From a8242c5d9725f5e09d101bab974aa440f159e697 Mon Sep 17 00:00:00 2001 From: NinaBrundke Date: Mon, 2 Dec 2024 10:37:23 +0100 Subject: [PATCH 1/7] Manual adaptions and corrections for Tools --- .../source/tools/anthropological_analyses.rst | 14 ++--- sphinx/source/tools/image_annotation.rst | 30 +++++----- sphinx/source/tools/map.rst | 55 ++++++++++--------- sphinx/source/tools/network.rst | 32 ++++++----- sphinx/source/tools/notes.rst | 18 +++--- sphinx/source/tools/profile.rst | 27 +++++---- sphinx/source/tools/radiocarbon_dating.rst | 4 +- sphinx/source/tools/search.rst | 35 ++++++------ 8 files changed, 110 insertions(+), 105 deletions(-) diff --git a/sphinx/source/tools/anthropological_analyses.rst b/sphinx/source/tools/anthropological_analyses.rst index 060fdac66..489a75b7b 100644 --- a/sphinx/source/tools/anthropological_analyses.rst +++ b/sphinx/source/tools/anthropological_analyses.rst @@ -15,11 +15,11 @@ Sex estimation on the method published by *Ferembach et al. 1979* (D. Ferembach, I. Schwidetzky, and M. Stloukal, Empfehlungen für die Alters- und Geschlechtsdiagnose am Skelett. Homo 30, 1979, 1-32). -For this method, features of the bones, primarily in the skull and pelvis, are -examined. In addition to the features proposed in Ferembach et al. possibilities -to assess the margo supramastoideus, os sacrum, and the robustness of the -humerus and femur were supplemented. Therefore, the following features can be -accessed: +Features of the bones, primarily in the skull and pelvis, are +examined when following this method. In addition to the features proposed in +Ferembach et al. possibilities to assess the margo supramastoideus, os +sacrum, and the robustness of the humerus and femur were supplemented. +Therefore, the following features can be accessed: **Skull** @@ -75,8 +75,8 @@ value (W) are given: * **male** 2 * **not preserved** (no assigned value) -The product is then divided by the sum of the weighting values used. -The result is called sex ratio and can take values between -2 and 2. +The product of all features is then divided by the sum of the weighting values +used. The result is called sex ratio and can take values between -2 and 2. The following types are assigned: * -2 to -0.7: **female** diff --git a/sphinx/source/tools/image_annotation.rst b/sphinx/source/tools/image_annotation.rst index cd25930f7..a469bc0db 100644 --- a/sphinx/source/tools/image_annotation.rst +++ b/sphinx/source/tools/image_annotation.rst @@ -4,8 +4,8 @@ Image annotation .. toctree:: The image annotation feature allows for marking areas on an image and adding -a text and/or link it to an entity. E.g. a person on a group picture or an -artifact at an excavation site image. +a text and/or link to an entity. In that way a person in a group picture +or an artifact on an excavation photo can be linked to the entity in OpenAtlas. Prerequisite for image annotation is an enabled and configured :doc:`/admin/iiif` server. @@ -13,23 +13,23 @@ Prerequisite for image annotation is an enabled and configured Usage ----- -At a :doc:`/entity/file` detail view click on the **Enable IIIF view** button -below the image if it wasn't converted already. - -Once the image was converted you can click on the **Annotate** link below the +In a :doc:`/entity/file`'s detail view, click the **Enable IIIF view** button +below the image, if it is not converted already. +Once the image is converted click the **Annotate** link below the image and the annotation view will open in a new tab. -In the image annotation view you can see the image in an IIIF viewer and a form -for new annotations and a list of already entered annotations with links to -edit or delete them. +In the image annotation view you can see the image in an IIIF viewer as +well as a form for new annotations including a list of already saved +annotations. Links to edit or delete previous annotations are als porvided. **Form fields** -* **IIIF image view** - here you can use the rectangle draw button on the left - side to mark an area. -* **Annotation** - you can enter a description here -* **Entity** - you can link an entity here +* **IIIF image view** - click the button on the left to draw a rectangle + to mark the desired area. +* **Annotation** - enter a description +* **Entity** - link to an entity Be aware that the **Entity** selection only offers entities that are already -linked to the file. This is to guarantee that the entity is also linked via -the model (which the image annotation is not part of). +linked to the file. This guarantees that each selectable entity is also +linked to the file via the model. Immage annotation does not create new +model links in the background! diff --git a/sphinx/source/tools/map.rst b/sphinx/source/tools/map.rst index d4d3da1e9..6ab2bbe28 100644 --- a/sphinx/source/tools/map.rst +++ b/sphinx/source/tools/map.rst @@ -4,28 +4,32 @@ Map .. toctree:: The interactive map (based on `Leaflet `_) is a tool -to present and enter the location of places. `PostGIS `_ -is used for creating and manipulating spatial data. +to present and enter a place's location. +`PostGIS `_ is used for creating and manipulating +spatial data. Navigation ---------- -* You can zoom in/out with the mousewheel or the **+**/**-** buttons in the - upper left corner. -* You can drag the content with the mouse (left click and hold) -* Change the basemap at the layer button in the upper right corner. -* Switch to full screen with the rectangle in the upper left. +* Zoom in/out of the map by using your mousewheel or the **+**/**-** + buttons in the upper left corner +* Drag the content with the mouse (left click and hold) +* Change the basemap by using layer button in the upper right corner +* Switch to full screen with the rectangle in the upper left corner Search ------ -With the magnifying glass icon in the upper left you can search for (current) -places at `GeoNames `_. +Press the magnifying glass icon on the left side to search for +a places. The search filters data on +`GeoNames `_ and provides a list of places with +the same name. Choosing the desired places allows to import the geonames ID +and/or the coordinates of said place into the OpenAtlas place form (see below). WKT import ---------- .. |edit| image:: edit.png -With the |edit| icon a WKT text can be imported. +With the |edit| icon WKT text can be imported. Clicking this button will open a new popup where a WKT geometry can be entered. If the geometry is valid, the **draw geometry** button will be enabled. By clicking this button the geometry will be drawn on the map and the respective @@ -40,33 +44,32 @@ Possible WKT geometries with examples are: Adding new geometries --------------------- -When in insert or update mode of a place you have following options available -(can be combined): +When in insert or update mode of a place you have the following options +(more than one can be used): -* Set a marker/point at the position where the physical thing is located. -* Draw a line connected to a physical objects spatial characteristics, e.g. - the course of a road. -* Draw the shape of a physical thing if the precise extend is known. -* Draw the area in which the physical thing is located. E.g. if its precise - shape is not known but known to be within a certain area. +* Set a marker/point at the position where the physical thing is located +* Draw a line connected to a physical object's spatial characteristics, e.g. + the course of a road or the bed of a river +* Draw the shape of a physical thing if the precise extend is known +* Draw an area in which the physical thing is located with 100% certainty GeoNames -------- -The *GeoNames ID* field can either be manually entered or imported from a map -search result. +The *GeoNames ID* field can either be entered manually or imported +from the map's search result -The checkbox **exact match** can be used if there is a high -degree of confidence that the concepts can be used interchangeably. By default -it is a **close match**, which means that the concepts are sufficiently similar +**Exact match** should be used if there is a high degree of confidence that +the concepts can be used interchangeably. By default it is a +**close match**, which means that the concepts are sufficiently similar that they can be used interchangeably in some information retrieval applications. Please refer to `SKOS `_ for further information. Map Overlay ----------- -If you have the module map overlay activated in your :doc:`profile`, added +If the module map overlay is activated in the :doc:`profile` settings, added overlays for places will be visible on the map by default and can be toggled -at map layer button at the upper right corner. +with the map layer button at the upper right corner. To insert new overlays (only available for editors and admins) go to the view of a specific place. After adding an image file in the file tab you can click @@ -77,4 +80,4 @@ of a specific place. After adding an image file in the file tab you can click * bottom left corner of the image to position it on the map. -The coordinates need to be in **WGS84** decimal degrees (EPSG 4326). +The coordinates have to be stated in **WGS84** decimal degrees (EPSG 4326). diff --git a/sphinx/source/tools/network.rst b/sphinx/source/tools/network.rst index d6cfda3ec..021d2d0ff 100644 --- a/sphinx/source/tools/network.rst +++ b/sphinx/source/tools/network.rst @@ -3,17 +3,19 @@ Network visualization .. toctree:: -With the integration of `D3.js `_ data can be visualized as -a network graph available at the **Network visualization** button at the -:doc:`/overview` or as an egocentric network at the entity detail view. +With the integration of `D3.js `_, data can be visualized as +a network graph. The graph, specific for each OpenAtlas instance, is available +via the **Network visualization** button at the :doc:`/overview` or as an +egocentric network at the entity detail view. -**Classic** is the default but it can be switched to other types at the top of -the visualization pages. +Three different layouts are provided. **Classic** is the default setting but +it can be switched to other types at the top of the visualization pages. .. figure:: network_classic.png :align: left Classic + .. figure:: network_2d.png :align: left @@ -41,14 +43,13 @@ Navigation Options ------- -* **Colors** - you can change the node color of classes -* **Depth** - in egocentric networks you can define the link depth -* **Show orphans** - if nodes without connections should be shown too -* **Width** - the width of the resulting image in pixel -* **Height** - the height of the resulting image in pixel -* **Charge** - a parameter for the distance between entries which are not - connected -* **Distance** - a parameter for the distance between connected entries +* **Colors** - changes the node color of classes +* **Depth** - defines the link depth in egocentric networks +* **Show orphans** - select if nodes without any connections are displayed +* **Width** - define width of the displayed image in pixel +* **Height** - define height of the displayed image in pixel +* **Charge** - select the distance between unconnected entities +* **Distance** - select the distance between connected entities In case of performance issues ----------------------------- @@ -60,5 +61,6 @@ Download -------- If an image is available (classic mode only) you can download it as PNG. Be aware that the resulting image is exactly what you see in this moment so -you may want to change width and height in the options before. Also you may -want to choose a zoom level where labels are readable. +you may want to change width and height in the options before downloading. +Set the zoom level according to your needs to ensure the labels are still +readable. diff --git a/sphinx/source/tools/notes.rst b/sphinx/source/tools/notes.rst index 921c46fb4..a2ad87e12 100644 --- a/sphinx/source/tools/notes.rst +++ b/sphinx/source/tools/notes.rst @@ -3,14 +3,14 @@ Notes .. toctree::* -**Notes** are an additional tool for your workflow, e.g. to add a personal -reminder to an