-to-visclaw"], [124, "changes-to-visclaw"], [125, "changes-to-visclaw"], [126, "changes-to-visclaw"], [127, "changes-to-visclaw"], [128, "changes-to-visclaw"], [129, "changes-to-visclaw"], [130, "changes-to-visclaw"], [131, "changes-to-visclaw"], [132, "changes-to-visclaw"], [133, "changes-to-visclaw"], [134, "changes-to-visclaw"], [135, "changes-to-visclaw"], [136, "changes-to-visclaw"], [137, "changes-to-visclaw"]], "Changes to riemann": [[20, "changes-to-riemann"], [118, "changes-to-riemann"], [119, "changes-to-riemann"], [120, "changes-to-riemann"], [121, "changes-to-riemann"], [122, "changes-to-riemann"], [123, "changes-to-riemann"], [124, "changes-to-riemann"], [125, "changes-to-riemann"], [126, "changes-to-riemann"], [127, "changes-to-riemann"], [128, "changes-to-riemann"], [129, "changes-to-riemann"], [130, "changes-to-riemann"], [131, "changes-to-riemann"], [132, "changes-to-riemann"], [133, "changes-to-riemann"], [134, "changes-to-riemann"], [135, "changes-to-riemann"], [136, "changes-to-riemann"], [137, "changes-to-riemann"]], "Changes to amrclaw": [[20, "changes-to-amrclaw"], [118, "changes-to-amrclaw"], [119, "changes-to-amrclaw"], [120, "changes-to-amrclaw"], [121, "changes-to-amrclaw"], [122, "changes-to-amrclaw"], [123, "changes-to-amrclaw"], [124, "changes-to-amrclaw"], [125, "changes-to-amrclaw"], [126, "changes-to-amrclaw"], [127, "changes-to-amrclaw"], [128, "changes-to-amrclaw"], [129, "changes-to-amrclaw"], [130, "changes-to-amrclaw"], [131, "changes-to-amrclaw"], [132, "changes-to-amrclaw"], [133, "changes-to-amrclaw"], [134, "changes-to-amrclaw"], [135, "changes-to-amrclaw"], [136, "changes-to-amrclaw"], [137, "changes-to-amrclaw"]], "Changes to geoclaw": [[20, "changes-to-geoclaw"], [118, "changes-to-geoclaw"], [119, "changes-to-geoclaw"], [120, "changes-to-geoclaw"], [121, "changes-to-geoclaw"], [122, "changes-to-geoclaw"], [123, "changes-to-geoclaw"], [124, "changes-to-geoclaw"], [125, "changes-to-geoclaw"], [126, "changes-to-geoclaw"], [127, "changes-to-geoclaw"], [128, "changes-to-geoclaw"], [129, "changes-to-geoclaw"], [130, "changes-to-geoclaw"], [131, "changes-to-geoclaw"], [132, "changes-to-geoclaw"], [133, "changes-to-geoclaw"], [134, "changes-to-geoclaw"], [135, "changes-to-geoclaw"], [136, "changes-to-geoclaw"], [137, "changes-to-geoclaw"]], "Changes to PyClaw": [[20, "changes-to-pyclaw"], [117, "changes-to-pyclaw"], [118, "changes-to-pyclaw"], [119, "changes-to-pyclaw"], [120, "changes-to-pyclaw"], [121, "changes-to-pyclaw"], [122, "changes-to-pyclaw"], [123, "changes-to-pyclaw"], [124, "changes-to-pyclaw"], [125, "changes-to-pyclaw"], [126, "changes-to-pyclaw"], [127, "changes-to-pyclaw"], [128, "changes-to-pyclaw"], [129, "changes-to-pyclaw"], [130, "changes-to-pyclaw"], [131, "changes-to-pyclaw"], [132, "changes-to-pyclaw"], [133, "changes-to-pyclaw"], [134, "changes-to-pyclaw"], [135, "changes-to-pyclaw"], [136, "changes-to-pyclaw"], [137, "changes-to-pyclaw"]], "Other Clawpack Repositories": [[20, "other-clawpack-repositories"], [118, "other-clawpack-repositories"], [126, "other-clawpack-repositories"], [127, "other-clawpack-repositories"], [128, "other-clawpack-repositories"], [129, "other-clawpack-repositories"], [130, "other-clawpack-repositories"], [131, "other-clawpack-repositories"], [132, "other-clawpack-repositories"], [133, "other-clawpack-repositories"], [134, "other-clawpack-repositories"], [135, "other-clawpack-repositories"], [136, "other-clawpack-repositories"], [137, "other-clawpack-repositories"]], "Converting from Clawpack 4.3 to 4.6": [[21, "converting-from-clawpack-4-3-to-4-6"]], "Converting from Clawpack 4.6 to 5.0": [[22, "converting-from-clawpack-4-6-to-5-0"]], "Python conversion tool": [[22, "python-conversion-tool"]], "Clawpack 4.x links": [[23, "clawpack-4-x-links"]], "Changes in Clawpack 5.0": [[24, "changes-in-clawpack-5-0"]], "PyClaw in 5.0": [[24, "pyclaw-in-5-0"]], "Fortran package changes": [[24, "fortran-package-changes"]], "Changes to input parameters in setrun.py from 4.x to 5.0": [[24, "changes-to-input-parameters-in-setrun-py-from-4-x-to-5-0"]], "Changes to general parameters": [[24, "changes-to-general-parameters"]], "Changes to AMR parameters": [[24, "changes-to-amr-parameters"]], "Changes to GeoClaw parameters": [[24, "changes-to-geoclaw-parameters"]], "Changes to plotting routines": [[24, "changes-to-plotting-routines"]], "Clawpack components": [[25, "clawpack-components"]], "Other repositories": [[25, "other-repositories"]], "Clawpack Community": [[26, "clawpack-community"]], "User Workshops, Clinics, and Tutorials": [[26, "user-workshops-clinics-and-tutorials"]], "Available for streaming": [[26, "available-for-streaming"]], "Upcoming": [[26, "upcoming"], [26, "id1"]], "Recent": [[26, "recent"]], "Developer Workshops and Sprint Sessions": [[26, "developer-workshops-and-sprint-sessions"]], "Previous": [[26, "previous"]], "Other Clawpack events": [[26, "other-clawpack-events"]], "Contents": [[27, "id1"], [30, "contents"], [42, "contents"], [70, "contents"], [82, "contents"], [88, "contents"], [98, "contents"], [104, "contents"], [116, "contents"], [142, "contents"]], "Full Table of Contents": [[27, "full-table-of-contents"]], "Overview and Getting Started": [[27, "overview-and-getting-started"]], "Examples and Applications": [[27, "examples-and-applications"]], "Classic, AMRClaw, and GeoClaw": [[27, "classic-amrclaw-and-geoclaw"]], "Using the Fortran codes": [[27, "using-the-fortran-codes"]], "AMRClaw: adaptive mesh refinement": [[27, "amrclaw-adaptive-mesh-refinement"]], "GeoClaw: geophysical flows": [[27, "geoclaw-geophysical-flows"]], "PyClaw": [[27, "pyclaw"], [38, "pyclaw"], [96, "pyclaw"], [116, "pyclaw"], [160, "pyclaw"]], "Riemann": [[27, "riemann"]], "VisClaw: Plotting and Visualization Tools": [[27, "visclaw-plotting-and-visualization-tools"]], "Migrating applications from older versions of Clawpack": [[27, "migrating-applications-from-older-versions-of-clawpack"]], "Developers\u2019 resources": [[27, "developers-resources"]], "References": [[27, "references"], [56, "references"]], "Contributing examples and applications": [[28, "contributing-examples-and-applications"]], "current_data": [[29, "current-data"]], "Attributes of current_data:": [[29, "attributes-of-current-data"]], "Developers\u2019 Guide": [[30, "developers-guide"]], "Guidelines for contributing": [[30, "guidelines-for-contributing"]], "Reporting and fixing bugs": [[30, "reporting-and-fixing-bugs"]], "Developer communication": [[30, "developer-communication"]], "Installation instructions for developers": [[30, "installation-instructions-for-developers"]], "Cloning the most recent code from Github": [[30, "cloning-the-most-recent-code-from-github"]], "Checking out the master branch on each repository": [[30, "checking-out-the-master-branch-on-each-repository"]], "Updating to the latest master branch": [[30, "updating-to-the-latest-master-branch"]], "Never commit to master": [[30, "never-commit-to-master"]], "Adding your fork as a remote": [[30, "adding-your-fork-as-a-remote"]], "Modifying code": [[30, "modifying-code"]], "Issuing a pull request": [[30, "issuing-a-pull-request"]], "Testing a pull request": [[30, "testing-a-pull-request"]], "Top-level pull requests": [[30, "top-level-pull-requests"]], "Git workflow": [[30, "git-workflow"]], "Catching errors with Pyflakes and Pylint": [[30, "catching-errors-with-pyflakes-and-pylint"]], "Checking test coverage": [[30, "checking-test-coverage"]], "Trouble-Shooting