From 456b953ff5db970e77404f46fde7db8e309ee166 Mon Sep 17 00:00:00 2001
From: Frank Bergmann <fbergman@caltech.edu>
Date: Fri, 26 May 2023 10:45:53 +0200
Subject: [PATCH]  - remove unnecessary file

---
 tests/Untitled.ipynb | 486 -------------------------------------------
 1 file changed, 486 deletions(-)
 delete mode 100644 tests/Untitled.ipynb

diff --git a/tests/Untitled.ipynb b/tests/Untitled.ipynb
deleted file mode 100644
index a46de99..0000000
--- a/tests/Untitled.ipynb
+++ /dev/null
@@ -1,486 +0,0 @@
-{
- "cells": [
-  {
-   "cell_type": "code",
-   "execution_count": 1,
-   "id": "d911d475",
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "import pandas as pd\n",
-    "import numpy as np\n"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 2,
-   "id": "3493dc7e",
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "df = pd.read_csv('simulation_log.tsv', sep='\\t')"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 6,
-   "id": "f6879589",
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "df[['measurement']] = np.log(df[['measurement']])"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 7,
-   "id": "2d009670",
-   "metadata": {},
-   "outputs": [
-    {
-     "data": {
-      "text/html": [
-       "<div>\n",
-       "<style scoped>\n",
-       "    .dataframe tbody tr th:only-of-type {\n",
-       "        vertical-align: middle;\n",
-       "    }\n",
-       "\n",
-       "    .dataframe tbody tr th {\n",
-       "        vertical-align: top;\n",
-       "    }\n",
-       "\n",
-       "    .dataframe thead th {\n",
-       "        text-align: right;\n",
-       "    }\n",
-       "</style>\n",
-       "<table border=\"1\" class=\"dataframe\">\n",
-       "  <thead>\n",
-       "    <tr style=\"text-align: right;\">\n",
-       "      <th></th>\n",
-       "      <th>observableId</th>\n",
-       "      <th>simulationConditionId</th>\n",
-       "      <th>time</th>\n",
-       "      <th>measurement</th>\n",
-       "    </tr>\n",
-       "  </thead>\n",
-       "  <tbody>\n",
-       "    <tr>\n",
-       "      <th>0</th>\n",
-       "      <td>observable_x_0ac</td>\n",
-       "      <td>condition</td>\n",
-       "      <td>inf</td>\n",
-       "      <td>-0.290686</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>1</th>\n",
-       "      <td>observable_x_0ac</td>\n",
-       "      <td>condition</td>\n",
-       "      <td>inf</td>\n",
-       "      <td>-0.289240</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>2</th>\n",
-       "      <td>observable_x_0ac</td>\n",
-       "      <td>condition</td>\n",
-       "      <td>inf</td>\n",
-       "      <td>-0.292469</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>3</th>\n",
-       "      <td>observable_x_0ac</td>\n",
-       "      <td>condition</td>\n",
-       "      <td>inf</td>\n",
-       "      <td>-0.293003</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>4</th>\n",
-       "      <td>observable_x_0ac</td>\n",
-       "      <td>condition</td>\n",
-       "      <td>inf</td>\n",
-       "      <td>-0.308323</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>...</th>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>247</th>\n",
-       "      <td>observable_x_k16</td>\n",
-       "      <td>condition</td>\n",
-       "      <td>inf</td>\n",
-       "      <td>-3.500572</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>248</th>\n",
-       "      <td>observable_x_k16</td>\n",
-       "      <td>condition</td>\n",
-       "      <td>inf</td>\n",
-       "      <td>-3.450204</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>249</th>\n",
-       "      <td>observable_x_k16</td>\n",
-       "      <td>condition</td>\n",
-       "      <td>inf</td>\n",
-       "      <td>-3.485566</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>250</th>\n",
-       "      <td>observable_x_k16</td>\n",
-       "      <td>condition</td>\n",