entity. They are not part of the :doc:`data model` -and won't show in presentation sites or be archived. +**Notes** are an additional tool for your workflow and can be used to add a +personal reminder to an entity, etc.. They are not part of the :doc:`data +model` and won't be shown on presentation sites or be archived. -* Notes can be added at the notes tab when viewing an entity +* Notes can be added by using the notes tab when viewing an entity * Notes will be displayed at the entity view and at the :doc:`/overview` -* Notes set to private (default) are only visible to you, public can be - seen by everybody -* Notes will get deleted if the entity is deleted by you or anybody else -* Admins or manager can set notes of other users to private - (e.g. in case they got inactive) +* Notes set to private (default) are only visible to you, public notes can be + seen by everybody with access to the OpenAtlas instance +* Notes will be deleted if the entity is deleted by you or anybody else +* Admins or manager can set notes of other users to private (e.g. in case + they are inactive) diff --git a/sphinx/source/tools/profile.rst b/sphinx/source/tools/profile.rst index 9f8004171..5358301bb 100644 --- a/sphinx/source/tools/profile.rst +++ b/sphinx/source/tools/profile.rst @@ -3,14 +3,13 @@ Profile .. toctree:: -When logged in you can access your **profile** at the right top of the site. -There you can edit personal information and adapt the user interface to your +When logged in, you can access your **profile** at the right top of the page. +Here you can edit personal information and adapt the user interface to your preferences. Change password --------------- -When clicking on **Change password** you have to enter the current password and -a new one twice. +To **Change password** enter the current password and a new one twice. General ------- @@ -25,30 +24,30 @@ General Modules ------- Here you can adjust shown interface elements to your preferences. You still see -e.g. already entered hours, minutes and seconds even when you deactivate them -but the interface elements to add them will disappear. +unselected elements such as hours, minutes and seconds in a form, when data +was already entered in those fields. -* **Map Overlay** - to see overlays on the :doc:`/tools/map` or insert new ones - (editor or above) +* **Map Overlay** - needed to see overlays on the :doc:`/tools/map` as + well as insert new overlays and edit them * **Time** - show time fields in forms, see :doc:`/ui/date` .. _display: Display ------- -* **Language** - select your language for the user interface -* **Table rows** - amount of rows that are shown on one table page +* **Language** - select your preferred language for the user interface +* **Table rows** - amount of rows that are shown * **Show aliases in tables** - show aliases of actors and places in tables and make them searchable * **Show created and modified information** - show when/by whom an entry was created/updated -* **Show import information** - show original project and identifier at entities +* **Show import information** - show project and identifier for entities that were imported from another project * **Show CIDOC class** - show the corresponding CIDOC class at entity view * **Show API links** - show a buttons for :doc:`/technical/api` views at - entities -* **Default map zoom** - define the lowest zoom level to include all features in - a :doc:`/tools/map` view + entity view +* **Default map zoom** - define the lowest zoom level to include all + features in a :doc:`/tools/map` view * **Max map zoom** - adjust how far you can zoom into a :doc:`/tools/map`. * **Show icons in tables** - if activated small images of files are shown in tables diff --git a/sphinx/source/tools/radiocarbon_dating.rst b/sphinx/source/tools/radiocarbon_dating.rst index 265efc668..9f14638bf 100644 --- a/sphinx/source/tools/radiocarbon_dating.rst +++ b/sphinx/source/tools/radiocarbon_dating.rst @@ -9,14 +9,14 @@ button displayed on the level of stratigraphic units. .. image:: tool_button.png -After then pressing the **Radiocarbon dating** button, you can add and/or edit +After pressing the **Radiocarbon dating** button, you can add and/or edit the following information: * **Laboratory ID** - an alphanumerical abbreviation of the lab that conducted the analyses, e.g. VERA for Vienna Environmental Research Accelerator * **Specimen ID** - a numeric ID given to the sample by the conducting laboratory -* **Radiocarbon year** - Result if the analysis in years, e.g. 1015 +* **Radiocarbon year** - Result of the analysis in years, e.g. 1015 * **Range** - Accounts for the possible error of the measurement and is stated in the result as +/- value in years, e.g. +/- 30. In the form you only state the amount of years, adding +/- into the form field is not necessary diff --git a/sphinx/source/tools/search.rst b/sphinx/source/tools/search.rst index eb1d31e0d..c26d07a23 100644 --- a/sphinx/source/tools/search.rst +++ b/sphinx/source/tools/search.rst @@ -3,34 +3,35 @@ Search .. toctree:: -To allow quick navigation, even in a big data set, the global full-text search -can find entities containing the search term in their name or aliases. It is: - -* Not case sensitive, e.g. **aDa lovelacE** will find **Ada Lovelace** -* Full text, e.g. **da Love** will find **Ada Lovelace** -* Unaccented, e.g. **Lovē** will find **Love** and vice-versa -* You can use *%* as a placeholder, e.g. **Ada L%ce** will +To allow quick navigation even in big data sets, the global full-text search +can find entities containing the search term in their name or aliases. The +search is: + +* Not case sensitive, so **aDa lovelacE** will find **Ada Lovelace** +* Full text, therefore **da Love** will find **Ada Lovelace** +* Unaccented, **Lovē** will find **Love** and vice-versa +* You can use *%* as a placeholder, so **Ada L%ce** will find **Ada Lovelace** -Additionally, a refined advanced search can be used to filter the results -where more options are available: +Additionally, an advanced search can be used to filter the results when more +than one option is available: -* **Only entities edited by me** - show only entities which you have created or - edited. +* **Only entities edited by me** - shows only entities which you have + created or edited. * **Also search in description** - searches in description and date comments -* **Classes** - search only in selected classes, e.g. Place - +* **Classes** - searches only in selected classes, such as place or actor * **Dates** * This filter is only active if at least the **from** or **to** year is filled out. * If only a year is provide the **from** date will be **YYYY-01-01**, the **to** date will be **YYYY-12-31** - * If only a year and a month is provided it will be the last of this month. + * If only a year and a month is provided it will show data from the first + to the last day of the month * If the option **Include dateless entities** is checked, entities without - dates will be found too. + dates will be displayed as well Because entities can have up to 4 date values (time span for begin and time span for end) they will be added to the result if at least one date meets the -criteria. E.g. a person that lived from **1540 to 1560** will be found when -the **from year** value is **1550**. +criteria. Therefore, a person that lived from **1540 to 1590** will be found +when the **from year** value is **1550**. From 166d59d2b7ce9dbad6f1ea4b5bce92e002cfab8e Mon Sep 17 00:00:00 2001 From: NinaBrundke Date: Mon, 2 Dec 2024 11:43:11 +0100 Subject: [PATCH 2/7] Manual adaptions and corrections for Troubleshooting and UI --- sphinx/source/troubleshooting/display.rst | 23 +++++---- sphinx/source/troubleshooting/error_codes.rst | 20 ++++---- sphinx/source/troubleshooting/index.rst | 4 +- sphinx/source/troubleshooting/login.rst | 40 +++++++++------- sphinx/source/ui/date.rst | 48 +++++++++++-------- sphinx/source/ui/description.rst | 6 ++- sphinx/source/ui/form.rst | 2 +- sphinx/source/ui/menu.rst | 4 +- sphinx/source/ui/name.rst | 11 +++-- sphinx/source/ui/table.rst | 20 +++++--- 10 files changed, 103 insertions(+), 75 deletions(-) diff --git a/sphinx/source/troubleshooting/display.rst b/sphinx/source/troubleshooting/display.rst index 6e8a3ad93..b8b32bd6f 100644 --- a/sphinx/source/troubleshooting/display.rst +++ b/sphinx/source/troubleshooting/display.rst @@ -3,33 +3,36 @@ Display Errors .. toctree:: -This is a general topic in case there are display errors like elements are out -of place, missing or not working as intended. There can be many reasons for -these errors and they have probably nothing to do with you but here are some -suggestions you can try on your side to fix them. +This is a general topic in case there are display errors such as out of place +elements, missing or not working items. Many reasons can cause errors +and a malfunction most likely was not caused by you but here are +some suggestions what you can try on your side to fix them. Browser Version --------------- Make sure your browser is up to date. We try to support all major browsers but -because OpenAtlas uses advanced features a current version may be required. +due to OpenAtlas using advanced features a current version may be required. Refresh your Browser -------------------- Sometimes browser cache (remember) older content. A refresh should solve this -problem. E.g. in Firefox you can do this with the **F5** key. +problem. For example, in Firefox this can be done by pressing the +**F5** key. JavaScript ---------- JavaScript is required for advanced features to work. In case you haven't -activated JavaScript you should see a warning message at the top of the site. +activated JavaScript in our browser settings, a warning message will be +displayed. If the problem persists ----------------------- -If none of the above solutions work please report this bug. There is a -**Feedback** link on the start page after you logged in. It would be very +If none of the above solutions work, please report the bug to us. There is a +**Feedback** link at the start page after you logged in. It would be very helpful if you provide which browser/version you are using and a screenshot -showing the problem. +showing the problem. You can also go to +`redmine `_ directly and report the issue there. diff --git a/sphinx/source/troubleshooting/error_codes.rst b/sphinx/source/troubleshooting/error_codes.rst index fa9b5a245..81d7865b8 100644 --- a/sphinx/source/troubleshooting/error_codes.rst +++ b/sphinx/source/troubleshooting/error_codes.rst @@ -3,23 +3,27 @@ Error Codes .. toctree:: -Here are some explanations for error codes you may encounter. Please let us know if you think you -encountered a bug. +Here are some explanations for error codes you may encounter. Please let us +know if you think you encountered a bug. The best way to report an issue is +via out issuetracker at `redmine `_ 403 - Forbidden --------------- -You are trying to access a page that you don't have permissions for. E.g. trying to edit an entity -as user with a **read only** group. The user interface shouldn't provide you with links to sites -that are restricted for your user. Maybe you used an obsolete link or bookmark. +You are trying to access a page that you don't have permissions to access. +This can happen if you try to edit an entity as user with **read only** +status. The user interface shouldn't provide you with links to sites +that are restricted for your user, so maybe you used an obsolete link or +bookmark. If this happens regularly, please report the issue. 404 - File not found -------------------- -The site you requested cannot be found. Maybe you used an obsolete link or bookmark. +The site you requested cannot be found. Maybe you used an obsolete link or +bookmark. 