Tips": [[30, "trouble-shooting-tips"]], "Docker for Clawpack": [[31, "docker-for-clawpack"]], "Using Version 5.9.0 or above": [[31, "using-version-5-9-0-or-above"]], "Getting started": [[31, "getting-started"]], "Stopping a container": [[31, "stopping-a-container"]], "Restarting a container": [[31, "restarting-a-container"]], "Running Jupyter notebooks": [[31, "running-jupyter-notebooks"]], "Moving files between the docker container and the host machine": [[31, "moving-files-between-the-docker-container-and-the-host-machine"]], "Some other useful docker commands": [[31, "some-other-useful-docker-commands"]], "Creating your own docker image": [[31, "creating-your-own-docker-image"]], "Dockerfiles for binder": [[31, "dockerfiles-for-binder"]], "dtopotools module for moving topography": [[32, "dtopotools-module-for-moving-topography"]], "Documentation auto-generated from the module docstrings": [[32, "module-clawpack.geoclaw.dtopotools"], [35, "module-clawpack.geoclaw.fgmax_tools"], [37, "module-clawpack.geoclaw.fgout_tools"], [51, "module-clawpack.geoclaw.util"], [63, "module-clawpack.geoclaw.kmltools"], [164, "module-clawpack.geoclaw.topotools"]], "Fortran 77 vs. Fortran 90 files": [[33, "fortran-77-vs-fortran-90-files"]], "Fixed grid monitoring (fgmax)": [[34, "fixed-grid-monitoring-fgmax"]], "Input file specification": [[34, "input-file-specification"], [36, "input-file-specification"]], "Different point styles": [[34, "different-point-styles"]], "Other attributes": [[34, "other-attributes"]], "Values to monitor": [[34, "values-to-monitor"]], "Choice of interpolation procedure": [[34, "choice-of-interpolation-procedure"], [36, "choice-of-interpolation-procedure"]], "A simple example": [[34, "a-simple-example"], [36, "a-simple-example"]], "Processing and plotting fgmax output": [[34, "processing-and-plotting-fgmax-output"]], "Format of the output files": [[34, "format-of-the-output-files"]], "fgmax examples": [[34, "fgmax-examples"]], "fgmax_tools module for working with fgmax grids": [[35, "fgmax-tools-module-for-working-with-fgmax-grids"]], "Fixed grid output (fgout)": [[36, "fixed-grid-output-fgout"]], "Format of fgout output": [[36, "format-of-fgout-output"]], "Using setplot.py to produce plots": [[36, "using-setplot-py-to-produce-plots"]], "Reading and plotting fgout arrays directly": [[36, "reading-and-plotting-fgout-arrays-directly"]], "fgout grid registration": [[36, "fgout-grid-registration"]], "fgout examples": [[36, "fgout-examples"]], "fgout_tools module for working with fgout grids": [[37, "fgout-tools-module-for-working-with-fgout-grids"]], "Running an example": [[38, "running-an-example"], [39, "running-an-example"], [40, "running-an-example"]], "Classic": [[38, "classic"], [39, "classic"], [160, "classic"]], "Testing your Fortran installation and running an example": [[39, "testing-your-fortran-installation-and-running-an-example"]], "More examples": [[39, "more-examples"]], "Testing a PyClaw installation and running an example": [[40, "testing-a-pyclaw-installation-and-running-an-example"]], "From the Jupyter notebook": [[40, "from-the-jupyter-notebook"]], "From the IPython interpreter": [[40, "from-the-ipython-interpreter"]], "From the command line": [[40, "from-the-command-line"], [93, "from-the-command-line"]], "Specifying flagregions for adaptive refinement": [[41, "specifying-flagregions-for-adaptive-refinement"]], "Using ruled rectangles as flagregions": [[41, "using-ruled-rectangles-as-flagregions"]], "Force Cells to be Dry Initially": [[42, "force-cells-to-be-dry-initially"]], "Sample topography from a 1/3 arcsecond DEM": [[42, "sample-topography-from-a-1-3-arcsecond-dem"], [70, "sample-topography-from-a-1-3-arcsecond-dem"]], "Creating the force_dry_init array": [[42, "creating-the-force-dry-init-array"]], "Create file to read into GeoClaw": [[42, "create-file-to-read-into-geoclaw"]], "Usage in GeoClaw Fortran code": [[42, "usage-in-geoclaw-fortran-code"]], "Internal GeoClaw modifications": [[42, "internal-geoclaw-modifications"]], "Fortran version": [[43, "fortran-version"]], "Makefiles": [[43, "makefiles"]], "More tips": [[43, "more-tips"]], "Fortran Compilers": [[44, "fortran-compilers"]], "FC environment variable": [[44, "fc-environment-variable"]], "FFLAGS environment variable": [[44, "fflags-environment-variable"]], "LFLAGS environment variable": [[44, "lflags-environment-variable"]], "Pre-Processor and the PPFLAGS environment variable": [[44, "pre-processor-and-the-ppflags-environment-variable"]], "gfortran compiler": [[44, "gfortran-compiler"]], "Intel fortran compiler": [[44, "intel-fortran-compiler"]], "Examples from the book FVMHP": [[45, "examples-from-the-book-fvmhp"]], "Available examples": [[45, "available-examples"]], "YouTube Videos": [[45, "youtube-videos"]], "Clawpack Gallery": [[46, "clawpack-gallery"]], "Gauges": [[47, "gauges"]], "Gauge parameters in setrun": [[47, "gauge-parameters-in-setrun"]], "Plotting tools": [[47, "plotting-tools"]], "Plotting gauge locations": [[47, "plotting-gauge-locations"]], "GeoClaw Description and Detailed Contents": [[48, "geoclaw-description-and-detailed-contents"]], "GeoClaw in One Space Dimension": [[49, "geoclaw-in-one-space-dimension"]], "Coordinate systems": [[49, "coordinate-systems"]], "Uniform and mapped grids": [[49, "uniform-and-mapped-grids"]], "Topograpy data": [[49, "topograpy-data"]], "Moving topograpy (dtopo) data": [[49, "moving-topograpy-dtopo-data"]], "Getting started with GeoClaw": [[50, "getting-started-with-geoclaw"]], "Running a GeoClaw code": [[50, "running-a-geoclaw-code"]], "Topography": [[50, "topography"]], "Plotting GeoClaw results": [[50, "plotting-geoclaw-results"]], "Setting up a new example": [[50, "setting-up-a-new-example"]], "geoclaw.util module of utility functions": [[51, "geoclaw-util-module-of-utility-functions"]], "Cautionary Hints on using GeoClaw": [[52, "cautionary-hints-on-using-geoclaw"]], "Tsunami hazard modeling": [[52, "tsunami-hazard-modeling"]], "GeoClaw plotting tools": [[53, "geoclaw-plotting-tools"]], "Plotting water depth or surface elevation": [[53, "plotting-water-depth-or-surface-elevation"]], "Tips on latitude-longitude coordinate axes": [[53, "tips-on-latitude-longitude-coordinate-axes"]], "Keeping track of repository versions with Git": [[54, "keeping-track-of-repository-versions-with-git"]], "Visualizing GeoClaw results in Google Earth": [[55, "visualizing-geoclaw-results-in-google-earth"]], "Basic requirements": [[55, "basic-requirements"]], "Optional GDAL library": [[55, "optional-gdal-library"]], "An example : The Chile 2010 tsunami event": [[55, "an-example-the-chile-2010-tsunami-event"]], "Plotting attributes needed for Google Earth": [[55, "plotting-attributes-needed-for-google-earth"]], "plotdata attributes": [[55, "plotdata-attributes"]], "plotfigure attributes": [[55, "plotfigure-attributes"]], "Creating the figures": [[55, "creating-the-figures"]], "plotaxes attributes": [[55, "plotaxes-attributes"]], "plotitem attributes": [[55, "plotitem-attributes"]], "Adding a colorbar overlay": [[55, "adding-a-colorbar-overlay"]], "Gauge plots": [[55, "gauge-plots"]], "Additional plotdata attributes": [[55, "additional-plotdata-attributes"]], "Plotting tips": [[55, "plotting-tips"]], "KML and KMZ files": [[55, "kml-and-kmz-files"]], "Tiling images for faster loading": [[55, "tiling-images-for-faster-loading"]], "Removing aliasing artifacts": [[55, "removing-aliasing-artifacts"]], "Creating multiple figures at different