diff --git a/docs/tutorials/spectral_fits/continuum_fit/grb/SpectralFit_GRB.ipynb b/docs/tutorials/spectral_fits/continuum_fit/grb/SpectralFit_GRB.ipynb index 5626f64b..1bf90456 100644 --- a/docs/tutorials/spectral_fits/continuum_fit/grb/SpectralFit_GRB.ipynb +++ b/docs/tutorials/spectral_fits/continuum_fit/grb/SpectralFit_GRB.ipynb @@ -72,12 +72,12 @@ { "data": { "text/html": [ - "
12:06:30 WARNING   The naima package is not available. Models that depend on it will not be         functions.py:48\n",
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        "                  available                                                                                        \n",
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+       "\u001b[38;5;46m08:46:50\u001b[0m\u001b[38;5;46m \u001b[0m\u001b[38;5;134mWARNING \u001b[0m \u001b[1;38;5;251m The naima package is not available. Models that depend on it will not be        \u001b[0m\u001b[1;38;5;251m \u001b[0m\u001b]8;id=713174;file:///discover/nobackup/ckarwin/Software/COSIPY/lib/python3.10/site-packages/astromodels/functions/functions_1D/functions.py\u001b\\\u001b[2mfunctions.py\u001b[0m\u001b]8;;\u001b\\\u001b[2m:\u001b[0m\u001b]8;id=413436;file:///discover/nobackup/ckarwin/Software/COSIPY/lib/python3.10/site-packages/astromodels/functions/functions_1D/functions.py#48\u001b\\\u001b[2m48\u001b[0m\u001b]8;;\u001b\\\n",
        "\u001b[38;5;46m         \u001b[0m         \u001b[1;38;5;251mavailable                                                                        \u001b[0m\u001b[1;38;5;251m \u001b[0m\u001b[2m               \u001b[0m\n"
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12:06:31 WARNING   The ebltable package is not available. Models that depend on it will not be     absorption.py:33\n",
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        "                  available                                                                                        \n",
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12:06:32 INFO      Starting 3ML!                                                                     __init__.py:39\n",
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        "                  require the C/C++ interface (currently HAWC)                                                     \n",
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+       "\u001b[38;5;46m08:46:56\u001b[0m\u001b[38;5;46m \u001b[0m\u001b[38;5;134mWARNING \u001b[0m \u001b[1;38;5;251m The cthreeML package is not installed. You will not be able to use plugins which \u001b[0m\u001b[1;38;5;251m \u001b[0m\u001b]8;id=590709;file:///discover/nobackup/ckarwin/Software/COSIPY/lib/python3.10/site-packages/threeML/__init__.py\u001b\\\u001b[2m__init__.py\u001b[0m\u001b]8;;\u001b\\\u001b[2m:\u001b[0m\u001b]8;id=892582;file:///discover/nobackup/ckarwin/Software/COSIPY/lib/python3.10/site-packages/threeML/__init__.py#94\u001b\\\u001b[2m94\u001b[0m\u001b]8;;\u001b\\\n",
        "\u001b[38;5;46m         \u001b[0m         \u001b[1;38;5;251mrequire the C/C++ interface \u001b[0m\u001b[1;38;5;251m(\u001b[0m\u001b[1;38;5;251mcurrently HAWC\u001b[0m\u001b[1;38;5;251m)\u001b[0m\u001b[1;38;5;251m                                      \u001b[0m\u001b[1;38;5;251m \u001b[0m\u001b[2m              \u001b[0m\n"
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12:06:37 WARNING   No fermitools installed                                              lat_transient_builder.py:44\n",
