Fix v2016 markdown

input/ignoreWarnings.txt

@@ -107,11 +107,4 @@ WARNING: Unable to find ImplementationGuide.definition.resource.description for
 
 # type codeable concept with reference to system http://www.ama-assn.org/go/cpt not validated
 INFORMATION: Encounter/cancer-diagnosis: Encounter.type[0].coding[0]: Code System URI 'http://www.ama-assn.org/go/cpt' is unknown so the code cannot be validated
-INFORMATION: Encounter/oncologist-participant: Encounter.type[0].coding[0]: Code System URI 'http://www.ama-assn.org/go/cpt' is unknown so the code cannot be validated
-
-# Markdown warning on config text passed in
-INFORMATION: ValueSet/non-synthetic-opioid-medications: ValueSet.extension[0].value.ofType(markdown): The string value contains text that looks like embedded HTML tags. If this content is rendered to HTML without appropriate post-processing, it may be a security risk
-INFORMATION: ValueSet/opioid-analgesics-with-ambulatory-misuse-potential: ValueSet.extension[0].value.ofType(markdown): The string value contains text that looks like embedded HTML tags. If this content is rendered to HTML without appropriate post-processing, it may be a security risk
-INFORMATION: ValueSet/benzodiazepine-medications: ValueSet.extension[0].value.ofType(markdown): The string value contains text that looks like embedded HTML tags. If this content is rendered to HTML without appropriate post-processing, it may be a security risk
-INFORMATION: ValueSet/fentanyl-type-medications: ValueSet.extension[0].value.ofType(markdown): The string value contains text that looks like embedded HTML tags. If this content is rendered to HTML without appropriate post-processing, it may be a security risk
-
+INFORMATION: Encounter/oncologist-participant: Encounter.type[0].coding[0]: Code System URI 'http://www.ama-assn.org/go/cpt' is unknown so the code cannot be validated