resolutions": [[55, "creating-multiple-figures-at-different-resolutions"]], "Mapping topography data to latitude/longitude coordinates": [[55, "mapping-topography-data-to-latitude-longitude-coordinates"]], "Publishing your results": [[55, "id1"]], "Using the GPU version of Clawpack": [[56, "using-the-gpu-version-of-clawpack"]], "Grid registration": [[57, "grid-registration"]], "NetCDF files": [[57, "netcdf-files"]], "Guide for updating this documentation": [[58, "guide-for-updating-this-documentation"]], "Git branches and tags": [[58, "git-branches-and-tags"]], "Configuration and style files": [[58, "configuration-and-style-files"]], "Updating the docs for a new release": [[58, "updating-the-docs-for-a-new-release"]], "To generate docs including previous versions": [[58, "to-generate-docs-including-previous-versions"]], "Updating for a new major version": [[58, "updating-for-a-new-major-version"]], "Updating the gallery": [[58, "updating-the-gallery"]], "Updating the webpages": [[58, "updating-the-webpages"]], "Extra files for webpages not built by Sphinx": [[58, "extra-files-for-webpages-not-built-by-sphinx"]], "Pages from other clawpack repositories": [[58, "pages-from-other-clawpack-repositories"]], "Guide for doing a Clawpack release": [[59, "guide-for-doing-a-clawpack-release"]], "Preparation": [[59, "preparation"]], "Version numbers": [[59, "version-numbers"]], "Release candidates": [[59, "release-candidates"]], "Create a tar file and a Github release": [[59, "create-a-tar-file-and-a-github-release"]], "Final release": [[59, "final-release"]], "Pypi": [[59, "pypi"]], "Zenodo": [[59, "zenodo"]], "Open Science Framework (OSF)": [[59, "open-science-framework-osf"]], "Updating the documentation": [[59, "updating-the-documentation"]], "Updating the apps repository": [[59, "updating-the-apps-repository"]], "Updating the Dockerfile": [[59, "updating-the-dockerfile"]], "Installing Clawpack": [[60, "installing-clawpack"]], "Next steps:": [[60, "next-steps"], [61, "next-steps"], [62, "next-steps"]], "Options for installing Clawpack Fortran codes": [[61, "options-for-installing-clawpack-fortran-codes"]], "tar file": [[61, "tar-file"]], "git clone": [[61, "git-clone"]], "pip install instructions": [[62, "pip-install-instructions"]], "Quick Installation of PyClaw with pip": [[62, "quick-installation-of-pyclaw-with-pip"]], "Quick Installation of all packages with pip": [[62, "quick-installation-of-all-packages-with-pip"]], "Using pip to install a different version": [[62, "using-pip-to-install-a-different-version"]], "Experimenting with code in the examples directories": [[62, "experimenting-with-code-in-the-examples-directories"]], "Troubleshooting pip install": [[62, "troubleshooting-pip-install"]], "kmltools module of utility functions": [[63, "kmltools-module-of-utility-functions"]], "Lagrangian gauges for particle tracking": [[64, "lagrangian-gauges-for-particle-tracking"]], "Specifying Lagrangian Gauges": [[64, "specifying-lagrangian-gauges"]], "Visclaw tools for plotting": [[64, "visclaw-tools-for-plotting"]], "An alternative using fgout grids": [[64, "an-alternative-using-fgout-grids"]], "Clawpack Makefiles": [[66, "clawpack-makefiles"]], "Applications directory Makefiles": [[66, "applications-directory-makefiles"]], "output": [[66, "output"]], "plots": [[66, "plots"]], "Variables": [[66, "variables"]], "Compiler flags": [[66, "compiler-flags"]], "Duplicate Base Source Name": [[66, "duplicate-base-source-name"]], "Library routines in Makefiles": [[67, "library-routines-in-makefiles"]], "Replacing files with the same name as library files": [[67, "replacing-files-with-the-same-name-as-library-files"]], "Using a modified library routine with a different name": [[67, "using-a-modified-library-routine-with-a-different-name"]], "Manning friction term": [[68, "manning-friction-term"]], "The mapc2p function": [[69, "the-mapc2p-function"]], "Marching Front algorithm": [[70, "marching-front-algorithm"]], "Function arguments": [[70, "function-arguments"]], "output array": [[70, "output-array"]], "creating a masked array": [[70, "creating-a-masked-array"]], "topofile mask for initializing dry points": [[70, "topofile-mask-for-initializing-dry-points"]], "fgmax points": [[70, "fgmax-points"]], "flag regions": [[70, "flag-regions"]], "The mask argument": [[70, "the-mask-argument"]], "The previous_pts_chosen argument": [[70, "the-previous-pts-chosen-argument"]], "Finding all points below a given elevation": [[70, "finding-all-points-below-a-given-elevation"]], "Create a buffer zone along shore": [[70, "create-a-buffer-zone-along-shore"]], "Choose points only near shore": [[70, "choose-points-only-near-shore"]], "Write out the masked array indicating fgmax points": [[70, "write-out-the-masked-array-indicating-fgmax-points"]], "Creating an AMR flag region": [[70, "creating-an-amr-flag-region"]], "Determining dry areas below MHW": [[70, "determining-dry-areas-below-mhw"]], "Plotting using Matlab": [[71, "plotting-using-matlab"]], "The Matlab search path": [[71, "the-matlab-search-path"]], "Creating output files": [[71, "creating-output-files"]], "The plotclaw command": [[71, "the-plotclaw-command"]], "The setplot file": [[71, "the-setplot-file"]], "The afterframe file": [[71, "the-afterframe-file"]], "Getting help": [[71, "getting-help"]], "Trouble shooting": [[71, "trouble-shooting"]], "Output files not found": [[71, "output-files-not-found"]], "MaxFrames not set": [[71, "maxframes-not-set"]], "Switching examples": [[71, "switching-examples"]], "Matlab Gallery": [[71, "matlab-gallery"]], "Nearshore interpolation": [[72, "nearshore-interpolation"]], "Using NetCDF output": [[73, "using-netcdf-output"]], "Creating a new application directory": [[74, "creating-a-new-application-directory"]], "Copying an existing example": [[74, "copying-an-existing-example"]], "Earthquake sources: Fault slip and the Okada model": [[75, "earthquake-sources-fault-slip-and-the-okada-model"]], "Fault slip on rectangular subfaults": [[75, "fault-slip-on-rectangular-subfaults"]], "Okada model": [[75, "okada-model"]], "Kinematic rupture": [[75, "kinematic-rupture"]], "Fault slip on triangular subfaults": [[75, "fault-slip-on-triangular-subfaults"]], "Using OpenMP": [[76, "using-openmp"]], "Using OpenMP with AMR": [[76, "using-openmp-with-amr"]], "Fixed grid output in GeoClaw": [[76, "fixed-grid-output-in-geoclaw"]], "Output data sytles and formats": [[77, "output-data-sytles-and-formats"]], "Output style": [[77, "output-style"]], "Output data formats": [[77, "output-data-formats"]], "ASCII output data format": [[77, "ascii-output-data-format"]], "fort.t0002": [[77, "fort-t0002"]], "fort.q0002": [[77, "fort-q0002"]], "Raw binary output data formats": [[77, "raw-binary-output-data-formats"]], "NetCDF output data format": [[77, "netcdf-output-data-format"]], "Output of aux arrays": [[77, "output-of-aux-arrays"]], "Which Clawpack solver should I use?": [[78, "which-clawpack-solver-should-i-use"]], "Installation and user interface": [[78, "installation-and-user-interface"]], "Algorithmic differences": [[78, "algorithmic-differences"]], "Parallel computing": [[78, "parallel-computing"]], "Clawpack Community Photos": [[79, "clawpack-community-photos"]], "2016 Developers\u2019 workshop at University of Washington": [[79, "id1"]], "2015 Developers\u2019 workshop at University of Utah": [[79, "id2"]], "2014 HPC3 workshop at KAUST": [[79, "id3"]], "2013 Claw-Dev workshop at UW": [[79, "id4"]], "2012 HPC3 workshop at KAUST": [[79, "id6"]], "2011 coding sprints at UW": [[79, "coding-sprints-at-uw"]], "2010 GeoClaw hacking UW": [[79, "geoclaw-hacking-uw"]], "Plotting examples": [[80, "plotting-examples"]], "Plotting with Visclaw": [[81, "plotting-with-visclaw"]], "Plotting as post-processing": [[81, "plotting-as-post-processing"]], "Plotting on the fly": [[81, "plotting-on-the-fly"]], "Plotting hints and FAQ": [[82, "plotting-hints-and-faq"]], "What\u2019s the difference between make .plots and make plots ?": [[82, "what-s-the-difference-between-make-plots-and-make-plots"]], "How to plot a something other than a component of q?": [[82, "how-to-plot-a-something-other-than-a-component-of-q"]], "How to add another curve to a plot, e.g. the true solution?": [[82, "how-to-add-another-curve-to-a-plot-e-g-the-true-solution"]], "How to change the title in a plot?": [[82, "how-to-change-the-title-in-a-plot"]], "How to specify outdir, the directory to find fort.