update dependencies in requirements.txt now also

requirements.txt

@@ -1,16 +1,17 @@
-click==8.1.3
-ipywidgets==8.0.4
-jupyterlab==3.6.3
-jupyterlab-git==0.41.0
-matplotlib==3.7.1
-myst-parser==0.18.1
-nbdime==3.1.1
-numpy==1.25.2
-pandas==2.0.3
-pytest==7.4.0
-pytest-cov==4.0.0
-seaborn==0.12.2
-snakemake==7.22.0
-sphinx==5.3.0
-sphinx-autobuild==2021.3.14
-sphinx_rtd_theme==1.2.0
+click==8.1.7
+ipywidgets==8.1.2
+jupyterlab==4.1.2
+jupyterlab-git==0.50.0
+matplotlib==3.8.3
+myst-parser==2.0.0
+nbdime==4.0.1
+numpy==1.26.4
+pandas==2.2.1
+pytest==8.0.2
+pytest-cov==4.1.0
+seaborn==0.13.2
+snakemake==8.5.3
+pulp<2.8.0
+sphinx==7.2.6
+sphinx-autobuild==2024.2.4
+sphinx_rtd_theme==2.0.0