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‎about/index.html

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<meta name="twitter:card" content="summary" />
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<meta property="twitter:title" content="About" />
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<script type="application/ld+json">
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{"description":"The Common Workflow Language (CWL) is an open standard for describing analysis workflows and tools in a way that makes them portable and scalable across a variety of software and hardware environments, from workstations to cluster, cloud, and high performance computing (HPC) environments. CWL is designed to meet the needs of data-intensive science, such as Bioinformatics, Medical Imaging, Astronomy, High Energy Physics, and Machine Learning.","@type":"WebSite","headline":"About","sameAs":["https://www.youtube.com/c/CommonWLorgStandard","https://floss.social/@cwl"],"url":"https://www.commonwl.org/about/","author":{"@type":"Person","name":"Common Workflow Language (CWL)"},"publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"https://www.commonwl.org/CWL-Logo-Header.png"},"name":"Common Workflow Language (CWL)"},"name":"Common Workflow Language (CWL)","@context":"https://schema.org"}</script>
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{"description":"The Common Workflow Language (CWL) is an open standard for describing analysis workflows and tools in a way that makes them portable and scalable across a variety of software and hardware environments, from workstations to cluster, cloud, and high performance computing (HPC) environments. CWL is designed to meet the needs of data-intensive science, such as Bioinformatics, Medical Imaging, Astronomy, High Energy Physics, and Machine Learning.","@type":"WebSite","headline":"About","sameAs":["https://www.youtube.com/c/CommonWLorgStandard","https://floss.social/@cwl"],"url":"https://www.commonwl.org/about/","author":{"@type":"Person","name":"Common Workflow Language (CWL)"},"name":"Common Workflow Language (CWL)","publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"https://www.commonwl.org/CWL-Logo-Header.png"},"name":"Common Workflow Language (CWL)"},"@context":"https://schema.org"}</script>
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<!-- End Jekyll SEO tag -->
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<script src="/assets/js/redirects.js"></script><link rel="stylesheet" href="https://pro.fontawesome.com/releases/v5.15.3/css/all.css" integrity="sha384-iKbFRxucmOHIcpWdX9NTZ5WETOPm0Goy0WmfyNcl52qSYtc2Buk0NCe6jU1sWWNB" crossorigin="anonymous">
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<link rel="stylesheet" href="/style.css"><link rel="apple-touch-icon" sizes="180x180" href=/favicon/apple-touch-icon.png>

‎index.html

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<meta name="twitter:card" content="summary" />
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<meta property="twitter:title" content="Home" />
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<script type="application/ld+json">
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{"description":"The Common Workflow Language (CWL) is an open standard for describing analysis workflows and tools in a way that makes them portable and scalable across a variety of software and hardware environments, from workstations to cluster, cloud, and high performance computing (HPC) environments. CWL is designed to meet the needs of data-intensive science, such as Bioinformatics, Medical Imaging, Astronomy, High Energy Physics, and Machine Learning.","@type":"WebSite","headline":"Home","sameAs":["https://www.youtube.com/c/CommonWLorgStandard","https://floss.social/@cwl"],"url":"https://www.commonwl.org/","author":{"@type":"Person","name":"Common Workflow Language (CWL)"},"publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"https://www.commonwl.org/CWL-Logo-Header.png"},"name":"Common Workflow Language (CWL)"},"name":"Common Workflow Language (CWL)","@context":"https://schema.org"}</script>
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{"description":"The Common Workflow Language (CWL) is an open standard for describing analysis workflows and tools in a way that makes them portable and scalable across a variety of software and hardware environments, from workstations to cluster, cloud, and high performance computing (HPC) environments. CWL is designed to meet the needs of data-intensive science, such as Bioinformatics, Medical Imaging, Astronomy, High Energy Physics, and Machine Learning.","@type":"WebSite","headline":"Home","sameAs":["https://www.youtube.com/c/CommonWLorgStandard","https://floss.social/@cwl"],"url":"https://www.commonwl.org/","author":{"@type":"Person","name":"Common Workflow Language (CWL)"},"name":"Common Workflow Language (CWL)","publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"https://www.commonwl.org/CWL-Logo-Header.png"},"name":"Common Workflow Language (CWL)"},"@context":"https://schema.org"}</script>
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<!-- End Jekyll SEO tag -->
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<script src="/assets/js/redirects.js"></script><link rel="stylesheet" href="https://pro.fontawesome.com/releases/v5.15.3/css/all.css" integrity="sha384-iKbFRxucmOHIcpWdX9NTZ5WETOPm0Goy0WmfyNcl52qSYtc2Buk0NCe6jU1sWWNB" crossorigin="anonymous">
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<link rel="stylesheet" href="/style.css"><link rel="apple-touch-icon" sizes="180x180" href=/favicon/apple-touch-icon.png>