* files for plotting?": [[82, "how-to-specify-outdir-the-directory-to-find-fort-files-for-plotting"]], "How to specify a different outdir for some plot item?": [[82, "how-to-specify-a-different-outdir-for-some-plot-item"]], "How to set plot parameters that are not provided as attributes of ClawPlotItem?": [[82, "how-to-set-plot-parameters-that-are-not-provided-as-attributes-of-clawplotitem"]], "How to change the size or background color of a figure?": [[82, "how-to-change-the-size-or-background-color-of-a-figure"]], "Specifying colormaps for pcolor or contourf plots": [[82, "specifying-colormaps-for-pcolor-or-contourf-plots"]], "How to debug setplot.py?": [[82, "how-to-debug-setplot-py"]], "Plotting routines for GeoClaw": [[83, "plotting-routines-for-geoclaw"]], "Plotting options in Python": [[84, "plotting-options-in-python"]], "Producing html plots from the command line": [[84, "producing-html-plots-from-the-command-line"]], "Producing a latex file with plots from the command line": [[84, "producing-a-latex-file-with-plots-from-the-command-line"]], "Setting plot parameters with a setplot function": [[84, "setting-plot-parameters-with-a-setplot-function"]], "Interactive plotting with Iplotclaw": [[84, "interactive-plotting-with-iplotclaw"]], "Access to current_data": [[84, "access-to-current-data"]], "printframes": [[84, "printframes"]], "Specifying what and how to plot": [[84, "specifying-what-and-how-to-plot"]], "Installation Prerequisites": [[85, "installation-prerequisites"]], "Operating system": [[85, "operating-system"]], "Fortran": [[85, "fortran"]], "Python": [[85, "python"]], "pip": [[85, "pip"]], "Git": [[85, "git"]], "About PyClaw": [[86, "about-pyclaw"]], "Contributors": [[86, "contributors"]], "PyClaw Basics": [[87, "pyclaw-basics"]], "Understanding Pyclaw Classes": [[88, "understanding-pyclaw-classes"]], "Flow of a Pyclaw Simulation": [[88, "flow-of-a-pyclaw-simulation"]], "Creation of a Pyclaw Solution": [[88, "creation-of-a-pyclaw-solution"]], "Creation of a Pyclaw Solver": [[88, "creation-of-a-pyclaw-solver"]], "Creating and Running a Simulation with Controller": [[88, "creating-and-running-a-simulation-with-controller"]], "Restarting a simulation": [[88, "restarting-a-simulation"]], "Outputting aux values": [[88, "outputting-aux-values"]], "Outputting derived quantities": [[88, "outputting-derived-quantities"], [98, "outputting-derived-quantities"]], "Porting a problem from Clawpack 4.6.x to PyClaw": [[89, "porting-a-problem-from-clawpack-4-6-x-to-pyclaw"]], "Running PyClaw in the cloud": [[90, "running-pyclaw-in-the-cloud"]], "Sage Math Cloud": [[90, "sage-math-cloud"]], "Pyclaw Controller Class": [[91, "pyclaw-controller-class"]], "pyclaw.controller.Controller": [[91, "pyclaw-controller-controller"]], "Pyclaw Limiters": [[92, "pyclaw-limiters"]], "clawpack.pyclaw.limiters.tvd": [[92, "module-clawpack.pyclaw.limiters.tvd"]], "CFL Independent Limiters": [[92, "cfl-independent-limiters"]], "CFL Dependent Limiters": [[92, "cfl-dependent-limiters"]], "Working with PyClaw\u2019s built-in examples": [[93, "working-with-pyclaw-s-built-in-examples"]], "Running and plotting examples": [[93, "running-and-plotting-examples"]], "Interactively in IPython": [[93, "interactively-in-ipython"]], "Built-in examples": [[93, "built-in-examples"]], "Adding new examples": [[93, "adding-new-examples"]], "PyClaw Geometry": [[94, "pyclaw-geometry"]], "Serial Geometry Objects": [[94, "serial-geometry-objects"]], "pyclaw.geometry.Domain": [[94, "pyclaw-geometry-domain"]], "pyclaw.geometry.Patch": [[94, "pyclaw-geometry-patch"]], "pyclaw.geometry.Grid": [[94, "pyclaw-geometry-grid"]], "pyclaw.geometry.Dimension": [[94, "pyclaw-geometry-dimension"]], "Parallel Geometry Objects": [[94, "parallel-geometry-objects"]], "petclaw.geometry.Domain": [[94, "petclaw-geometry-domain"]], "petclaw.geometry.Patch": [[94, "petclaw-geometry-patch"]], "Going Further": [[95, "going-further"]], "PyClaw installation": [[96, "pyclaw-installation"]], "Features": [[96, "features"]], "PyClaw Documentation": [[96, "pyclaw-documentation"]], "PyClaw Modules reference documentation": [[96, "pyclaw-modules-reference-documentation"]], "Riemann Solvers reference documentation": [[96, "riemann-solvers-reference-documentation"]], "Indices and tables": [[96, "indices-and-tables"]], "Citing PyClaw": [[96, "citing-pyclaw"]], "Pyclaw Input/Output Package": [[97, "pyclaw-input-output-package"]], "pyclaw.fileio.ascii": [[97, "module-clawpack.pyclaw.fileio.ascii"]], "pyclaw.fileio.binary": [[97, "module-clawpack.pyclaw.fileio.binary"]], "pyclaw.fileio.hdf5": [[97, "module-clawpack.pyclaw.fileio.hdf5"]], "pyclaw.fileio.netcdf": [[97, "module-clawpack.pyclaw.fileio.netcdf"]], "PyClaw output": [[98, "pyclaw-output"]], "Output frames": [[98, "output-frames"]], "When output is saved/written": [[98, "when-output-is-saved-written"]], "Where and how output is written": [[98, "where-and-how-output-is-written"]], "What output is written": [[98, "what-output-is-written"]], "Outputting functionals": [[98, "outputting-functionals"]], "Using gauges": [[98, "using-gauges"]], "Logging": [[98, "logging"]], "Running in parallel": [[99, "running-in-parallel"]], "Installing PETSc": [[99, "installing-petsc"]], "Testing your installation": [[99, "testing-your-installation"], [160, "testing-your-installation"]], "Running and plotting an example": [[99, "running-and-plotting-an-example"]], "Tips for making your application run correctly in parallel": [[99, "tips-for-making-your-application-run-correctly-in-parallel"]], "Passing options to PETSc": [[99, "passing-options-to-petsc"]], "Plotting PyClaw results": [[100, "plotting-pyclaw-results"]], "Basics": [[100, "basics"]], "Plotting result from parallel runs": [[100, "plotting-result-from-parallel-runs"]], "Setting up your own problem": [[101, "setting-up-your-own-problem"]], "Writing the initialization script": [[101, "writing-the-initialization-script"]], "Setting initial conditions": [[101, "setting-initial-conditions"]], "Setting auxiliary variables": [[101, "setting-auxiliary-variables"]], "Setting boundary conditions": [[101, "setting-boundary-conditions"]], "Setting solver options": [[101, "setting-solver-options"]], "Using your own Riemann solver": [[101, "using-your-own-riemann-solver"]], "Adding source terms": [[101, "adding-source-terms"]], "Setting up the Makefile": [[101, "setting-up-the-makefile"]], "Riemann Solver Package": [[102, "riemann-solver-package"]], "Acoustics": [[102, "acoustics"]], "Advection": [[102, "advection"]], "Burgers