[ENH] implement one-way ANOVA at group level to compare groups #1044
Workflow file for this run
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--- | |
name: tests matlab | |
# Uses the cron schedule for github actions | |
# | |
# https://docs.github.com/en/free-pro-team@latest/actions/reference/events-that-trigger-workflows#scheduled-events | |
# | |
# ┌───────────── minute (0 - 59) | |
# │ ┌───────────── hour (0 - 23) | |
# │ │ ┌───────────── day of the month (1 - 31) | |
# │ │ │ ┌───────────── month (1 - 12 or JAN-DEC) | |
# │ │ │ │ ┌───────────── day of the week (0 - 6 or SUN-SAT) | |
# │ │ │ │ │ | |
# │ │ │ │ │ | |
# │ │ │ │ │ | |
# * * * * * | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
on: | |
push: | |
branches: [main] | |
pull_request: | |
branches: [main] | |
schedule: | |
- cron: 0 0 1,15 * * | |
# Allows you to run this workflow manually from the Actions tab | |
workflow_dispatch: | |
jobs: | |
tests: | |
if: github.repository_owner == 'cpp-lln-lab' | |
strategy: | |
matrix: | |
test_type: [system] | |
script: [moae, facerep, fmriprep] | |
os: [ubuntu-latest, macos-13] | |
matlab: [R2023b] | |
include: | |
# only run bms on ubuntu because of datalad setup | |
- test_type: system | |
os: ubuntu-latest | |
matlab: R2023b | |
script: bms | |
- test_type: unit | |
os: ubuntu-latest | |
matlab: R2023b | |
mode: fast | |
- test_type: unit | |
os: macos-13 | |
matlab: R2023b | |
mode: fast | |
- test_type: unit | |
os: ubuntu-latest | |
matlab: R2023b | |
mode: slow | |
- test_type: unit | |
os: macos-13 | |
matlab: R2023b | |
mode: slow | |
- test_type: unit | |
os: macos-13 | |
matlab: R2023b | |
mode: fast | |
fail-fast: false | |
runs-on: ${{ matrix.os }} | |
steps: | |
- name: ${{ matrix.test_type }} test | |
if: matrix.test_type == 'system' | |
run: echo ${{ matrix.test_type }} test ${{ matrix.script }} | |
- name: Install Node | |
uses: actions/setup-node@v4 | |
with: | |
node-version: 18 | |
- name: Install python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: '3.11' | |
- name: Install dependencies | |
if: matrix.os == 'ubuntu-latest' | |
run: | | |
sudo apt-get -y -qq update | |
sudo apt-get -y install unzip wget git-annex | |
python -m pip install --upgrade pip setuptools | |
pip install datalad | |
- name: Clone bidspm | |
uses: actions/checkout@v4 | |
with: | |
submodules: recursive | |
fetch-depth: 0 | |
- name: Install validators | |
run: make install | |
- name: Install SPM | |
run: | | |
git clone https://github.com/spm/spm12.git --depth 1 | |
- name: Get moae fmriprep data from OSF | |
run: | | |
mkdir -p demos/MoAE/inputs/ | |
cd demos/MoAE/inputs/ | |
wget https://osf.io/vufjs/download | |
unzip download | |
mv moae_fmriprep fmriprep | |
- name: Prepare test data unix | |
run: | | |
cd tests | |
make data | |
- name: Get data for BMS | |
if: matrix.script == 'bms' | |
run: make -C demos/bayes data_ds000114 | |
- name: Install Moxunit and MOcov | |
run: | | |
git clone https://github.com/MOxUnit/MOxUnit.git --depth 1 | |
git clone https://github.com/MOcov/MOcov.git --depth 1 | |
- name: Install MATLAB | |
uses: matlab-actions/[email protected] | |
with: | |
release: ${{ matrix.matlab }} | |
- name: Run fast unit tests MATLAB | |
if: matrix.test_type == 'unit' && matrix.mode == 'fast' | |
uses: matlab-actions/[email protected] | |
with: | |
command: cd(fullfile(getenv('GITHUB_WORKSPACE'), '.github', 'workflows')); run tests_matlab; | |
- name: Run slow unit tests MATLAB | |
if: matrix.test_type == 'unit' && matrix.mode == 'slow' | |
uses: matlab-actions/[email protected] | |
with: | |
command: cd(fullfile(getenv('GITHUB_WORKSPACE'), '.github', 'workflows')); global SLOW; SLOW=true; run tests_matlab; | |
- name: Code coverage matlab | |
if: matrix.test_type == 'unit' | |
uses: codecov/codecov-action@v4 | |
with: | |
file: coverage.xml | |
flags: ${{ matrix.os }}_matlab-${{ matrix.matlab }}_${{ matrix.mode }} | |
name: codecov-matlab | |
fail_ci_if_error: false | |
# token: ${{ secrets.CODECOV_TOKEN }} # not required but might help API rate limits | |
- name: Run system tests MATLAB ${{ matrix.script }} | |
if: matrix.test_type == 'system' | |
uses: matlab-actions/[email protected] | |
with: | |
command: cd(fullfile(getenv('GITHUB_WORKSPACE'), '.github', 'workflows')); run system_tests_${{ matrix.script }}; |