-       "      <td>inf</td>\n",
-       "      <td>-3.407775</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>251</th>\n",
-       "      <td>observable_x_k16</td>\n",
-       "      <td>condition</td>\n",
-       "      <td>inf</td>\n",
-       "      <td>-3.376356</td>\n",
-       "    </tr>\n",
-       "  </tbody>\n",
-       "</table>\n",
-       "<p>252 rows × 4 columns</p>\n",
-       "</div>"
-      ],
-      "text/plain": [
-       "         observableId simulationConditionId  time  measurement\n",
-       "0    observable_x_0ac             condition   inf    -0.290686\n",
-       "1    observable_x_0ac             condition   inf    -0.289240\n",
-       "2    observable_x_0ac             condition   inf    -0.292469\n",
-       "3    observable_x_0ac             condition   inf    -0.293003\n",
-       "4    observable_x_0ac             condition   inf    -0.308323\n",
-       "..                ...                   ...   ...          ...\n",
-       "247  observable_x_k16             condition   inf    -3.500572\n",
-       "248  observable_x_k16             condition   inf    -3.450204\n",
-       "249  observable_x_k16             condition   inf    -3.485566\n",
-       "250  observable_x_k16             condition   inf    -3.407775\n",
-       "251  observable_x_k16             condition   inf    -3.376356\n",
-       "\n",
-       "[252 rows x 4 columns]"
-      ]
-     },
-     "execution_count": 7,
-     "metadata": {},
-     "output_type": "execute_result"
-    }
-   ],
-   "source": [
-    "df\n"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 10,
-   "id": "a16a3664",
-   "metadata": {},
-   "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
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-      "observable_x_0ac\tcondition\tinf\t-0.2892399534518036\r\n",
-      "observable_x_0ac\tcondition\tinf\t-0.2924686850923775\r\n",
-      "observable_x_0ac\tcondition\tinf\t-0.29300322188975686\r\n",
-      "observable_x_0ac\tcondition\tinf\t-0.30832331727336115\r\n",
-      "observable_x_0ac\tcondition\tinf\t-0.29119711645359675\r\n",
-      "observable_x_0ac\tcondition\tinf\t-0.3403377659222368\r\n",
-      "observable_x_0ac\tcondition\tinf\t-0.35080928517152565\r\n",
-      "observable_x_0ac\tcondition\tinf\t-0.37522636814463395\r\n",
-      "observable_x_0ac\tcondition\tinf\t-0.3505352858430187\r\n",
-      "observable_x_0ac\tcondition\tinf\t-0.37437595177640176\r\n",
-      "observable_x_0ac\tcondition\tinf\t-0.32546263016690974\r\n",
-      "observable_x_0ac\tcondition\tinf\t-0.30842190276954606\r\n",
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-      "observable_x_0ac\tcondition\tinf\t-0.30543127058942804\r\n",
-      "observable_x_0ac\tcondition\tinf\t-0.3074746168227935\r\n",
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-      "observable_x_4ac\tcondition\tinf\t-5.700097422807713\r\n",
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-      "observable_x_4ac\tcondition\tinf\t-6.351232784635843\r\n",
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-      "observable_x_k05\tcondition\tinf\t-3.5073882186079803\r\n",
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-      "observable_x_k05k08k12\tcondition\tinf\t-5.613064249026995\r\n",
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-      "observable_x_k05k08k16\tcondition\tinf\t-6.891437638773955\r\n",
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-      "observable_x_k05k08k16\tcondition\tinf\t-6.7961427082148544\r\n",
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-      "observable_x_k05k12k16\tcondition\tinf\t-6.109725246827682\r\n",
-      "observable_x_k08\tcondition\tinf\t-3.5548251992057245\r\n",
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-      "observable_x_k08\tcondition\tinf\t-3.6209634443678516\r\n",
-      "observable_x_k08\tcondition\tinf\t-3.6683537706388316\r\n",