‎timeline/index.html

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</span>
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</li><div class="timeline__event--separator"></div><li class="timeline__event">
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<span class="timeline__event--year">2024</span>
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<span class="timeline__event--data"><a href="https://cwl.discourse.group/c/cwlcon-2024/14">2024 CWL Conference<a> (VU Amsterdam, Netherlands and Online)<br />
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&lt;/span&gt;
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&lt;/li&gt;&lt;/ul&gt;
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&lt;/div&gt;
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<span class="timeline__event--data"><a href="https://cwl.discourse.group/c/cwlcon-2024/14">2024 CWL Conference</a> (VU Amsterdam, Netherlands and Online)<br />
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</span>
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</li></ul>
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</div>
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</a></a></span></li></ul></div>
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</div>
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</article>

‎v1.2/CommandLineTool.html

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</ol><li><a href="#Updated_Conformance_Tests_for_v1.2.1">1.2.2 Updated Conformance Tests for v1.2.1</a><ol>
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</ol><li><a href="#New_Mandatory_Conformance_Tests_for_v1.2.1">1.2.3 New Mandatory Conformance Tests for v1.2.1</a><ol>
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</ol><li><a href="#New_Optional_Conformance_Tests_for_v1.2.1">1.2.4 New Optional Conformance Tests for v1.2.1</a><ol>
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<li><a href="#`InlineJavaScriptRequirement`">1.2.4.1 `InlineJavaScriptRequirement`</a><ol>
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</ol><li><a href="#`MultipleInputFeatureRequirement`">1.2.4.2 `MultipleInputFeatureRequirement`</a><ol>
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</ol><li><a href="#`InitialWorkDirRequirement`">1.2.4.3 `InitialWorkDirRequirement`</a><ol>
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<li><a href="#InlineJavascriptRequirement_tests">1.2.4.1 InlineJavascriptRequirement tests</a><ol>
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</ol><li><a href="#MultipleInputFeatureRequirement_tests">1.2.4.2 MultipleInputFeatureRequirement tests</a><ol>
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</ol><li><a href="#InitialWorkDirRequirement_tests">1.2.4.3 InitialWorkDirRequirement tests</a><ol>
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</ol></li></ol></li></ol><li><a href="#Introduction_to_the_CWL_Command_Line_Tool_standard_v1.2">1.3 Introduction to the CWL Command Line Tool standard v1.2</a><ol>
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</ol><li><a href="#Changelog">1.4 Changelog</a><ol>
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</ol><li><a href="#Purpose">1.5 Purpose</a><ol>
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<li><code>paramref_arguments_inputs</code>: confirm that the <code>inputs</code> object is
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available to parameter references in arguments.</li>
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</ul>
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<h3 id="New_Optional_Conformance_Tests_for_v1.2.1" class="section">1.2.4 New Optional Conformance Tests for v1.2.1 <a href="#New_Optional_Conformance_Tests_for_v1.2.1">&sect;</a></h3><h4 id="<code>InlineJavaScriptRequirement</code>" class="section">1.2.4.1 <code>InlineJavaScriptRequirement</code> <a href="#<code>InlineJavaScriptRequirement</code>">&sect;</a></h4><ul>
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<h3 id="New_Optional_Conformance_Tests_for_v1.2.1" class="section">1.2.4 New Optional Conformance Tests for v1.2.1 <a href="#New_Optional_Conformance_Tests_for_v1.2.1">&sect;</a></h3><h4 id="InlineJavascriptRequirement_tests" class="section">1.2.4.1 InlineJavascriptRequirement tests <a href="#InlineJavascriptRequirement_tests">&sect;</a></h4><ul>
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<li><code>record_outputeval</code>: Use of <code>outputEval</code> on a record itself, not
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the fields of the record.</li>
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<li><code>staging-basename</code>: Use of an <code>ExpressionTool</code> to change <code>basename</code> of
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numbers are represented on the command line using decimals, not
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scientific notation.</li>
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</ul>
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<h4 id="<code>MultipleInputFeatureRequirement</code>" class="section">1.2.4.2 <code>MultipleInputFeatureRequirement</code> <a href="#<code>MultipleInputFeatureRequirement</code>">&sect;</a></h4><ul>
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<h4 id="MultipleInputFeatureRequirement_tests" class="section">1.2.4.2 MultipleInputFeatureRequirement tests <a href="#MultipleInputFeatureRequirement_tests">&sect;</a></h4><ul>
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<li><code>multiple-input-feature-requirement</code>: <code>MultipleInputFeatureRequirement</code> on
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workflow outputs.</li>
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</ul>
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<h4 id="<code>InitialWorkDirRequirement</code>" class="section">1.2.4.3 <code>InitialWorkDirRequirement</code> <a href="#<code>InitialWorkDirRequirement</code>">&sect;</a></h4><ul>
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<h4 id="InitialWorkDirRequirement_tests" class="section">1.2.4.3 InitialWorkDirRequirement tests <a href="#InitialWorkDirRequirement_tests">&sect;</a></h4><ul>
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<li><code>iwd-subdir</code>: Test emitting a subdirectory from the initial working
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directory.</li>
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</ul>