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+       "\u001b[38;5;46m08:47:00\u001b[0m\u001b[38;5;46m \u001b[0m\u001b[38;5;134mWARNING \u001b[0m \u001b[1;38;5;251m No fermitools installed                                             \u001b[0m\u001b[1;38;5;251m \u001b[0m\u001b]8;id=192331;file:///discover/nobackup/ckarwin/Software/COSIPY/lib/python3.10/site-packages/threeML/utils/data_builders/fermi/lat_transient_builder.py\u001b\\\u001b[2mlat_transient_builder.py\u001b[0m\u001b]8;;\u001b\\\u001b[2m:\u001b[0m\u001b]8;id=693460;file:///discover/nobackup/ckarwin/Software/COSIPY/lib/python3.10/site-packages/threeML/utils/data_builders/fermi/lat_transient_builder.py#44\u001b\\\u001b[2m44\u001b[0m\u001b]8;;\u001b\\\n"
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@@ -279,12 +279,12 @@
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12:06:37 WARNING   Env. variable OMP_NUM_THREADS is not set. Please set it to 1 for optimal         __init__.py:387\n",
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        "                  performances in 3ML                                                                              \n",
        "
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+       "\u001b[38;5;46m08:47:00\u001b[0m\u001b[38;5;46m \u001b[0m\u001b[38;5;134mWARNING \u001b[0m \u001b[1;38;5;251m Env. variable OMP_NUM_THREADS is not set. Please set it to \u001b[0m\u001b[1;37m1\u001b[0m\u001b[1;38;5;251m for optimal        \u001b[0m\u001b[1;38;5;251m \u001b[0m\u001b]8;id=722668;file:///discover/nobackup/ckarwin/Software/COSIPY/lib/python3.10/site-packages/threeML/__init__.py\u001b\\\u001b[2m__init__.py\u001b[0m\u001b]8;;\u001b\\\u001b[2m:\u001b[0m\u001b]8;id=575708;file:///discover/nobackup/ckarwin/Software/COSIPY/lib/python3.10/site-packages/threeML/__init__.py#387\u001b\\\u001b[2m387\u001b[0m\u001b]8;;\u001b\\\n",
        "\u001b[38;5;46m         \u001b[0m         \u001b[1;38;5;251mperformances in 3ML                                                              \u001b[0m\u001b[1;38;5;251m \u001b[0m\u001b[2m               \u001b[0m\n"
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+       "\u001b[38;5;46m        \u001b[0m\u001b[38;5;46m \u001b[0m\u001b[38;5;134mWARNING \u001b[0m \u001b[1;38;5;251m Env. variable MKL_NUM_THREADS is not set. Please set it to \u001b[0m\u001b[1;37m1\u001b[0m\u001b[1;38;5;251m for optimal        \u001b[0m\u001b[1;38;5;251m \u001b[0m\u001b]8;id=592563;file:///discover/nobackup/ckarwin/Software/COSIPY/lib/python3.10/site-packages/threeML/__init__.py\u001b\\\u001b[2m__init__.py\u001b[0m\u001b]8;;\u001b\\\u001b[2m:\u001b[0m\u001b]8;id=331679;file:///discover/nobackup/ckarwin/Software/COSIPY/lib/python3.10/site-packages/threeML/__init__.py#387\u001b\\\u001b[2m387\u001b[0m\u001b]8;;\u001b\\\n",
        "\u001b[38;5;46m         \u001b[0m         \u001b[1;38;5;251mperformances in 3ML                                                              \u001b[0m\u001b[1;38;5;251m \u001b[0m\u001b[2m               \u001b[0m\n"
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12:15:15 INFO      set the minimizer to minuit                                             joint_likelihood.py:1045\n",
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+       "\u001b[38;5;46m08:49:04\u001b[0m\u001b[38;5;46m \u001b[0m\u001b[38;5;49mINFO    \u001b[0m \u001b[1;38;5;251m set the minimizer to minuit                                            \u001b[0m\u001b[1;38;5;251m \u001b[0m\u001b]8;id=947353;file:///discover/nobackup/ckarwin/Software/COSIPY/lib/python3.10/site-packages/threeML/classicMLE/joint_likelihood.py\u001b\\\u001b[2mjoint_likelihood.py\u001b[0m\u001b]8;;\u001b\\\u001b[2m:\u001b[0m\u001b]8;id=786599;file:///discover/nobackup/ckarwin/Software/COSIPY/lib/python3.10/site-packages/threeML/classicMLE/joint_likelihood.py#1045\u001b\\\u001b[2m1045\u001b[0m\u001b]8;;\u001b\\\n"
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@@ -708,12 +707,12 @@
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12:16:19 WARNING   get_number_of_data_points not implemented, values for statistical        plugin_prototype.py:130\n",