-      "observable_x_k08\tcondition\tinf\t-3.4998539888138276\r\n",
-      "observable_x_k08\tcondition\tinf\t-3.634227589044315\r\n",
-      "observable_x_k08\tcondition\tinf\t-3.4793790511420437\r\n",
-      "observable_x_k08\tcondition\tinf\t-3.7082667347984635\r\n",
-      "observable_x_k08\tcondition\tinf\t-3.4859674366551756\r\n",
-      "observable_x_k08k12\tcondition\tinf\t-4.816296324039756\r\n",
-      "observable_x_k08k12\tcondition\tinf\t-5.030372410838298\r\n",
-      "observable_x_k08k12\tcondition\tinf\t-5.029412798110899\r\n",
-      "observable_x_k08k12\tcondition\tinf\t-4.31409326506087\r\n",
-      "observable_x_k08k12\tcondition\tinf\t-4.409119407746343\r\n",
-      "observable_x_k08k12\tcondition\tinf\t-4.837791850542758\r\n",
-      "observable_x_k08k12\tcondition\tinf\t-5.216221402095803\r\n",
-      "observable_x_k08k12\tcondition\tinf\t-5.2358892707923355\r\n",
-      "observable_x_k08k12\tcondition\tinf\t-5.20854735974559\r\n",
-      "observable_x_k08k12\tcondition\tinf\t-4.594324661880589\r\n",
-      "observable_x_k08k12\tcondition\tinf\t-4.665090459665925\r\n",
-      "observable_x_k08k12\tcondition\tinf\t-5.109022662091535\r\n",
-      "observable_x_k08k12k16\tcondition\tinf\t-5.657405591537005\r\n",
-      "observable_x_k08k12k16\tcondition\tinf\t-6.127334122581325\r\n",
-      "observable_x_k08k12k16\tcondition\tinf\t-5.676472626601865\r\n",
-      "observable_x_k08k12k16\tcondition\tinf\t-5.685075447310525\r\n",
-      "observable_x_k08k12k16\tcondition\tinf\t-5.73923851668482\r\n",
-      "observable_x_k08k12k16\tcondition\tinf\t-5.658199677163967\r\n",
-      "observable_x_k08k12k16\tcondition\tinf\t-5.437895529811611\r\n",
-      "observable_x_k08k12k16\tcondition\tinf\t-5.428680867957001\r\n",
-      "observable_x_k08k12k16\tcondition\tinf\t-5.235278043646753\r\n",
-      "observable_x_k08k12k16\tcondition\tinf\t-5.572273590924627\r\n",
-      "observable_x_k08k12k16\tcondition\tinf\t-5.4440846851522915\r\n",
-      "observable_x_k08k12k16\tcondition\tinf\t-5.486664593281929\r\n",
-      "observable_x_k08k12k16\tcondition\tinf\t-5.596748928295046\r\n",
-      "observable_x_k08k12k16\tcondition\tinf\t-5.893425620993309\r\n",
-      "observable_x_k08k12k16\tcondition\tinf\t-5.740254662069308\r\n",
-      "observable_x_k08k12k16\tcondition\tinf\t-5.541296167190519\r\n",
-      "observable_x_k08k12k16\tcondition\tinf\t-6.059717178354641\r\n",
-      "observable_x_k08k12k16\tcondition\tinf\t-6.54759051156722\r\n",
-      "observable_x_k08k16\tcondition\tinf\t-5.565881175247555\r\n",
-      "observable_x_k08k16\tcondition\tinf\t-5.003913719576401\r\n",
-      "observable_x_k08k16\tcondition\tinf\t-5.197956056119271\r\n",
-      "observable_x_k08k16\tcondition\tinf\t-5.531509536545505\r\n",
-      "observable_x_k08k16\tcondition\tinf\t-6.582198182063932\r\n",
-      "observable_x_k08k16\tcondition\tinf\t-5.25469893370869\r\n",
-      "observable_x_k08k16\tcondition\tinf\t-5.014011858278367\r\n",
-      "observable_x_k08k16\tcondition\tinf\t-5.005498718915167\r\n",
-      "observable_x_k08k16\tcondition\tinf\t-4.87722002758911\r\n",
-      "observable_x_k08k16\tcondition\tinf\t-5.512122457331868\r\n",
-      "observable_x_k08k16\tcondition\tinf\t-6.661157422927763\r\n",
-      "observable_x_k08k16\tcondition\tinf\t-5.63216867679937\r\n",
-      "observable_x_k12\tcondition\tinf\t-2.6608167093474018\r\n",
-      "observable_x_k12\tcondition\tinf\t-2.7221753778547\r\n",
-      "observable_x_k12\tcondition\tinf\t-2.650257123620511\r\n",
-      "observable_x_k12\tcondition\tinf\t-2.622418762289464\r\n",
-      "observable_x_k12\tcondition\tinf\t-2.6314419555244504\r\n",
-      "observable_x_k12\tcondition\tinf\t-2.7199905522128707\r\n",
-      "observable_x_k12\tcondition\tinf\t-2.499270948930022\r\n",
-      "observable_x_k12\tcondition\tinf\t-2.52467410303241\r\n",
-      "observable_x_k12\tcondition\tinf\t-2.5766331221894783\r\n",
