update environment to use latest current versions #131

	# Derived from https://github.com/marketplace/actions/setup-miniconda

	on: [push, pull_request]

	jobs:
	test-conda:
	name: conda (${{ matrix.python-version }}, ${{ matrix.os }})
	runs-on: ${{ matrix.os }}
	strategy:
	fail-fast: false
	matrix:
	os: ['ubuntu-latest', 'macos-latest', 'windows-latest']
	python-version: ['3.11']
	steps:
	- name: Check out repository
	uses: actions/checkout@v2
	- name: Cache conda
	uses: actions/cache@v1
	env:
	# Increase this value to reset cache if
	# etc/example-environment.yml has not changed
	CACHE_NUMBER: 0
	with:
	# ~/conda_pkgs_dir set via miniconda action
	path: ~/conda_pkgs_dir
	key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }}
	# This is the main miniconda rule
	- uses: conda-incubator/setup-miniconda@v2
	with:
	auto-update-conda: true
	python-version: ${{ matrix.python-version }}
	# A few rules to tell us th ebasic static
	- name: Conda info
	# This `bash -l {0}` is somehow needed to activate conda...
	shell: bash -l {0}
	run: conda info
	- name: status
	shell: bash -l {0}
	if: ${{ runner.os != 'Windows' }}
	run: \|
	set -x
	ls ~/
	which conda
	which python
	which pip
	which pwsh \|\| true
	pwd
	ls
	true
	# Actually install the environment
	- name: Install environment.yml
	shell: bash -l {0}
	run: conda env update --verbose -f environment.yml
	# Test
	- name: Test packages
	shell: bash -l {0}
	run: \|
	conda activate coderefinery
	bash test.sh

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