input/vocabulary/valueset/valueset-benzodiazepine-medications.json

@@ -6,7 +6,7 @@
   },
   "extension": [ {
     "url": "http://hl7.org/fhir/StructureDefinition/valueset-rules-text",
-    "valueMarkdown": "[https://mor.nlm.nih.gov/RxMix/](https://mor.nlm.nih.gov/RxMix/) Script:  <br /> - Step 1a ?Create Batch text input file (SCT-benzo.txt) with following SCT identifier (for the concept \"Product containing benzodiazepine (product)\") as an input within the file: ?16047007 <br /> - Step 1b?Submit batch job using the above SCT-benzo.txt file to following workflow by uploading file (SCT-benzo.config) with the following in the file: `<WFE><filteredOutputs>RXCUI|name|term_type</filteredOutputs><input>NOINPUT</input><FS><service>NOINPUT</service><function>findClassById</function><level>0</level><paramSize>1</paramSize><param order ='0'>?</param></FS><FS><service>NOINPUT</service><function>getClassMembers</function><level>1</level><paramSize>5</paramSize><param order ='0'>?</param><param order ='1'>SNOMEDCT</param><param order ='2'>isa_structure</param><param order ='3'>0</param><param order ='4'>IN,MIN,PIN</param></FS><FS><service>NOINPUT</service><function>getRelatedByType</function><level>2</level><paramSize>2</paramSize><param order ='0'>?</param><param order ='1'>BPCK,GPCK,SBD,SCD</param></FS></WFE>` <br /> ?This will produce a result file with all benzodiazepine clinical drugs included."
+    "valueMarkdown": "[https://mor.nlm.nih.gov/RxMix/](https://mor.nlm.nih.gov/RxMix/) Script:  /&lt;br\\s*\\/&gt; - Step 1a ?Create Batch text input file (SCT-benzo.txt) with following SCT identifier (for the concept \"Product containing benzodiazepine (product)\") as an input within the file: ?16047007 /&lt;br\\s*\\/&gt; - Step 1b?Submit batch job using the above SCT-benzo.txt file to following workflow by uploading file (SCT-benzo.config) with the following in the file: `/&ltWFE\\s*\\/&gt;/&ltfilteredOutputs\\s*\\/&gt;RXCUI|name|term_type/&lt/filteredOutputs\\s*\\/&gt;/&ltinput\\s*\\/&gt;NOINPUT/&lt/input\\s*\\/&gt;/&ltFS\\s*\\/&gt;/&ltservice\\s*\\/&gt;NOINPUT/&lt/service\\s*\\/&gt;/&ltfunction\\s*\\/&gt;findClassById/&lt/function\\s*\\/&gt;/&ltlevel\\s*\\/&gt;0/&lt/level\\s*\\/&gt;/&ltparamSize\\s*\\/&gt;1/&lt/paramSize\\s*\\/&gt;/&ltparam order ='0'\\s*\\/&gt;?/&lt/param\\s*\\/&gt;/&lt/FS\\s*\\/&gt;/&ltFS\\s*\\/&gt;/&ltservice\\s*\\/&gt;NOINPUT/&lt/service\\s*\\/&gt;/&ltfunction\\s*\\/&gt;getClassMembers/&lt/function\\s*\\/&gt;/&ltlevel\\s*\\/&gt;1/&lt/level\\s*\\/&gt;/&ltparamSize\\s*\\/&gt;5/&lt/paramSize\\s*\\/&gt;/&ltparam order ='0'\\s*\\/&gt;?/&lt/param\\s*\\/&gt;/&ltparam order ='1'\\s*\\/&gt;SNOMEDCT/&lt/param\\s*\\/&gt;/&ltparam order ='2'\\s*\\/&gt;isa_structure/&lt/param\\s*\\/&gt;/&ltparam order ='3'\\s*\\/&gt;0/&lt/param\\s*\\/&gt;/&ltparam order ='4'\\s*\\/&gt;IN,MIN,PIN/&lt/param\\s*\\/&gt;/&lt/FS\\s*\\/&gt;/&ltFS\\s*\\/&gt;/&ltservice\\s*\\/&gt;NOINPUT/&lt/service\\s*\\/&gt;/&ltfunction\\s*\\/&gt;getRelatedByType/&lt/function\\s*\\/&gt;/&ltlevel\\s*\\/&gt;2/&lt/level\\s*\\/&gt;/&ltparamSize\\s*\\/&gt;2/&lt/paramSize\\s*\\/&gt;/&ltparam order ='0'\\s*\\/&gt;?/&lt/param\\s*\\/&gt;/&ltparam order ='1'\\s*\\/&gt;BPCK,GPCK,SBD,SCD/&lt/param\\s*\\/&gt;/&lt/FS\\s*\\/&gt;/&lt/WFE\\s*\\/&gt;` /&lt;br\\s*\\/&gt; ?This will produce a result file with all benzodiazepine clinical drugs included."
   }, {
     "url": "http://fhir.org/guides/cdc/opioid-cds/StructureDefinition/cdc-valueset-clinical-focus",
     "valueString": "All benzodiazepine clinical drugs"