418 - I’m a teapot ------------------ -You see this message if you tried to access an entity with an id that doesn't exist (anymore). -Maybe you used an obsolete link or bookmark. +This message is displayed if you tried to access an entity with an ID that +doesn't exist (anymore). Maybe you used an obsolete link or bookmark. diff --git a/sphinx/source/troubleshooting/index.rst b/sphinx/source/troubleshooting/index.rst index 40a8fd1fd..d9c7f6a8b 100644 --- a/sphinx/source/troubleshooting/index.rst +++ b/sphinx/source/troubleshooting/index.rst @@ -1,8 +1,8 @@ Troubleshooting =============== -Here you find help and suggestions for common issues. In case this doesn't solves the -problem please report the issue. +Here you find help and suggestions for common issues. In case this doesn't +solves the problem please report the issue. .. toctree:: :maxdepth: 1 diff --git a/sphinx/source/troubleshooting/login.rst b/sphinx/source/troubleshooting/login.rst index 3cb7d2572..ebd6b5080 100644 --- a/sphinx/source/troubleshooting/login.rst +++ b/sphinx/source/troubleshooting/login.rst @@ -3,34 +3,40 @@ Login .. toctree:: -Proceed according to the error message. +Depending on the issue, please try the following solutions to log in. Wrong Password -------------- -You can activate the **show password** checkbox to see the entered password and make sure that the -problem isn't keyboard related, e.g. capslock is turned on. +You can activate the **show password** checkbox to see the entered password +and make sure that the problem isn't keyboard related, e.g. if capslock is +turned on. -You can request a new password when clicking -**Forgot your password?** which is located under login button if email was set up. +You can request a new password by clicking the +**Forgot your password?** link. It is directly located underneath the login +button. This is only possible if an email address was provided in the +profile settings previously. -No user with this name found. ------------------------------ +No user with this name found +---------------------------- Either you misspelled the username or the user doesn't exist (anymore). -If there is a **Forgot your password?** link below the login you can request a new password with -the email you are registered with. With the new password you'll also receive your username. +If there is a **Forgot your password?** link below the login button you can +request a new password. The information will be sent to the provided email. +A new username is provided together with the password. -This user is not activated. ---------------------------- +This user is not activated +-------------------------- -Your user was deactivated. If you think this to be a mistake please contact your project manager. +Your user was deactivated. If you think this was done by mistake, please +contact your project manager. -Too many login attempts. ------------------------- +Too many login attempts +----------------------- -For security reasons (e.g. automatic attacks) the login gets locked after a few failed attempts. -Number of failed attempts and minutes to wait until you can try again depend on project specific -settings but in most cases you can try again after a few minutes. +For security reasons (e.g. automatic attacks) the login gets locked after a +few failed attempts. The number of failed attempts and minutes to wait until +you can try again depend on project specific settings. If you can't try +again after a few minutes, please contact your project manager. diff --git a/sphinx/source/ui/date.rst b/sphinx/source/ui/date.rst index 3395ddedf..b899885be 100644 --- a/sphinx/source/ui/date.rst +++ b/sphinx/source/ui/date.rst @@ -7,37 +7,39 @@ Date CIDOC based OpenAtlas shortcuts: OA8 (begins in) and OA9 (ends in) -Date input fields in forms are initially hidden and can be shown with -clicking on **Show** beside the **Date** label. +Date input fields in forms are initially hidden and can be shown after +clicking on the **Show** button next to the **Date** label. -To manage uncertainty in time up to 4 dates can be used: a time span for the -beginning and a time span for the ending. You find detailed examples here: +To manage uncertainty in time up to four dates can be used: a time span for the +beginning with start and end date as well as and a time span for the end, +also with a beginning and end date. Find detailed examples here: :doc:`/examples/time_spans` .. image:: date.png **Exact date** -For example if you knew the exact birth of an actor you could enter -**1356-12-23** in the first row. +If you know the exact birth of an actor you could enter +**1356-12-23** in the first row of the date field. **Time span** -If you are unsure e.g when a Church was destroyed you could use both end -dates. Chose a wide enough -span where you are sure it had happened, e.g. the fist decade of 1800. +If you are unsure when e.g. a Church was destroyed, you can use both end +dates to enter a timespan. Chose a wide enough range to make sure the event +lies in between those dates with 100% certainty. So, to record a date within +the fist decade of 1800, enter: +* **1800** into the first end row of the date field +* **1809** into the second end row of the date field -* enter in the first end year: **1800** -* enter in the second end year: **1809** - -Missing days and months are filled out so that the result will be -**1800-01-01** to **1809-12-31**. +Days and months are filled in automatically if not stated by you. The result +will therefor be **1800-01-01** to **1809-12-31**. **Autocomplete dates** -If not an exact date was entered, the system automatically creates -a **time span**. For example, if only the first year is entered, it will be -converted to a timespan of this year. For example: +If a date but not an exact date was entered into the form, the system +automatically creates a **time span**. For example, if only a year is +entered in the first row, a timespan of this year will be saved. +For example: * **800** will generate: **800-1-1** to **800-12-31**. * **800-5** will generate **800-5-1** to **800-5-31** @@ -47,10 +49,13 @@ converted to a timespan of this year. For example: * **Year**: -4713 to 9999 but not zero * **Month**: 1 to 12 * **Day**: 1 to 31 -* **Comment**: a text field for additional information for begin or end +* **Comment**: add additional information for begin or end + +Additional fields for hour, minute and second appear if the time module is +activated in the :doc:`/tools/profile` or if that information was already +entered for that entity: -Additional fields if the time module is activated in :doc:`/tools/profile` or -a time was already entered: +Possible values: * **Hour**: 0 to 23 * **Minute**: 0 to 59 @@ -62,4 +67,5 @@ Dates will be validated so you can just try if you aren't sure about a leap year or similar. Most limitations come from the database `PostgreSQL `_ which in turn uses the `Proleptic Gregorian calendar `_. -So there is no year zero (one year before year 1 is the year 1 BC). +So there is no year zero (one year before year 1 is the year 1 BC) and dates +before the year 4713 BC can not be recorded. diff --git a/sphinx/source/ui/description.rst b/sphinx/source/ui/description.rst index 4334d8959..0de8fcb37 100644 --- a/sphinx/source/ui/description.rst +++ b/sphinx/source/ui/description.rst @@ -10,7 +10,9 @@ CIDOC documentation: :cidoc_entity:`E62 String` Used to add additional information. * A description can be searched for in the advanced :doc:`/tools/search`. -* Almost all special characters are supported like e.g. Cyrillic characters or - mathematical symbols. +* Almost all special characters are supported like Cyrillic characters or + mathematical symbols for example. * There are no formatting options (except line breaks) to keep data usable for different systems. +* Keep in mind that as much information as possible should be covered by + using types for facilitating presentation on a presentation site diff --git a/sphinx/source/ui/form.rst b/sphinx/source/ui/form.rst index 98d40e234..8707e4e26 100644 --- a/sphinx/source/ui/form.rst +++ b/sphinx/source/ui/form.rst @@ -3,7 +3,7 @@ Form ==== -Forms are used for data entry. asterisk. Required fields are marked with an asterisk \*. +Forms are used for data entry. Required fields are marked with an asterisk \*. .. toctree:: diff --git a/sphinx/source/ui/menu.rst b/sphinx/source/ui/menu.rst index c00b4eaf9..3dc00e165 100644 --- a/sphinx/source/ui/menu.rst +++ b/sphinx/source/ui/menu.rst @@ -3,7 +3,7 @@ Menu ==== -The main menu can be found at the top of the user interface. It contain a logo -which als serves as a link to the start page. as well as links to **Source**, +The main menu can be found at the top of the user interface. It contains a logo +(which serves as a link to the start page) as well as links to **Source**, **Place**, **Artifact**, etc. You can also find the **Settings** button, a search field and a possibility to switch languages in the right corner. diff --git a/sphinx/source/ui/name.rst b/sphinx/source/ui/name.rst index 72846f6fa..40f4abf74 100644 --- a/sphinx/source/ui/name.rst +++ b/sphinx/source/ui/name.rst @@ -3,9 +3,10 @@ Name .. toctree:: -The name field is one of the few required fields which are marked with an asterisk. +The name field is one of the few required fields which are marked with an +asterisk. +It's important to choose a fitting name for every entry as it is used to +find data in tables and within the global :doc:`/tools/search`. -It's quite important since it is used to find entries in tables or with the global :doc:`/tools/search`. - -Duplicate names are allowed but if they don't differ in e.g. the standard type, it could be -difficult to find the right one in a table. +Duplicate names are allowed but if they don't differ in e.g. the standard +type, it will become difficult to differentiate them from each other. diff --git a/sphinx/source/ui/table.rst b/sphinx/source/ui/table.rst index d2306524a..4341956fd 100644 --- a/sphinx/source/ui/table.rst +++ b/sphinx/source/ui/table.rst @@ -5,16 +5,22 @@ Table .. toctree:: -Tables are used to show multiple entries at a glance. To navigate quickly multiple tools are available: +Tables are used to show multiple entries at a glance. To navigate quickly +multiple tools are available: -* **Sorting** - click on the header to sort the entries, click a second time for invert sorting -* **Search** - type into the search field on top right to filter entries containing the term -* **Paging** - if there are multiple pages you can navigate with the buttons below -* **Mouse over** - long names or descriptions that are cut off can be read with mouse over +* **Sorting** - click on the header to sort entries, click a second time to + invert sorting +* **Search** - type into the search field in the top right to filter entries + containing the search term +* **Paging** - if there are multiple pages you can navigate with the buttons + below +* **Mouse over** - long names or descriptions that are cut off can be read + with mouse over Configuration ------------- You can configure the display of tables in your :doc:`/tools/profile` +Available settings: -* amount of entries per page -* whether to show aliases +* Amount of entries per page +* Show aliases From 446f469f0a5dc2dd99f4aedd97dd87940cf466dd Mon Sep 17 00:00:00 2001 From: NinaBrundke Date: Mon, 2 Dec 2024 13:58:33 +0100 Subject: [PATCH 3/7] Manual adaptions and corrections for FAQ, Features, Index, and Overview --- sphinx/source/faq.rst | 87 +++++++++++++++++++------------------- sphinx/source/features.rst | 12 +++--- sphinx/source/overview.rst | 4 +- 3 files changed, 51 insertions(+), 52 deletions(-) diff --git a/sphinx/source/faq.rst b/sphinx/source/faq.rst index 93f431fdc..1f7717372 100644 --- a/sphinx/source/faq.rst +++ b/sphinx/source/faq.rst @@ -10,52 +10,52 @@ How to manage multiple projects or case studies Tag: technical -There are two main approaches how to deal with multiple projects or case -studies. +There are two main approaches on how to deal with multiple projects or case +studies: Multiple instances ****************** -If every project has their own instance (installation) of OpenAtlas than you +If every project has their own instance (installation) of OpenAtlas then you don't have to worry about separating the data later. But it would also mean that data can't be used