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@cmc-aau

Center for Microbial Communities, Aalborg University, DK

A home for all things code for projects and science from the Center for Microbial Communities, Aalborg University

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  1. mfd_wiki mfd_wiki Public

    Wiki of the Microflora Danica project

    5

  2. mfd_metadata mfd_metadata Public

    Metadata cleaning and report making for the Microflora Danica project

    HTML 4 1

  3. MiSEQ_testbarcodes MiSEQ_testbarcodes Public

    Test an Illumina MiSEQ run for cross-talk and sample bleedover

    Shell 1 1

  4. nanopore_16Samp nanopore_16Samp Public

    Snakemake workflow to process 16S nanopore amplicon sequences (of any length) and produce an abundance table including taxonomy

    Python

  5. learn-git learn-git Public

    Practice using git(hub)

    4

  6. rstudio_server_setup rstudio_server_setup Public

    A guide on how to install RStudio Server on any Linux VM/machine

    Shell

Repositories

Showing 10 of 27 repositories
  • biocloud-docs Public

    Documentation website for our HPC cluster (and the likes)

    cmc-aau/biocloud-docs’s past year of commit activity
    0 Apache-2.0 1 0 0 Updated Nov 22, 2024
  • alphafold_singularity Public Forked from prehensilecode/alphafold_singularity

    Singularity recipe for AlphaFold

    cmc-aau/alphafold_singularity’s past year of commit activity
    Python 0 GPL-3.0 12 0 0 Updated Nov 7, 2024
  • biocloud-software Public

    Repo for all sorts of software, mainly modules or containers

    cmc-aau/biocloud-software’s past year of commit activity
    Shell 0 GPL-3.0 0 0 0 Updated Oct 22, 2024
  • alphafold Public Forked from google-deepmind/alphafold

    Open source code for AlphaFold.

    cmc-aau/alphafold’s past year of commit activity
    Python 0 Apache-2.0 2,300 0 0 Updated Oct 18, 2024
  • mfd_sr_mags Public

    Repository for phylogenetic overview of short-read MAGs from the Microflora Danica project

    cmc-aau/mfd_sr_mags’s past year of commit activity
    0 GPL-3.0 1 0 0 Updated Oct 16, 2024
  • nanopore_16Samp Public

    Snakemake workflow to process 16S nanopore amplicon sequences (of any length) and produce an abundance table including taxonomy

    cmc-aau/nanopore_16Samp’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Oct 1, 2024
  • mfd_danish_vs_global_microbiome_section Public

    This is a repo for the Danish vs global microbiome section of the MFD paper

    cmc-aau/mfd_danish_vs_global_microbiome_section’s past year of commit activity
    R 0 GPL-3.0 1 0 0 Updated Sep 30, 2024
  • snakemake_project_template Public template

    Testing snakemake

    cmc-aau/snakemake_project_template’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 18, 2024
  • mfd_hab_class Public

    Repo for MFD Ontology habitat classification using microbial fingerprint

    cmc-aau/mfd_hab_class’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Sep 5, 2024
  • mfd_overview Public

    General statistics and plots to summarize the MFD project

    cmc-aau/mfd_overview’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Sep 4, 2024
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