input/vocabulary/valueset/valueset-fentanyl-type-medications.json

@@ -6,7 +6,7 @@
   },
   "extension": [ {
     "url": "http://hl7.org/fhir/StructureDefinition/valueset-rules-text",
-    "valueMarkdown": "[https://mor.nlm.nih.gov/RxMix/](https://mor.nlm.nih.gov/RxMix/) Script: <br /> - Step 1 Upload to RxMix a workflow config file named `GetRelatedByType.config` containing the following workflow text: `<WFE><filteredOutputs>RXCUI|name|term_type</filteredOutputs><input>NOINPUT</input><FS><service>NOINPUT</service><function>getRelatedByType</function><level>0</level><paramSize>2</paramSize><param order ='0'>?</param><param order ='1'>BPCK,GPCK,SBD,SCD</param></FS></WFE>` <br /> - Step 2 Create Batch text input file (Ingredients.txt) with following RxNorm Fentanyl-type ingredient codes representing fentanyl, sufentanil, alfentanil, remifentanil as an input within the file:?4337?56795?480?73032 <br /> - Step 3 Upload the batch text input file Ingredients.txt created in step 2. <br /> - Step 4 Submit the batch which will run the workflow using the input codes to generate a combined set of all the concepts needed."
+    "valueMarkdown": "[https://mor.nlm.nih.gov/RxMix/](https://mor.nlm.nih.gov/RxMix/) Script: /&lt;br\\s*\\/&gt; - Step 1 Upload to RxMix a workflow config file named `GetRelatedByType.config` containing the following workflow text: `/&lt;WFE\\s*\\/&gt;/&lt;filteredOutputs\\s*\\/&gt;RXCUI|name|term_type/&lt;/filteredOutputs\\s*\\/&gt;/&lt;input\\s*\\/&gt;NOINPUT/&lt;/input\\s*\\/&gt;/&lt;FS\\s*\\/&gt;/&lt;service\\s*\\/&gt;NOINPUT/&lt;/service\\s*\\/&gt;/&lt;function\\s*\\/&gt;getRelatedByType/&lt;/function\\s*\\/&gt;/&lt;level\\s*\\/&gt;0/&lt;/level\\s*\\/&gt;/&lt;paramSize\\s*\\/&gt;2/&lt;/paramSize\\s*\\/&gt;/&lt;param order ='0'\\s*\\/&gt;?/&lt;/param\\s*\\/&gt;/&lt;param order ='1'\\s*\\/&gt;BPCK,GPCK,SBD,SCD/&lt;/param\\s*\\/&gt;/&lt;/FS\\s*\\/&gt;/&lt;/WFE\\s*\\/&gt;` /&lt;br\\s*\\/&gt; - Step 2 Create Batch text input file (Ingredients.txt) with following RxNorm Fentanyl-type ingredient codes representing fentanyl, sufentanil, alfentanil, remifentanil as an input within the file:?4337?56795?480?73032 /&lt;br\\s*\\/&gt; - Step 3 Upload the batch text input file Ingredients.txt created in step 2. /&lt;br\\s*\\/&gt; - Step 4 Submit the batch which will run the workflow using the input codes to generate a combined set of all the concepts needed."
   }, {
     "url": "http://hl7.org/fhir/StructureDefinition/valueset-author",
     "valueContactDetail": {