+       "
08:49:30 WARNING   get_number_of_data_points not implemented, values for statistical        plugin_prototype.py:130\n",
        "                  measurements such as AIC or BIC are unreliable                                                   \n",
        "
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-       "\u001b[38;5;46m12:16:19\u001b[0m\u001b[38;5;46m \u001b[0m\u001b[38;5;134mWARNING \u001b[0m \u001b[1;38;5;251m get_number_of_data_points not implemented, values for statistical       \u001b[0m\u001b[1;38;5;251m \u001b[0m\u001b]8;id=535176;file:///discover/nobackup/ckarwin/Software/COSIPY/lib/python3.10/site-packages/threeML/plugin_prototype.py\u001b\\\u001b[2mplugin_prototype.py\u001b[0m\u001b]8;;\u001b\\\u001b[2m:\u001b[0m\u001b]8;id=502302;file:///discover/nobackup/ckarwin/Software/COSIPY/lib/python3.10/site-packages/threeML/plugin_prototype.py#130\u001b\\\u001b[2m130\u001b[0m\u001b]8;;\u001b\\\n",
+       "\u001b[38;5;46m08:49:30\u001b[0m\u001b[38;5;46m \u001b[0m\u001b[38;5;134mWARNING \u001b[0m \u001b[1;38;5;251m get_number_of_data_points not implemented, values for statistical       \u001b[0m\u001b[1;38;5;251m \u001b[0m\u001b]8;id=789908;file:///discover/nobackup/ckarwin/Software/COSIPY/lib/python3.10/site-packages/threeML/plugin_prototype.py\u001b\\\u001b[2mplugin_prototype.py\u001b[0m\u001b]8;;\u001b\\\u001b[2m:\u001b[0m\u001b]8;id=222980;file:///discover/nobackup/ckarwin/Software/COSIPY/lib/python3.10/site-packages/threeML/plugin_prototype.py#130\u001b\\\u001b[2m130\u001b[0m\u001b]8;;\u001b\\\n",
        "\u001b[38;5;46m         \u001b[0m         \u001b[1;38;5;251mmeasurements such as AIC or BIC are unreliable                           \u001b[0m\u001b[1;38;5;251m \u001b[0m\u001b[2m                       \u001b[0m\n"
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        "  \n",
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@@ -954,11 +953,11 @@
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@@ -966,8 +965,8 @@
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+       "BIC          85840.098676"
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@@ -977,24 +976,24 @@
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-       " source.spectrum.main.Band.K        0.030988       -0.001991        0.002072   \n",
-       " source.spectrum.main.Band.alpha   -0.276759       -0.050823        0.049727   \n",
-       " source.spectrum.main.Band.xp     474.668373       -4.924520        5.001136   \n",
-       " source.spectrum.main.Band.beta    -6.757898       -1.224829        1.186228   \n",
-       " background_cosi                    0.164958       -0.012051        0.012140   \n",
+       " source.spectrum.main.Band.K        0.030997       -0.002034        0.002123   \n",
+       " source.spectrum.main.Band.alpha   -0.276547       -0.052063        0.049971   \n",
+       " source.spectrum.main.Band.xp     474.654036       -4.933778        4.828668   \n",
+       " source.spectrum.main.Band.beta    -6.755004       -1.205494        1.231109   \n",
+       " background_cosi                    0.164940       -0.012464        0.012279   \n",
        " \n",
        "                                     error             unit  \n",
-       " source.spectrum.main.Band.K      0.002032  1 / (keV s cm2)  \n",
-       " source.spectrum.main.Band.alpha  0.050275                   \n",
-       " source.spectrum.main.Band.xp     4.962828              keV  \n",
-       " source.spectrum.main.Band.beta   1.205529                   \n",
-       " background_cosi                  0.012096                   ,\n",
+       " source.spectrum.main.Band.K      0.002079  1 / (keV s cm2)  \n",
+       " source.spectrum.main.Band.alpha  0.051017                   \n",