together, at least not directly. Shared instance *************** -Projects (or case studies) can use the same instance which can be especially -useful if they share data, e.g. information about places or persons. +Projects (or case studies) can use the same instance which can be useful if +they share data, such as information about places or persons. For data separation a custom :doc:`/entity/type` can be created, usually called **Case study**, which can be: -* attached to multiple classes (probably most of them) -* set to **multiple** use so that e.g. a place can be part of multiple case +* Attached to multiple classes (probably most of them) +* Set to **multiple** use so that a place can be part of multiple case studies -* set to **required** so that users don't forget to enter it +* Set to **required** so that users don't forget to choose at least one Later on, e.g. when running analyses or developing a presentation site for one -case study, this type can be used to separate the data via the -:doc:`/technical/api`. +case study, data can be filtered by case studies to separate the data sets +via the :doc:`/technical/api`. How does data access work ------------------------- Tag: design decision -In OpenAtlas it can be chosen if and when to make data public but: +If and when data saved in OpenAtlas is shared can be chosen at any point, but: * All registered users have access to all model data * Either **all** data is made public via the :doc:`/technical/api` or **none** -* Presentation sites can filter which data (e.g. which case study) to show +* Presentation sites can filter which data (e.g. which case study) is shown via the API * Showing images is a special case because it also depends on licenses and the :doc:`/admin/iiif` server There is no option (or plans to add one) to **hide** parts of the data for -specific users. Reasons for this is that it would conflict with one of our core -values (open) but there are also practical reasons, e.g. to avoid duplicates. -If a strict separation is needed, using multiple OpenAtlas instances would -likely be a better alternative. +specific users as that conflicts with one of our core value - to be open. +Furthermore, there are practical reasons, e.g. to avoid duplicates. +If a strict separation is needed, using multiple OpenAtlas instances might +be a better solution. How to enter professions ------------------------ @@ -67,7 +67,7 @@ them to a group. This group consists of people with the same profession. Say you want to enter our lead developer Alex into the database: create a group named ‘OpenAtlas’ and connect him to that group in the respective form. Here you -can also pick the role he has in that group from a list of types. For a more +can pick the role he has in that group from a list of types. For a more detailed tutorial on how to enter professions, have a look :doc:`here`. @@ -75,31 +75,31 @@ detailed tutorial on how to enter professions, have a look How to make files available for the public ------------------------------------------ -In case it is planned to share files with the public, e.g. at a presentation -site or a public archive, several criteria have to be met. +If you plan on sharing files with the public, e.g. on a presentation +site or a public archive, several criteria have to be met: Criteria checked by the software ******************************** * The file must exist * A license has to be specified -* It has to be marked with **public sharing allowed** +* The file has to be marked with **public sharing allowed** -In case these criteria aren't met, a file won't be: +In case these criteria aren't met, a file: -* Shared via the :doc:`/technical/api` -* Won't show up on presentation sites developed by the OpenAtlas team -* Won't be included in case the long time archiving - system `ARCHE `_ is used +* Will not be shared via the :doc:`/technical/api` +* Will not show up on presentation sites developed by the OpenAtlas team +* Will not be included in long-term archiving via + `ARCHE `_ -But be aware that although the file itself won't be shared, the file -information (e.g. filename) will still be available (e.g. shown on a +Be aware that although the file itself won't be shared, the file +information (such as filenames, etc.) will still be available (e.g. shown on a presentation site). -At **file** -> **list** at the top you find counts for: +At **file** -> **list** you find counts for: -* public files -* public files with a missing license -* public files with a license but without creator (which many licenses require) +* Public files +* Public files with a missing license +* Public files with a license but without creator (which many licenses require) Criteria checked by users ************************* @@ -121,15 +121,15 @@ Tag: design decision A free text entry field would lead to lots of unstructured data. Unstructured data can not be processed automatically and would result in it -not being presented nor searchable in the OpenAtlas system as well as in a -presentation site that presents your data. Therefore, we made the decision, not -to include free text types into the OpenAtlas system. Solutions to this problem -are very case specific, but you could: - -* use the already provided description fields to enter any type of free text - (keep in mind that this also comes with restrictions on how to present this - data at a presentation site) -* create a new tree of project specific types for as many cases as possible +neither being presented nor searchable in the OpenAtlas system as well as in a +presentation site. Therefore, we made the decision, not to include free text +types into the OpenAtlas system. Solutions to this problem are very case +specific, but you could: + +* Use the provided description field to enter any type of free text + (keep in mind that this also comes with restrictions on how to present the + data on a presentation site) +* Create a new tree of project specific types for as many cases as possible and structure your data with them – for a step by step tutorial how to create new types, click :doc:`here`. @@ -148,9 +148,8 @@ be used by other systems via the :doc:`/technical/api`, and these systems are not necessarily able to handle these formats. Another reason is that these formats might change over time. All in all it is -more important for us that acquired data is as interoperable, as long as +more important that acquired data is as interoperable for as long as possible. -Of course the situation is different for e.g. presentation sites for OpenAtlas -data. There it would be possible to e.g. add manual formatted texts where -needed. +For presentation sites and the alike it is possible to add e.g. manually +formatted texts, etc. where needed. diff --git a/sphinx/source/features.rst b/sphinx/source/features.rst index 2479228ed..937f20018 100644 --- a/sphinx/source/features.rst +++ b/sphinx/source/features.rst @@ -9,7 +9,7 @@ software. The features listed below contribute significantly to this effort. Model ----- The data model specifies the structure in which the information is stored -within the database. The use of an ontology, for example, allows the data to be +within the database. The use of an ontology allows the data to be combined more easily with information from other projects and is consistent with the `FAIR principles `_. @@ -18,8 +18,8 @@ The OpenAtlas :doc:`/model/index` is based on the international standard of field of humanities. * :doc:`Types ` can be used to adapt for specific research topics -* :doc:`Reference Systems ` for - Linked Open Data (LOD) +* :doc:`Reference Systems ` help create Linked Open + Data (LOD) * Mapping :doc:`spatial ` and :doc:`temporal ` uncertainty * :doc:`Archaeological finds ` @@ -29,7 +29,7 @@ field of humanities. User Interface -------------- -The user interface allows for easy and quick entry of information into the +The user interface (UI) allows for easy and quick entry of information into the database, while the data is mapped in the background according to the specifications of the data model (see above). Due to the use of :doc:`types `, this can be designed @@ -81,8 +81,8 @@ to import data into the database system. User Management --------------- -The User Management Features allows the activation of users for the own -OpenAtlas instance. These can also be divided into different user groups with +The User Management Features allows the activation of users for your +OpenAtlas instance. They can be divided into different user groups with different permissions. In addition, the user interface can be adapted to the user's own preferences via settings. diff --git a/sphinx/source/overview.rst b/sphinx/source/overview.rst index ce20d7acb..dd5aa4721 100644 --- a/sphinx/source/overview.rst +++ b/sphinx/source/overview.rst @@ -3,8 +3,8 @@ Overview .. toctree:: -The overview page can be reached when clicking on the logo at the upper left. -When logged in following is displayed: +The overview page can be reached by clicking on the logo in the upper left +corner. When logged in following information is displayed: * An overview table of already entered entities * Links to manual, :doc:`/model/index` and :doc:`/tools/network` From 61004292c09254242b7a1102efecf9d34d777dfa Mon Sep 17 00:00:00 2001 From: Alexander Watzinger Date: Mon, 2 Dec 2024 14:05:17 +0100 Subject: [PATCH 4/7] Manual update --- .../manual/.doctrees/environment.pickle | Bin 179335 -> 178853 bytes openatlas/static/manual/.doctrees/faq.doctree | Bin 28968 -> 28715 bytes .../static/manual/.doctrees/features.doctree | Bin 28331 -> 28316 bytes .../static/manual/.doctrees/overview.doctree | Bin 5137 -> 5171 bytes .../tools/anthropological_analyses.doctree | Bin 18071 -> 18123 bytes .../.doctrees/tools/image_annotation.doctree | Bin 8001 -> 8072 bytes .../static/manual/.doctrees/tools/map.doctree | Bin 17181 -> 17482 bytes .../manual/.doctrees/tools/network.doctree | Bin 14026 -> 14167 bytes .../manual/.doctrees/tools/notes.doctree | Bin 5539 -> 5721 bytes .../manual/.doctrees/tools/profile.doctree | Bin 15753 -> 15675 bytes .../tools/radiocarbon_dating.doctree | Bin 7367 -> 7357 bytes .../manual/.doctrees/tools/search.doctree | Bin 11441 -> 11637 bytes .../.doctrees/troubleshooting/display.doctree | Bin 6421 -> 7029 bytes .../troubleshooting/error_codes.doctree | Bin 5229 -> 5934 bytes .../.doctrees/troubleshooting/index.doctree | Bin 3174 -> 3174 bytes .../.doctrees/troubleshooting/login.doctree | Bin 6821 -> 7170 bytes .../static/manual/.doctrees/ui/date.doctree | Bin 14302 -> 14753 bytes .../manual/.doctrees/ui/description.doctree | Bin 4893 -> 5474 bytes .../static/manual/.doctrees/ui/form.doctree | Bin 3017 -> 2997 bytes .../static/manual/.doctrees/ui/menu.doctree | Bin 3543 -> 3539 bytes .../static/manual/.doctrees/ui/name.doctree | Bin 3938 -> 3926 bytes .../static/manual/.doctrees/ui/table.doctree | Bin 6215 -> 6548 bytes openatlas/static/manual/faq.html | 85 +++++++++--------- openatlas/static/manual/features.html | 12 +-- openatlas/static/manual/overview.html | 4 +- openatlas/static/manual/searchindex.js | 2 +- .../tools/anthropological_analyses.html | 14 +-- .../static/manual/tools/image_annotation.html | 29 +++--- openatlas/static/manual/tools/map.html | 55 ++++++------ openatlas/static/manual/tools/network.html | 31 +++---- openatlas/static/manual/tools/notes.html | 18 ++-- openatlas/static/manual/tools/profile.html | 27 +++--- .../manual/tools/radiocarbon_dating.html | 4 +- openatlas/static/manual/tools/search.html | 32 +++---- .../manual/troubleshooting/display.html | 23 ++--- .../manual/troubleshooting/error_codes.html | 20 +++-- .../static/manual/troubleshooting/index.html | 4 +- .../static/manual/troubleshooting/login.html | 34 ++++--- openatlas/static/manual/ui/date.html | 48 +++++----- openatlas/static/manual/ui/description.html | 6 +- openatlas/static/manual/ui/form.html | 2 +- openatlas/static/manual/ui/menu.html | 4 +- openatlas/static/manual/ui/name.html | 10 ++- 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    How to manage multiple projects or case studies