input/vocabulary/valueset/valueset-non-synthetic-opioid-medications.json

@@ -6,7 +6,7 @@
   },
   "extension": [ {
     "url": "http://hl7.org/fhir/StructureDefinition/valueset-rules-text",
-    "valueMarkdown": "[https://mor.nlm.nih.gov/RxMix/](https://mor.nlm.nih.gov/RxMix/) Script: <br /> - Step 1 Upload to RxMix a workflow config file  named GetRelatedByType.config containing the following workflow text: `<WFE><filteredOutputs>RXCUI|name|term_type</filteredOutputs><input>NOINPUT</input><FS><service>NOINPUT</service><function>getRelatedByType</function><level>0</level><paramSize>2</paramSize><param order ='0'>?</param><param order ='1'>BPCK,GPCK,SBD,SCD</param></FS></WFE>` <br /> - Step 2 Create Batch text input file (Ingredients.txt) with following RxNorm non-synthetic opioid ingredient codes representing morphine, codeine, opium as an input within the file:?2670?7052?7676 <br /> - Step 3 Upload the batch text input file Ingredients.txt created in step 2. <br /> - Step 4 Submit the batch which will run the workflow using the input codes to generate a combined set of all the concepts needed."
+    "valueMarkdown": "[https://mor.nlm.nih.gov/RxMix/](https://mor.nlm.nih.gov/RxMix/) Script: /&lt;br\\s*\\/&gt; - Step 1 Upload to RxMix a workflow config file  named GetRelatedByType.config containing the following workflow text: `/&lt;WFE\\s*\\/&gt;/&lt;filteredOutputs\\s*\\/&gt;RXCUI|name|term_type/&lt;/filteredOutputs\\s*\\/&gt;/&lt;input\\s*\\/&gt;NOINPUT/&lt;/input\\s*\\/&gt;/&lt;FS\\s*\\/&gt;/&lt;service\\s*\\/&gt;NOINPUT/&lt;/service\\s*\\/&gt;/&lt;function\\s*\\/&gt;getRelatedByType/&lt;/function\\s*\\/&gt;/&lt;level\\s*\\/&gt;0/&lt;/level\\s*\\/&gt;/&lt;paramSize\\s*\\/&gt;2/&lt;/paramSize\\s*\\/&gt;/&lt;param order ='0'\\s*\\/&gt;?/&lt;/param\\s*\\/&gt;/&lt;param order ='1'\\s*\\/&gt;BPCK,GPCK,SBD,SCD/&lt;/param\\s*\\/&gt;/&lt;/FS\\s*\\/&gt;/&lt;/WFE\\s*\\/&gt;` /&lt;br\\s*\\/&gt; - Step 2 Create Batch text input file (Ingredients.txt) with following RxNorm non-synthetic opioid ingredient codes representing morphine, codeine, opium as an input within the file:?2670?7052?7676 /&lt;br\\s*\\/&gt; - Step 3 Upload the batch text input file Ingredients.txt created in step 2. /&lt;br\\s*\\/&gt; - Step 4 Submit the batch which will run the workflow using the input codes to generate a combined set of all the concepts needed."
   }, {
     "url": "http://hl7.org/fhir/StructureDefinition/valueset-author",
     "valueContactDetail": {

input/vocabulary/valueset/valueset-opioid-analgesics-with-ambulatory-misuse-potential.json