Equation": [[102, "burgers-equation"]], "Euler Equations": [[102, "euler-equations"]], "Shallow Water Equations": [[102, "shallow-water-equations"]], "PyClaw Solutions": [[103, "pyclaw-solutions"]], "pyclaw.solution.Solution": [[103, "pyclaw-solution-solution"]], "Using PyClaw\u2019s solvers: Classic and SharpClaw": [[104, "using-pyclaw-s-solvers-classic-and-sharpclaw"]], "SharpClaw Solvers": [[104, "sharpclaw-solvers"]], "pyclaw.sharpclaw": [[104, "pyclaw-sharpclaw"]], "Pyclaw Classic Clawpack Solvers": [[104, "pyclaw-classic-clawpack-solvers"]], "pyclaw.classic.solver": [[104, "pyclaw-classic-solver"]], "Change to Custom BC Function Signatures": [[104, "change-to-custom-bc-function-signatures"]], "Installing PyClaw": [[105, "installing-pyclaw"]], "Dependencies: Python, gfortran, numpy, and matplotlib": [[105, "dependencies-python-gfortran-numpy-and-matplotlib"]], "Obtaining Python, numpy, and matplotlib": [[105, "obtaining-python-numpy-and-matplotlib"]], "Clawpack": [[105, "clawpack"]], "Testing your installation with nose": [[105, "testing-your-installation-with-nose"]], "Next steps": [[105, "next-steps"]], "PyClaw State": [[106, "pyclaw-state"]], "Serial pyclaw.state.State": [[106, "serial-pyclaw-state-state"]], "Parallel petclaw.state.State": [[106, "parallel-petclaw-state-state"]], "Troubleshooting": [[107, "troubleshooting"], [165, "troubleshooting"]], "Compilation errors": [[107, "compilation-errors"]], "Use Fortran-ordered arrays": [[107, "use-fortran-ordered-arrays"]], "Installation": [[107, "installation"]], "PyClaw tutorial: Solve the acoustics equations": [[108, "pyclaw-tutorial-solve-the-acoustics-equations"]], "The Solver": [[108, "the-solver"]], "The domain": [[108, "the-domain"]], "Initial condition": [[108, "initial-condition"]], "Problem-specific parameters": [[108, "problem-specific-parameters"]], "The controller": [[108, "the-controller"]], "Pyclaw Utility Module": [[109, "pyclaw-utility-module"]], "pyclaw.util": [[109, "module-clawpack.pyclaw.util"]], "Python Hints": [[110, "python-hints"]], "Dropping support for Python 2.7": [[110, "dropping-support-for-python-2-7"]], "References and tutorials": [[110, "references-and-tutorials"]], "Notebooks": [[110, "notebooks"]], "Python path": [[111, "python-path"]], "whichclaw.py": [[111, "whichclaw-py"]], "Which version was imported?": [[111, "which-version-was-imported"]], "sys.path": [[111, "sys-path"]], "easy-install.pth": [[111, "easy-install-pth"]], "PYTHONPATH": [[111, "pythonpath"], [146, "pythonpath"]], "qinit default routines": [[112, "qinit-default-routines"]], "qinit routine in GeoClaw": [[112, "qinit-routine-in-geoclaw"]], "Quick start guide for storm surge modeling": [[113, "quick-start-guide-for-storm-surge-modeling"]], "Quick start guide for tsunami modeling": [[114, "quick-start-guide-for-tsunami-modeling"]], "AMR refinement criteria": [[115, "amr-refinement-criteria"]], "Flagging criteria": [[115, "flagging-criteria"]], "flag2refine": [[115, "flag2refine"]], "Richardson extrapolation": [[115, "richardson-extrapolation"]], "Specifying AMR regions": [[115, "specifying-amr-regions"]], "Implementation": [[115, "implementation"]], "Flagging criteria in GeoClaw": [[115, "flagging-criteria-in-geoclaw"]], "Regression testing": [[116, "regression-testing"]], "Running the tests": [[116, "running-the-tests"], [116, "id2"]], "Fortran codes": [[116, "fortran-codes"]], "Travis continuous integration": [[116, "travis-continuous-integration"]], "Diff tools for checking test output": [[116, "diff-tools-for-checking-test-output"]], "chardiff tool for line-by-line comparison of output files": [[116, "chardiff-tool-for-line-by-line-comparison-of-output-files"]], "imagediff tool for pixel comparison of plots": [[116, "imagediff-tool-for-pixel-comparison-of-plots"]], "Running and writing tests in PyClaw": [[116, "running-and-writing-tests-in-pyclaw"]], "Running serial tests simultaneously": [[116, "running-serial-tests-simultaneously"]], "Running a specific test": [[116, "running-a-specific-test"]], "Doctests": [[116, "doctests"]], "Writing New Tests": [[116, "writing-new-tests"]], "v5.0.0 release notes": [[117, "v5-0-0-release-notes"]], "Changes to classic, riemann, amrclaw, geoclaw, visclaw": [[117, "changes-to-classic-riemann-amrclaw-geoclaw-visclaw"]], "v5.10.0 release notes": [[118, "v5-10-0-release-notes"]], "v5.1.0 release notes": [[119, "v5-1-0-release-notes"]], "v5.2.0 release notes": [[120, "v5-2-0-release-notes"]], "v5.2.1 release notes": [[121, "v5-2-1-release-notes"]], "v5.2.2 release notes": [[122, "v5-2-2-release-notes"]], "v5.3.0 release notes": [[123, "v5-3-0-release-notes"]], "v5.3.1 release notes": [[124, "v5-3-1-release-notes"]], "v5.4.0 release notes": [[125, "v5-4-0-release-notes"]], "Global changes": [[125, "global-changes"]], "v5.4.1 release notes": [[126, "v5-4-1-release-notes"]], "Changes to documentation": [[126, "changes-to-documentation"], [127, "changes-to-documentation"]], "v5.5.0 release notes": [[127, "v5-5-0-release-notes"]], "v5.6.0 release notes": [[128, "v5-6-0-release-notes"]], "v5.6.1 release notes": [[129, "v5-6-1-release-notes"]], "v5.7.0 release notes": [[130, "v5-7-0-release-notes"]], "Python support": [[130, "python-support"]], "v5.7.1 release notes": [[131, "v5-7-1-release-notes"]], "v5.8.0 release notes": [[132, "v5-8-0-release-notes"]], "v5.8.1 release notes": [[133, "v5-8-1-release-notes"]], "v5.8.2 release notes": [[134, "v5-8-2-release-notes"]], "v5.9.0 release notes": [[135, "v5-9-0-release-notes"]], "v5.9.1 release notes": [[136, "v5-9-1-release-notes"]], "v5.9.2 release notes": [[137, "v5-9-2-release-notes"]], "Releases of Clawpack and release notes": [[138, "releases-of-clawpack-and-release-notes"]], "Other notes:": [[138, "other-notes"]], "Releases:": [[138, "id1"]], "Clawpack 4.x": [[138, "clawpack-4-x"]], "Checkpointing and restarting": [[139, "checkpointing-and-restarting"]], "Checkpointing a computation": [[139, "checkpointing-a-computation"]], "Restarting a computation": [[139, "restarting-a-computation"]], "Modifying the Makefile for a restart": [[139, "modifying-the-makefile-for-a-restart"]], "Output files after a restart": [[139, "output-files-after-a-restart"]], "Riemann solvers": [[140, "riemann-solvers"]], "One-dimensional Riemann solver": [[140, "one-dimensional-riemann-solver"]], "Pointwise Riemann solvers": [[140, "pointwise-riemann-solvers"]], "f-wave Riemann solvers": [[140, "f-wave-riemann-solvers"]], "2D Riemann solvers": [[140, "d-riemann-solvers"]], "Using a custom solver": [[140, "using-a-custom-solver"]], "Adding a solver to the Riemann repository": [[140, "adding-a-solver-to-the-riemann-repository"]], "Shallow water Riemann solvers in Clawpack": [[141, "shallow-water-riemann-solvers-in-clawpack"]], "One dimension": [[141, "one-dimension"]], "Two dimensions": [[141, "two-dimensions"]], "Layered shallow water equations": [[141, "layered-shallow-water-equations"]], "Potentially useful contributions (what\u2019s missing)": [[141, "potentially-useful-contributions-whats-missing"]], "Demonstrations": [[141, "demonstrations"]], "Roe": [[141, "roe"]], "HLL": [[141, "hll"]], "Ruled Rectangles": [[142, "ruled-rectangles"]], "Relation to convex polygons": [[142, "relation-to-convex-polygons"]], "Other attributes and methods": [[142, "other-attributes-and-methods"]], "ds": [[142, "ds"]], "slu": [[142, "slu"]], "bounding_box": [[142, "bounding-box"]], "mask_outside": [[142, "mask-outside"]], "read and write, and instantiating from a