    Tag: technical

    -

    There are two main approaches how to deal with multiple projects or case -studies.

    +

    There are two main approaches on how to deal with multiple projects or case +studies:

    Multiple instances

    -

    If every project has their own instance (installation) of OpenAtlas than you +

    If every project has their own instance (installation) of OpenAtlas then you don’t have to worry about separating the data later. But it would also mean that data can’t be used together, at least not directly.

    Shared instance

    -

    Projects (or case studies) can use the same instance which can be especially -useful if they share data, e.g. information about places or persons.

    +

    Projects (or case studies) can use the same instance which can be useful if +they share data, such as information about places or persons.

    For data separation a custom Type can be created, usually called Case study, which can be:

      -

    • attached to multiple classes (probably most of them)

      • -

    • set to multiple use so that e.g. a place can be part of multiple case +

    • Attached to multiple classes (probably most of them)

      • +

    • Set to multiple use so that a place can be part of multiple case studies

      • -

    • set to required so that users don’t forget to enter it

      • +

    • Set to required so that users don’t forget to choose at least one

    Later on, e.g. when running analyses or developing a presentation site for one -case study, this type can be used to separate the data via the -API.

    +case study, data can be filtered by case studies to separate the data sets +via the API.

    How does data access work

    Tag: design decision

    -

    In OpenAtlas it can be chosen if and when to make data public but:

    +

    If and when data saved in OpenAtlas is shared can be chosen at any point, but:

    • All registered users have access to all model data

    • Either all data is made public via the API or none

      • -

    • Presentation sites can filter which data (e.g. which case study) to show +

    • Presentation sites can filter which data (e.g. which case study) is shown via the API

    • Showing images is a special case because it also depends on licenses and the IIIF server

    There is no option (or plans to add one) to hide parts of the data for -specific users. Reasons for this is that it would conflict with one of our core -values (open) but there are also practical reasons, e.g. to avoid duplicates. -If a strict separation is needed, using multiple OpenAtlas instances would -likely be a better alternative.

    +specific users as that conflicts with one of our core value - to be open. +Furthermore, there are practical reasons, e.g. to avoid duplicates. +If a strict separation is needed, using multiple OpenAtlas instances might +be a better solution.

    How to enter professions

    @@ -157,36 +157,36 @@

    How to enter professionshere.

    How to make files available for the public

    -

    In case it is planned to share files with the public, e.g. at a presentation -site or a public archive, several criteria have to be met.

    +

    If you plan on sharing files with the public, e.g. on a presentation +site or a public archive, several criteria have to be met:

    Criteria checked by the software

    • The file must exist

    • A license has to be specified

      • -

    • It has to be marked with public sharing allowed

      • +

    • The file has to be marked with public sharing allowed

    -

    In case these criteria aren’t met, a file won’t be:

    +

    In case these criteria aren’t met, a file:

      -

    • Shared via the API

      • -

    • Won’t show up on presentation sites developed by the OpenAtlas team

      • -

    • Won’t be included in case the long time archiving -system ARCHE is used

      • +

    • Will not be shared via the API

      • +

    • Will not show up on presentation sites developed by the OpenAtlas team

      • +

    • Will not be included in long-term archiving via +ARCHE

    -

    But be aware that although the file itself won’t be shared, the file -information (e.g. filename) will still be available (e.g. shown on a +

    Be aware that although the file itself won’t be shared, the file +information (such as filenames, etc.) will still be available (e.g. shown on a presentation site).

    -

    At file -> list at the top you find counts for:

    +

    At file -> list you find counts for:

      -

    • public files

      • -

    • public files with a missing license

      • -

    • public files with a license but without creator (which many licenses require)

      • +

    • Public files

      • +

    • Public files with a missing license

      • +

    • Public files with a license but without creator (which many licenses require)

    @@ -209,15 +209,15 @@

    Why can’t a free text field be added via custom typesTag: design decision

    A free text entry field would lead to lots of unstructured data. Unstructured data can not be processed automatically and would result in it -not being presented nor searchable in the OpenAtlas system as well as in a -presentation site that presents your data. Therefore, we made the decision, not -to include free text types into the OpenAtlas system. Solutions to this problem -are very case specific, but you could:

    +neither being presented nor searchable in the OpenAtlas system as well as in a +presentation site. Therefore, we made the decision, not to include free text +types into the OpenAtlas system. Solutions to this problem are very case +specific, but you could:

     @@ -234,11 +234,10 @@

    Why can’t longer texts be formattedAPI, and these systems are not necessarily able to handle these formats.

    Another reason is that these formats might change over time. All in all it is -more important for us that acquired data is as interoperable, as long as +more important that acquired data is as interoperable for as long as possible.

    -

    Of course the situation is different for e.g. presentation sites for OpenAtlas -data. There it would be possible to e.g. add manual formatted texts where -needed.

    +

    For presentation sites and the alike it is possible to add e.g. manually +formatted texts, etc. where needed.

    diff --git a/openatlas/static/manual/features.html b/openatlas/static/manual/features.html index 88981252e..e4e76bf6f 100644 --- a/openatlas/static/manual/features.html +++ b/openatlas/static/manual/features.html @@ -110,7 +110,7 @@

    Features

    Model

    The data model specifies the structure in which the information is stored -within the database. The use of an ontology, for example, allows the data to be +within the database. The use of an ontology allows the data to be combined more easily with information from other projects and is consistent with the FAIR principles.

    The OpenAtlas Model is based on the international standard of @@ -118,8 +118,8 @@

    Model field of humanities.

    • Types can be used to adapt for specific research topics

      • -

    • Reference Systems for -Linked Open Data (LOD)

      • +

    • Reference Systems help create Linked Open +Data (LOD)

    • Mapping spatial and temporal uncertainty

    • Archaeological finds @@ -130,7 +130,7 @@

      Model

      User Interface

      -

      The user interface allows for easy and quick entry of information into the +

      The user interface (UI) allows for easy and quick entry of information into the database, while the data is mapped in the background according to the specifications of the data model (see above). Due to the use of types, this can be designed @@ -188,8 +188,8 @@

      Data Exchange

      User Management

      -

      The User Management Features allows the activation of users for the own -OpenAtlas instance. These can also be divided into different user groups with +

      The User Management Features allows the activation of users for your +OpenAtlas instance. They can be divided into different user groups with different permissions. In addition, the user interface can be adapted to the user’s own preferences via settings.

        diff --git a/openatlas/static/manual/overview.html b/openatlas/static/manual/overview.html index 7f7fd04a2..c3f308ab0 100644 --- a/openatlas/static/manual/overview.html +++ b/openatlas/static/manual/overview.html @@ -96,8 +96,8 @@

        Overview

        -

        The overview page can be reached when clicking on the logo at the upper left. -When logged in following is displayed:

        +

        The overview page can be reached by clicking on the logo in the upper left +corner. When logged in following information is displayed:

        • An overview table of already entered entities

        • Links to manual, Model and Network visualization

          • diff --git a/openatlas/static/manual/searchindex.js b/openatlas/static/manual/searchindex.js index 9d01c46fb..11d983d97 100644 --- a/openatlas/static/manual/searchindex.js +++ b/openatlas/static/manual/searchindex.js @@ -1 +1 @@ -Search.setIndex({"docnames": ["admin/api", "admin/arche", "admin/content", "admin/data_integrity_checks", "admin/execute_sql", "admin/export", "admin/general", "admin/iiif", "admin/import", "admin/index", "admin/mail", "admin/map", "admin/modules", "admin/presentation_site", "admin/user", "admin/vocabs", "entity/actor", "entity/artifact", "entity/event", "entity/feature", "entity/file", "entity/human_remains", "entity/index", "entity/navigation", "entity/place", "entity/reference", "entity/reference_system", "entity/source", "entity/stratigraphic_unit", "entity/type", "examples/archaeological_data", "examples/artifacts", "examples/index", "examples/journey", "examples/letters", "examples/move_event", "examples/places", "examples/profession", 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"link-checker"]], "OpenAtlas classes": [[47, "openatlas-classes"]], "OpenAtlas shortcuts": [[48, "openatlas-shortcuts"]], "OA7 - has relationship to": [[48, "oa7-has-relationship-to"]], "OA8 - appears for the first time in": [[48, "oa8-appears-for-the-first-time-in"]], "OA9 - appears for the last time in": [[48, "oa9-appears-for-the-last-time-in"]], "E77 - Persistent Item": [[48, "e77-persistent-item"]], "E21 Person": [[48, "e21-person"]], "E2 Temporal Entity": [[48, "e2-temporal-entity"]], "Radiocarbon dating type": [[48, "radiocarbon-dating-type"]], "Reference Systems": [[49, "reference-systems"]], "References and Files": [[49, "references-and-files"]], "Introduction": [[51, "introduction"]], "Quick Start Guide": [[51, "quick-start-guide"]], "1. UI access": [[51, "ui-access"]], "2. 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          Sex Estimation

        • Glabella (W = 3)

          • @@ -174,8 +174,8 @@

          Sex Estimation

        • -2 to -0.7: female

          • diff --git a/openatlas/static/manual/tools/image_annotation.html b/openatlas/static/manual/tools/image_annotation.html index b8e120089..1f9dafbbe 100644 --- a/openatlas/static/manual/tools/image_annotation.html +++ b/openatlas/static/manual/tools/image_annotation.html @@ -106,29 +106,30 @@

          Image annotation

          The image annotation feature allows for marking areas on an image and adding -a text and/or link it to an entity. E.g. a person on a group picture or an -artifact at an excavation site image.

          +a text and/or link to an entity. In that way a person in a group picture +or an artifact on an excavation photo can be linked to the entity in OpenAtlas.

          Prerequisite for image annotation is an enabled and configured IIIF server.

          Usage

          -

          At a File detail view click on the Enable IIIF view button -below the image if it wasn’t converted already.

          -

          Once the image was converted you can click on the Annotate link below the +

          In a File’s detail view, click the Enable IIIF view button +below the image, if it is not converted already. +Once the image is converted click the Annotate link below the image and the annotation view will open in a new tab.

          -

          In the image annotation view you can see the image in an IIIF viewer and a form -for new annotations and a list of already entered annotations with links to -edit or delete them.

          +

          In the image annotation view you can see the image in an IIIF viewer as +well as a form for new annotations including a list of already saved +annotations. Links to edit or delete previous annotations are als porvided.

          Form fields

            -

          • IIIF image view - here you can use the rectangle draw button on the left -side to mark an area.

            • -

          • Annotation - you can enter a description here

            • -

          • Entity - you can link an entity here

            • +

          • IIIF image view - click the button on the left to draw a rectangle +to mark the desired area.

            • +

          • Annotation - enter a description

            • +

          • Entity - link to an entity

          Be aware that the Entity selection only offers entities that are already -linked to the file. This is to guarantee that the entity is also linked via -the model (which the image annotation is not part of).

          +linked to the file. This guarantees that each selectable entity is also +linked to the file via the model. Immage annotation does not create new +model links in the background!

      diff --git a/openatlas/static/manual/tools/map.html b/openatlas/static/manual/tools/map.html index d50b238c3..b46cc060b 100644 --- a/openatlas/static/manual/tools/map.html +++ b/openatlas/static/manual/tools/map.html @@ -106,26 +106,30 @@

      Map

      The interactive map (based on Leaflet) is a tool -to present and enter the location of places. PostGIS -is used for creating and manipulating spatial data.

      +to present and enter a place’s location. +PostGIS is used for creating and manipulating +spatial data.

      WKT import

      -

      With the edit icon a WKT text can be imported. +

      With the edit icon WKT text can be imported. Clicking this button will open a new popup where a WKT geometry can be entered. If the geometry is valid, the draw geometry button will be enabled. By clicking this button the geometry will be drawn on the map and the respective @@ -139,33 +143,32 @@

      WKT import

      Adding new geometries

      -

      When in insert or update mode of a place you have following options available -(can be combined):

      +

      When in insert or update mode of a place you have the following options +(more than one can be used):

        -

      • Set a marker/point at the position where the physical thing is located.

