Release 0.13

This release fixes a number of issues. Mainly, when getting / setting model elements, by passing in a boolean argument exact=True the name given has to match exactly. Additionally, new methods are available to remove all fit items, and experiments. A new get_value method retrieves values from reference names passed in.

Full Changelog: v0.12...v0.13

Release 0.12

This release adds members to retrieve all method names, and to convert between method names and their enum values if needed. Additionally the basic_only parameter on get_opt_settings can be passed along to retrieve advanced parameters.

Full Changelog: v0.11...v0.12

Release 0.11

This release fixes an issue in save_model_and_data so that absolute names for experiments are being used, thanks to Louis Becquey for reporting.

The parameter mapping of reaction parameters can now also be changed by set_reaction_parameters using the mapped_to argument.

Release 0.10

This release fixes an issue where when an experiment is added with a relative path, the file is later not found by COPASI (as it is then expected to be relative to the COPASI file, thanks to Louis Becquey for reporting.

Basico 0.9

This release fixes an issue, where the mapping of experimental data to global parameters would be invalid.

Release 0.8

This release fixes an issue, where an exception would occur on setting invalid scan items. This changes:

• get_scan_items: such that none existing values are not returned
• set_scan_items: when attempting to set none existing parameters, they are ignored

Full Changelog: v0.7...v0.8

Release 0.7

Another bug fix release, since the time symbol was not correctly translated into a time reference when manually creating reports.

Bugfix Release 0.6

The last release introduced a bug, where running time course simulations with a selection list of items to collect did not work as intended. This fixes the issue. There are also now examples on how to use basico with multiprocessing, or ipyparallel.

Full Changelog: v0.5...v0.6

Release BasiCO 0.5

This release adds the capability to run optimizations in basico:

• simple optimization example

Also it should be easier to assign report filenames to tasks now, and additionally the scheduled key is used consistently.

Full Changelog: v0.4...v0.5

Release 0.4

BasiCO contains a number of pure python scripts, that make it easier to work with the COPASI API.

This release contains a number of bug fixes along with the following new features:

• editing of report definitions
• modification of the COPASI scan task
• returning of statistics for parameter estimation runs
• filtering the function database so that only functions suitable for a given reaction are returned.

Full Changelog: v0.3...v0.4