+       " source.spectrum.main.Band.xp     4.881223              keV  \n",
+       " source.spectrum.main.Band.beta   1.218301                   \n",
+       " background_cosi                  0.012371                   ,\n",
        "        -log(likelihood)\n",
-       " cosi       42920.049339\n",
-       " total      42920.049339)"
+       " cosi       42920.049338\n",
+       " total      42920.049338)"
       ]
      },
-     "execution_count": 11,
+     "execution_count": 12,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -1025,7 +1024,7 @@
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-   "execution_count": 12,
+   "execution_count": 13,
    "id": "02e57ec8-4459-4f99-b62f-73a63aba83f3",
    "metadata": {},
    "outputs": [],
@@ -1062,7 +1061,7 @@
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   {
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-   "execution_count": 13,
+   "execution_count": 14,
    "id": "4e25c609-e754-43b8-8ea6-0a0a90811cda",
    "metadata": {
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@@ -1177,19 +1176,19 @@
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@@ -1240,11 +1239,11 @@
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@@ -1252,8 +1251,8 @@
       ],
       "text/plain": [
        "       -log(likelihood)\n",
-       "cosi       42920.049339\n",
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+       "cosi       42920.049338\n",
+       "total      42920.049338"
       ]
      },
      "metadata": {},
@@ -1303,11 +1302,11 @@
        "  \n",
        "    \n",
        "      AIC\n",
-       "      85838.098678\n",
+       "      85838.098676\n",
        "    \n",
        "    \n",
        "      BIC\n",
-       "      85840.098678\n",
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        "\n",
@@ -1315,8 +1314,8 @@
       ],
       "text/plain": [
        "     statistical measures\n",
-       "AIC          85838.098678\n",
-       "BIC          85840.098678"
+       "AIC          85838.098676\n",
+       "BIC          85840.098676"
       ]
      },
      "metadata": {},
@@ -1348,28 +1347,28 @@
       "      * main:\n",
       "        * Band:\n",
       "          * K:\n",
-      "            * value: 0.03098812082120686\n",
+      "            * value: 0.03099749659547262\n",
       "            * desc: Differential flux at the pivot energy\n",
       "            * min_value: 1.0e-50\n",
       "            * max_value: null\n",
       "            * unit: keV-1 s-1 cm-2\n",
       "            * is_normalization: true\n",
       "          * alpha:\n",
-      "            * value: -0.27675895447494075\n",
+      "            * value: -0.2765469834147527\n",
       "            * desc: low-energy photon index\n",
       "            * min_value: -1.5\n",
       "            * max_value: 3.0\n",
       "            * unit: ''\n",
       "            * is_normalization: false\n",
       "          * xp:\n",
-      "            * value: 474.66837288907766\n",
+      "            * value: 474.6540362662719\n",
       "            * desc: peak in the x * x * N (nuFnu if x is a energy)\n",
       "            * min_value: 10.0\n",
       "            * max_value: null\n",
       "            * unit: keV\n",
       "            * is_normalization: false\n",
       "          * beta:\n",
-      "            * value: -6.757897666561581\n",
+      "            * value: -6.755004044507031\n",
       "            * desc: high-energy photon index\n",
       "            * min_value: -15.0\n",
       "            * max_value: -1.6\n",
@@ -1411,7 +1410,7 @@
   },
   {
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-   "execution_count": 14,
+   "execution_count": null,
    "id": "cc7d6f50-06cd-450a-83d9-115b67d83b30",
    "metadata": {},
    "outputs": [],