        • -

      • Draw a line connected to a physical objects spatial characteristics, e.g. -the course of a road.

        • -

      • Draw the shape of a physical thing if the precise extend is known.

        • -

      • Draw the area in which the physical thing is located. E.g. if its precise -shape is not known but known to be within a certain area.

        • +

      • Set a marker/point at the position where the physical thing is located

        • +

      • Draw a line connected to a physical object’s spatial characteristics, e.g. +the course of a road or the bed of a river

        • +

      • Draw the shape of a physical thing if the precise extend is known

        • +

      • Draw an area in which the physical thing is located with 100% certainty

      GeoNames

      -

      The GeoNames ID field can either be manually entered or imported from a map -search result.

      -

      The checkbox exact match can be used if there is a high -degree of confidence that the concepts can be used interchangeably. By default -it is a close match, which means that the concepts are sufficiently similar +

      The GeoNames ID field can either be entered manually or imported +from the map’s search result

      +

      Exact match should be used if there is a high degree of confidence that +the concepts can be used interchangeably. By default it is a +close match, which means that the concepts are sufficiently similar that they can be used interchangeably in some information retrieval applications. Please refer to SKOS for further information.

      Map Overlay

      -

      If you have the module map overlay activated in your Profile, added +

      If the module map overlay is activated in the Profile settings, added overlays for places will be visible on the map by default and can be toggled -at map layer button at the upper right corner.

      +with the map layer button at the upper right corner.

      To insert new overlays (only available for editors and admins) go to the view of a specific place. After adding an image file in the file tab you can click link in the overlay column to enter coordinates (Easting and Northing) for:

      @@ -175,7 +178,7 @@

      Map Overlay

      -

      With the integration of D3.js data can be visualized as -a network graph available at the Network visualization button at the -Overview or as an egocentric network at the entity detail view.

      -

      Classic is the default but it can be switched to other types at the top of -the visualization pages.

      +

      With the integration of D3.js, data can be visualized as +a network graph. The graph, specific for each OpenAtlas instance, is available +via the Network visualization button at the Overview or as an +egocentric network at the entity detail view.

      +

      Three different layouts are provided. Classic is the default setting but +it can be switched to other types at the top of the visualization pages.

      ../_images/network_classic.png
      @@ -153,14 +154,13 @@

      3D

      Options

        -

      • Colors - you can change the node color of classes

        • -

      • Depth - in egocentric networks you can define the link depth

        • -

      • Show orphans - if nodes without connections should be shown too

        • -

      • Width - the width of the resulting image in pixel

        • -

      • Height - the height of the resulting image in pixel

        • -

      • Charge - a parameter for the distance between entries which are not -connected

        • -

      • Distance - a parameter for the distance between connected entries

        • +

      • Colors - changes the node color of classes

        • +

      • Depth - defines the link depth in egocentric networks

        • +

      • Show orphans - select if nodes without any connections are displayed

        • +

      • Width - define width of the displayed image in pixel

        • +

      • Height - define height of the displayed image in pixel

        • +

      • Charge - select the distance between unconnected entities

        • +

      • Distance - select the distance between connected entities

      @@ -175,8 +175,9 @@

      In case of performance issues

      If an image is available (classic mode only) you can download it as PNG. Be aware that the resulting image is exactly what you see in this moment so -you may want to change width and height in the options before. Also you may -want to choose a zoom level where labels are readable.

      +you may want to change width and height in the options before downloading. +Set the zoom level according to your needs to ensure the labels are still +readable.

      diff --git a/openatlas/static/manual/tools/notes.html b/openatlas/static/manual/tools/notes.html index d7848e06e..3a76ac2ed 100644 --- a/openatlas/static/manual/tools/notes.html +++ b/openatlas/static/manual/tools/notes.html @@ -103,17 +103,17 @@

      Notes

      -

      Notes are an additional tool for your workflow, e.g. to add a personal -reminder to an entity. They are not part of the data model -and won’t show in presentation sites or be archived.

      +

      Notes are an additional tool for your workflow and can be used to add a +personal reminder to an entity, etc.. They are not part of the data +model and won’t be shown on presentation sites or be archived.

        -

      • Notes can be added at the notes tab when viewing an entity

        • +

      • Notes can be added by using the notes tab when viewing an entity

      • Notes will be displayed at the entity view and at the Overview

        • -

      • Notes set to private (default) are only visible to you, public can be -seen by everybody

        • -

      • Notes will get deleted if the entity is deleted by you or anybody else

        • -

      • Admins or manager can set notes of other users to private -(e.g. in case they got inactive)

        • +

      • Notes set to private (default) are only visible to you, public notes can be +seen by everybody with access to the OpenAtlas instance

        • +

      • Notes will be deleted if the entity is deleted by you or anybody else

        • +

      • Admins or manager can set notes of other users to private (e.g. in case +they are inactive)

      diff --git a/openatlas/static/manual/tools/profile.html b/openatlas/static/manual/tools/profile.html index bee4f4833..c2c5b85c1 100644 --- a/openatlas/static/manual/tools/profile.html +++ b/openatlas/static/manual/tools/profile.html @@ -105,13 +105,12 @@

      Profile

      -

      When logged in you can access your profile at the right top of the site. -There you can edit personal information and adapt the user interface to your +

      When logged in, you can access your profile at the right top of the page. +Here you can edit personal information and adapt the user interface to your preferences.

      Change password

      -

      When clicking on Change password you have to enter the current password and -a new one twice.

      +

      To Change password enter the current password and a new one twice.

      General

      @@ -128,30 +127,30 @@

      General

      Modules

      Here you can adjust shown interface elements to your preferences. You still see -e.g. already entered hours, minutes and seconds even when you deactivate them -but the interface elements to add them will disappear.

      +unselected elements such as hours, minutes and seconds in a form, when data +was already entered in those fields.

        -

      • Map Overlay - to see overlays on the Map or insert new ones -(editor or above)

        • +

      • Map Overlay - needed to see overlays on the Map as +well as insert new overlays and edit them

      • Time - show time fields in forms, see Date

      Display

        -

      • Language - select your language for the user interface

        • -

      • Table rows - amount of rows that are shown on one table page

        • +

      • Language - select your preferred language for the user interface

        • +

      • Table rows - amount of rows that are shown

      • Show aliases in tables - show aliases of actors and places in tables and make them searchable

      • Show created and modified information - show when/by whom an entry was created/updated

        • -

      • Show import information - show original project and identifier at entities +

      • Show import information - show project and identifier for entities that were imported from another project

      • Show CIDOC class - show the corresponding CIDOC class at entity view

      • Show API links - show a buttons for API views at -entities

        • -

      • Default map zoom - define the lowest zoom level to include all features in -a Map view

        • +entity view

        +

      • Default map zoom - define the lowest zoom level to include all +features in a Map view

      • Max map zoom - adjust how far you can zoom into a Map.

      • Show icons in tables - if activated small images of files are shown in tables

        • diff --git a/openatlas/static/manual/tools/radiocarbon_dating.html b/openatlas/static/manual/tools/radiocarbon_dating.html index 86757d510..76670153d 100644 --- a/openatlas/static/manual/tools/radiocarbon_dating.html +++ b/openatlas/static/manual/tools/radiocarbon_dating.html @@ -109,14 +109,14 @@

        Radiocarbon DatingAnthropological Analyses it can be accessed by pressing the Tools button displayed on the level of stratigraphic units.

        ../_images/tool_button.png -

        After then pressing the Radiocarbon dating button, you can add and/or edit +

        After pressing the Radiocarbon dating button, you can add and/or edit the following information:

        • Laboratory ID - an alphanumerical abbreviation of the lab that conducted the analyses, e.g. VERA for Vienna Environmental Research Accelerator

        • Specimen ID - a numeric ID given to the sample by the conducting laboratory

          • -

        • Radiocarbon year - Result if the analysis in years, e.g. 1015

          • +

        • Radiocarbon year - Result of the analysis in years, e.g. 1015

        • Range - Accounts for the possible error of the measurement and is stated in the result as +/- value in years, e.g. +/- 30. In the form you only state the amount of years, adding +/- into the form field is not necessary

          • diff --git a/openatlas/static/manual/tools/search.html b/openatlas/static/manual/tools/search.html index ffb85b56f..663308c1c 100644 --- a/openatlas/static/manual/tools/search.html +++ b/openatlas/static/manual/tools/search.html @@ -105,38 +105,40 @@

          Search

          -

          To allow quick navigation, even in a big data set, the global full-text search -can find entities containing the search term in their name or aliases. It is:

          +

          To allow quick navigation even in big data sets, the global full-text search +can find entities containing the search term in their name or aliases. The +search is:

            -

          • Not case sensitive, e.g. aDa lovelacE will find Ada Lovelace

            • -

          • Full text, e.g. da Love will find Ada Lovelace

            • -

          • Unaccented, e.g. Lovē will find Love and vice-versa

            • -

          • You can use % as a placeholder, e.g. Ada L%ce will +

          • Not case sensitive, so aDa lovelacE will find Ada Lovelace

            • +

          • Full text, therefore da Love will find Ada Lovelace

            • +

          • Unaccented, Lovē will find Love and vice-versa

            • +

          • You can use % as a placeholder, so Ada L%ce will find Ada Lovelace

          -

          Additionally, a refined advanced search can be used to filter the results -where more options are available:

          +

          Additionally, an advanced search can be used to filter the results when more +than one option is available:

            -

          • Only entities edited by me - show only entities which you have created or -edited.

            • +

          • Only entities edited by me - shows only entities which you have +created or edited.

          • Also search in description - searches in description and date comments

            • -

          • Classes - search only in selected classes, e.g. Place

            • +

          • Classes - searches only in selected classes, such as place or actor

          • Dates

            • This filter is only active if at least the from or to year is filled out.

            • If only a year is provide the from date will be YYYY-01-01, the to date will be YYYY-12-31

              • -

            • If only a year and a month is provided it will be the last of this month.

              • +

            • If only a year and a month is provided it will show data from the first +to the last day of the month

            • If the option Include dateless entities is checked, entities without -dates will be found too.

              • +dates will be displayed as well

          Because entities can have up to 4 date values (time span for begin and time span for end) they will be added to the result if at least one date meets the -criteria. E.g. a person that lived from 1540 to 1560 will be found when -the from year value is 1550.

          +criteria. Therefore, a person that lived from 1540 to 1590 will be found +when the from year value is 1550.

      diff --git a/openatlas/static/manual/troubleshooting/display.html b/openatlas/static/manual/troubleshooting/display.html index 6f42630dd..a762c4f08 100644 --- a/openatlas/static/manual/troubleshooting/display.html +++ b/openatlas/static/manual/troubleshooting/display.html @@ -100,31 +100,34 @@

      Display Errors

      -

      This is a general topic in case there are display errors like elements are out -of place, missing or not working as intended. There can be many reasons for -these errors and they have probably nothing to do with you but here are some -suggestions you can try on your side to fix them.

