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tests_windows.yml
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---
name: tests windows
# Uses the cron schedule for github actions
#
# https://docs.github.com/en/free-pro-team@latest/actions/reference/events-that-trigger-workflows#scheduled-events
#
# ┌───────────── minute (0 - 59)
# │ ┌───────────── hour (0 - 23)
# │ │ ┌───────────── day of the month (1 - 31)
# │ │ │ ┌───────────── month (1 - 12 or JAN-DEC)
# │ │ │ │ ┌───────────── day of the week (0 - 6 or SUN-SAT)
# │ │ │ │ │
# │ │ │ │ │
# │ │ │ │ │
# * * * * *
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
on:
push:
branches: [main]
pull_request:
branches: [main]
schedule:
- cron: 0 0 1,15 * *
# Allows you to run this workflow manually from the Actions tab
workflow_dispatch:
jobs:
tests_windows:
if: github.repository_owner == 'cpp-lln-lab'
strategy:
matrix:
test_type: [system]
script: [moae, fmriprep]
os: [windows-latest]
matlab: [R2023b]
include:
- test_type: unit
os: windows-latest
matlab: R2023b
mode: fast
- test_type: unit
os: windows-latest
matlab: R2023b
mode: slow
fail-fast: false
runs-on: ${{ matrix.os }}
steps:
- name: ${{ matrix.test_type }} test
if: matrix.test_type == 'system'
run: echo ${{ matrix.test_type }} test ${{ matrix.script }}
- name: Install Deno
uses: denoland/setup-deno@v1
with:
deno-version: v1.x
- name: Install python
uses: actions/setup-python@v5
with:
python-version: '3.11'
- name: Clone bidspm
uses: actions/checkout@v4
with:
submodules: recursive
fetch-depth: 0
- name: Install validators
run: make install
- name: Install SPM
run: |
git clone https://github.com/spm/spm12.git --depth 1
- name: Get moae fmriprep data from OSF
run: |
New-Item -ItemType Directory -Path ".\demos\MoAE\inputs\" -Force
Set-Location -Path ".\demos\MoAE\inputs\"
Invoke-WebRequest -Uri "https://osf.io/vufjs/download" -OutFile "download"
Expand-Archive -Path ".\download" -DestinationPath ".\"
Rename-Item -Path ".\moae_fmriprep" -NewName "fmriprep"
- name: Prepare test data
run: |
cd tests
make create_dummy_dataset
make bids_examples
Invoke-WebRequest -Uri "https://files.de-1.osf.io/v1/resources/3vufp/providers/osfstorage/62ab741be6f3ec09a7e48d13/?zip=" -OutFile "moae_spm12.zip"
New-Item -ItemType Directory -Path "data/MoAE/derivatives/spm12" -Force
Expand-Archive -Path "./moae_spm12.zip" -DestinationPath "./data/MoAE/derivatives/spm12"
- name: Install Moxunit and MOcov
run: |
git clone https://github.com/MOxUnit/MOxUnit.git --depth 1
git clone https://github.com/MOcov/MOcov.git --depth 1
- name: Install MATLAB
uses: matlab-actions/[email protected]
with:
release: ${{ matrix.matlab }}
- name: Run fast unit tests MATLAB
if: matrix.test_type == 'unit' && matrix.mode == 'fast'
uses: matlab-actions/[email protected]
with:
command: cd(fullfile(getenv('GITHUB_WORKSPACE'), '.github', 'workflows')); run tests_matlab;
- name: Run slow unit tests MATLAB
if: matrix.test_type == 'unit' && matrix.mode == 'slow'
uses: matlab-actions/[email protected]
with:
command: cd(fullfile(getenv('GITHUB_WORKSPACE'), '.github', 'workflows')); global SLOW; SLOW=true; run tests_matlab;
- name: Code coverage matlab
if: matrix.test_type == 'unit'
uses: codecov/codecov-action@v4
with:
file: coverage.xml
flags: ${{ matrix.os }}_matlab-${{ matrix.matlab }}_${{ matrix.mode }}
name: codecov-matlab
fail_ci_if_error: false
# token: ${{ secrets.CODECOV_TOKEN }}
- name: Run system tests MATLAB ${{ matrix.script }}
if: matrix.test_type == 'system'
uses: matlab-actions/[email protected]
with:
command: cd(fullfile(getenv('GITHUB_WORKSPACE'), '.github', 'workflows')); run system_tests_${{ matrix.script }};