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Fix tests for when Apptainer/Singularity is available #7

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espenhgn opened this issue Oct 1, 2024 · 0 comments · Fixed by #8
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Fix tests for when Apptainer/Singularity is available #7

espenhgn opened this issue Oct 1, 2024 · 0 comments · Fixed by #8
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espenhgn commented Oct 1, 2024

Syntax like this is no longer an option:

singularity run containers/mtag.sif python --version
usage: mtag.py [-h] [--sumstats [{File1},{File2}...]]
               [--gencov_path FILE_PATH] [--residcov_path FILE_PATH]
...
mtag.py: error: unrecognized arguments: python --version
@espenhgn espenhgn self-assigned this Oct 1, 2024
espenhgn added a commit that referenced this issue Oct 1, 2024
@espenhgn
Fix tests for when Apptainer/Singularity is available
a882657 
Fixes #7
@espenhgn espenhgn mentioned this issue Oct 1, 2024
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espenhgn added a commit that referenced this issue Oct 1, 2024
@espenhgn
Fix tests for when Apptainer/Singularity is available (#8)
2624f64 
* Fix tests for when Apptainer/Singularity is available
Fixes #7

* check for apptainer runtime
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Fix tests for when Apptainer/Singularity is available comorment/mtag_container
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