file": [[142, "read-and-write-and-instantiating-from-a-file"]], "make_kml": [[142, "make-kml"]], "A GeoClaw AMR flag region": [[142, "a-geoclaw-amr-flag-region"]], "A simple rectangle": [[142, "a-simple-rectangle"]], "Defining a Ruled Rectangle covering selected cells": [[142, "defining-a-ruled-rectangle-covering-selected-cells"]], "Example covering the continental shelf": [[142, "example-covering-the-continental-shelf"]], "Setting sea_level": [[143, "setting-sea-level"]], "Set Eta Init \u2013 spatially varying initial surface elevation": [[144, "set-eta-init-spatially-varying-initial-surface-elevation"]], "Default behavior, adjusting sea level by seismic deformation": [[144, "default-behavior-adjusting-sea-level-by-seismic-deformation"]], "Other use cases": [[144, "other-use-cases"]], "setaux default routines": [[145, "setaux-default-routines"]], "setaux routine in GeoClaw": [[145, "setaux-routine-in-geoclaw"]], "Set environment variables": [[146, "set-environment-variables"]], "CLAW": [[146, "claw"]], "FC": [[146, "fc"]], "Using setplot.py to specify the desired plots": [[147, "using-setplot-py-to-specify-the-desired-plots"]], "Plotting Data Objects": [[147, "plotting-data-objects"]], "Overview": [[147, "overview"]], "Specifying classic run-time parameters in setrun.py": [[148, "specifying-classic-run-time-parameters-in-setrun-py"]], "Input": [[148, "input"], [149, "input"]], "Output": [[148, "output"], [149, "output"]], "Run-time parameters": [[148, "run-time-parameters"], [149, "run-time-parameters"]], "Specifying AMRClaw run-time parameters in setrun.py": [[149, "specifying-amrclaw-run-time-parameters-in-setrun-py"]], "Special AMR parameters": [[149, "special-amr-parameters"]], "Debugging flags for additional printing": [[149, "debugging-flags-for-additional-printing"]], "Sample setrun.py module for AMRClaw": [[150, "sample-setrun-py-module-for-amrclaw"]], "Specifying GeoClaw parameters in setrun.py": [[151, "specifying-geoclaw-parameters-in-setrun-py"]], "Additional AMR parameters": [[151, "additional-amr-parameters"]], "General geo parameters": [[151, "general-geo-parameters"]], "Topography data file parameters": [[151, "topography-data-file-parameters"]], "qinit data file parameters": [[151, "qinit-data-file-parameters"]], "Force some cells to be initially dry": [[151, "force-some-cells-to-be-initially-dry"]], "Adjust sea level in some regions": [[151, "adjust-sea-level-in-some-regions"]], "AMR refinement region parameters": [[151, "amr-refinement-region-parameters"]], "Deprecated Fixedgrid output parameters": [[151, "deprecated-fixedgrid-output-parameters"]], "Fixed grid maximum monitoring / arrival times": [[151, "fixed-grid-maximum-monitoring-arrival-times"]], "Fixed grid output": [[151, "fixed-grid-output"]], "Storm Specification Data": [[151, "storm-specification-data"]], "Sample setrun.py module for classic Clawpack": [[152, "sample-setrun-py-module-for-classic-clawpack"]], "Saving and sharing results": [[153, "saving-and-sharing-results"]], "Making webpages of plots": [[153, "making-webpages-of-plots"]], "Sharing your results": [[153, "sharing-your-results"]], "Jupyter notebooks": [[153, "jupyter-notebooks"]], "Source terms for shallow water on the sphere": [[154, "source-terms-for-shallow-water-on-the-sphere"]], "Compiling the Sphinx documentation locally": [[155, "compiling-the-sphinx-documentation-locally"]], "src1d default routines": [[156, "src1d-default-routines"]], "src1d routine in GeoClaw": [[156, "src1d-routine-in-geoclaw"]], "src default routines": [[157, "src-default-routines"]], "src routine in GeoClaw": [[157, "src-routine-in-geoclaw"]], "Storm Specification Class and Tools": [[158, "storm-specification-class-and-tools"]], "Sources for Storm Surge Data": [[159, "sources-for-storm-surge-data"]], "Timing Statistics": [[161, "timing-statistics"]], "Topography data": [[162, "topography-data"]], "Downloading topography files": [[162, "downloading-topography-files"]], "NetCDF format": [[162, "netcdf-format"]], "Topography displacement files": [[162, "topography-displacement-files"]], "qinit data file": [[162, "qinit-data-file"]], "Python tools for working with topo and dtopo": [[163, "python-tools-for-working-with-topo-and-dtopo"]], "topotools module for working with topography data": [[164, "topotools-module-for-working-with-topography-data"]], "Troubleshooting Installation": [[165, "troubleshooting-installation"]], "Troubleshooting Fortran:": [[165, "troubleshooting-fortran"]], "Setting the Fortran compiler to be used by f2py (pip)": [[165, "setting-the-fortran-compiler-to-be-used-by-f2py-pip"]], "Trouble compiling Fortran code at the command line": [[165, "trouble-compiling-fortran-code-at-the-command-line"]], "Trouble running \u201cmake .exe\u201d": [[165, "trouble-running-make-exe"]], "Trouble running \u201cmake .data\u201d": [[165, "trouble-running-make-data"]], "Trouble running \u201cmake .output\u201d": [[165, "trouble-running-make-output"]], "Trouble running \u201cmake .plots\u201d": [[165, "trouble-running-make-plots"]], "Some sources of tsunami data": [[166, "some-sources-of-tsunami-data"]], "Topography / bathymetry": [[166, "topography-bathymetry"]], "Earthquake source models": [[166, "earthquake-source-models"]], "DART buoy data": [[166, "dart-buoy-data"]], "Tide gauges": [[166, "tide-gauges"]], "User files required for the Fortran code": [[167, "user-files-required-for-the-fortran-code"]], "Specifying the initial conditions": [[167, "specifying-the-initial-conditions"]], "Specifying the Riemann solver": [[167, "specifying-the-riemann-solver"]], "Specifying boundary conditions": [[167, "specifying-boundary-conditions"]], "Specifying problem-specific data": [[167, "specifying-problem-specific-data"]], "Specifying spatially-varying data using setaux": [[167, "specifying-spatially-varying-data-using-setaux"]], "Using b4step for work to be done before each time step": [[167, "using-b4step-for-work-to-be-done-before-each-time-step"]], "Using src for source terms": [[167, "using-src-for-source-terms"]], "Using src1d for source terms with AMRClaw": [[167, "using-src1d-for-source-terms-with-amrclaw"]], "Plotting with VisIt": [[168, "plotting-with-visit"]], "Clawpack Virtual Machine": [[169, "clawpack-virtual-machine"]], "Wave-propagation algorithms": [[170, "wave-propagation-algorithms"]], "One space dimension": [[170, "one-space-dimension"]], "Godunov\u2019s method": [[170, "godunov-s-method"]], "High-resolution methods": [[170, "high-resolution-methods"]], "f-wave formulation": [[170, "f-wave-formulation"]], "Capacity functions": [[170, "capacity-functions"]], "Source terms": [[170, "source-terms"]]}, "indexentries": {"clawplotaxes (built-in class)": [[0, "ClawPlotAxes"]], "gethandle()": [[0, "gethandle"], [2, "gethandle"], [3, "gethandle"]], "new_plotitem()": [[0, "new_plotitem"]], "clawplotdata (built-in class)": [[1, "ClawPlotData"]], "clearfigures()": [[1, "clearfigures"]], "clearframes()": [[1, "clearframes"]], "getaxes()": [[1, "getaxes"]], "getfigure()": [[1, "getfigure"]], "getframe()": [[1, "getframe"], [3, "getframe"]], "getitem()": [[1, "getitem"]], "iplotclaw()": [[1, "iplotclaw"]], "new_plotfigure()": [[1, "new_plotfigure"]], "plotframe()": [[1, "plotframe"]], "printframes()": [[1, "printframes"]], "showitems()": [[1, "showitems"]], "clawplotfigure (built-in class)": [[2, "ClawPlotFigure"]], "new_plotaxes()": [[2, "new_plotaxes"]], "clawplotitem (built-in class)": [[3, "ClawPlotItem"]], "csvfault (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.CSVFault"]], "dtopography (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.DTopography"]], "dtopography1d (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.DTopography1d"]], "fault (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.Fault"]], "fault1d (class in clawpack.geoclaw.dtopotools)": [[32, "clawpack.geoclaw.dtopotools.Fault1d"]], "mo() (clawpack.geoclaw.dtopotools.fault method)": [[32, 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"clawpack.geoclaw.dtopotools.SubFault1d.coordinate_specification"]], "corners (clawpack.geoclaw.dtopotools.subfault property)": [[32, "clawpack.geoclaw.dtopotools.SubFault.corners"]], "create_dtopo_xy() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.create_dtopo_xy"]], "create_dtopography() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.create_dtopography"]], "dz_at_t() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.dZ_at_t"]], "dz_at_t() (clawpack.geoclaw.dtopotools.dtopography1d method)": [[32, "clawpack.geoclaw.dtopotools.DTopography1d.dZ_at_t"]], "dz_cellave_at_t() (clawpack.geoclaw.dtopotools.dtopography1d method)": [[32, "clawpack.geoclaw.dtopotools.DTopography1d.dZ_cellave_at_t"]], "dz_max() (clawpack.geoclaw.dtopotools.dtopography method)": [[32, "clawpack.geoclaw.dtopotools.DTopography.dZ_max"]], "depth (clawpack.geoclaw.dtopotools.subfault 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"clawpack.geoclaw.dtopotools.SubFault.rise_shape"]], "rise_time (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rise_time"]], "rise_time_starting (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rise_time_starting"]], "rupture_time (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rupture_time"]], "rupture_type (clawpack.geoclaw.dtopotools.subfault attribute)": [[32, "clawpack.geoclaw.dtopotools.SubFault.rupture_type"]], "set_corners() (clawpack.geoclaw.dtopotools.subfault method)": [[32, "clawpack.geoclaw.dtopotools.SubFault.set_corners"]], "set_dynamic_slip() (clawpack.geoclaw.dtopotools.fault method)": [[32, "clawpack.geoclaw.dtopotools.Fault.set_dynamic_slip"]], "set_subfaults() (clawpack.geoclaw.dtopotools.siftfault method)": [[32, "clawpack.geoclaw.dtopotools.SiftFault.set_subfaults"]], "slip (clawpack.geoclaw.dtopotools.subfault attribute)": 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"fgmaxgrid (class in clawpack.geoclaw.fgmax_tools)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid"]], "adjust_fgmax_1d() (in module clawpack.geoclaw.fgmax_tools)": [[35, "clawpack.geoclaw.fgmax_tools.adjust_fgmax_1d"]], "bounding_box() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.bounding_box"]], "clawpack.geoclaw.fgmax_tools": [[35, "module-clawpack.geoclaw.fgmax_tools"]], "interp_dz() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.interp_dz"]], "ps4_to_arrays() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.ps4_to_arrays"]], "read_fgmax_grids_data() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.read_fgmax_grids_data"]], "read_output() (clawpack.geoclaw.fgmax_tools.fgmaxgrid method)": [[35, "clawpack.geoclaw.fgmax_tools.FGmaxGrid.read_output"]], "write_to_fgmax_data() 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property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.extent_centers"]], "extent_edges (clawpack.geoclaw.fgout_tools.fgoutgrid property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.extent_edges"]], "get_as_array() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.get_as_array"]], "h (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.h"]], "hss (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.hss"]], "hu (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.hu"]], "hv (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.hv"]], "make_fgout_fcn_xy() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.make_fgout_fcn_xy"]], "make_fgout_fcn_xyt() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.make_fgout_fcn_xyt"]], "print_netcdf_info() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.print_netcdf_info"]], "read_fgout_grids_data() (clawpack.geoclaw.fgout_tools.fgoutgrid method)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.read_fgout_grids_data"]], "read_frame() (clawpack.geoclaw.fgout_tools.fgoutgrid method)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.read_frame"]], "read_netcdf() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.read_netcdf"]], "read_netcdf_arrays() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.read_netcdf_arrays"]], "s (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.s"]], "set_plotdata() (clawpack.geoclaw.fgout_tools.fgoutgrid method)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.set_plotdata"]], "u (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.u"]], "v (clawpack.geoclaw.fgout_tools.fgoutframe property)": [[37, "clawpack.geoclaw.fgout_tools.FGoutFrame.v"]], "write_netcdf() (in module clawpack.geoclaw.fgout_tools)": [[37, "clawpack.geoclaw.fgout_tools.write_netcdf"]], "write_to_fgout_data() (clawpack.geoclaw.fgout_tools.fgoutgrid method)": [[37, "clawpack.geoclaw.fgout_tools.FGoutGrid.write_to_fgout_data"]], "bearing() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.bearing"]], "clawpack.geoclaw.util": [[51, "module-clawpack.geoclaw.util"]], "dist_latlong2meters() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.dist_latlong2meters"]], "dist_meters2latlong() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.dist_meters2latlong"]], "dms2decimal() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.dms2decimal"]], "fetch_noaa_tide_data() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.fetch_noaa_tide_data"]], "gctransect() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.gctransect"]], "haversine() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.haversine"]], "inv_haversine() (in module clawpack.geoclaw.util)": [[51, "clawpack.geoclaw.util.inv_haversine"]], "box2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.box2kml"]], "clawpack.geoclaw.kmltools": [[63, "module-clawpack.geoclaw.kmltools"]], "deg2dms() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.deg2dms"]], "dtopo2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.dtopo2kml"]], "f2s() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.f2s"]], "fgmax2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.fgmax2kml"]], "fgout2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.fgout2kml"]], "gauges2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.gauges2kml"]], "kml_build_colorbar() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.kml_build_colorbar"]], "kml_cb() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.kml_cb"]], "kml_png() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.kml_png"]], "kml_timespan() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.kml_timespan"]], "line2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.line2kml"]], "make_input_data_kmls() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.make_input_data_kmls"]], "pcolorcells_for_kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.pcolorcells_for_kml"]], "png2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.png2kml"]], "poly2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.poly2kml"]], "quad2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.quad2kml"]], "regions2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.regions2kml"]], "topo2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.topo2kml"]], "topo2kmz() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.topo2kmz"]], "transect2kml() (in