diff --git a/.bumpversion.cfg b/.bumpversion.cfg
index e5b82b403..e11b54a81 100644
--- a/.bumpversion.cfg
+++ b/.bumpversion.cfg
@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 12.0.2
+current_version = 12.0.3
 commit = True
 tag = False
 
diff --git a/README.md b/README.md
index db6b38a4f..67f6c02e8 100644
--- a/README.md
+++ b/README.md
@@ -1,4 +1,4 @@
-nzbToMedia v12.0.2
+nzbToMedia v12.0.3
 ==================
 
 Provides an [efficient](https://github.com/clinton-hall/nzbToMedia/wiki/Efficient-on-demand-post-processing) way to handle postprocessing for [CouchPotatoServer](https://couchpota.to/ "CouchPotatoServer") and [SickBeard](http://sickbeard.com/ "SickBeard") (and its [forks](https://github.com/clinton-hall/nzbToMedia/wiki/Failed-Download-Handling-%28FDH%29#sick-beard-and-its-forks))
diff --git a/cleanup.py b/cleanup.py
index 213aca99f..8c2d54d2b 100644
--- a/cleanup.py
+++ b/cleanup.py
@@ -5,6 +5,20 @@
 import os
 import subprocess
 import sys
+import shutil
+
+FOLDER_STRUCTURE = {
+    'libs': [
+        'common',
+        'custom',
+        'py2',
+        'win',
+    ],
+    'core': [
+        'auto_process',
+        'extractor',
+    ],
+}
 
 
 class WorkingDirectory(object):
@@ -106,7 +120,22 @@ def clean_folders(*paths):
         return result
 
 
-def clean(*paths):
+def force_clean_folder(path, required):
+    root, dirs, files = next(os.walk(path))
+    required = sorted(required)
+    if required:
+        print('Skipping required subfolders', required)
+    remove = sorted(set(dirs).difference(required))
+    missing = sorted(set(required).difference(dirs))
+    for path in remove:
+        pathname = os.path.join(root, path)
+        print('Removing', pathname)
+        shutil.rmtree(pathname)
+    if missing:
+        raise Exception('Required subfolders missing:', missing)
+
+
+def clean(paths):
     """Clean up bytecode and obsolete folders."""
     with WorkingDirectory(module_path()) as cwd:
         if cwd.working_directory != cwd.original_directory:
@@ -121,7 +150,7 @@ def clean(*paths):
             print(result or 'No bytecode to clean')
 
         if paths and os.path.exists('.git'):
-            print('\n-- Cleaning folders: {} --'.format(paths))
+            print('\n-- Cleaning folders: {} --'.format(list(paths)))
             try:
                 result = clean_folders(*paths)
             except SystemExit as error:
@@ -129,7 +158,15 @@ def clean(*paths):
             else:
                 print(result or 'No folders to clean\n')
         else:
-            print('Directory is not a git repository')
+            print('\nDirectory is not a git repository')
+            try:
+                items = paths.items()
+            except AttributeError:
+                print('Failed to clean, no subfolder structure given')
+            else:
+                for folder, subfolders in items:
+                    print('\nForce cleaning folder:', folder)
+                    force_clean_folder(folder, subfolders)
 
         if cwd.working_directory != cwd.original_directory:
             print('Returning to directory: ', cwd.original_directory)
@@ -138,4 +175,4 @@ def clean(*paths):
 
 
 if __name__ == '__main__':
-    clean('libs', 'core')
+    clean(FOLDER_STRUCTURE)
diff --git a/core/__init__.py b/core/__init__.py
index 39611d06b..9fa7c3206 100644
--- a/core/__init__.py
+++ b/core/__init__.py
@@ -52,7 +52,7 @@
     resume_torrent, remove_dir, remove_read_only, sanitize_name, update_download_info_status,
 )
 
-__version__ = '12.0.2'
+__version__ = '12.0.3'
 
 # Client Agents
 NZB_CLIENTS = ['sabnzbd', 'nzbget', 'manual']
diff --git a/setup.py b/setup.py
index 1307c1f44..ccd9786c3 100644
--- a/setup.py
+++ b/setup.py
@@ -18,7 +18,7 @@ def read(*names, **kwargs):
 
 setup(
     name='nzbToMedia',
-    version='12.0.2',
+    version='12.0.3',
     license='GPLv3',
     description='Efficient on demand post processing',
     long_description="""