      +

      This is a general topic in case there are display errors such as out of place +elements, missing or not working items. Many reasons can cause errors +and a malfunction most likely was not caused by you but here are +some suggestions what you can try on your side to fix them.

      Browser Version

      Make sure your browser is up to date. We try to support all major browsers but -because OpenAtlas uses advanced features a current version may be required.

      +due to OpenAtlas using advanced features a current version may be required.

      Refresh your Browser

      Sometimes browser cache (remember) older content. A refresh should solve this -problem. E.g. in Firefox you can do this with the F5 key.

      +problem. For example, in Firefox this can be done by pressing the +F5 key.

      JavaScript

      JavaScript is required for advanced features to work. In case you haven’t -activated JavaScript you should see a warning message at the top of the site.

      +activated JavaScript in our browser settings, a warning message will be +displayed.

      If the problem persists

      -

      If none of the above solutions work please report this bug. There is a -Feedback link on the start page after you logged in. It would be very +

      If none of the above solutions work, please report the bug to us. There is a +Feedback link at the start page after you logged in. It would be very helpful if you provide which browser/version you are using and a screenshot -showing the problem.

      +showing the problem. You can also go to +redmine directly and report the issue there.

      diff --git a/openatlas/static/manual/troubleshooting/error_codes.html b/openatlas/static/manual/troubleshooting/error_codes.html index 5fa9c92f1..abbbc5887 100644 --- a/openatlas/static/manual/troubleshooting/error_codes.html +++ b/openatlas/static/manual/troubleshooting/error_codes.html @@ -100,22 +100,26 @@

      Error Codes

      -

      Here are some explanations for error codes you may encounter. Please let us know if you think you -encountered a bug.

      +

      Here are some explanations for error codes you may encounter. Please let us +know if you think you encountered a bug. The best way to report an issue is +via out issuetracker at redmine

      403 - Forbidden

      -

      You are trying to access a page that you don’t have permissions for. E.g. trying to edit an entity -as user with a read only group. The user interface shouldn’t provide you with links to sites -that are restricted for your user. Maybe you used an obsolete link or bookmark.

      +

      You are trying to access a page that you don’t have permissions to access. +This can happen if you try to edit an entity as user with read only +status. The user interface shouldn’t provide you with links to sites +that are restricted for your user, so maybe you used an obsolete link or +bookmark. If this happens regularly, please report the issue.

      404 - File not found

      -

      The site you requested cannot be found. Maybe you used an obsolete link or bookmark.

      +

      The site you requested cannot be found. Maybe you used an obsolete link or +bookmark.

      418 - I’m a teapot

      -

      You see this message if you tried to access an entity with an id that doesn’t exist (anymore). -Maybe you used an obsolete link or bookmark.

      +

      This message is displayed if you tried to access an entity with an ID that +doesn’t exist (anymore). Maybe you used an obsolete link or bookmark.

      diff --git a/openatlas/static/manual/troubleshooting/index.html b/openatlas/static/manual/troubleshooting/index.html index b813f26bb..13e864bd5 100644 --- a/openatlas/static/manual/troubleshooting/index.html +++ b/openatlas/static/manual/troubleshooting/index.html @@ -97,8 +97,8 @@

      Troubleshooting

      -

      Here you find help and suggestions for common issues. In case this doesn’t solves the -problem please report the issue.

      +

      Here you find help and suggestions for common issues. In case this doesn’t +solves the problem please report the issue.

      • Login
        • diff --git a/openatlas/static/manual/troubleshooting/login.html b/openatlas/static/manual/troubleshooting/login.html index 91ef75bed..c0ad01aca 100644 --- a/openatlas/static/manual/troubleshooting/login.html +++ b/openatlas/static/manual/troubleshooting/login.html @@ -100,29 +100,35 @@

        Login

        -

        Proceed according to the error message.

        +

        Depending on the issue, please try the following solutions to log in.

        Wrong Password

        -

        You can activate the show password checkbox to see the entered password and make sure that the -problem isn’t keyboard related, e.g. capslock is turned on.

        -

        You can request a new password when clicking -Forgot your password? which is located under login button if email was set up.

        +

        You can activate the show password checkbox to see the entered password +and make sure that the problem isn’t keyboard related, e.g. if capslock is +turned on.

        +

        You can request a new password by clicking the +Forgot your password? link. It is directly located underneath the login +button. This is only possible if an email address was provided in the +profile settings previously.

        -

        No user with this name found.

        +

        No user with this name found

        Either you misspelled the username or the user doesn’t exist (anymore).

        -

        If there is a Forgot your password? link below the login you can request a new password with -the email you are registered with. With the new password you’ll also receive your username.

        +

        If there is a Forgot your password? link below the login button you can +request a new password. The information will be sent to the provided email. +A new username is provided together with the password.

        -

        This user is not activated.

        -

        Your user was deactivated. If you think this to be a mistake please contact your project manager.

        +

        This user is not activated

        +

        Your user was deactivated. If you think this was done by mistake, please +contact your project manager.

        -

        Too many login attempts.

        -

        For security reasons (e.g. automatic attacks) the login gets locked after a few failed attempts. -Number of failed attempts and minutes to wait until you can try again depend on project specific -settings but in most cases you can try again after a few minutes.

        +

        Too many login attempts

        +

        For security reasons (e.g. automatic attacks) the login gets locked after a +few failed attempts. The number of failed attempts and minutes to wait until +you can try again depend on project specific settings. If you can’t try +again after a few minutes, please contact your project manager.

      diff --git a/openatlas/static/manual/ui/date.html b/openatlas/static/manual/ui/date.html index a77740907..0243748af 100644 --- a/openatlas/static/manual/ui/date.html +++ b/openatlas/static/manual/ui/date.html @@ -93,29 +93,30 @@

      Date

      CIDOC based OpenAtlas shortcuts: OA8 (begins in) and OA9 (ends in)

      -

      Date input fields in forms are initially hidden and can be shown with -clicking on Show beside the Date label.

      -

      To manage uncertainty in time up to 4 dates can be used: a time span for the -beginning and a time span for the ending. You find detailed examples here: +

      Date input fields in forms are initially hidden and can be shown after +clicking on the Show button next to the Date label.

      +

      To manage uncertainty in time up to four dates can be used: a time span for the +beginning with start and end date as well as and a time span for the end, +also with a beginning and end date. Find detailed examples here: Time Spans

      ../_images/date1.png

      Exact date

      -

      For example if you knew the exact birth of an actor you could enter -1356-12-23 in the first row.

      +

      If you know the exact birth of an actor you could enter +1356-12-23 in the first row of the date field.

      Time span

      -

      If you are unsure e.g when a Church was destroyed you could use both end -dates. Chose a wide enough -span where you are sure it had happened, e.g. the fist decade of 1800.

      -
        -

      • enter in the first end year: 1800

        • -

      • enter in the second end year: 1809

        • -
      -

      Missing days and months are filled out so that the result will be -1800-01-01 to 1809-12-31.

      +

      If you are unsure when e.g. a Church was destroyed, you can use both end +dates to enter a timespan. Chose a wide enough range to make sure the event +lies in between those dates with 100% certainty. So, to record a date within +the fist decade of 1800, enter: +* 1800 into the first end row of the date field +* 1809 into the second end row of the date field

      +

      Days and months are filled in automatically if not stated by you. The result +will therefor be 1800-01-01 to 1809-12-31.

      Autocomplete dates

      -

      If not an exact date was entered, the system automatically creates -a time span. For example, if only the first year is entered, it will be -converted to a timespan of this year. For example:

      +

      If a date but not an exact date was entered into the form, the system +automatically creates a time span. For example, if only a year is +entered in the first row, a timespan of this year will be saved. +For example:

      -

      Additional fields if the time module is activated in Profile or -a time was already entered:

      +

      Additional fields for hour, minute and second appear if the time module is +activated in the Profile or if that information was already +entered for that entity:

      +

      Possible values:

      • Hour: 0 to 23

      • Minute: 0 to 59

        • @@ -139,7 +142,8 @@

        Date year or similar. Most limitations come from the database PostgreSQL which in turn uses the Proleptic Gregorian calendar. -So there is no year zero (one year before year 1 is the year 1 BC).

        +So there is no year zero (one year before year 1 is the year 1 BC) and dates +before the year 4713 BC can not be recorded.

        diff --git a/openatlas/static/manual/ui/description.html b/openatlas/static/manual/ui/description.html index 5d3044f08..536158d6a 100644 --- a/openatlas/static/manual/ui/description.html +++ b/openatlas/static/manual/ui/description.html @@ -96,10 +96,12 @@

        Description

      • A description can be searched for in the advanced Search.

        • -

      • Almost all special characters are supported like e.g. Cyrillic characters or -mathematical symbols.

        • +

      • Almost all special characters are supported like Cyrillic characters or +mathematical symbols for example.

      • There are no formatting options (except line breaks) to keep data usable for different systems.

        • +

      • Keep in mind that as much information as possible should be covered by +using types for facilitating presentation on a presentation site

      diff --git a/openatlas/static/manual/ui/form.html b/openatlas/static/manual/ui/form.html index 3401e2acc..34a76e8e4 100644 --- a/openatlas/static/manual/ui/form.html +++ b/openatlas/static/manual/ui/form.html @@ -90,7 +90,7 @@

      Form

      -

      Forms are used for data entry. asterisk. Required fields are marked with an asterisk *.

      +

      Forms are used for data entry. Required fields are marked with an asterisk *.

      • Name
          diff --git a/openatlas/static/manual/ui/menu.html b/openatlas/static/manual/ui/menu.html index b984e415c..4239a997e 100644 --- a/openatlas/static/manual/ui/menu.html +++ b/openatlas/static/manual/ui/menu.html @@ -90,8 +90,8 @@ diff --git a/openatlas/static/manual/ui/name.html b/openatlas/static/manual/ui/name.html index 5aa51525d..6ea9384b4 100644 --- a/openatlas/static/manual/ui/name.html +++ b/openatlas/static/manual/ui/name.html @@ -92,10 +92,12 @@

          Name

          -

          The name field is one of the few required fields which are marked with an asterisk.

          -

          It’s quite important since it is used to find entries in tables or with the global Search.

          -

          Duplicate names are allowed but if they don’t differ in e.g. the standard type, it could be -difficult to find the right one in a table.

          +

          The name field is one of the few required fields which are marked with an +asterisk. +It’s important to choose a fitting name for every entry as it is used to +find data in tables and within the global Search.