module clawpack.geoclaw.kmltools)": [[63, "clawpack.geoclaw.kmltools.transect2kml"]], "controller (class in clawpack.pyclaw.controller)": [[91, "clawpack.pyclaw.controller.Controller"]], "f_file_name (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.F_file_name"]], "f_path (clawpack.pyclaw.controller.controller property)": [[91, "clawpack.pyclaw.controller.Controller.F_path"]], "check_validity() (clawpack.pyclaw.controller.controller method)": [[91, "clawpack.pyclaw.controller.Controller.check_validity"]], "compute_f (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.compute_F"]], "compute_p (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.compute_p"]], "file_prefix_p (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.file_prefix_p"]], "frames (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.frames"]], "keep_copy (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.keep_copy"]], "nstepout (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.nstepout"]], "num_output_times (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.num_output_times"]], "out_times (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.out_times"]], "outdir (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.outdir"]], "outdir_p (clawpack.pyclaw.controller.controller property)": [[91, "clawpack.pyclaw.controller.Controller.outdir_p"]], "output_file_prefix (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.output_file_prefix"]], "output_format (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.output_format"]], "output_options (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.output_options"]], "output_style (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.output_style"]], "overwrite (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.overwrite"]], "plot() (clawpack.pyclaw.controller.controller method)": [[91, "clawpack.pyclaw.controller.Controller.plot"]], "plotdata (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.plotdata"]], "run() (clawpack.pyclaw.controller.controller method)": [[91, "clawpack.pyclaw.controller.Controller.run"]], "rundir (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.rundir"]], "runmake (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.runmake"]], "savecode (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.savecode"]], "solver (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.solver"]], "tfinal (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.tfinal"]], "verbosity (clawpack.pyclaw.controller.controller property)": [[91, "clawpack.pyclaw.controller.Controller.verbosity"]], "viewable_attributes (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.viewable_attributes"]], "write_aux_always (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.write_aux_always"]], "write_aux_init (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.write_aux_init"]], "xclawcmd (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.xclawcmd"]], "xclawerr (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.xclawerr"]], "xclawout (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.xclawout"]], "xdir (clawpack.pyclaw.controller.controller attribute)": [[91, "clawpack.pyclaw.controller.Controller.xdir"]], "arora_roe() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.arora_roe"]], "beta_limiter() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.beta_limiter"]], "cada_torrilhon_limiter() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.cada_torrilhon_limiter"]], "cada_torrilhon_limiter_nonlinear() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.cada_torrilhon_limiter_nonlinear"]], "cfl_superbee() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.cfl_superbee"]], "cfl_superbee_theta() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.cfl_superbee_theta"]], "clawpack.pyclaw.limiters.tvd": [[92, "module-clawpack.pyclaw.limiters.tvd"]], "hyperbee_limiter() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.hyperbee_limiter"]], "limit() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.limit"]], "mc_limiter() (in module clawpack.pyclaw.limiters.tvd)": [[92, "clawpack.pyclaw.limiters.tvd.mc_limiter"]], "minmod_limiter() (in module 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attribute)": [[94, "clawpack.petclaw.geometry.Domain.fwave"]], "gauge_dir_name (clawpack.pyclaw.geometry.grid attribute)": [[94, "clawpack.pyclaw.geometry.Grid.gauge_dir_name"]], "gauge_file_names (clawpack.pyclaw.geometry.grid attribute)": [[94, "clawpack.pyclaw.geometry.Grid.gauge_file_names"]], "gauge_files (clawpack.pyclaw.geometry.grid attribute)": [[94, "clawpack.pyclaw.geometry.Grid.gauge_files"]], "gauges (clawpack.pyclaw.geometry.grid attribute)": [[94, "clawpack.pyclaw.geometry.Grid.gauges"]], "get_dim_attribute() (clawpack.pyclaw.geometry.grid method)": [[94, "clawpack.pyclaw.geometry.Grid.get_dim_attribute"]], "get_dim_attribute() (clawpack.pyclaw.geometry.patch method)": [[94, "clawpack.pyclaw.geometry.Patch.get_dim_attribute"]], "grid (clawpack.pyclaw.geometry.domain property)": [[94, "clawpack.pyclaw.geometry.Domain.grid"]], "kernel_language (clawpack.petclaw.geometry.domain attribute)": [[94, "clawpack.petclaw.geometry.Domain.kernel_language"]], "level (clawpack.pyclaw.geometry.patch attribute)": [[94, "clawpack.pyclaw.geometry.Patch.level"]], "lower_global (clawpack.pyclaw.geometry.patch property)": [[94, "clawpack.pyclaw.geometry.Patch.lower_global"]], "mthlim (clawpack.petclaw.geometry.domain attribute)": [[94, "clawpack.petclaw.geometry.Domain.mthlim"]], "name (clawpack.pyclaw.geometry.patch property)": [[94, "clawpack.pyclaw.geometry.Patch.name"]], "nodes (clawpack.pyclaw.geometry.dimension property)": [[94, "clawpack.pyclaw.geometry.Dimension.nodes"]], "nodes_with_ghost() (clawpack.pyclaw.geometry.dimension method)": [[94, "clawpack.pyclaw.geometry.Dimension.nodes_with_ghost"]], "num_cells_global (clawpack.pyclaw.geometry.patch property)": [[94, "clawpack.pyclaw.geometry.Patch.num_cells_global"]], "num_dim (clawpack.pyclaw.geometry.domain property)": [[94, "clawpack.pyclaw.geometry.Domain.num_dim"]], "num_dim (clawpack.pyclaw.geometry.grid property)": [[94, "clawpack.pyclaw.geometry.Grid.num_dim"]], "num_dim 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delta 21
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delta 21
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diff --git a/v5.8.x/.doctrees/contribute_apps.doctree b/v5.8.x/.doctrees/contribute_apps.doctree
index 4bc1f3b14c05dfd8d655047b4c51d327ea77d71a..49b2e7e7b418d5b80dbdc362c19542181a6a4856 100644
GIT binary patch
delta 21
ccmbQHJxzN<3?oO0L28~!p<&AA6hcWkV1nM~Ojdo=Kr$N^=zB_9#ZiO(Fn>wFvA0

delta 27
icmeBK!_u>cWkV1nhk2S=rFm(7R&x~N_9#ZiO(Fn?9tjKp

diff --git a/v5.8.x/.doctrees/docker_image.doctree b/v5.8.x/.doctrees/docker_image.doctree
index 25ad6669c6f79ac83302f0b972e1bcba9f452050..b40e71c00eefe46d7d7a1f2ec3e2decd93475544 100644
GIT binary patch
delta 23
fcmccmfbr@B#tmVN93=*+c_xL1DVyUMzvlq}dYlQQ

delta 23
fcmccmfbr@B#tmVN9Oh|emFA`SS)1b+zvlq}dW8wZ

diff --git a/v5.8.x/.doctrees/dtopotools_module.doctree b/v5.8.x/.doctrees/dtopotools_module.doctree
index 622f6d718036c65eda17429a5013a859c2345cbb..5efe354ec81050a8080f886e8e9928e96457f5b7 100644
GIT binary patch
delta 35
ocmeC~=I`$2-;lt_QDTsqXHsaG(wxEAp1}yhOxrUUnU#+K0MTg*?f?J)

delta 35
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