-      "observable_x_k12\tcondition\tinf\t-2.494461760406975\r\n",
-      "observable_x_k12\tcondition\tinf\t-2.4152909430232157\r\n",
-      "observable_x_k12\tcondition\tinf\t-2.5522719002832117\r\n",
-      "observable_x_k12\tcondition\tinf\t-2.5898131951725927\r\n",
-      "observable_x_k12\tcondition\tinf\t-2.468190975172467\r\n",
-      "observable_x_k12\tcondition\tinf\t-2.641812391916477\r\n",
-      "observable_x_k12\tcondition\tinf\t-2.602095727872111\r\n",
-      "observable_x_k12\tcondition\tinf\t-2.8600640363588727\r\n",
-      "observable_x_k12\tcondition\tinf\t-2.7745078810475126\r\n",
-      "observable_x_k12k16\tcondition\tinf\t-4.940913182569468\r\n",
-      "observable_x_k12k16\tcondition\tinf\t-4.999928125954319\r\n",
-      "observable_x_k12k16\tcondition\tinf\t-4.948521259652745\r\n",
-      "observable_x_k12k16\tcondition\tinf\t-4.960403797716749\r\n",
-      "observable_x_k12k16\tcondition\tinf\t-4.838409642375882\r\n",
-      "observable_x_k12k16\tcondition\tinf\t-4.794518339594086\r\n",
-      "observable_x_k12k16\tcondition\tinf\t-4.450134141069343\r\n",
-      "observable_x_k12k16\tcondition\tinf\t-4.781193824369052\r\n",
-      "observable_x_k12k16\tcondition\tinf\t-4.7429208902592235\r\n",
-      "observable_x_k12k16\tcondition\tinf\t-4.733518007986758\r\n",
-      "observable_x_k12k16\tcondition\tinf\t-4.6019574324121955\r\n",
-      "observable_x_k12k16\tcondition\tinf\t-4.890959304541467\r\n",
-      "observable_x_k12k16\tcondition\tinf\t-4.765065325341567\r\n",
-      "observable_x_k12k16\tcondition\tinf\t-4.805561493815936\r\n",
-      "observable_x_k12k16\tcondition\tinf\t-4.824618797009537\r\n",
-      "observable_x_k12k16\tcondition\tinf\t-4.7437152690369615\r\n",
-      "observable_x_k12k16\tcondition\tinf\t-4.974630747265814\r\n",
-      "observable_x_k12k16\tcondition\tinf\t-5.094762376483778\r\n",
-      "observable_x_k16\tcondition\tinf\t-3.3813837367796107\r\n",
-      "observable_x_k16\tcondition\tinf\t-3.29717180604042\r\n",
-      "observable_x_k16\tcondition\tinf\t-3.410591660041159\r\n",
-      "observable_x_k16\tcondition\tinf\t-3.4516324307633655\r\n",
-      "observable_x_k16\tcondition\tinf\t-3.401887362644296\r\n",
-      "observable_x_k16\tcondition\tinf\t-3.3486906410982966\r\n",
-      "observable_x_k16\tcondition\tinf\t-3.345038518873625\r\n",
-      "observable_x_k16\tcondition\tinf\t-3.285570495492995\r\n",
-      "observable_x_k16\tcondition\tinf\t-3.3452314280203477\r\n",
-      "observable_x_k16\tcondition\tinf\t-3.301249990361902\r\n",
-      "observable_x_k16\tcondition\tinf\t-3.209495693676679\r\n",
-      "observable_x_k16\tcondition\tinf\t-3.4783121120478713\r\n",
-      "observable_x_k16\tcondition\tinf\t-3.5732442202222177\r\n",
-      "observable_x_k16\tcondition\tinf\t-3.5005721576571136\r\n",
-      "observable_x_k16\tcondition\tinf\t-3.4502040481665266\r\n",
-      "observable_x_k16\tcondition\tinf\t-3.4855661146043553\r\n",
-      "observable_x_k16\tcondition\tinf\t-3.4077746857813893\r\n",
-      "observable_x_k16\tcondition\tinf\t-3.37635608158973\r\n"
-     ]
-    }
-   ],
-   "source": [
-    "!cat simulation_log.tsv"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 9,
-   "id": "c46c0782",
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "df.to_csv('simulation_log.tsv', index=None, sep='\\t')"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "3b161966",
-   "metadata": {},
-   "outputs": [],
-   "source": []
-  }
- ],
- "metadata": {
-  "kernelspec": {
-   "display_name": "Python 3 (ipykernel)",
-   "language": "python",
-   "name": "python3"
-  },
-  "language_info": {
-   "codemirror_mode": {
-    "name": "ipython",
-    "version": 3
-   },
-   "file_extension": ".py",
-   "mimetype": "text/x-python",
-   "name": "python",
-   "nbconvert_exporter": "python",
-   "pygments_lexer": "ipython3",
-   "version": "3.11.3"
-  }
- },
- "nbformat": 4,
- "nbformat_minor": 5
-}