          +

          Duplicate names are allowed but if they don’t differ in e.g. the standard +type, it will become difficult to differentiate them from each other.

      diff --git a/openatlas/static/manual/ui/table.html b/openatlas/static/manual/ui/table.html index 0560a7987..143ba118b 100644 --- a/openatlas/static/manual/ui/table.html +++ b/openatlas/static/manual/ui/table.html @@ -92,19 +92,25 @@

      Table

      -

      Tables are used to show multiple entries at a glance. To navigate quickly multiple tools are available:

      +

      Tables are used to show multiple entries at a glance. To navigate quickly +multiple tools are available:

        -

      • Sorting - click on the header to sort the entries, click a second time for invert sorting

        • -

      • Search - type into the search field on top right to filter entries containing the term

        • -

      • Paging - if there are multiple pages you can navigate with the buttons below

        • -

      • Mouse over - long names or descriptions that are cut off can be read with mouse over

        • +

      • Sorting - click on the header to sort entries, click a second time to +invert sorting

        • +

      • Search - type into the search field in the top right to filter entries +containing the search term

        • +

      • Paging - if there are multiple pages you can navigate with the buttons +below

        • +

      • Mouse over - long names or descriptions that are cut off can be read +with mouse over

      Configuration

      -

      You can configure the display of tables in your Profile

      +

      You can configure the display of tables in your Profile +Available settings:

        -

      • amount of entries per page

        • -

      • whether to show aliases

        • +

      • Amount of entries per page

        • +

      • Show aliases

      From 30a303a2f4e6f7070cada95052d9c82daf95498f Mon Sep 17 00:00:00 2001 From: Alexander Watzinger Date: Mon, 2 Dec 2024 14:16:05 +0100 Subject: [PATCH 5/7] Undo file permission changes --- files/export/.gitignore | 0 files/processed_images/resized/.gitignore | 0 files/uploads/.gitignore | 0 3 files changed, 0 insertions(+), 0 deletions(-) mode change 100755 => 100644 files/export/.gitignore mode change 100755 => 100644 files/processed_images/resized/.gitignore mode change 100755 => 100644 files/uploads/.gitignore diff --git a/files/export/.gitignore b/files/export/.gitignore old mode 100755 new mode 100644 diff --git a/files/processed_images/resized/.gitignore b/files/processed_images/resized/.gitignore old mode 100755 new mode 100644 diff --git a/files/uploads/.gitignore b/files/uploads/.gitignore old mode 100755 new mode 100644 From 1402a90b927db5ea7409e5d3a9f2b1fd4d48683b Mon Sep 17 00:00:00 2001 From: Alexander Watzinger Date: Tue, 3 Dec 2024 15:48:35 +0100 Subject: [PATCH 6/7] Refactord orphan functions --- openatlas/views/admin.py | 167 +++++++++++++++++++++------------------ 1 file changed, 90 insertions(+), 77 deletions(-) diff --git a/openatlas/views/admin.py b/openatlas/views/admin.py index 684d6dc71..e69b5a70d 100644 --- a/openatlas/views/admin.py +++ b/openatlas/views/admin.py @@ -489,11 +489,20 @@ def orphans() -> str: table=Table(['name', 'size', 'date', 'ext'])), 'orphaned_annotations': Tab( 'orphaned_annotations', - table=Table(['image', 'entity', 'annotation', 'creation'])), + table=Table( + ['image', 'entity', 'annotation', 'creation'], + get_orphaned_annotations())), 'orphaned_subunits': Tab( 'orphaned_subunits', - table=Table([ - 'id', 'name', 'class', 'created', 'modified', 'description'])), + table=Table( + ['id', 'name', 'class', 'created', 'modified', 'description'], + [[ + e.id, + e.name, + e.class_.label, + format_date(e.created), + format_date(e.modified), + e.description] for e in orphaned_subunits()])), 'circular': Tab( 'circular_dependencies', table=Table( @@ -513,7 +522,6 @@ def orphans() -> str: format_date(entity.modified), entity.description]) - # Orphaned file entities with no corresponding file entity_file_ids = [] for entity in Entity.get_by_class('file', types=True): entity_file_ids.append(entity.id) @@ -527,81 +535,12 @@ def orphans() -> str: format_date(entity.modified), entity.description]) - # Orphaned files with no corresponding entity - for file in app.config['UPLOAD_PATH'].iterdir(): - if file.name != '.gitignore' \ - and os.path.isfile(file) \ - and file.stem.isdigit() \ - and int(file.stem) not in entity_file_ids: - confirm = _('Delete %(name)s?', name=file.name.replace("'", '')) - tabs['orphaned_files'].table.rows.append([ - file.stem, - convert_size(file.stat().st_size), - format_date(datetime.fromtimestamp(file.stat().st_ctime)), - file.suffix, - link(_('download'), url_for('download', filename=file.name)), - link( - _('delete'), - url_for('admin_file_delete', filename=file.name), - js=f"return confirm('{confirm}')") - if is_authorized('editor') else '']) + tabs['orphaned_files'].table.rows = \ + get_files_without_entity(entity_file_ids) - # Orphaned IIIF files with no corresponding entity if check_iiif_activation(): - for file in Path(g.settings['iiif_path']).iterdir(): - confirm = _('Delete %(name)s?', name=file.name.replace("'", '')) - if file.name != '.gitignore' \ - and os.path.isfile(file) \ - and file.stem.isdigit() \ - and int(file.stem) not in entity_file_ids: - tabs['orphaned_iiif_files'].table.rows.append([ - file.stem, - convert_size(file.stat().st_size), - format_date(datetime.fromtimestamp(file.stat().st_ctime)), - file.suffix, - link( - _('delete'), - url_for('admin_file_iiif_delete', filename=file.name), - js=f"return confirm('{confirm}')") - if is_authorized('editor') else '']) - - # Orphaned annotations - for annotation in Annotation.get_orphaned_annotations(): - file = Entity.get_by_id(annotation.image_id) - entity = Entity.get_by_id(annotation.entity_id) - tabs['orphaned_annotations'].table.rows.append([ - link(file), - link(entity), - annotation.text, - annotation.created, - link( - _('relink entity'), - url_for( - 'admin_annotation_relink', - image_id=file.id, - entity_id=entity.id), - js=f"return confirm('{_('relink entity')}?')"), - link( - _('remove entity'), - url_for( - 'admin_annotation_remove_entity', - annotation_id=annotation.id, - entity_id=entity.id), - js=f"return confirm('{_('remove entity')}?')"), - link( - _('delete annotation'), - url_for('admin_annotation_delete', id_=annotation.id), - js=f"return confirm('{_('delete annotation')}?')")]) - - # Orphaned subunits (without connection to a P46 super) - for entity in orphaned_subunits(): - tabs['orphaned_subunits'].table.rows.append([ - entity.id, - entity.name, - entity.class_.label, - format_date(entity.created), - format_date(entity.modified), - entity.description]) + tabs['orphaned_iiif_files'].table.rows = \ + get_iiif_files_without_entity(entity_file_ids) for tab in tabs.values(): if not tab.table.rows: @@ -894,3 +833,77 @@ def count_files_to_convert() -> int: def count_files_to_delete() -> int: return len([id_ for id_ in g.files if check_iiif_file_exist(id_)]) + + +def get_files_without_entity(entity_file_ids: list[int]) -> list[Any]: + rows = [] + for file in app.config['UPLOAD_PATH'].iterdir(): + if file.name != '.gitignore' \ + and os.path.isfile(file) \ + and file.stem.isdigit() \ + and int(file.stem) not in entity_file_ids: + confirm = _('Delete %(name)s?', name=file.name.replace("'", '')) + rows.append([ + file.stem, + convert_size(file.stat().st_size), + format_date(datetime.fromtimestamp(file.stat().st_ctime)), + file.suffix, + link(_('download'), url_for('download', filename=file.name)), + link( + _('delete'), + url_for('admin_file_delete', filename=file.name), + js=f"return confirm('{confirm}')") + if is_authorized('editor') else '']) + return rows + + +def get_iiif_files_without_entity(entity_file_ids: list[int]) -> list[Any]: + rows = [] + for file in Path(g.settings['iiif_path']).iterdir(): + confirm = _('Delete %(name)s?', name=file.name.replace("'", '')) + if file.name != '.gitignore' \ + and os.path.isfile(file) \ + and file.stem.isdigit() \ + and int(file.stem) not in entity_file_ids: + rows.append([ + file.stem, + convert_size(file.stat().st_size), + format_date(datetime.fromtimestamp(file.stat().st_ctime)), + file.suffix, + link( + _('delete'), + url_for('admin_file_iiif_delete', filename=file.name), + js=f"return confirm('{confirm}')") + if is_authorized('editor') else '']) + return rows + + +def get_orphaned_annotations() -> list[Any]: + rows = [] + for annotation in Annotation.get_orphaned_annotations(): + file = Entity.get_by_id(annotation.image_id) + entity = Entity.get_by_id(annotation.entity_id) + rows.append([ + link(file), + link(entity), + annotation.text, + annotation.created, + link( + _('relink entity'), + url_for( + 'admin_annotation_relink', + image_id=file.id, + entity_id=entity.id), + js=f"return confirm('{_('relink entity')}?')"), + link( + _('remove entity'), + url_for( + 'admin_annotation_remove_entity', + annotation_id=annotation.id, + entity_id=entity.id), + js=f"return confirm('{_('remove entity')}?')"), + link( + _('delete annotation'), + url_for('admin_annotation_delete', id_=annotation.id), + js=f"return confirm('{_('delete annotation')}?')")]) + return rows From 56375801a1095457a41334e2a798695a1c6193e1 Mon Sep 17 00:00:00 2001 From: Alexander Watzinger Date: Wed, 4 Dec 2024 11:56:07 +0100 Subject: [PATCH 7/7] Removed todo lines --- openatlas/database/link.py | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/openatlas/database/link.py b/openatlas/database/link.py index fad43fd51..4e3bb4bf7 100644 --- a/openatlas/database/link.py +++ b/openatlas/database/link.py @@ -174,11 +174,10 @@ def get_all_links_for_network( FROM model.link l JOIN model.entity de ON l.domain_id = de.id JOIN model.entity re ON l.range_id = re.id - WHERE de.openatlas_class_name IN %(system_classes)s - AND re.openatlas_class_name IN %(system_classes)s; + WHERE de.openatlas_class_name IN %(system_classes)s + AND re.openatlas_class_name IN %(system_classes)s; """, {'system_classes': tuple(system_classes)}) - # Todo: return list(g.cursor) would be better but triggers an API error return [dict(row) for row in g.cursor.fetchall()] @@ -202,5 +201,4 @@ def get_links_by_id_network(ids: list[int]) -> list[dict[str, Any]]: WHERE l.range_id IN %(ids)s OR l.domain_id IN %(ids)s; """, {'ids': tuple(ids)}) - # Todo: return list(g.cursor) would be better but triggers an API error return [dict(row) for row in g.cursor.fetchall()]