@@ -6,7 +6,7 @@
   },
   "extension": [ {
     "url": "http://hl7.org/fhir/StructureDefinition/valueset-rules-text",
-    "valueMarkdown": "[https://mor.nlm.nih.gov/RxMix/](https://mor.nlm.nih.gov/RxMix/) Script: <br /> - Step 1a ?Create Batch text input file (SCT-Opioids.txt) with following SCT identifier (for the concept \"Product containing opioid receptor agonist (product)\") as an input within the file: ?360204007 <br /> - Step 1b?Submit batch job using the above SCT-Opioids.txt file to following workflow by uploading file (SCT-Opioid-wf.config) with the following in the file: `<WFE><filteredOutputs>RXCUI|name|term_type</filteredOutputs><input>NOINPUT</input><FS><service>NOINPUT</service><function>findClassById</function><level>0</level><paramSize>1</paramSize><param order ='0'>?</param></FS><FS><service>NOINPUT</service><function>getClassMembers</function><level>1</level><paramSize>5</paramSize><param order ='0'>?</param><param order ='1'>SNOMEDCT</param><param order ='2'>isa_disposition</param><param order ='3'>0</param><param order ='4'>IN,MIN,PIN</param></FS><FS><service>NOINPUT</service><function>getRelatedByType</function><level>2</level><paramSize>2</paramSize><param order ='0'>?</param><param order ='1'>BPCK,GPCK,SBD,SCD</param></FS></WFE>` <br /> ?This will produce a result file with all Opioid clinical drugs included <br /> - Step 2?To remove all cough and bowel transit formulation codes and to remove the injectable codes filter out all codes with the following strings:?Ingredient strings: ?Guaifenesin, Chlorpheniramine, Pseudoephedrine, Brompheniramine, Phenylephrine, Phenylpropanolamine, Promethazine, Bromodiphenhydramine, guaiacolsulfonate, homatropine?Form strings:?inject, cartridge, syringe"
+    "valueMarkdown": "[https://mor.nlm.nih.gov/RxMix/](https://mor.nlm.nih.gov/RxMix/) Script: /&lt;br\\s*\\/&gt; - /&lt;Step 1a ?Create Batch text input file (SCT-Opioids.txt) with following SCT identifier (for the concept \"Product containing opioid receptor agonist (product)\") as an input within the file: ?360204007 /&lt;br\\s*\\/&gt; - Step 1b?Submit batch job using the above SCT-Opioids.txt file to following workflow by uploading file (SCT-Opioid-wf.config) with the following in the file: `/&lt;WFE\\s*\\/&gt;/&lt;filteredOutputs\\s*\\/&gt;RXCUI|name|term_type/&lt;/filteredOutputs\\s*\\/&gt;/&lt;input\\s*\\/&gt;NOINPUT/&lt;/input\\s*\\/&gt;/&lt;FS\\s*\\/&gt;/&lt;service\\s*\\/&gt;NOINPUT/&lt;/service\\s*\\/&gt;/&lt;function\\s*\\/&gt;findClassById/&lt;/function\\s*\\/&gt;/&lt;level\\s*\\/&gt;0/&lt;/level\\s*\\/&gt;/&lt;paramSize\\s*\\/&gt;1/&lt;/paramSize\\s*\\/&gt;/&lt;param order ='0'\\s*\\/&gt;?/&lt;/param\\s*\\/&gt;/&lt;/FS\\s*\\/&gt;/&lt;FS\\s*\\/&gt;/&lt;service\\s*\\/&gt;NOINPUT/&lt;/service\\s*\\/&gt;/&lt;function\\s*\\/&gt;getClassMembers/&lt;/function\\s*\\/&gt;/&lt;level\\s*\\/&gt;1/&lt;/level\\s*\\/&gt;/&lt;paramSize\\s*\\/&gt;5/&lt;/paramSize\\s*\\/&gt;/&lt;param order ='0'\\s*\\/&gt;?/&lt;/param\\s*\\/&gt;/&lt;param order ='1'\\s*\\/&gt;SNOMEDCT/&lt;/param\\s*\\/&gt;/&lt;param order ='2'\\s*\\/&gt;isa_disposition/&lt;/param\\s*\\/&gt;/&lt;param order ='3'\\s*\\/&gt;0/&lt;/param\\s*\\/&gt;/&lt;param order ='4'\\s*\\/&gt;IN,MIN,PIN/&lt;/param\\s*\\/&gt;/&lt;/FS\\s*\\/&gt;/&lt;FS\\s*\\/&gt;/&lt;service\\s*\\/&gt;NOINPUT/&lt;/service\\s*\\/&gt;/&lt;function\\s*\\/&gt;getRelatedByType/&lt;/function\\s*\\/&gt;/&lt;level\\s*\\/&gt;2/&lt;/level\\s*\\/&gt;/&lt;paramSize\\s*\\/&gt;2/&lt;/paramSize\\s*\\/&gt;/&lt;param order ='0'\\s*\\/&gt;?/&lt;/param\\s*\\/&gt;/&lt;param order ='1'\\s*\\/&gt;BPCK,GPCK,SBD,SCD/&lt;/param\\s*\\/&gt;/&lt;/FS\\s*\\/&gt;/&lt;/WFE\\s*\\/&gt;` /&lt;br\\s*\\/&gt; ?This will produce a result file with all Opioid clinical drugs included /&lt;br\\s*\\/&gt; - Step 2?To remove all cough and bowel transit formulation codes and to remove the injectable codes filter out all codes with the following strings:?Ingredient strings: ?Guaifenesin, Chlorpheniramine, Pseudoephedrine, Brompheniramine, Phenylephrine, Phenylpropanolamine, Promethazine, Bromodiphenhydramine, guaiacolsulfonate, homatropine?Form strings:?inject, cartridge, syringe"
   }, {
     "url": "http://fhir.org/guides/cdc/opioid-cds/StructureDefinition/cdc-valueset-clinical-focus",
     "valueString": "All opioid clinical drugs except cough medications, antisapasmodics, or those restricted to surgical use only."