‎v1.2/Workflow.html

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</ol><li><a href="#Updated_Conformance_Tests_for_v1.2.1">1.2.2 Updated Conformance Tests for v1.2.1</a><ol>
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</ol><li><a href="#New_Mandatory_Conformance_tests_for_v1.2.1">1.2.3 New Mandatory Conformance tests for v1.2.1</a><ol>
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</ol><li><a href="#New_Optional_Conformance_Tests_for_v1.2.1">1.2.4 New Optional Conformance Tests for v1.2.1</a><ol>
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<li><a href="#`SchemaDefRequirement`">1.2.4.1 `SchemaDefRequirement`</a><ol>
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</ol><li><a href="#`ScatterFeatureRequirement`">1.2.4.2 `ScatterFeatureRequirement`</a><ol>
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</ol><li><a href="#`StepInputExpressionRequirement`">1.2.4.3 `StepInputExpressionRequirement`</a><ol>
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<li><a href="#SchemaDefRequirement_tests">1.2.4.1 SchemaDefRequirement tests</a><ol>
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</ol><li><a href="#ScatterFeatureRequirement_tests">1.2.4.2 ScatterFeatureRequirement tests</a><ol>
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</ol><li><a href="#StepInputExpressionRequirement_tests">1.2.4.3 StepInputExpressionRequirement tests</a><ol>
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</ol></li></ol></li></ol><li><a href="#Introduction_to_CWL_Workflow_standard_v1.2">1.3 Introduction to CWL Workflow standard v1.2</a><ol>
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</ol><li><a href="#Changelog">1.4 Changelog</a><ol>
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</ol><li><a href="#Purpose">1.5 Purpose</a><ol>
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<li><code>output_reference_workflow_input</code>: Test direct use of <code>Workflow</code> level
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input fields in the outputs.</li>
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</ul>
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<h3 id="New_Optional_Conformance_Tests_for_v1.2.1" class="section">1.2.4 New Optional Conformance Tests for v1.2.1 <a href="#New_Optional_Conformance_Tests_for_v1.2.1">&sect;</a></h3><h4 id="<code>SchemaDefRequirement</code>" class="section">1.2.4.1 <code>SchemaDefRequirement</code> <a href="#<code>SchemaDefRequirement</code>">&sect;</a></h4><ul>
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<h3 id="New_Optional_Conformance_Tests_for_v1.2.1" class="section">1.2.4 New Optional Conformance Tests for v1.2.1 <a href="#New_Optional_Conformance_Tests_for_v1.2.1">&sect;</a></h3><h4 id="SchemaDefRequirement_tests" class="section">1.2.4.1 SchemaDefRequirement tests <a href="#SchemaDefRequirement_tests">&sect;</a></h4><ul>
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<li><code>schemadef_types_with_import</code>: Test <code>SchemaDefRequirement</code> with a
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workflow, with the <code>$import</code> under types. It is similar to <code>schemadef-wf</code>,
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but the <code>$import</code> is different.</li>
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</ul>
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<h4 id="<code>ScatterFeatureRequirement</code>" class="section">1.2.4.2 <code>ScatterFeatureRequirement</code> <a href="#<code>ScatterFeatureRequirement</code>">&sect;</a></h4><ul>
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<h4 id="ScatterFeatureRequirement_tests" class="section">1.2.4.2 ScatterFeatureRequirement tests <a href="#ScatterFeatureRequirement_tests">&sect;</a></h4><ul>
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<li><code>simple_simple_scatter</code>: Two level nested scatter.</li>
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<li><code>dotproduct_simple_scatter</code>: Two level nested scatter: external
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dotproduct and internal simple.</li>
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<li><code>nested_crossproduct_nested_crossproduct_scatter</code>: Two level nested scatter:
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external nested_crossproduct and internal nested_crossproduct.</li>
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</ul>
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<h4 id="<code>StepInputExpressionRequirement</code>" class="section">1.2.4.3 <code>StepInputExpressionRequirement</code> <a href="#<code>StepInputExpressionRequirement</code>">&sect;</a></h4><ul>
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<h4 id="StepInputExpressionRequirement_tests" class="section">1.2.4.3 StepInputExpressionRequirement tests <a href="#StepInputExpressionRequirement_tests">&sect;</a></h4><ul>
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<li><code>default_with_falsey_value</code>: Confirms that "false"-like (but not 'null')
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values override any default.</li>
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